Query 030838
Match_columns 170
No_of_seqs 140 out of 634
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3880 Modulator of heat shoc 99.4 1.8E-13 3.9E-18 111.7 4.0 79 74-152 88-170 (176)
2 PF02151 UVR: UvrB/uvrC motif; 98.7 1.9E-08 4.2E-13 62.7 3.2 33 118-150 2-34 (36)
3 PRK07883 hypothetical protein; 98.4 4E-07 8.7E-12 85.4 5.4 56 95-150 383-438 (557)
4 PRK12306 uvrC excinuclease ABC 98.3 8E-07 1.7E-11 83.2 5.4 56 95-150 169-224 (519)
5 PRK00558 uvrC excinuclease ABC 98.3 8.3E-07 1.8E-11 84.1 5.3 56 95-150 179-234 (598)
6 PRK14666 uvrC excinuclease ABC 98.3 9.5E-07 2.1E-11 85.2 5.0 56 95-150 178-233 (694)
7 PRK14670 uvrC excinuclease ABC 98.3 1.1E-06 2.4E-11 83.1 5.3 56 95-150 154-209 (574)
8 PRK14669 uvrC excinuclease ABC 98.3 1.2E-06 2.5E-11 83.7 5.4 57 94-150 179-235 (624)
9 PRK14671 uvrC excinuclease ABC 98.2 1.3E-06 2.7E-11 83.3 5.2 56 95-150 192-247 (621)
10 PRK14667 uvrC excinuclease ABC 98.2 1.4E-06 3E-11 82.3 5.3 56 95-150 176-231 (567)
11 TIGR00194 uvrC excinuclease AB 98.2 1.6E-06 3.4E-11 82.1 5.4 56 95-150 171-226 (574)
12 COG0322 UvrC Nuclease subunit 98.2 1.3E-06 2.9E-11 82.7 4.6 57 95-151 179-235 (581)
13 PRK14672 uvrC excinuclease ABC 98.2 2E-06 4.2E-11 83.0 5.3 56 95-150 182-237 (691)
14 PRK14668 uvrC excinuclease ABC 98.2 2E-06 4.3E-11 81.4 5.1 56 95-150 176-231 (577)
15 COG0556 UvrB Helicase subunit 97.4 0.00015 3.3E-09 69.0 3.8 36 117-152 623-658 (663)
16 TIGR00631 uvrb excinuclease AB 97.3 0.00025 5.3E-09 68.1 3.9 34 117-150 622-655 (655)
17 PRK05298 excinuclease ABC subu 97.1 0.00038 8.2E-09 66.5 3.4 35 117-151 612-646 (652)
18 COG3880 Modulator of heat shoc 94.6 0.038 8.3E-07 45.8 3.5 43 75-117 128-170 (176)
19 PF02151 UVR: UvrB/uvrC motif; 94.6 0.018 3.9E-07 35.6 1.2 31 85-115 4-34 (36)
20 KOG4825 Component of synaptic 93.9 0.042 9.1E-07 52.1 2.8 65 85-149 173-238 (666)
21 COG5296 Transcription factor i 69.3 13 0.00028 35.1 6.0 74 80-153 325-400 (521)
22 PF07743 HSCB_C: HSCB C-termin 66.2 35 0.00075 23.5 6.4 60 84-148 9-68 (78)
23 PRK01773 hscB co-chaperone Hsc 61.4 39 0.00085 27.6 6.8 60 83-147 95-154 (173)
24 TIGR00714 hscB Fe-S protein as 55.0 76 0.0016 25.3 7.4 63 81-148 79-141 (157)
25 PRK03578 hscB co-chaperone Hsc 48.9 91 0.002 25.4 7.0 59 84-147 99-158 (176)
26 PF13838 Clathrin_H_link: Clat 48.0 26 0.00057 24.7 3.2 23 121-143 7-29 (66)
27 TIGR00631 uvrb excinuclease AB 47.7 18 0.00039 35.2 3.2 33 83-115 623-655 (655)
28 PRK05298 excinuclease ABC subu 40.7 23 0.0005 34.2 2.7 34 83-116 613-646 (652)
29 PF15469 Sec5: Exocyst complex 38.4 1.1E+02 0.0024 24.2 6.0 35 115-149 81-115 (182)
30 PRK07883 hypothetical protein; 37.7 25 0.00055 33.5 2.4 34 82-115 405-438 (557)
31 PRK00558 uvrC excinuclease ABC 35.3 30 0.00066 33.4 2.6 33 83-115 202-234 (598)
32 COG0556 UvrB Helicase subunit 35.1 32 0.00068 33.9 2.6 38 79-116 620-657 (663)
33 PF14723 SSFA2_C: Sperm-specif 34.8 1.1E+02 0.0024 25.7 5.5 56 82-137 111-167 (179)
34 PRK05014 hscB co-chaperone Hsc 34.5 1.7E+02 0.0036 23.7 6.4 61 83-148 93-154 (171)
35 PF14559 TPR_19: Tetratricopep 33.6 1.3E+02 0.0027 19.0 4.9 57 95-152 1-57 (68)
