BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030838
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1
PE=1 SV=1
Length = 684
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDK 145
++LK Q+ A K EDY++AAR++ ++ + + + ++ A+ EER++DA RDK
Sbjct: 131 SVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYRALLEERYKDAVYLRDK 190
>sp|A8GP33|UVRC_RICAH UvrABC system protein C OS=Rickettsia akari (strain Hartford)
GN=uvrC PE=3 SV=1
Length = 651
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 99 EDYKE-AARIRDSL----RSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153
EDY++ A+++D L ++ +E L + M+E ++ RFE+AA RD++K ++
Sbjct: 189 EDYRDLVAQVKDFLQGRTKALQEN-----LSKKMEELSSQMRFEEAAEIRDRIKALSYVQ 243
Query: 154 LLKCLSD 160
L C+SD
Sbjct: 244 LKSCVSD 250
>sp|Q9JU21|UVRC_NEIMA UvrABC system protein C OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=uvrC PE=3 SV=2
Length = 617
Score = 36.6 bits (83), Expect = 0.073, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150
EDY+++ R + + + +E L+ M+ A A +FE+AARYRD+++ +
Sbjct: 191 EDYRDSVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALG 242
>sp|Q9JZ26|UVRC_NEIMB UvrABC system protein C OS=Neisseria meningitidis serogroup B
(strain MC58) GN=uvrC PE=3 SV=1
Length = 617
Score = 36.6 bits (83), Expect = 0.080, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150
EDY+++ R + + + +E L+ M+ A A +FE+AARYRD+++ +
Sbjct: 191 EDYRDSVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALG 242
>sp|Q821H8|UVRB_CHLCV UvrABC system protein B OS=Chlamydophila caviae (strain GPIC)
GN=uvrB PE=3 SV=1
Length = 656
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 102 KEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147
+E A+ S++ E E+ I + LM+EA E RF++AA+YRDK+K
Sbjct: 603 QEPAKTPLSIK--ELEKLIKKFENLMQEAAHEFRFDEAAKYRDKMK 646
>sp|Q7VKR0|UVRC_HAEDU UvrABC system protein C OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=uvrC PE=3 SV=1
Length = 612
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFED 138
SQ L Q+ME+AA D++ AAR RD ++S + K+ VA +R +D
Sbjct: 203 SQVIDYLMQKMEIAASELDFETAARFRDQIQSVRAVQE--------KQFVANQRLDD 251
>sp|A7H2D5|UVRC_CAMJD UvrABC system protein C OS=Campylobacter jejuni subsp. doylei
(strain ATCC BAA-1458 / RM4099 / 269.97) GN=uvrC PE=3
SV=1
Length = 600
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 69 ERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEE 118
E L + + L+ S L++QM V A+ E+Y+EAA+IRD + + ++ E
Sbjct: 190 EILDEAMHALLNPSVLLKNLEKQMLVLAQNENYEEAAKIRDQIATIKDLE 239
>sp|Q5F928|UVRC_NEIG1 UvrABC system protein C OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=uvrC PE=3 SV=2
Length = 617
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150
EDY ++ R + + + +E L+ M+ A A +FE+AARYRD+++ +
Sbjct: 191 EDYCDSVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALG 242
>sp|Q5N3H1|UVRB_SYNP6 UvrABC system protein B OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=uvrB PE=3 SV=1
Length = 666
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 70 RLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKE 129
R S++ SFL S+ L KQ++EVA D I + + E + MKE
Sbjct: 590 RSSNAILSFLEVSRR--LNKQELEVAVSQADDLSLEEIPNLITQLEAQ---------MKE 638
Query: 130 AVAEERFEDAARYRDKLKEI 149
A FE+AA+YRD++K++
