Query 030840
Match_columns 170
No_of_seqs 102 out of 151
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1560 Translation initiation 100.0 1.8E-54 4E-59 368.2 13.2 165 3-169 170-336 (339)
2 cd08065 MPN_eIF3h Mpr1p, Pad1p 100.0 2.5E-35 5.4E-40 250.3 13.7 114 5-119 153-266 (266)
3 cd08069 MPN_RPN11_CSN5 Mov34/M 93.0 0.12 2.7E-06 44.3 3.9 27 12-38 175-201 (268)
4 cd08064 MPN_eIF3f Mpr1p, Pad1p 82.8 4 8.6E-05 34.7 6.2 66 12-86 139-204 (265)
5 KOG4538 Predicted coiled-coil 66.1 43 0.00092 25.9 7.3 53 60-112 41-93 (130)
6 cd00225 API3 Ascaris pepsin in 57.0 67 0.0015 25.9 7.2 57 74-132 34-91 (159)
7 PF14198 TnpV: Transposon-enco 50.4 20 0.00044 26.9 3.2 33 130-162 38-70 (111)
8 PF09454 Vps23_core: Vps23 cor 41.5 90 0.0019 21.3 5.0 41 58-98 24-64 (65)
9 PF12196 hNIFK_binding: FHA Ki 32.7 29 0.00062 22.0 1.3 28 95-129 14-41 (41)
10 KOG1760 Molecular chaperone Pr 29.6 2.6E+02 0.0057 21.9 6.4 52 69-120 12-64 (131)
11 KOG3682 Predicted membrane pro 28.6 4.6E+02 0.01 26.4 9.2 86 56-152 626-713 (930)
12 PF06324 Pigment_DH: Pigment-d 27.4 44 0.00095 17.6 1.2 10 25-34 1-10 (18)
13 PF05761 5_nucleotid: 5' nucle 26.4 2.4E+02 0.0052 26.2 6.8 72 62-148 344-415 (448)
14 PF10231 DUF2315: Uncharacteri 22.5 3.4E+02 0.0073 20.9 5.9 43 53-100 23-65 (126)
15 KOG1459 Squalene synthetase [L 22.0 69 0.0015 29.5 2.3 28 141-168 159-186 (413)
16 KOG2150 CCR4-NOT transcription 21.4 3.4E+02 0.0074 26.3 6.8 88 24-117 78-175 (575)
17 TIGR03017 EpsF chain length de 21.2 5.9E+02 0.013 22.6 10.3 36 71-106 336-371 (444)
No 1
>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-54 Score=368.21 Aligned_cols=165 Identities=38% Similarity=0.605 Sum_probs=156.6
Q ss_pred cccccCccccccceEEecceEechHHHHHHHhhcC--CCCCCCcCcCcccCCCCChhHHHHHHHHHHhHHHhHHHHHHHH
Q 030840 3 LIDKLTLGYCVCWFITLQVKVSNSALISAFMTELE--PDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQ 80 (170)
Q Consensus 3 ~~~~~~~~~~~~IfeEiPI~I~NS~Lv~a~L~eL~--~~~~~~~~~~d~L~ls~~~~Lek~le~L~~~vD~l~~Eq~k~~ 80 (170)
..++++++| ++||+||||+||||||+|++|++|+ .+.++....+..|||++...|+|+++.||++||++++|+++++
T Consensus 170 alk~~nlty-enmfeElPIVIknS~L~nvlmseLs~~e~c~sdk~~~~~fdlgs~t~leknir~lme~vDEl~qe~~~l~ 248 (339)
T KOG1560|consen 170 ALKSANLTY-ENMFEELPIVIKNSHLANVLMSELSEPEDCESDKPLHSNFDLGSGTRLEKNIRLLMERVDELHQEIVNLN 248 (339)
T ss_pred HHHhcCCCH-HHHHhhcCeeeeccHHHHHHHHhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999 9999999999999999999999997 4445555568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 030840 81 FYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSR 160 (170)
Q Consensus 81 ~yqR~~~rqq~~~~q~~~kRk~EN~~R~~~Ge~pLPeed~~~~~fK~p~ePSRL~slL~s~Qi~~yc~qi~~~~~~~l~K 160 (170)
+|||+++|||++++||++||++||+.|+++|+||||||| |.|+||+|++|.|||++|+|+||+++|++|..||+++|+|
T Consensus 249 kyqr~~~rqq~~~~q~~aKrqaENa~R~argep~lP~dd-~kr~fk~pq~p~rLdslLiS~qint~aq~ike~tSqnl~K 327 (339)
T KOG1560|consen 249 KYQRQLARQQAKKHQWIAKRQAENANRAARGEPPLPEDD-WKRIFKPPQEPRRLDSLLISGQINTSAQQIKEFTSQNLSK 327 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChHH-HHHHhcCCCchhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q 030840 161 LYLTKALHD 169 (170)
Q Consensus 161 lfl~~~l~~ 169 (170)
||++++++.