36 PF04420 CHD5: CHD5-like prote 32.2 24 0.00052 28.3 1.1 31 81-111 45-75 (161)
37 PF06476 DUF1090: Protein of u 31.1 2.1E+02 0.0046 21.9 6.2 74 74-147 15-106 (115)
38 KOG2376 Signal recognition par 29.3 1.4E+02 0.003 29.7 5.9 56 82-142 13-68 (652)
39 PRK12306 uvrC excinuclease ABC 29.2 46 0.001 31.8 2.7 32 84-115 193-224 (519)
40 PRK14666 uvrC excinuclease ABC 29.0 43 0.00093 33.3 2.5 33 83-115 201-233 (694)
41 PRK14668 uvrC excinuclease ABC 27.8 50 0.0011 31.9 2.7 33 83-115 199-231 (577)
42 KOG3375 Phosphoprotein/predict 26.5 2.2E+02 0.0048 23.6 5.8 42 67-108 51-92 (174)
43 PF04420 CHD5: CHD5-like prote 25.9 80 0.0017 25.2 3.1 31 119-149 48-78 (161)
44 PF14276 DUF4363: Domain of un 25.1 1.2E+02 0.0027 22.5 3.9 32 117-148 25-56 (121)
45 PF08549 SWI-SNF_Ssr4: Fungal 25.0 2E+02 0.0044 28.7 6.2 80 50-132 330-412 (669)
46 COG1677 FliE Flagellar hook-ba 25.0 3.1E+02 0.0067 20.8 7.3 56 86-146 38-93 (105)
47 TIGR03042 PS_II_psbQ_bact phot 25.0 1.4E+02 0.0031 24.0 4.4 28 117-146 94-121 (142)
48 PRK14671 uvrC excinuclease ABC 24.8 56 0.0012 31.8 2.4 34 82-115 214-247 (621)
49 PRK14667 uvrC excinuclease ABC 24.5 57 0.0012 31.5 2.4 33 83-115 199-231 (567)
50 TIGR00194 uvrC excinuclease AB 24.0 65 0.0014 31.1 2.7 32 84-115 195-226 (574)
51 PRK14672 uvrC excinuclease ABC 23.9 59 0.0013 32.4 2.4 33 83-115 205-237 (691)
52 KOG0412 Golgi transport comple 23.6 1.5E+02 0.0032 30.0 5.1 25 125-149 135-159 (773)
53 PF13496 DUF4120: Domain of un 23.6 75 0.0016 24.0 2.4 29 97-125 4-32 (95)
54 PRK14670 uvrC excinuclease ABC 23.5 61 0.0013 31.4 2.4 33 83-115 177-209 (574)
55 PRK14669 uvrC excinuclease ABC 22.3 67 0.0014 31.4 2.4 33 83-115 203-235 (624)
56 PLN03014 carbonic anhydrase 22.0 99 0.0021 28.4 3.3 21 49-69 27-47 (347)
57 PRK01356 hscB co-chaperone Hsc 21.9 1.8E+02 0.0038 23.5 4.5 31 118-148 120-150 (166)
58 KOG0547 Translocase of outer m 21.7 2.9E+02 0.0062 27.2 6.4 23 120-144 546-568 (606)
59 PRK11020 hypothetical protein; 20.6 1.3E+02 0.0029 23.7 3.3 29 120-148 14-42 (118)
60 PF10392 COG5: Golgi transport 20.1 4E+02 0.0087 20.3 6.4 75 74-151 31-114 (132)
No 1
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=99.40 E-value=1.8e-13 Score=111.74 Aligned_cols=79 Identities=15% Similarity=0.378 Sum_probs=67.1
Q ss_pred CcccccchHHHHHHHHHHHHHhhhhhh---HHHHHHHHhhh-cccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhcc
Q 030838 74 SARSFLSRSQAYALLKQQMEVAAKTED---YKEAARIRDSL-RSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (170)
Q Consensus 74 ~~~~~l~~~~cYe~fk~qLe~AVerED---YEeAaklRd~i-lelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~L 149 (170)
.-.++|||+.||..|+.+|.+.+++++ .+|+++....+ ..+.....|..|++.|+++|+.|+||+||.+||||+.|
T Consensus 88 ~~~g~fGCaeCY~tf~~~i~pi~~rvq~g~~~H~GK~P~~~~~~i~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~L 167 (176)
T COG3880 88 IQSGLFGCAECYKTFESQISPIITRVQGGYVEHVGKVPKRIGRKINPKRKIIALKEALQDLIEREEFEEAAVIRDQIRAL 167 (176)
T ss_pred HHhcccchHHHHHHHHHHhhHHHHHhhCCceeecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999998 56777764432 33344678999999999999999999999999999999
Q ss_pred CCC
Q 030838 150 APN 152 (170)
Q Consensus 150 e~~ 152 (170)
+..