Sbjct: 639 AAKNLEFEEAAQYRDRIKKL 658
>sp|Q31QS4|UVRB_SYNE7 UvrABC system protein B OS=Synechococcus elongatus (strain PCC
7942) GN=uvrB PE=3 SV=1
Length = 666
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 70 RLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKE 129
R S++ SFL S+ L KQ++EVA D I + + E + MKE
Sbjct: 590 RSSNAILSFLEVSRR--LNKQELEVAVSQADDLSLEEIPNLITQLEAQ---------MKE 638
Query: 130 AVAEERFEDAARYRDKLKEI 149
A FE+AA+YRD++K++
Sbjct: 639 AAKNLEFEEAAQYRDRIKKL 658
>sp|Q3A734|UVRC_PELCD UvrABC system protein C OS=Pelobacter carbinolicus (strain DSM 2380
/ Gra Bd 1) GN=uvrC PE=3 SV=1
Length = 612
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 37 RRRVGRGCKDLTRT---YGIVACVGGGGGG-SGGGGERLSSSARSFLS--RSQAYALLKQ 90
RR C+ +R Y I C G S +RL A + L+ S+ L+
Sbjct: 149 RRHPWESCRSRSRPCLYYQIGQCSAPCHGKISAEDYQRLVDGALALLAGRESEVVESLQH 208
Query: 91 QMEVAAKTEDYKEAARIRDSLRSFEE 116
QM AA+ ++EAAR+RD LR+ E+
Sbjct: 209 QMAAAAERMAFEEAARLRDQLRAIEQ 234
>sp|Q65ZT8|UVRB_BORGA UvrABC system protein B OS=Borrelia garinii (strain PBi) GN=uvrB
PE=3 SV=1
Length = 664
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150
I +L+ ++EAV +ERFEDA RDK+KE++
Sbjct: 625 INKLKFELEEAVNDERFEDAIVLRDKIKELS 655
>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3
SV=1
Length = 331
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 109 DSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
D FE +E F L R M A EER++DAA+YRD+L
Sbjct: 285 DDQPCFEAQE--FDLVRNMLVAAVEERYKDAAQYRDQL 320
>sp|Q4UL10|UVRC_RICFE UvrABC system protein C OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=uvrC PE=3 SV=1
Length = 642
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 99 EDYKE-AARIRDSL--RSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLL 155
EDY++ A+++D L R+ E +E L + M+E ++ RFE+AA RD++K ++ L
Sbjct: 189 EDYRDLVAQVKDFLQGRTKELQE---NLSKKMEELSSQMRFEEAAEIRDRIKALSYVQLK 245
Query: 156 KCLSD 160
+SD
Sbjct: 246 AGVSD 250
>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1
PE=2 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 109 DSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
D FE +E F L R M A EER++DAA+YRD+L
Sbjct: 285 DDQPCFEAQE--FDLVRNMLVAAVEERYKDAAQYRDQL 320
>sp|C4ZHN1|UVRB_EUBR3 UvrABC system protein B OS=Eubacterium rectale (strain ATCC 33656 /
VPI 0990) GN=uvrB PE=3 SV=1
Length = 660
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 109 DSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
+S+ E E+ I + + MK+A AE FE AA YRDKL
Sbjct: 612 ESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKL 649
>sp|Q0SM15|UVRB_BORAP UvrABC system protein B OS=Borrelia afzelii (strain PKo) GN=uvrB
PE=3 SV=1
Length = 664
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150
I +L+ ++EAV +ERFEDA RDK+KE+
Sbjct: 625 IDKLKFELEEAVNDERFEDAIVLRDKIKELG 655
>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1
Length = 331
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 109 DSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
D FE +E F L R M A EER++DAA+YRD+L
Sbjct: 285 DDQPCFEAQE--FDLVRNMLVAAVEERYKDAAQYRDQL 320
>sp|O51776|UVRB_BORBU UvrABC system protein B OS=Borrelia burgdorferi (strain ATCC 35210
/ B31 / CIP 102532 / DSM 4680) GN=uvrB PE=3 SV=1
Length = 673
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150
