BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030842
MALSLSLHLPVTPVLPKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVLVKAVERSQE
SAEKSETVNEPESEPANPATESSAELSELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIE
WPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFFR

High Scoring Gene Products

Symbol, full name Information P value
SECE1 protein from Arabidopsis thaliana 5.3e-17

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030842
        (170 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2130409 - symbol:SECE1 species:3702 "Arabidops...   209  5.3e-17   1


>TAIR|locus:2130409 [details] [associations]
            symbol:SECE1 species:3702 "Arabidopsis thaliana"
            [GO:0006605 "protein targeting" evidence=IEA] [GO:0006886
            "intracellular protein transport" evidence=IEA] [GO:0009306
            "protein secretion" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0015450 "P-P-bond-hydrolysis-driven protein
            transmembrane transporter activity" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0010027 "thylakoid membrane organization" evidence=ISS]
            InterPro:IPR001901 InterPro:IPR005807 Pfam:PF00584 GO:GO:0016021
            GO:GO:0006605 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009306
            GO:GO:0009535 EMBL:AL161540 EMBL:Z97337 GO:GO:0015450 EMBL:AY045827
            EMBL:AY096484 IPI:IPI00540557 PIR:H71411 RefSeq:NP_567446.1
            UniGene:At.4305 IntAct:O23342 STRING:O23342 PaxDb:O23342
            PRIDE:O23342 EnsemblPlants:AT4G14870.1 GeneID:827144
            KEGG:ath:AT4G14870 TAIR:At4g14870 eggNOG:NOG259337
            HOGENOM:HOG000240710 InParanoid:O23342 OMA:EMTEIEW PhylomeDB:O23342
            ProtClustDB:CLSN2717841 Genevestigator:O23342 TIGRFAMs:TIGR00964
            Uniprot:O23342
        Length = 177

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 51/130 (39%), Positives = 64/130 (49%)

Query:    46 KNRSVLVKAVERSQESA---EKSETVNEPESEPAN---PATXXXXXXXXXXXXXXXXXXX 99
             K+   + KA+E+ +++A    +SE    P  E  +                         
Sbjct:    47 KSACFVAKAIEQRRDTAGSESESEATPSPAEESGSGEDKEVEISAIGAEIKAAMEQRKTA 106

Query:   100 XXXXXAGDLLSGVGEEIREIEWPAFXXXXXXXXXXXXXIAGSSVVLLTVNFVLAELSDRA 159
                    + LSGV EE++EIEWPAF             IAGSSVVLLTVNF+LAELSDR 
Sbjct:   107 EEEKGKNEFLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVVLLTVNFLLAELSDRV 166

Query:   160 FAGRGVQDFF 169
             F GRGVQDFF
Sbjct:   167 FIGRGVQDFF 176


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       120   0.00091  102 3  11 23  0.41    31
                                                     29  0.48    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  105 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.57u 0.15s 10.72t   Elapsed:  00:00:01
  Total cpu time:  10.57u 0.15s 10.72t   Elapsed:  00:00:01
  Start:  Fri May 10 00:03:11 2013   End:  Fri May 10 00:03:12 2013

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