T Consensus 328 lfiaea~~~ 336 (339)
T KOG1560|consen 328 LFIAEALQE 336 (339)
T ss_pred HHHHHHHHH
Confidence 999999985
No 2
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=100.00 E-value=2.5e-35 Score=250.27 Aligned_cols=114 Identities=53% Similarity=0.863 Sum_probs=107.3
Q ss_pred cccCccccccceEEecceEechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHhHHHhHHHHHHHHHHHH
Q 030840 5 DKLTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYR 84 (170)
Q Consensus 5 ~~~~~~~~~~IfeEiPI~I~NS~Lv~a~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~le~L~~~vD~l~~Eq~k~~~yqR 84 (170)
+++++++ .+||+||||+|+||+|+++||++|.+..+.+.++|++|+|+++++|||+|+.|+++||+|++|++||++|||
T Consensus 153 ~~~~~~~-~~if~eiPv~i~n~~l~~~~L~~l~~~~~~~~~~~~~l~l~~~~~le~~l~~l~~~id~l~~e~~~~~~y~r 231 (266)
T cd08065 153 REANLTF-SNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLDLSTNSFLEKNLELLMESVDELSQEQGKFNYYQR 231 (266)
T ss_pred HHhcCch-hcEEEEEEEEEEchHHHHHHHHhcccCCCcccCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556776 999999999999999999999999877666556999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCC
Q 030840 85 SLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 119 (170)
Q Consensus 85 ~~~rqq~~~~q~~~kRk~EN~~R~~~Ge~pLPeed 119 (170)
+++|||++++||++|||+||++|+++|++|||+||
T Consensus 232 ~~~~~~~~~~~~~~kr~~en~~r~~~~~~~lp~~~ 266 (266)
T cd08065 232 NLARQQAQIQQWLQKRKAENAQREARGEEPLPEED 266 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999975
No 3
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=92.98 E-value=0.12 Score=44.31 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=25.0
Q ss_pred cccceEEecceEechHHHHHHHhhcCC
Q 030840 12 CVCWFITLQVKVSNSALISAFMTELEP 38 (170)
Q Consensus 12 ~~~IfeEiPI~I~NS~Lv~a~L~eL~~ 38 (170)
+.++|.||||.|+||+|.+++|..|..