T Consensus 168 k~k 170 (176)
T COG3880 168 KAK 170 (176)
T ss_pred Hhh
Confidence 754
No 2
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.67 E-value=1.9e-08 Score=62.66 Aligned_cols=33 Identities=45% Similarity=0.624 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 118 d~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
..+..|..+|..|+++++||+||.|||+|..|+
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999875
No 3
>PRK07883 hypothetical protein; Validated
Probab=98.38 E-value=4e-07 Score=85.36 Aligned_cols=56 Identities=29% Similarity=0.427 Sum_probs=52.9
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.++.|+|.+.++....+++++....+..|+++|++|+++++||+||++||+|..|+
T Consensus 383 ~~~~~~Y~~~v~~~~~fL~G~~~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 438 (557)
T PRK07883 383 RESAAEYAEAVARARAALTGDDDAVLAALRARIDRLAAAERFEEAARLRDRLAALL 438 (557)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 57889999999999999999998999999999999999999999999999999874
No 4
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=98.31 E-value=8e-07 Score=83.19 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=53.0
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.++.|+|.+.+.....+++++....+..|+.+|++|+++++||+||.+||+|.+|+
T Consensus 169 ~~s~e~Y~~~v~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~ 224 (519)
T PRK12306 169 NISSDEYLEQVKKAEEVLKGKIDELIEKLEEEMAEKAKNQQFERALVIRDEINAIE 224 (519)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 57789999999999999999998999999999999999999999999999999884
No 5
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=98.29 E-value=8.3e-07 Score=84.07 Aligned_cols=56 Identities=30% Similarity=0.407 Sum_probs=53.0
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.++.|+|.+.+.....+++++....+..|+++|++|+++++||+||.+||+|.+|+
T Consensus 179 ~~~~e~Y~~~v~~~~~fL~G~~~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~ 234 (598)
T PRK00558 179 LISKEEYAELVDEAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALR 234 (598)
T ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 46889999999999999999998999999999999999999999999999999984
No 6
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=98.26 E-value=9.5e-07 Score=85.20 Aligned_cols=56 Identities=29% Similarity=0.308 Sum_probs=53.1
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.++.|+|.+.+.....+++++....+..|+.+|++|+++++||+||+|||+|..|+
T Consensus 178 ~is~e~Y~~~V~~v~~fL~G~~~~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~ 233 (694)
T PRK14666 178 DVPRETYAALVRKVEMLLSGRSGELVDALRTEMEAASEALEFERAAVLRDQIRAVE 233 (694)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 47889999999999999999998999999999999999999999999999999873
No 7
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=98.26 E-value=1.1e-06 Score=83.14 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=52.8
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.+++|+|.+.+.....+++++....+..|+.+|+.|+++++||+||.+||+|.+|+
T Consensus 154 ~~~~e~Y~~~v~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~ 209 (574)
T PRK14670 154 EDLEKEYQKEVDKIKHILNGNISKLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI 209 (574)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999873
No 8
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=98.26 E-value=1.2e-06 Score=83.74 Aligned_cols=57 Identities=30% Similarity=0.308 Sum_probs=53.4
Q ss_pred HhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 94 VAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 94 ~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
..++.|+|.+.+.....+++++....+..|+++|+.|+++++||+||++||+|..|+
T Consensus 179 ~~i~~e~Y~~~v~~v~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 235 (624)
T PRK14669 179 GLTTDEAYAEAVRDVRLFLEGRHSDLARSLRARMEAAALEMQFELAAKYRDLITTVE 235 (624)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 456789999999999999999998999999999999999999999999999999873
No 9
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=98.24 E-value=1.3e-06 Score=83.32 Aligned_cols=56 Identities=29% Similarity=0.318 Sum_probs=53.0
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.++.|+|.+.+.....+++++....+..|+.+|++|+++++||+||++||+|.+|+
T Consensus 192 ~~s~e~Y~~~v~~~~~fL~G~~~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~ 247 (621)
T PRK14671 192 LQSEEDYLEMIEEIVRLLKGKTSALIRSLTEEMQRAAAELKFEEAAELKDQIESLK 247 (621)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999984
No 10
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=98.23 E-value=1.4e-06 Score=82.33 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=52.7
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.++.++|.+.+.....+++++....+..|+++|++|+++++||+||++||+|.+|+
T Consensus 176 ~~s~e~Y~~~v~~~~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 231 (567)
T PRK14667 176 KISKEDYELSVKSAKAFLSGNVKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALE 231 (567)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 46889999999999999999988999999999999999999999999999999874
No 11
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=98.22 E-value=1.6e-06 Score=82.07 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=53.0
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.++.|+|.+.+.....+++++....+..|+.+|++|+++++||+||++||+|.+|+
T Consensus 171 ~~s~e~Y~~~v~~~~~fL~g~~~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 226 (574)
T TIGR00194 171 EITEEEYQQIVEKIELFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVR 226 (574)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 57889999999999999999998999999999999999999999999999999984
No 12
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=98.21 E-value=1.3e-06 Score=82.75 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=53.5
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccCC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le~ 151 (170)
.|+.|+|.+++.-...+++++....+..|+++|++|+++++||.||+|||+|.+|+.
