Query 030840
Match_columns 170
No_of_seqs 102 out of 151
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 08:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 86.0 1.3 4.3E-05 37.5 5.8 113 13-155 193-305 (306)
2 4b4t_U RPN8, 26S proteasome re 65.1 1.3 4.5E-05 37.8 0.0 59 58-119 274-332 (338)
3 1f32_A Major pepsin inhibitor 54.4 11 0.00039 28.8 3.5 34 73-106 98-131 (149)
4 2f6m_A Suppressor protein STP2 34.0 74 0.0025 21.0 4.7 42 58-99 18-59 (65)
5 3iot_A Maltose-binding protein 29.9 41 0.0014 28.2 3.6 34 68-102 360-393 (449)
6 3ogl_Q JAZ1 incomplete degron 21.4 57 0.002 17.0 1.8 12 91-102 8-19 (21)
7 3ogk_Q JAZ1 incomplete degron 18.4 67 0.0023 16.9 1.7 12 91-102 3-14 (22)
8 1sse_A AP-1 like transcription 18.0 18 0.00063 21.2 -0.7 14 142-155 20-33 (35)
9 3plv_C 66 kDa U4/U6.U5 small n 17.6 85 0.0029 16.3 2.0 14 103-116 7-20 (21)
10 3hd7_A Vesicle-associated memb 15.3 2.8E+02 0.0096 18.7 4.9 30 60-89 33-62 (91)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.01 E-value=1.3 Score=37.49 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=58.9
Q ss_pred ccceEEecceEechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 030840 13 VCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQ 92 (170)
Q Consensus 13 ~~IfeEiPI~I~NS~Lv~a~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~le~L~~~vD~l~~Eq~k~~~yqR~~~rqq~~ 92 (170)
.+.|.++||.++.|.|-..+|..|..... .-.|+..++ .++.+...+++.++.. ....|.+.+..++..
T Consensus 193 ~~~yy~l~i~~~ks~le~~~L~~L~~~~w-------~~~l~~~~~-~~~~~~~~~~i~~m~~---~~~~y~k~v~~e~~~ 261 (306)
T 4b4t_V 193 NRHYYSLNIDYHKTAKETKMLMNLHKEQW-------QSGLKMYDY-EEKEESNLAATKSMVK---IAEQYSKRIEEEKEL 261 (306)
T ss_dssp ---CEEECSCCCCCSSCTHHHHHHHHC-----------------C-HHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHH
T ss_pred cceEEEeeeEEEeCcHHHHHHHHHHhccc-------ccccccCcH-HHHHHHHHHHHHHHHH---HHHHHHHHHHccccC
Confidence 56799999999999999999988854321 112333333 3444544555555433 233455555544333
Q ss_pred HHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhHH
Q 030840 93 QQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTG 155 (170)
Q Consensus 93 ~~q~~~kRk~EN~~R~~~Ge~pLPeed~~~~~fK~p~ePSRL~slL~s~Qi~~yc~qi~~~~~ 155 (170)
-..++. .+. .+.-|+. + .-....+.|+.++-++.+|-.|+.++.