T Consensus 175 ~~~~y~~l~i~~~~s~l~~~~L~~l~~ 201 (268)
T cd08069 175 HNKQYYSLPIEYFKSSLDRKLLLNLWN 201 (268)
T ss_pred hhcEEEEeeeEEecCHHHHHHHHHHHH
Confidence 389999999999999999999999854
No 4
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=82.85 E-value=4 Score=34.73 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=40.9
Q ss_pred cccceEEecceEechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 030840 12 CVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSL 86 (170)
Q Consensus 12 ~~~IfeEiPI~I~NS~Lv~a~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~le~L~~~vD~l~~Eq~k~~~yqR~~ 86 (170)
+..+|+|||++|+|+.-=..-+.-+........ ....+..+++.+..++-.|..-......|-+.+
T Consensus 139 ~~~~F~~ip~~i~~~eaE~i~v~~l~~~~~~~~---------~~~~~~~~l~~~~~al~~L~~~l~~i~~Yl~~V 204 (265)
T cd08064 139 LGSMFVPIPLELLYSEAERVALDLLAKTLASPS---------RSAPLTSDLEQLEASLEKLQEMLDRVLRYVEDV 204 (265)
T ss_pred cceEEEEcceeeecCcHHHHHHHHHHhhccCCc---------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999876666666643221111 011133666666666666665555555555543
No 5
>KOG4538 consensus Predicted coiled-coil protein [General function prediction only]
Probab=66.14 E-value=43 Score=25.90 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCC
Q 030840 60 RNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGE 112 (170)
Q Consensus 60 k~le~L~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~q~~~kRk~EN~~R~~~Ge 112 (170)
+.+..--+-=-++.+|-.-.-.+++.+.-.+-+-.|-...|+.||+.|+..+|
T Consensus 41 k~lr~sw~kKm~lr~e~~~vK~~~~~i~ek~~~~rqeKkqRrvEn~kRRLeNE 93 (130)
T KOG4538|consen 41 KTLRSSWDKKMELRAEKDMVKRVQDNIREKQVQERQEKKQRRVENEKRRLENE 93 (130)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444455666666666677777776666666667788899999888764
No 6
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=56.97 E-value=67 Score=25.90 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCC-CCCCCCCCCCCCCCCCCCc
Q 030840 74 VEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEE-PLPEEDPSNPIFKPIPEPP 132 (170)
Q Consensus 74 ~Eq~k~~~yqR~~~rqq~~~~q~~~kRk~EN~~R~~~Ge~-pLPeed~~~~~fK~p~ePS 132 (170)
.||.-|+.|+..++.-+....+-+..|+.-=..|++ |.. -+..-. ..++=|+|..||
T Consensus 34 ~Eq~el~~y~~d~~~yK~~~k~~l~er~~~~~~~~~-~~~~~~~~~~-~~~~Pk~PkkPs 91 (159)
T cd00225 34 DEQQELAQYVEDVADYKEEVKQALKERQEGLKLRRA-GKKKKAVTLA-EEKLPKAPKKPS 91 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-cccccccccc-cccCCCCCCCCC
Confidence 457888889888888877777666665543333333 421 111111 112447777776
No 7
>PF14198 TnpV: Transposon-encoded protein TnpV
Probab=50.35 E-value=20 Score=26.93 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=29.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 030840 130 EPPRLESFLIANRIANYCNQINGVTGQSFSRLY 162 (170)
Q Consensus 130 ePSRL~slL~s~Qi~~yc~qi~~~~~~~l~Klf 162 (170)
-|.+...|+++|.+..||.+|+.-|-+-+-.+.
T Consensus 38 ~p~~Y~~ll~~g~L~~~l~eid~~A~e~~e~l~ 70 (111)
T PF14198_consen 38 KPILYNNLLLSGKLNEHLAEIDEQAQERFERLV 70 (111)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999988776653
No 8
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.51 E-value=90 Score=21.27 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030840 58 LERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQ 98 (170)
Q Consensus 58 Lek~le~L~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~q~~~ 98 (170)
++..+..|-+++..=+-.-.-|-+.-|.++|+|--.-..++
T Consensus 24 ieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ral~~ 64 (65)
T PF09454_consen 24 IEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRALIQ 64 (65)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56667777777766666777889999999999876544443
No 9
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=32.74 E-value=29 Score=21.97 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=14.2
Q ss_pred HHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCC
Q 030840 95 SWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIP 129 (170)
Q Consensus 95 q~~~kRk~EN~~R~~~Ge~pLPeed~~~~~fK~p~ 129 (170)
.+++|||-|-+.---. .++|++ +||.|+
T Consensus 14 tfLErRKS~~~emndD-----d~D~EI--v~K~P~ 41 (41)
T PF12196_consen 14 TFLERRKSEVAEMNDD-----DEDDEI--VFKQPV 41 (41)
T ss_dssp HHHHHHHHHHHH--GG-----GGS-SE--EESS--
T ss_pred HHHHHhhhhhhcccCC-----CcCCee--EeccCC
Confidence 5788898776553211 123344 888774
No 10
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=29.55 E-value=2.6e+02 Score=21.90 Aligned_cols=52 Identities=21% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHcCCCCCCCCCC
Q 030840 69 MDDLSVEQQKFQFYYRSLTRQQAQQQSWLQ-KRRDENKARKAAGEEPLPEEDP 120 (170)
Q Consensus 69 vD~l~~Eq~k~~~yqR~~~rqq~~~~q~~~-kRk~EN~~R~~~Ge~pLPeed~ 120 (170)
|--.-.+|+|.|.|.|..+|.-....--.. |-..||-.-+..--.++.|||.
