BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030840
         (170 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Kappa At 1.95a Resolution
          Length = 313

 Score = 29.3 bits (64), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 90  QAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANY 146
           + Q  SW   ++D+N+A+   G   +   D S  I +P+ + P    ++ AN I  Y
Sbjct: 55  EGQSASWDVAKKDQNRAKNRYGN--IIAYDHSRVILQPVEDDPS-SDYINANYIDGY 108


>pdb|3KLB|A Chain A, Crystal Structure Of Putative Flavoprotein In Complex
          With Fmn (Yp_213683.1) From Bacteroides Fragilis Nctc
          9343 At 1.75 A Resolution
          Length = 162

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 6  KLTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYD 48
          K+ + Y  C  +T  V    +A+  A + E++P+ P T+ D D
Sbjct: 6  KILVAYFSCSGVTKAVAEKLAAITGADLYEIKPEVPYTEADLD 48


>pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
           Is Achieved
 pdb|2QXF|A Chain A, Product Bound Structure Of Exonuclease I At 1.5 Angstrom
           Resolution
 pdb|3C94|A Chain A, ExoiSSB-Ct Complex
 pdb|3C95|A Chain A, Exonuclease I (Apo)
 pdb|3HL8|A Chain A, Crystal Structure Of Exonuclease I In Complex With
           Inhibitor Bcbp
 pdb|3HP9|A Chain A, Crystal Structure Of SsbEXONUCLEASE I IN COMPLEX WITH
           INHIBITOR CFAM
          Length = 482

 Score = 26.2 bits (56), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 19/89 (21%)

Query: 29  ISAFMTELEPDTPVTQ----------RDYDR----LQLSSSPFLERNMEFLIECMDDLSV 74
           + A   E EP TP              D DR    + L + P   RN+  L     D  +
Sbjct: 347 VVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEP---RNLPALDITFVDKRI 403

Query: 75  EQQKFQFYYRSL--TRQQAQQQSWLQKRR 101
           E+  F +  R+   T   A+QQ WL+ RR
Sbjct: 404 EKLLFNYRARNFPGTLDYAEQQRWLEHRR 432


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,754,929
Number of Sequences: 62578
Number of extensions: 177336
Number of successful extensions: 352
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 10
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)