I +L+ ++EAV +ERFEDA RDK+KE++
Sbjct: 630 IDKLKFDLEEAVNDERFEDAIVLRDKIKELS 660
>sp|Q2RLU8|UVRC_MOOTA UvrABC system protein C OS=Moorella thermoacetica (strain ATCC
39073) GN=uvrC PE=3 SV=1
Length = 613
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 88 LKQQMEVAAKTEDYKEAARIRDSLRSFEE 116
LK+QME AA ++++AAR+RD LR+ +E
Sbjct: 205 LKEQMEAAAARLEFEKAARLRDQLRAVQE 233
>sp|A1W0N0|UVRC_CAMJJ UvrABC system protein C OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=uvrC PE=3 SV=1
Length = 600
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 69 ERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEE 118
E L + + L+ S L++QM V A+ E+Y+EAA++RD + + ++ E
Sbjct: 190 EILDEAMHALLNPSILIKNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLE 239
>sp|A8FMV1|UVRC_CAMJ8 UvrABC system protein C OS=Campylobacter jejuni subsp. jejuni
serotype O:6 (strain 81116 / NCTC 11828) GN=uvrC PE=3
SV=1
Length = 600
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 69 ERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEE 118
E L + + L+ S L++QM V A+ E+Y+EAA++RD + + ++ E
Sbjct: 190 EILDEAMHALLNPSILIKNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLE 239
>sp|A8GST1|UVRC_RICRS UvrABC system protein C OS=Rickettsia rickettsii (strain Sheila
Smith) GN=uvrC PE=3 SV=1
Length = 639
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 99 EDYKE-AARIRDSL--RSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLL 155
EDY++ +++D L R+ E +E L R M+E ++ RFE+AA RD++K ++ L
Sbjct: 189 EDYRDLVTQVKDFLQGRTKELQE---NLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLK 245
Query: 156 KCLSD 160
+SD
Sbjct: 246 AGVSD 250
>sp|B0BYA6|UVRC_RICRO UvrABC system protein C OS=Rickettsia rickettsii (strain Iowa)
GN=uvrC PE=3 SV=1
Length = 639
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 99 EDYKE-AARIRDSL--RSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLL 155
EDY++ +++D L R+ E +E L R M+E ++ RFE+AA RD++K ++ L
Sbjct: 189 EDYRDLVTQVKDFLQGRTKELQE---NLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLK 245
Query: 156 KCLSD 160
+SD
Sbjct: 246 AGVSD 250
>sp|Q92HA7|UVRC_RICCN UvrABC system protein C OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=uvrC PE=3 SV=1
Length = 639
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 99 EDYKE-AARIRDSL--RSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLL 155
EDY++ +++D L R+ E +E L R M+E ++ RFE+AA RD++K ++ L
Sbjct: 189 EDYRDLVTQVKDFLQGRTKELQE---NLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLK 245
Query: 156 KCLSD 160
+SD
Sbjct: 246 AGVSD 250
>sp|C4K1I8|UVRC_RICPU UvrABC system protein C OS=Rickettsia peacockii (strain Rustic)
GN=uvrC PE=3 SV=1
Length = 639
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 99 EDYKE-AARIRDSL--RSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLL 155
EDY++ +++D L R+ E +E L R M+E ++ RFE+AA RD++K ++ L
Sbjct: 189 EDYRDLVTQVKDFLQGRTKELQE---NLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLK 245
Query: 156 KCLSD 160
+SD
Sbjct: 246 AGVSD 250
>sp|C3PP03|UVRC_RICAE UvrABC system protein C OS=Rickettsia africae (strain ESF-5)
GN=uvrC PE=3 SV=1
Length = 639
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 99 EDYKE-AARIRDSL--RSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLL 155