T Consensus 179 ~is~e~Y~e~v~~~~~fL~G~~~~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~ 235 (581)
T COG0322 179 LISEEEYREIVEEVKGFLKGKDDAVLQELEEKMEEASENLDFERAARLRDQIKALEK 235 (581)
T ss_pred cCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 688999999999999999999888999999999999999999999999999999843
No 13
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=98.19 E-value=2e-06 Score=83.00 Aligned_cols=56 Identities=30% Similarity=0.374 Sum_probs=53.0
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.++.|+|.+.+.....+++++....+..|+.+|+.|+++++||+||+|||+|..|+
T Consensus 182 ~is~e~Y~~~V~~v~~fL~G~~~~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~ 237 (691)
T PRK14672 182 WVSPRTYQKDIHEITLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR 237 (691)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999985
No 14
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=98.18 E-value=2e-06 Score=81.40 Aligned_cols=56 Identities=29% Similarity=0.338 Sum_probs=52.8
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.++.|+|.+.+.....++.++....+..|+.+|++|+++++||+||++||+|.+|+
T Consensus 176 ~~s~e~Y~~~v~~~~~fL~G~~~~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~ 231 (577)
T PRK14668 176 EIDEEAYAEDVESAERFFEGETGVLADPLRREMEAAAQAQEFERAANLRDRLEAVE 231 (577)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 47889999999999999999988899999999999999999999999999999884
No 15
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00015 Score=69.05 Aligned_cols=36 Identities=44% Similarity=0.627 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCC
Q 030838 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (170)
Q Consensus 117 Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le~~ 152 (170)
+..+..|+++|++|+++.+||+||+|||+|.+|+..
T Consensus 623 ~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~ 658 (663)
T COG0556 623 EKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEE 658 (663)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999998754
No 16
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.26 E-value=0.00025 Score=68.10 Aligned_cols=34 Identities=38% Similarity=0.553 Sum_probs=31.0
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 117 Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
+..+..|+++|++|+++++||+||.+||+|..|+
T Consensus 622 ~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 622 KKLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3577899999999999999999999999998874
No 17
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=97.10 E-value=0.00038 Score=66.48 Aligned_cols=35 Identities=46% Similarity=0.626 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccCC
Q 030838 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (170)
Q Consensus 117 Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le~ 151 (170)
+..+..|+++|++|+++++||+||+|||+|.+|+.
T Consensus 612 ~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~ 646 (652)
T PRK05298 612 EKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKE 646 (652)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35888999999999999999999999999999864
No 18
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=94.61 E-value=0.038 Score=45.79 Aligned_cols=43 Identities=23% Similarity=0.396 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcc
Q 030838 75 ARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117 (170)
Q Consensus 75 ~~~~l~~~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsE 117 (170)
..+.......+..|+..|+++|++|||++|+.+||.|+.++.+
T Consensus 128 ~~~~i~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k 170 (176)
T COG3880 128 IGRKINPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAK 170 (176)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666788999999999999999999999999999988743
No 19
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=94.57 E-value=0.018 Score=35.64 Aligned_cols=31 Identities=35% Similarity=0.669 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 85 Ye~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
+..++..|..+++.++|+.|+.+++.+..++
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999987654
No 20
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=93.93 E-value=0.042 Score=52.08 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhcccCc-chhHHHHHHHHHHHHHhhhhHHHHHHHHHhhcc
Q 030838 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEE-EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (170)
Q Consensus 85 Ye~fk~qLe~AVerEDYEeAaklRd~ilelKs-Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~L 149 (170)
+-.+...-+.||.+|+|..|.+.+-.+..+++ ...+++|+..-..||++|||..|-...|+|.++
T Consensus 173 IgaidenKqeAVakEdfdlAKkaklAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkdeieal 238 (666)
T KOG4825|consen 173 IGAIDENKQEAVAKEDFDLAKKAKLAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDEIEAL 238 (666)
T ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHH
Confidence 34455556779999999988887777766653 468999999999999999999999999999886
No 21
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=69.31 E-value=13 Score=35.11 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcch--hHHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCCC
Q 030838 80 SRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEE--PIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (170)
Q Consensus 80 ~~~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsEd--~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le~~~ 153 (170)
..+..|..|..-+...++..+...++.-++.+....... ...+|+++++.|++..+=+.|+.|-++|..|+...