T Consensus 12 v~Vt~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~ 64 (131)
T KOG1760|consen 12 VKVTFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDE 64 (131)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCcccc
Confidence 334456899999999999998665554444 4456777766555577777643
No 11
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=28.57 E-value=4.6e+02 Score=26.42 Aligned_cols=86 Identities=20% Similarity=0.348 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcC--CCCCCCCCCCCCCCCCCCCCcc
Q 030840 56 PFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG--EEPLPEEDPSNPIFKPIPEPPR 133 (170)
Q Consensus 56 ~~Lek~le~L~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~q~~~kRk~EN~~R~~~G--e~pLPeed~~~~~fK~p~ePSR 133 (170)
..+|++|+++.+|=++++--++-....-|.+.+- ....-+.-||.-|=.|.=-- +--+|.-- .+-.|
T Consensus 626 ~~~eq~L~f~vecRe~f~~~~~~li~LI~S~n~l--a~~t~K~gkK~a~Fvr~Cia~~~~TIPSv~---------~p~~r 694 (930)
T KOG3682|consen 626 TNLEQCLEFIVECREDFGLRQNSLIHLIESLNQL--AHRTQKSGKKKADFVRVCIANLSLTIPSVR---------DPSRR 694 (930)
T ss_pred ccHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHhheeccccc---------ChhhH
Confidence 5599999999999999988888777777766532 11122222333344443221 22223211 13346
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 030840 134 LESFLIANRIANYCNQING 152 (170)
Q Consensus 134 L~slL~s~Qi~~yc~qi~~ 152 (170)
|+-+|.++||.-.+.-|.+
T Consensus 695 lnlyl~~~qvaLl~~~lsq 713 (930)
T KOG3682|consen 695 LNLYLQNIQVALLANFLSQ 713 (930)
T ss_pred hhhhhHHhHHHHHhChhhh
Confidence 9999999999876665544
No 12
>PF06324 Pigment_DH: Pigment-dispersing hormone (PDH); InterPro: IPR009396 This family consists of several eukaryotic pigment-dispersing hormone (PDH) proteins. The pigment-dispersing hormone (PDH) is produced in the eyestalks of Crustacea where it induces light-adapting movements of pigment in the compound eye and regulates the pigment dispersion in the chromatophores [].; GO: 0005179 hormone activity, 0009416 response to light stimulus, 0005576 extracellular region
Probab=27.36 E-value=44 Score=17.58 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=8.1
Q ss_pred chHHHHHHHh
Q 030840 25 NSALISAFMT 34 (170)
Q Consensus 25 NS~Lv~a~L~ 34 (170)
||.|+|++|.
T Consensus 1 NselINslLg 10 (18)
T PF06324_consen 1 NSELINSLLG 10 (18)
T ss_pred ChHHHHHHHc
Confidence 7888888875
No 13
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=26.44 E-value=2.4e+02 Score=26.19 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=42.4
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 030840 62 MEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIAN 141 (170)
Q Consensus 62 le~L~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~q~~~kRk~EN~~R~~~Ge~pLPeed~~~~~fK~p~ePSRL~slL~s~ 141 (170)
|..|...++++... --..|..++.++.+.+|.+.|+.-- .+.++. ... .|..+||.-..||+. +.