EDY++ +++D L R+ E +E L R M+E ++ RFE+AA RD++K ++ L
Sbjct: 189 EDYRDLVTQVKDFLQGRTKELQE---NLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLK 245
Query: 156 KCLSD 160
+SD
Sbjct: 246 AGVSD 250
>sp|Q64XF8|SECA_BACFR Protein translocase subunit SecA OS=Bacteroides fragilis (strain
YCH46) GN=secA PE=3 SV=1
Length = 1109
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 19/85 (22%)
Query: 87 LLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
L++ Q+ VA TE+ +EAAR R +++A E+R +D ++YR++
Sbjct: 1015 LMRGQIPVAEPTEEQQEAAR-----------------RVEVRQAAPEQR-QDMSKYREQK 1056
Query: 147 KEIA-PNSLLKCLSDATTLVRRDPI 170
+++ PN D V+R+PI
Sbjct: 1057 QDLNDPNQQAAAQQDTREAVKREPI 1081
>sp|C5BV49|UVRB_BEUC1 UvrABC system protein B OS=Beutenbergia cavernae (strain ATCC BAA-8
/ DSM 12333 / NBRC 16432) GN=uvrB PE=3 SV=1
Length = 698
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query: 1 MHAFNLS-SINVSTEFNATRRRRCLSYNNS--LDLEYGRRR---------RVGRGCKDLT 48
M+A +++ S+ ++ E RR + ++YN +D E R+R R K+L
Sbjct: 559 MYADSVTPSMALAIEETNRRREKQVAYNTERGIDPEPLRKRIGDITELLAREDIDTKELL 618
Query: 49 ----RTYGIVACVGGGGGGSGGGGERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEA 104
R G A V GG G ERL+ +A + L+ + L QM VAA ++ A
Sbjct: 619 AGGYRQAGSKAPVPRKAGGDGSMRERLAGAATADLA--ELIQELTDQMHVAAGELQFEVA 676
Query: 105 ARIRDSLRSFEEE 117
AR+RD + ++E
Sbjct: 677 ARLRDEISDLKKE 689
>sp|B7J0S9|UVRB_BORBZ UvrABC system protein B OS=Borrelia burgdorferi (strain ZS7)
GN=uvrB PE=3 SV=1
Length = 668
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150
I +L+ ++EAV +ERFEDA RDK+KE++
Sbjct: 625 IDKLKFDLEEAVNDERFEDAIVLRDKIKELS 655
>sp|Q5LGL5|SECA_BACFN Protein translocase subunit SecA OS=Bacteroides fragilis (strain ATCC
25285 / NCTC 9343) GN=secA PE=3 SV=1
Length = 1109
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 19/85 (22%)
Query: 87 LLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
L++ Q+ VA TE+ +EAAR R +++A E+R +D ++YR++
Sbjct: 1015 LMRGQIPVAEPTEEQQEAAR-----------------RVEVRQAAPEQR-QDMSKYREQK 1056
Query: 147 KEIA-PNSLLKCLSDATTLVRRDPI 170
+++ PN D V+R+PI
Sbjct: 1057 QDLNDPNQQAAAQQDTREAVKREPI 1081
>sp|Q9RUN0|UVRC_DEIRA UvrABC system protein C OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=uvrC PE=3 SV=1
Length = 617
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 27/35 (77%)
Query: 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116
+ A LK+ M+VAA+ +D+++AAR+RD +++ E+
Sbjct: 194 APVIARLKEDMKVAAQGQDFEQAARLRDRVQAVEK 228
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
AA+ ++Y++A +L I RL+ MK A + FE AAR RD+++ +
Sbjct: 172 AAQPDEYRQAVEDVKALLEGRAAPVIARLKEDMKVAAQGQDFEQAARLRDRVQAV 226
>sp|Q5HTL6|UVRC_CAMJR UvrABC system protein C OS=Campylobacter jejuni (strain RM1221)
GN=uvrC PE=3 SV=1
Length = 600
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 69 ERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEE 118
E L + + L+ S L++QM V A+ E+Y+EAA++RD + ++ E
Sbjct: 190 EILDEAIHALLNPSVLLKNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLE 239
>sp|Q9PN51|UVRC_CAMJE UvrABC system protein C OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=uvrC PE=3 SV=1
Length = 600
Score = 33.1 bits (74), Expect = 0.78, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 69 ERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEE 118