T Consensus 325 ~v~~k~~~l~d~~~~~LSdkeis~~V~~k~e~~~k~sNvi~eKt~Lrqkrq~A~e~~n~k~~~ey~~qL~~~E~~~ 400 (521)
T COG5296 325 KVKEKYDKLVDTMGRRLSDKEISKMVACKDEVHPKRSNVIHEKTELRQKRQRAIELKNKKAAMEYQRQLEEIEDNE 400 (521)
T ss_pred HHHHHHHHHHHHhCCcCchhHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Confidence 344556666666666777777888888888876555432 23389999999999999999999999999987654
No 22
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=66.25 E-value=35 Score=23.52 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 030838 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (170)
Q Consensus 84 cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~ 148 (170)
.+.+++.+|+.+....+......+...+. ..+..+..+|..+....+|+.|+.+=.+++-
T Consensus 9 e~mE~rE~le~~~~~~~~~~L~~l~~~~~-----~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky 68 (78)
T PF07743_consen 9 EQMELREELEEAQNSDDEAELEELKKEIE-----ERIKELIKELAEAFDAKDWEEAKEALRKLKY 68 (78)
T ss_dssp HHHHHHHHHHHHCCCTSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 46778888888766544333333444333 4677888899999999999999877665543
No 23
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=61.39 E-value=39 Score=27.59 Aligned_cols=60 Identities=12% Similarity=0.246 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk 147 (170)
....+++..|+.+-...+.+....+...+. ..+..+...+.++....+|+.|+..=-+++
T Consensus 95 me~ME~rE~lee~~~~~d~~~L~~l~~~v~-----~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~ 154 (173)
T PRK01773 95 MQQMEWREQLEEIEQQQDEDALTAFSKEIK-----QEQQAILTELSTALNSQQWQQASQINDRLR 154 (173)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 357778888887755555333334443332 466777888889999999999987655544
No 24
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=54.98 E-value=76 Score=25.30 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 030838 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (170)
Q Consensus 81 ~~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~ 148 (170)
+...+.+++..|+.+....+.+....+...+ +..+..+...|.++.+.++|+.|+..=.+++-
T Consensus 79 fLme~Me~rE~lee~~~~~d~~~L~~l~~~~-----~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky 141 (157)
T TIGR00714 79 FLMEQLELREELDEIEQAKDEARLESFIKRV-----KKMFQTRHQLLVEQLDNQTWAAAADYTRKLRF 141 (157)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4456778888887765555533333333322 24677788889999999999999876555543
No 25
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=48.92 E-value=91 Score=25.44 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHh-hhhHHHHHHHHHhh
Q 030838 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAE-ERFEDAARYRDKLK 147 (170)
Q Consensus 84 cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~-EdYE~AA~lRDeIk 147 (170)
...+++..|+++-...+.+..-.+...+ +..+..+..+|.++.+. .+|+.|+..=.+++
T Consensus 99 e~mE~rE~lee~~~~~d~~~L~~l~~e~-----~~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL~ 158 (176)
T PRK03578 99 QQMEWREAIEDARAARDVDALDALLAEL-----RDERRERYAELGALLDSRGDDQAAAEAVRQLM 158 (176)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 4677888888876444433333333333 34677778888888887 89999987655544
No 26
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=47.98 E-value=26 Score=24.73 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Q 030838 121 FRLRRLMKEAVAEERFEDAARYR 143 (170)
Q Consensus 121 ~~L~~~L~~AIe~EdYE~AA~lR 143 (170)
....++.++.+...+|++||++=
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~A 29 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKVA 29 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 34678899999999999999863
No 27
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=47.73 E-value=18 Score=35.23 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
.-+..|+.+|..+.+..+||+|+.+|+.+..++
T Consensus 623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 346789999999999999999999999987653
No 28
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=40.72 E-value=23 Score=34.23 Aligned_cols=34 Identities=38% Similarity=0.609 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCc
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKs 116 (170)
.-...|+.+|..+.+..+||.|+.+|+.+..++.
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~ 646 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKE 646 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999887663
No 29
>PF15469 Sec5: Exocyst complex component Sec5
Probab=38.42 E-value=1.1e+02 Score=24.18 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=26.2
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhcc
Q 030838 115 EEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (170)
Q Consensus 115 KsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~L 149 (170)
+.-..+-.|=..|.++|+.++|+.|...=...+.+
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 33446667888899999999999887776666554
No 30
>PRK07883 hypothetical protein; Validated
Probab=37.71 E-value=25 Score=33.50 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 82 ~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
..-++.|+.+|+.+.++.+||.|+++++.+..++
T Consensus 405 ~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 438 (557)
T PRK07883 405 DAVLAALRARIDRLAAAERFEEAARLRDRLAALL 438 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999887655
No 31
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=35.30 E-value=30 Score=33.38 Aligned_cols=33 Identities=27% Similarity=0.516 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
.-++.|+.+|+.+.++.+||.|+.+++.+..++
T Consensus 202 ~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~ 234 (598)
T PRK00558 202 EVLKELEEKMEEASENLEFERAARYRDQIQALR 234 (598)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999987765
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=35.14 E-value=32 Score=33.86 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=32.9
Q ss_pred cchHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCc
Q 030838 79 LSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (170)
Q Consensus 79 l~~~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKs 116 (170)
-....-++.|+.+|..+.+.-+|+.|++++|.+.+++.
T Consensus 620 ~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~ 657 (663)
T COG0556 620 KELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKE 657 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34456689999999999999999999999999987764
No 33
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=34.76 E-value=1.1e+02 Score=25.65 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC-cchhHHHHHHHHHHHHHhhhhH
Q 030838 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE-EEEPIFRLRRLMKEAVAEERFE 137 (170)
Q Consensus 82 ~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK-sEd~L~~L~~~L~~AIe~EdYE 137 (170)
+.+...|+.+|.++--..--..+.-.++.-.+-+ ..+.+..|+..+.+-+++.+|.