T Consensus 262 ~~~~l~--------~~~-----vgk~dp~-~-----~l~~~~~~l~~~ni~~~l~~~~~~~~~ 305 (306)
T 4b4t_V 262 TEEELK--------TRY-----VGRQDPK-K-----HLSETADETLENNIVSVLTAGVNSVAI 305 (306)
T ss_dssp HHHHHH--------HTC-----SCSSCCS-S-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHH--------hhc-----cCccChH-H-----HHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 222211 011 1111210 0 012345889999999999999998764
No 2
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.10 E-value=1.3 Score=37.76 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCC
Q 030840 58 LERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 119 (170)
Q Consensus 58 Lek~le~L~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~q~~~kRk~EN~~R~~~Ge~pLPeed 119 (170)
|--+|-.|+.++-+|+.-.+|..+++|. ++.+...|..|++.+++.+...+++..|..+
T Consensus 274 mv~YLs~L~rs~~al~eli~nk~~~~~~---~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 332 (338)
T 4b4t_U 274 MVIYISNLVRSIIAFDDLIENKIQNKKI---QEQRVKDKQSKVSDDSESESGDKEATAPLIQ 332 (338)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhcccccccccccccccccCCccc
Confidence 4467778889999999998888765554 5667788999999999999888887665543
No 3
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=54.45 E-value=11 Score=28.83 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 030840 73 SVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKA 106 (170)
Q Consensus 73 ~~Eq~k~~~yqR~~~rqq~~~~q~~~kRk~EN~~ 106 (170)
..|+..+..|...++--+.+.+-|..+|.-++.+
T Consensus 98 ~~Eq~EL~~y~~k~~a~eer~e~~~~~~~~~k~~ 131 (149)
T 1f32_A 98 AKDHAEVQTFREKIAAFEEQQENQPPSSGMPHGA 131 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCCC
Confidence 4578888888888776666666666666554433
No 4
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=34.00 E-value=74 Score=20.99 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030840 58 LERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQK 99 (170)
Q Consensus 58 Lek~le~L~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~q~~~k 99 (170)
+|..+..|-++++.=.-+-.-|-+.-|.++|+|--.-.-++|
T Consensus 18 ieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Rali~K 59 (65)
T 2f6m_A 18 LTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQR 59 (65)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666778899999999998876665554
No 5
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=29.89 E-value=41 Score=28.24 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=12.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030840 68 CMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRD 102 (170)
Q Consensus 68 ~vD~l~~Eq~k~~~yqR~~~rqq~~~~q~~~kRk~ 102 (170)
.++++..+......+. .+.++|+..+||+++..+
T Consensus 360 al~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~ 393 (449)
T 3iot_A 360 ALAAAQTNAAAMATLE-KLMKAFESLKSFQQQQQQ 393 (449)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHhhhH-HHHHHHHHHHhhcccccc
Confidence 3444444444433332 224444445555444433
No 6
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=21.37 E-value=57 Score=17.05 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q 030840 91 AQQQSWLQKRRD 102 (170)
Q Consensus 91 ~~~~q~~~kRk~ 102 (170)
+-.+.|++|||.
T Consensus 8 ~SLqRFleKRk~ 19 (21)
T 3ogl_Q 8 ASLHRFLEKRKD 19 (26)
T ss_pred HHHHHHHHHhhc
Confidence 456789999984
No 7
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=18.35 E-value=67 Score=16.94 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q 030840 91 AQQQSWLQKRRD 102 (170)
Q Consensus 91 ~~~~q~~~kRk~ 102 (170)
+-.+.|++|||.
T Consensus 3 ~SLqRFleKRk~ 14 (22)
T 3ogk_Q 3 ASLHRFLEKRKD 14 (26)
T ss_pred hhHHHHHHHHHH
Confidence 346789999985
No 8
>1sse_A AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=17.96 E-value=18 Score=21.20 Aligned_cols=14 Identities=29% Similarity=0.961 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhHH
Q 030840 142 RIANYCNQINGVTG 155 (170)
Q Consensus 142 Qi~~yc~qi~~~~~ 155 (170)
||+.+|..+++.||
T Consensus 20 qV~~FC~kln~aCG 33 (35)
T 1sse_A 20 QVSEFCSKMNQVCG 33 (35)
T ss_dssp SSSHHHHHHHHTTS
T ss_pred HhhHHHHHHHHHhc
Confidence 67788888888776
No 9
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=17.61 E-value=85 Score=16.28 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.4
Q ss_pred hhHHHHHcCCCCCC
Q 030840 103 ENKARKAAGEEPLP 116 (170)
Q Consensus 103 EN~~R~~~Ge~pLP 116 (170)
-|.-|.+.|..|+|
T Consensus 7 tnk~r~~lGLkplp 20 (21)
T 3plv_C 7 TNELRASLGLKLIP 20 (26)
T ss_dssp HHHHHHHTTCCCCC
T ss_pred HHHHHHHcCCCCCC
Confidence 47788899988876
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=15.29 E-value=2.8e+02 Score=18.75 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=20.8
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 030840 60 RNMEFLIECMDDLSVEQQKFQFYYRSLTRQ 89 (170)
Q Consensus 60 k~le~L~~~vD~l~~Eq~k~~~yqR~~~rq 89 (170)
..|+.|.+--|+|+.+...|..--|.+.|.
T Consensus 33 ekL~~L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 33 QKLSELDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777877777777666665544
Done!