E L + + L+ S L++QM V A+ E+Y+EAA++RD + ++ E
Sbjct: 190 EILDEAIHALLNPSVLLKNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLE 239
>sp|Q7N5C7|UVRC_PHOLL UvrABC system protein C OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=uvrC PE=3 SV=1
Length = 610
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 109 DSLRSF---EEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
D +R F ++++ + RL M++A + +FEDAARYRD+++ +
Sbjct: 193 DYIRLFLSGKDQQVLTRLIERMEQASQQLKFEDAARYRDQIQAV 236
>sp|Q747I7|UVRC_GEOSL UvrABC system protein C OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=uvrC PE=3 SV=1
Length = 613
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 124 RRLMKEAVAEERFEDAARYRDKLKEI 149
R+ M A A+ER+EDAARYRD ++ I
Sbjct: 208 RQRMAAAAADERYEDAARYRDLIRAI 233
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 64 SGGGGERLSSSARSFLS--RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115
SG + L+ A FL+ S L +Q+M AA E Y++AAR RD +R+ E
Sbjct: 181 SGEDYQSLAEGAALFLAGKNSDLTRLYRQRMAAAAADERYEDAARYRDLIRAIE 234
>sp|A5DLJ8|NST1_PICGU Stress response protein NST1 OS=Meyerozyma guilliermondii (strain
ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 /
NRRL Y-324) GN=NST1 PE=3 SV=2
Length = 1107
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 80 SRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIF--RLRRLMKEAVAE---E 134
SRS+ LLK E+ + ++ +R+ + +EEP+ ++ KE V + +
Sbjct: 453 SRSERADLLKSLQEIEDHSNQQEQPGTVREQIEELHDEEPVIPEDIQNQPKEVVGQYVDQ 512
Query: 135 RFEDAARYRDKLKE 148
R + RD+L+E
Sbjct: 513 RINQLSELRDRLEE 526
>sp|Q2JXP8|UVRC_SYNJA UvrABC system protein C OS=Synechococcus sp. (strain JA-3-3Ab)
GN=uvrC PE=3 SV=1
Length = 621
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 50 TYGIVACVGGGGGGSGGGGERLSSSARSFLSRSQAYAL---LKQQMEVAAKTEDYKEAAR 106
Y I C G G R + + + + + Q L LK++M AA+ E+Y+ AAR
Sbjct: 175 NYDIGRCPGVCQGLISPEAYRKTVAQVAMIFQGQTDELIRELKEKMAQAAQQENYEAAAR 234
Query: 107 IRDSLRSFEE 116
RD +R E+
Sbjct: 235 YRDQIRGLEQ 244
>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1
SV=4
Length = 2481
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 56 CVGGGGGGSGGGGERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115
C G G G E L + R+ + + Q ++ Q ++AAKT Y R +L+++
Sbjct: 1035 CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNY- 1093
Query: 116 EEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
+ + L+ ++ A R ED A+ R L
Sbjct: 1094 -SQAVMYLQEGLRLAEQLGRREDEAKIRHGL 1123
>sp|A3QDZ3|UVRC_SHELP UvrABC system protein C OS=Shewanella loihica (strain ATCC BAA-1088
/ PV-4) GN=uvrC PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
EDY E ++ ++++ I L M++A + +EDAARYRD++
Sbjct: 185 EDYAEQVKLASLFLRGKDQQVIATLVGKMEQAAMDLNYEDAARYRDQI 232
>sp|B0CE09|UVRB_ACAM1 UvrABC system protein B OS=Acaryochloris marina (strain MBIC 11017)
GN=uvrB PE=3 SV=1
Length = 668
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 98 TEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
T++ ++A D L E I +L MKEA FE+AA+YRD++K +
Sbjct: 607 TQELEDAYEQADDLPLESVPELITQLEAQMKEAAKNLEFEEAAKYRDRIKNL 658
>sp|Q2NGT1|UVRB_METST UvrABC system protein B OS=Methanosphaera stadtmanae (strain DSM
3091) GN=uvrB PE=3 SV=1
Length = 649