T Consensus 111 r~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~Q 167 (179)
T PF14723_consen 111 RRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQ 167 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888776432222122222222211111 1234555555555555555543
No 34
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=34.53 E-value=1.7e+02 Score=23.66 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHH-HHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 030838 83 QAYALLKQQMEVAAKTEDYKE-AARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEe-AaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~ 148 (170)
....+++.+|+.+....+.+. ...+... ....+..+...|..+.+..+|+.|+.+=.+++-
T Consensus 93 me~me~rE~le~~~~~~d~~~~l~~l~~~-----~~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky 154 (171)
T PRK05014 93 MEQMELREELEDIEQSKDPEAALESFIKR-----VKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKF 154 (171)
T ss_pred HHHHHHHHHHHhhccccCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 356777777777655444222 2222222 234677788888999999999999876655543
No 35
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=33.62 E-value=1.3e+02 Score=19.02 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=36.9
Q ss_pred hhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCC
Q 030838 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (170)
Q Consensus 95 AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le~~ 152 (170)
++...+|.+|...-........ ......-.--+-.++..+|++|..+=+++....|.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3567788888887555544332 23333335567788899999999887777665554
No 36
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.15 E-value=24 Score=28.25 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 030838 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSL 111 (170)
Q Consensus 81 ~~~cYe~fk~qLe~AVerEDYEeAaklRd~i 111 (170)
....+.+++.++...=.+++|+..+++.+.+
T Consensus 45 l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~ 75 (161)
T PF04420_consen 45 LRKEILQLKRELNAISAQDEFAKWAKLNRKL 75 (161)
T ss_dssp HHHHHHHHHHHHTTS-TTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3444555555555544555566666654443
No 37
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=31.15 E-value=2.1e+02 Score=21.93 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=52.1
Q ss_pred CcccccchHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC------------------cchhHHHHHHHHHHHHHhhh
Q 030838 74 SARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE------------------EEEPIFRLRRLMKEAVAEER 135 (170)
Q Consensus 74 ~~~~~l~~~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK------------------sEd~L~~L~~~L~~AIe~Ed 135 (170)
+....-+|..-...+..+|+.|=..-+-..+.-+...+..++ .+..|.+.+.+|++|...++
T Consensus 15 ~~~~~~gC~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~ 94 (115)
T PF06476_consen 15 AAAALTGCEAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGD 94 (115)
T ss_pred hccccCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444577899999999999988766655333333333333221 23467788899999999999
Q ss_pred hHHHHHHHHHhh
Q 030838 136 FEDAARYRDKLK 147 (170)
Q Consensus 136 YE~AA~lRDeIk 147 (170)
.++-+..++.|.
T Consensus 95 ~~KI~K~~~KL~ 106 (115)
T PF06476_consen 95 SDKIAKRQKKLA 106 (115)
T ss_pred HHHHHHHHHHHH
Confidence 998888887764
No 38
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.33 E-value=1.4e+02 Score=29.66 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHH
Q 030838 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARY 142 (170)
Q Consensus 82 ~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~l 142 (170)
+.||.. |.-..+.++|++|++-...++.+- ++....+.-++=..|+.+.||+|-.+
T Consensus 13 ~~l~t~----ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ 68 (652)
T KOG2376|consen 13 EALLTD----LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKL 68 (652)
T ss_pred HHHHHH----HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHH
Confidence 555554 555667899999999999988765 57888889999999999999999843
No 39
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=29.17 E-value=46 Score=31.79 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 84 cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
=+..|+.+|+.+.++.+||.|+.+++.+..++
T Consensus 193 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~ 224 (519)
T PRK12306 193 LIEKLEEEMAEKAKNQQFERALVIRDEINAIE 224 (519)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999987665
No 40
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=28.95 E-value=43 Score=33.33 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
.=++.|+.+|+.+.++.+||.|++++|.+..++
T Consensus 201 ~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~ 233 (694)
T PRK14666 201 ELVDALRTEMEAASEALEFERAAVLRDQIRAVE 233 (694)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 347789999999999999999999999987665
No 41
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=27.84 E-value=50 Score=31.88 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
.-++.++.+|+.+.++.+||.|+.+++.+..++
T Consensus 199 ~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~ 231 (577)
T PRK14668 199 VLADPLRREMEAAAQAQEFERAANLRDRLEAVE 231 (577)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999987655
No 42
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=26.54 E-value=2.2e+02 Score=23.62 Aligned_cols=42 Identities=12% Similarity=0.039 Sum_probs=28.6
Q ss_pred CCcccCCCcccccchHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 030838 67 GGERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIR 108 (170)
Q Consensus 67 ~~~~~~~~~~~~l~~~~cYe~fk~qLe~AVerEDYEeAaklR 108 (170)
+++-+++.+..--.+...|.+-+.=.+.+|+-|+.-.+.+-.
