Query 030838
Match_columns 170
No_of_seqs 140 out of 634
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e52_A Excinuclease ABC subuni 98.5 4.2E-08 1.4E-12 67.6 2.3 35 117-151 23-57 (63)
2 2d7d_A Uvrabc system protein B 97.7 2E-05 7E-10 73.1 3.6 36 117-152 625-660 (661)
3 1c4o_A DNA nucleotide excision 97.1 6.7E-05 2.3E-09 69.6 0.0 36 117-152 610-645 (664)
4 1e52_A Excinuclease ABC subuni 88.7 0.16 5.5E-06 34.5 1.5 36 81-116 22-57 (63)
5 1gp8_A Protein (scaffolding pr 85.5 1.2 4E-05 28.0 3.9 34 117-150 7-40 (40)
6 3pxg_A Negative regulator of g 79.0 1.2 4.1E-05 39.1 3.1 33 118-150 401-433 (468)
7 2d7d_A Uvrabc system protein B 62.7 5.8 0.0002 36.6 3.8 35 82-116 625-659 (661)
8 3hho_A CO-chaperone protein HS 47.7 50 0.0017 25.4 6.5 59 83-146 96-155 (174)
9 1c4o_A DNA nucleotide excision 45.0 4.5 0.00016 37.3 0.0 36 82-117 610-645 (664)
10 1fpo_A HSC20, chaperone protei 41.1 86 0.0029 24.0 6.9 58 84-146 94-151 (171)
11 3he4_B Synzip5; heterodimeric 40.3 24 0.00082 22.1 2.8 24 118-141 20-43 (46)
12 2fzt_A Hypothetical protein TM 37.2 40 0.0014 23.7 3.9 24 120-143 4-27 (79)
13 3ra3_B P2F; coiled coil domain 36.4 43 0.0015 19.0 3.2 21 120-140 5-25 (28)
14 2p06_A Hypothetical protein AF 35.9 36 0.0012 24.8 3.6 31 114-147 56-89 (114)
15 3uo3_A J-type CO-chaperone JAC 35.0 85 0.0029 24.4 6.0 63 83-153 105-177 (181)
16 2fzt_A Hypothetical protein TM 33.3 77 0.0026 22.3 4.8 23 85-107 4-26 (79)
17 2yru_A Steroid receptor RNA ac 32.8 1.5E+02 0.005 21.8 7.0 39 108-146 49-87 (118)
18 2wh0_Q Pkcev3, protein kinase 28.7 61 0.0021 18.7 3.1 26 70-97 2-27 (31)
19 3syn_E ATP-binding protein YLX 27.9 28 0.00095 19.0 1.4 16 134-149 4-19 (23)
20 1yzm_A FYVE-finger-containing 25.9 90 0.0031 20.1 3.9 32 119-150 10-41 (51)
21 3pxi_A Negative regulator of g 24.5 46 0.0016 30.6 3.1 32 118-149 401-432 (758)
22 3v1a_A Computational design, M 23.8 84 0.0029 20.1 3.4 32 119-150 9-40 (48)
23 2wol_A ORF15, clavulanic acid 22.8 19 0.00063 31.6 0.1 20 45-64 2-21 (562)
24 1z0k_B FYVE-finger-containing 21.1 1.2E+02 0.004 20.8 3.9 22 123-144 32-53 (69)
No 1
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=98.49 E-value=4.2e-08 Score=67.63 Aligned_cols=35 Identities=31% Similarity=0.520 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccCC
Q 030838 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (170)
Q Consensus 117 Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le~ 151 (170)
...+..|+.+|++|+++++||+||.|||+|+.|+.
T Consensus 23 ~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~ 57 (63)
T 1e52_A 23 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999864
No 2
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.67 E-value=2e-05 Score=73.08 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCC
Q 030838 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (170)
Q Consensus 117 Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le~~ 152 (170)
...+.+|+++|++|+++++||+||+|||+|++|+..
T Consensus 625 ~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 625 QKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999999764
No 3
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.13 E-value=6.7e-05 Score=69.64 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCC
Q 030838 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (170)
Q Consensus 117 Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le~~ 152 (170)
...+.+|+++|++|+++++||+||+|||+|+.|+..
T Consensus 610 ~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~ 645 (664)
T 1c4o_A 610 RERIAELELAMWQAAEALDFERAARLRDEIRALEAR 645 (664)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999866
No 4
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=88.69 E-value=0.16 Score=34.53 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCc
Q 030838 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (170)
Q Consensus 81 ~~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKs 116 (170)
...-+..|+.+|..+.+..+|+.|+.+|+.+..++.