T Consensus 344 l~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-fn~--~~GslfRtg~~~s~F-----a~ 408 (448)
T PF05761_consen 344 LQELEELLEELQDH----LDQLRSSSELRPDISELRKERRELR---REMKEL-FNP--QFGSLFRTGHNPSYF-----AR 408 (448)
T ss_dssp HHHHHHHCHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCT-T-T--TT-BSSEETTEEBHH-----HH
T ss_pred HHHHHHHHHHHHHH----hcccccchhhHHHHHHHHHHHHHHH---HHHhhh-ccc--chHHHHhcCCCccHH-----HH
Confidence 44444444443333 2223478888899999998887422 222221 111 377899999999986 56
Q ss_pred HHHHHHH
Q 030840 142 RIANYCN 148 (170)
Q Consensus 142 Qi~~yc~ 148 (170)
||..||+
T Consensus 409 qv~RyAd 415 (448)
T PF05761_consen 409 QVERYAD 415 (448)
T ss_dssp HHHHH-S
T ss_pred HHHHHhh
Confidence 7777664
No 14
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=22.53 E-value=3.4e+02 Score=20.95 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCChhHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030840 53 SSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKR 100 (170)
Q Consensus 53 s~~~~Lek~le~L~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~q~~~kR 100 (170)
...+.||+-++.+...+++.|++ |+..+=.+=.+.++.+++++
T Consensus 23 ~nEt~lE~klR~~Rqe~~~wNq~-----FW~~~N~~F~~~K~~fi~~~ 65 (126)
T PF10231_consen 23 ENETPLERKLRLLRQETQEWNQE-----FWAKHNIRFSKEKEEFIESR 65 (126)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 44567999999999999999886 55555444455667888877
No 15
>KOG1459 consensus Squalene synthetase [Lipid transport and metabolism]
Probab=21.97 E-value=69 Score=29.46 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 030840 141 NRIANYCNQINGVTGQSFSRLYLTKALH 168 (170)
Q Consensus 141 ~Qi~~yc~qi~~~~~~~l~Klfl~~~l~ 168 (170)
..++.||.-+.+..|-+++|+|.+.++.
T Consensus 159 ~d~d~yChyvagLVg~glsrlf~~s~le 186 (413)
T KOG1459|consen 159 WDYDVYCHYVAGLVGIGLSRLFTASKLE 186 (413)
T ss_pred HHHHHHHHHHHHhhCCchHhhhhHHHHh
Confidence 4689999999999999999999988764
No 16
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.39 E-value=3.4e+02 Score=26.30 Aligned_cols=88 Identities=22% Similarity=0.372 Sum_probs=53.4
Q ss_pred echHHHHHHHhhcCC-CCCCCcCcCcccCCCCChhH-------HHHHHHHHHhHHHhHHHHHHHHH--HHHHHHHHHHHH
Q 030840 24 SNSALISAFMTELEP-DTPVTQRDYDRLQLSSSPFL-------ERNMEFLIECMDDLSVEQQKFQF--YYRSLTRQQAQQ 93 (170)
Q Consensus 24 ~NS~Lv~a~L~eL~~-~~~~~~~~~d~L~ls~~~~L-------ek~le~L~~~vD~l~~Eq~k~~~--yqR~~~rqq~~~ 93 (170)
.|--||..-|-.... ....-+--|+..-|+...-| ...++.|..+||+|+-+...|.- |.|.+.|.
T Consensus 78 d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh---- 153 (575)
T KOG2150|consen 78 DNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIERH---- 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 355566666655410 00000113555555555443 25788889999999887777765 44444433
Q ss_pred HHHHHHHHHhhHHHHHcCCCCCCC
Q 030840 94 QSWLQKRRDENKARKAAGEEPLPE 117 (170)
Q Consensus 94 ~q~~~kRk~EN~~R~~~Ge~pLPe 117 (170)
.|. +++.|+.-|....++..|+
T Consensus 154 -~~H-~~~lEliLr~L~N~E~~pe 175 (575)
T KOG2150|consen 154 -RWH-QQKLELILRLLDNDELDPE 175 (575)
T ss_pred -HHH-HHHHHHHHHHhhccccCHH
Confidence 443 5778999999998888776
No 17
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.15 E-value=5.9e+02 Score=22.59 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 030840 71 DLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKA 106 (170)
Q Consensus 71 ~l~~Eq~k~~~yqR~~~rqq~~~~q~~~kRk~EN~~ 106 (170)
.+...+..|..-+|.+.-.+.....+++|+++-..+
T Consensus 336 ~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 336 ELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555567777888887788888888887655443
Done!