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 93 EVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
++ K +D +E D++ + E +E I L + MK+A + FE AA+ RD++ E+
Sbjct: 594 KIEEKVDDIQEI----DNITTDEIDEIIKELEKEMKQAAKDLNFEKAAKLRDRIMEL 646
>sp|Q1IZB2|UVRC_DEIGD UvrABC system protein C OS=Deinococcus geothermalis (strain DSM
11300) GN=uvrC PE=3 SV=1
Length = 616
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116
+ A LK M+ AA+ +D+++AAR+RD +++ E+
Sbjct: 194 APVIARLKADMQAAARAQDFEQAARLRDRVQAVEK 228
>sp|B7IEY7|UVRB_THEAB UvrABC system protein B OS=Thermosipho africanus (strain TCF52B)
GN=uvrB PE=3 SV=1
Length = 661
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 113 SFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
S EE I L M +A +E R+EDAAR RD+L I
Sbjct: 616 SLSIEEYIALLEEEMYKAASELRYEDAARLRDELFNI 652
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 79 LSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117
LS + ALL+++M AA Y++AAR+RD L + E+
Sbjct: 617 LSIEEYIALLEEEMYKAASELRYEDAARLRDELFNIREK 655
>sp|Q3AJW5|UVRC_SYNSC UvrABC system protein C OS=Synechococcus sp. (strain CC9605)
GN=uvrC PE=3 SV=1
Length = 661
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 71 LSSSARSFLSRS-QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116
L A F RS + LL++QME A+ DY+ AAR+RD L+ ++
Sbjct: 202 LRKVAMVFQGRSDELQHLLQEQMERYAERMDYESAARVRDQLQGLDQ 248
>sp|B8HQA9|UVRB_CYAP4 UvrABC system protein B OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=uvrB PE=3 SV=1
Length = 665
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
E I +L MKEA + FE+AA+YRD++K++
Sbjct: 627 ELITQLEAQMKEAAKKLEFEEAAKYRDRIKQL 658
>sp|Q8DHC6|UVRB_THEEB UvrABC system protein B OS=Thermosynechococcus elongatus (strain
BP-1) GN=uvrB PE=3 SV=1
Length = 668
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 113 SFEEEEPIFR-LRRLMKEAVAEERFEDAARYRDKLK 147
S E+ P+ + L MK A E FE+AARYRD++K
Sbjct: 623 SLEDIPPLIQDLEAKMKAAAQELAFEEAARYRDQIK 658
>sp|A9B464|UVRB_HERA2 UvrABC system protein B OS=Herpetosiphon aurantiacus (strain ATCC
23779 / DSM 785) GN=uvrB PE=3 SV=1
Length = 698
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 93 EVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
+VA K Y+ AA DS+ E + I L + MK+A + FE AA RD+L E+
Sbjct: 599 KVAEKPAAYQTAAN-PDSMTKEELFKVINALEKQMKQAAKDLEFEKAALLRDQLTEM 654
>sp|Q0IAF4|UVRC_SYNS3 UvrABC system protein C OS=Synechococcus sp. (strain CC9311)
GN=uvrC PE=3 SV=1
Length = 651
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 87 LLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116
LL QQME A+ D++ AARIRD L+ ++
Sbjct: 215 LLNQQMERYAERLDFESAARIRDQLQGIDQ 244
>sp|A8H3Y9|UVRC_SHEPA UvrABC system protein C OS=Shewanella pealeana (strain ATCC 700345
/ ANG-SQ1) GN=uvrC PE=3 SV=1
Length = 609
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
EDY+E R+ + ++ + L + M++A ++ R+E AA YRD++
Sbjct: 185 EDYQEQVRLATLFLKGKNQQVMSVLVQKMEQASSDMRYEQAALYRDQI 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,837,817
Number of Sequences: 539616
Number of extensions: 2428644
Number of successful extensions: 33338
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 209
Number of HSP's that attempted gapping in prelim test: 30040
Number of HSP's gapped (non-prelim): 2512
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)