T Consensus 51 ~~ee~~~~~dssed~Ede~~~~rKGve~lieIeNPNrV~qkt 92 (174)
T KOG3375|consen 51 KKEESELDSDSSEDSEDEAQVARKGVEGLIEIENPNRVAQKT 92 (174)
T ss_pred chhhhcccccccchhhhHHHHHhhhhhhheeccCchHHHHhh
Confidence 555555544555567778888888899999888855555433
No 43
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.87 E-value=80 Score=25.24 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHhhcc
Q 030838 119 PIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (170)
Q Consensus 119 ~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~L 149 (170)
.+.+|+++|+.-+...+|-+.|+++-++.++
T Consensus 48 Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl 78 (161)
T PF04420_consen 48 EILQLKRELNAISAQDEFAKWAKLNRKLDKL 78 (161)
T ss_dssp HHHHHHHHHTTS-TTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 5566666777767777777777777776665
No 44
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=25.12 E-value=1.2e+02 Score=22.45 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 030838 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (170)
Q Consensus 117 Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~ 148 (170)
.+.+...-..++++|+++++++|...-+++..
T Consensus 25 ~~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~ 56 (121)
T PF14276_consen 25 TDSIEEQLEQIEEAIENEDWEKAYKETEELEK 56 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35666667788889999999999887777654
No 45
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=25.04 E-value=2e+02 Score=28.71 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=52.2
Q ss_pred eeeEEEecCCCCCCCCCCCcccCCCcccccchHHHHHHHHHHHHHhhhhhh--HHHHHH-HHhhhcccCcchhHHHHHHH
Q 030838 50 TYGIVACVGGGGGGSGGGGERLSSSARSFLSRSQAYALLKQQMEVAAKTED--YKEAAR-IRDSLRSFEEEEPIFRLRRL 126 (170)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~cYe~fk~qLe~AVerED--YEeAak-lRd~ilelKsEd~L~~L~~~ 126 (170)
+-.|+---+| ++.++..+..++...++|.--+ -++|+....+.|.... .+++.+ .++.+.+++....|...+.+
T Consensus 330 TeGiF~ap~~--~~~~~~~~~~~~~~~gkLdp~~-aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~ 406 (669)
T PF08549_consen 330 TEGIFEAPGG--QSGDASKEGPKKPYVGKLDPGK-AEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKE 406 (669)
T ss_pred hcccccCCCC--CCccccccCCCcccccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3455543222 3345555667778889998555 9999999988876655 233332 24445556666688888888
Q ss_pred HHHHHH
Q 030838 127 MKEAVA 132 (170)
Q Consensus 127 L~~AIe 132 (170)
|..|+.
T Consensus 407 LR~a~~ 412 (669)
T PF08549_consen 407 LRDAVE 412 (669)
T ss_pred HHhccC
Confidence 888887
No 46
>COG1677 FliE Flagellar hook-basal body protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.98 E-value=3.1e+02 Score=20.76 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 030838 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (170)
Q Consensus 86 e~fk~qLe~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeI 146 (170)
+.|++.|...-+... .+-.....+..++... +.+..-.|++|... ++-|..+||.+
T Consensus 38 ~~L~~ai~~vn~~Q~--~a~~~~~~~~~G~~~~-l~dVmia~~KAs~s--Lq~ai~VRnKl 93 (105)
T COG1677 38 EVLKNAIDDVNDTQK--KAEKASEAFILGQAGD-LHDVMIAMQKASVS--LQTAIQVRNKL 93 (105)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHcCCcch-HHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 344444444433322 2333455566666654 88888889999888 88899999987
No 47
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=24.97 E-value=1.4e+02 Score=23.97 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 030838 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (170)
Q Consensus 117 Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeI 146 (170)
+.....|-.+|...+++.|| ||+.+|.-
T Consensus 94 qk~a~~L~~~Lf~~L~~LD~--AA~~kd~~ 121 (142)
T TIGR03042 94 QKEALALAKELKDDLEKLDE--AARLQDGP 121 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhcCHH
Confidence 45677888889988888664 67777754
No 48
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=24.81 E-value=56 Score=31.82 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 82 ~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
..-++.|+.+|+.+.++.+||.|+.++|.+..++
T Consensus 214 ~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~ 247 (621)
T PRK14671 214 SALIRSLTEEMQRAAAELKFEEAAELKDQIESLK 247 (621)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3558899999999999999999999999987665
No 49
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=24.54 E-value=57 Score=31.51 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
.=++.|+.+|+.+.++.+||.|+.+++.+..++
T Consensus 199 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 231 (567)
T PRK14667 199 EVLPELYDKIEEYSQKLMFEKAAVIRDQILALE 231 (567)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 347789999999999999999999999987655
No 50
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=23.97 E-value=65 Score=31.12 Aligned_cols=32 Identities=38% Similarity=0.560 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 84 cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
=...|+.+|+.+.++.+||.|+.+++.+..++
T Consensus 195 ~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 226 (574)
T TIGR00194 195 VIKELEQKMEKASENLEFEEAARIRDQIAAVR 226 (574)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999987665
No 51
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=23.89 E-value=59 Score=32.38 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