T Consensus 22 ~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~ 57 (63)
T 1e52_A 22 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 455689999999999999999999999999987764
No 5
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=85.52 E-value=1.2 Score=27.96 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 117 Ed~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
.+.++.++++|..|-.+.|||.+-.|.-+++.|+
T Consensus 7 ~d~I~aiEQqiyvA~seGd~etv~~Le~QL~~lR 40 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKGDVETYRKLKAKLKGIR 40 (40)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 4678899999999999999999999999987763
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=79.03 E-value=1.2 Score=39.10 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 118 d~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
..+..|..+++.++..+||++|+.+++++..|+
T Consensus 401 ~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~ 433 (468)
T 3pxg_A 401 QKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLR 433 (468)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999998774
No 7
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=62.69 E-value=5.8 Score=36.58 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCc
Q 030838 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (170)
Q Consensus 82 ~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKs 116 (170)
..-+..|+.+|..+.+..+|++|+++||.+..++.
T Consensus 625 ~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~ 659 (661)
T 2d7d_A 625 QKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 (661)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999988764
No 8
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=47.72 E-value=50 Score=25.39 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHH-HHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 030838 83 QAYALLKQQMEVAAKTEDYKEA-ARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeA-aklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeI 146 (170)
....+++.+|+++-..++-+.+ ..+...+ ...+..+..+|..+...++|+.|+.+=.++
T Consensus 96 me~me~rE~le~~~~~~d~~~~l~~l~~~~-----~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL 155 (174)
T 3hho_A 96 MEQMELREELESVTACADPEAALVAFDTKV-----TAMQRHYLAQLQGQLAQSEWLAAADQIRKL 155 (174)
T ss_dssp HHHHHHHHHHHHHTSSSSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3466778888887766552222 2233322 347778889999999999999998654444
No 9
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=44.98 E-value=4.5 Score=37.29 Aligned_cols=36 Identities=36% Similarity=0.495 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcc
Q 030838 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117 (170)
Q Consensus 82 ~~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsE 117 (170)
...+..|+.+|..+++..+|+.|++++|.+..++.+
T Consensus 610 ~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~ 645 (664)
T 1c4o_A 610 RERIAELELAMWQAAEALDFERAARLRDEIRALEAR 645 (664)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 455788999999999999999999999999988753
No 10
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=41.13 E-value=86 Score=24.01 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 030838 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (170)
Q Consensus 84 cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeI 146 (170)
...+++.+|+.+-..++-.....+... ....+..+..+|..+...++|+.|+.+=.++
T Consensus 94 e~me~rE~lee~~~~~d~~~l~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl 151 (171)
T 1fpo_A 94 EQLELREELDEIEQAKDEARLESFIKR-----VKKMFDTRHQLMVEQLDNETWDAAADTCRKL 151 (171)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 356677777766544442222222222 2346777888899999999999998544333
No 11
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.34 E-value=24 Score=22.10 Aligned_cols=24 Identities=38% Similarity=0.319 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHH
Q 030838 118 EPIFRLRRLMKEAVAEERFEDAAR 141 (170)
Q Consensus 118 d~L~~L~~~L~~AIe~EdYE~AA~ 141 (170)
..+..|+..|+-|-++.+||.||.
T Consensus 20 aelknlkehlkfakaelefelaah 43 (46)
T 3he4_B 20 AELKNLKEHLKFAKAELEFELAAH 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhh
Confidence 356778888888999999999873
No 12
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=37.21 E-value=40 Score=23.75 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Q 030838 120 IFRLRRLMKEAVAEERFEDAARYR 143 (170)
Q Consensus 120 L~~L~~~L~~AIe~EdYE~AA~lR 143 (170)
+.+++.+..+||+.|+||.--.|=
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL 27 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLL 27 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445666666777777776544443
No 13
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=36.38 E-value=43 Score=18.97 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 030838 120 IFRLRRLMKEAVAEERFEDAA 140 (170)
Q Consensus 120 L~~L~~~L~~AIe~EdYE~AA 140 (170)
+.+-...|++-|+..+||-||
T Consensus 5 lkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 445556778888888999776
No 14
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=35.85 E-value=36 Score=24.81 Aligned_cols=31 Identities=42% Similarity=0.601 Sum_probs=21.8
Q ss_pred cCcchhHHHH---HHHHHHHHHhhhhHHHHHHHHHhh
Q 030838 114 FEEEEPIFRL---RRLMKEAVAEERFEDAARYRDKLK 147 (170)
Q Consensus 114 lKsEd~L~~L---~~~L~~AIe~EdYE~AA~lRDeIk 147 (170)
+..+..+.+| .++|.+||+.|++| .+||++-
T Consensus 56 fseerllsrlfeemdelreavekedwe---nlrdell 89 (114)
T 2p06_A 56 FSEERLLSRLFEEMDELREAVEKEDWE---NLRDELL 89 (114)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3344455555 45677899999999 6899873
No 15
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=35.00 E-value=85 Score=24.40 Aligned_cols=63 Identities=10% Similarity=0.217 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHH----------HHHHhhccCCC
Q 030838 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAAR----------YRDKLKEIAPN 152 (170)
Q Consensus 83 ~cYe~fk~qLe~AVerEDYEeAaklRd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~----------lRDeIk~Le~~ 152 (170)
....+++.+|+++-..++ ...+.. +.+..+..+..+|.++...++|+.|+. |.++|+..+|.
