BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030838
MHAFNLSSINVSTEFNATRRRRCLSYNNSLDLEYGRRRRVGRGCKDLTRTYGIVACVGGG
GGGSGGGGERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPI
FRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLVRRDPI

High Scoring Gene Products

Symbol, full name Information P value
EX2
EXECUTER 2 		protein from Arabidopsis thaliana 0.00054

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030838
        (170 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2196889 - symbol:EX2 "EXECUTER 2" species:3702...   104  0.00054   1


>TAIR|locus:2196889 [details] [associations]
            symbol:EX2 "EXECUTER 2" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
            "nuclease activity" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000304 "response to singlet oxygen"
            evidence=IGI] [GO:0042651 "thylakoid membrane" evidence=IDA]
            [GO:0010343 "singlet oxygen-mediated programmed cell death"
            evidence=IGI] InterPro:IPR001943 Pfam:PF02151 EMBL:CP002684
            GO:GO:0000304 GO:GO:0042651 GO:GO:0010343 HOGENOM:HOG000237424
            ProtClustDB:CLSN2688022 InterPro:IPR021894 Pfam:PF12014
            EMBL:AY045812 EMBL:AY114085 IPI:IPI00520112 RefSeq:NP_564287.1
            UniGene:At.23420 PRIDE:Q94AT5 EnsemblPlants:AT1G27510.1
            GeneID:839642 KEGG:ath:AT1G27510 TAIR:At1g27510 InParanoid:Q94AT5
            OMA:FELYIPG PhylomeDB:Q94AT5 Genevestigator:Q94AT5 Uniprot:Q94AT5
        Length = 651

 Score = 104 (41.7 bits), Expect = 0.00054, P = 0.00054
 Identities = 19/56 (33%), Positives = 37/56 (66%)

Query:    86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAAR 141
             +LLK Q+E A + ED++EA +++ ++     ++ +  + R ++ AV EER+ DA+R
Sbjct:   107 SLLKSQLEDAVEKEDFEEAVKLKQAISEATVDDAVAEIMRQLQTAVNEERYHDASR 162


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       146   0.00079  103 3  11 22  0.41    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.49u 0.18s 14.67t   Elapsed:  00:00:01
  Total cpu time:  14.49u 0.18s 14.67t   Elapsed:  00:00:01
  Start:  Mon May 20 19:20:33 2013   End:  Mon May 20 19:20:34 2013

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