.-+..|+.+|+.+.++.+||.|+.++|.+..++
T Consensus 205 ~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~ 237 (691)
T PRK14672 205 ATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR 237 (691)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999987655
No 52
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=1.5e+02 Score=29.99 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcc
Q 030838 125 RLMKEAVAEERFEDAARYRDKLKEI 149 (170)
Q Consensus 125 ~~L~~AIe~EdYE~AA~lRDeIk~L 149 (170)
+..+.|++.||||.||..=-++..|
T Consensus 135 ~gv~~Al~seDyE~AA~~IhRflsl 159 (773)
T KOG0412|consen 135 EGVDTALESEDYEKAATHIHRFLSL 159 (773)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 5678999999999999887777666
No 53
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=23.56 E-value=75 Score=24.00 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHhhhcccCcchhHHHHHH
Q 030838 97 KTEDYKEAARIRDSLRSFEEEEPIFRLRR 125 (170)
Q Consensus 97 erEDYEeAaklRd~ilelKsEd~L~~L~~ 125 (170)
-+|+|+++++.+..|..-.-++-+++|++
T Consensus 4 cqEhy~kvv~yA~sI~D~tl~~ClerLk~ 32 (95)
T PF13496_consen 4 CQEHYDKVVQYAESIGDSTLQKCLERLKQ 32 (95)
T ss_pred hHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 37899999999999887555566666654
No 54
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=23.54 E-value=61 Score=31.39 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
.=+..|+.+|+.+.++.+||.|+.+++.+..++
T Consensus 177 ~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~ 209 (574)
T PRK14670 177 KLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI 209 (574)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 347789999999999999999999999987665
No 55
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=22.25 E-value=67 Score=31.44 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccC
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelK 115 (170)
.=+..|+.+|+.+.++.+||.|+.++|.+..++
T Consensus 203 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 235 (624)
T PRK14669 203 DLARSLRARMEAAALEMQFELAAKYRDLITTVE 235 (624)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 347789999999999999999999999987655
No 56
>PLN03014 carbonic anhydrase
Probab=22.01 E-value=99 Score=28.39 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=12.3
Q ss_pred ceeeEEEecCCCCCCCCCCCc
Q 030838 49 RTYGIVACVGGGGGGSGGGGE 69 (170)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~ 69 (170)
|...++|+..-.+..+.+|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~ 47 (347)
T PLN03014 27 RTSSTVACLPPASSSSSSSSS 47 (347)
T ss_pred CCcceEEEeccccccccccCC
Confidence 555889998655543333333
No 57
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=21.95 E-value=1.8e+02 Score=23.50 Aligned_cols=31 Identities=26% Similarity=0.139 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 030838 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (170)
Q Consensus 118 d~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~ 148 (170)
..+..+...|.++.+..+|+.|+.+=.+++-
T Consensus 120 ~~~~~~~~~l~~~f~~~d~~~A~~~~~~L~y 150 (166)
T PRK01356 120 LMYKNEIDSLKQAFEEQNLSDATIKTSKLKY 150 (166)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4667888889999999999999876666544
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=2.9e+02 Score=27.20 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Q 030838 120 IFRLRRLMKEAVAEERFEDAARYRD 144 (170)
Q Consensus 120 L~~L~~~L~~AIe~EdYE~AA~lRD 144 (170)
++..+.+|.+||+- ||+||.|-.
T Consensus 546 ~~lQ~~~i~eAiel--FEksa~lAr 568 (606)
T KOG0547|consen 546 FELQRGKIDEAIEL--FEKSAQLAR 568 (606)
T ss_pred HHHHHhhHHHHHHH--HHHHHHHHH
Confidence 33445778888877 888887643
No 59
>PRK11020 hypothetical protein; Provisional
Probab=20.62 E-value=1.3e+02 Score=23.67 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 030838 120 IFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (170)
Q Consensus 120 L~~L~~~L~~AIe~EdYE~AA~lRDeIk~ 148 (170)
++.++.+|..|...+|-|.-+++.++|..
T Consensus 14 LD~~~~Klaaa~~rgd~~~i~qf~~E~~~ 42 (118)
T PRK11020 14 LDAIRHKLAAASLRGDAEKYAQFEKEKAT 42 (118)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 60
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=20.11 E-value=4e+02 Score=20.29 Aligned_cols=75 Identities=9% Similarity=0.174 Sum_probs=44.6
Q ss_pred CcccccchHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHH---HHHHH------hhhhHHHHHHHH
Q 030838 74 SARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLM---KEAVA------EERFEDAARYRD 144 (170)
Q Consensus 74 ~~~~~l~~~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L---~~AIe------~EdYE~AA~lRD 144 (170)
.++..-.+..+++++..+|...|.. +|+........+...+. .+..++..+ +..++ -+-||.|.....
T Consensus 31 ~~~~l~kL~~~i~eld~~i~~~v~~-~~~~LL~q~~~~~~~~~--~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~ 107 (132)
T PF10392_consen 31 ISTPLKKLNFDIQELDKRIRSQVTS-NHEDLLSQASSIEELES--VLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTS 107 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4445556678999999999998876 55666665555544432 333332222 22222 245787877777
Q ss_pred HhhccCC
Q 030838 145 KLKEIAP 151 (170)
Q Consensus 145 eIk~Le~ 151 (170)
+++.|..
T Consensus 108 ~L~rl~~ 114 (132)
T PF10392_consen 108 QLERLHQ 114 (132)
T ss_pred HHHHHHH
Confidence 7766543
Done!