T Consensus 105 me~me~rE~leea~~~~~---l~~l~~-----~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik~we~g 176 (181)
T 3uo3_A 105 LKVLDIHDELSQMDDEAG---VKLLEK-----QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPG 176 (181)
T ss_dssp HHHHHHHHHHHHCCSHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhccCHHH---HHHHHH-----HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666777777643333 111222 223577888899999999999999985 45556555554
Q ss_pred C
Q 030838 153 S 153 (170)
Q Consensus 153 ~ 153 (170)
.
T Consensus 177 ~ 177 (181)
T 3uo3_A 177 K 177 (181)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=33.35 E-value=77 Score=22.27 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHH
Q 030838 85 YALLKQQMEVAAKTEDYKEAARI 107 (170)
Q Consensus 85 Ye~fk~qLe~AVerEDYEeAakl 107 (170)
+.++..+|..+|+.|+|++.-.+
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~L 26 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSL 26 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 56788899999999999998886
No 17
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.84 E-value=1.5e+02 Score=21.81 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=28.9
Q ss_pred HhhhcccCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 030838 108 RDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (170)
Q Consensus 108 Rd~ilelKsEd~L~~L~~~L~~AIe~EdYE~AA~lRDeI 146 (170)
-+.+....-...+..--.+|-+|+++.+|+.|-.+-=+|
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l 87 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSL 87 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444544444456666677899999999999998887666
No 18
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=28.68 E-value=61 Score=18.72 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=18.5
Q ss_pred ccCCCcccccchHHHHHHHHHHHHHhhh
Q 030838 70 RLSSSARSFLSRSQAYALLKQQMEVAAK 97 (170)
Q Consensus 70 ~~~~~~~~~l~~~~cYe~fk~qLe~AVe 97 (170)
+|.|++++ .|.+.+.+|.+.|..++.
T Consensus 2 rsksapts--pcdqeikelennirkals 27 (31)
T 2wh0_Q 2 RSKSAPTS--PCDQEIKELENNIRKALS 27 (31)
T ss_pred ccccCCCC--chHHHHHHHHHHHHHHhc
Confidence 34455554 588889999888887765
No 19
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=27.86 E-value=28 Score=18.97 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHhhcc
Q 030838 134 ERFEDAARYRDKLKEI 149 (170)
Q Consensus 134 EdYE~AA~lRDeIk~L 149 (170)
.+|..||.+|..+.+.
T Consensus 4 nrydqaatlrakmekr 19 (23)
T 3syn_E 4 NRYDQAATLRAKMEKR 19 (26)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3688888888877543
No 20
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=25.90 E-value=90 Score=20.15 Aligned_cols=32 Identities=16% Similarity=0.466 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 119 PIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 119 ~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
++..++.-+++|....+|++.+.|-.-++.|.
T Consensus 10 Q~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~ 41 (51)
T 1yzm_A 10 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQ 41 (51)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 55677788888999999999888877776663
No 21
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=24.45 E-value=46 Score=30.56 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHhhcc
Q 030838 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (170)
Q Consensus 118 d~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~L 149 (170)
..+..++.+.+.++..++|+.|+.+++++..+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (758)
T 3pxi_A 401 QKLDEVRKEKDAAVQSQEFEKAASLRDTEQRL 432 (758)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 35667778888999999999999999888765
No 22
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=23.85 E-value=84 Score=20.07 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHhhccC
Q 030838 119 PIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (170)
Q Consensus 119 ~L~~L~~~L~~AIe~EdYE~AA~lRDeIk~Le 150 (170)
++..++.-+++|....+||+.+.|..-++.|.
T Consensus 9 Q~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~ 40 (48)
T 3v1a_A 9 QIKNIHSFIHQAKAAGRMDEVRTLQENLHQLM 40 (48)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45567777888888899999988887777664
No 23
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=22.76 E-value=19 Score=31.55 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=10.6
Q ss_pred ccCCceeeEEEecCCCCCCC
Q 030838 45 KDLTRTYGIVACVGGGGGGS 64 (170)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~ 64 (170)
|-+.|+..+.||++|++.++
T Consensus 2 ~~~~~~~~l~aCg~~~~~~~ 21 (562)
T 2wol_A 2 TTAARRPAPTTAGAGWDAGV 21 (562)
T ss_dssp ------CGGGSCCSCTTTTS
T ss_pred CccccCccccccCCCCCCCc
Confidence 44678888999987766554
No 24
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.08 E-value=1.2e+02 Score=20.78 Aligned_cols=22 Identities=14% Similarity=0.437 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q 030838 123 LRRLMKEAVAEERFEDAARYRD 144 (170)
Q Consensus 123 L~~~L~~AIe~EdYE~AA~lRD 144 (170)
++.-+++|-+..+|++.+.|-.
T Consensus 32 I~~yI~qAk~~~r~DEV~tLe~ 53 (69)
T 1z0k_B 32 ITSFIRQAKAAGRMDEVRTLQE 53 (69)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHH
Confidence 3333444444444444444333
Done!