BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030842
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23342|SECE1_ARATH Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana
GN=SECE1 PE=1 SV=1
Length = 177
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 121/182 (66%), Gaps = 19/182 (10%)
Query: 1 MALSLSLHLPVTPVLPKAYVQSKPPPVSH---YISLRRLRLTSATALGKNRSVLVKAVER 57
M+L+ PVT + ++ P +S+ + +R + + L K+ + KA+E+
Sbjct: 1 MSLTAQFSPPVTGITRS--LRDTKPSLSNLRVFPVYTEIRTMTTSNLRKSACFVAKAIEQ 58
Query: 58 SQESAEKSETVNEPESEPANPATESSA------ELSELGSEIKKVLKEKK--EEKAG--D 107
+++A SE+ E E+ P+ PA ES + E+S +G+EIK ++++K EE+ G +
Sbjct: 59 RRDTA-GSES--ESEATPS-PAEESGSGEDKEVEISAIGAEIKAAMEQRKTAEEEKGKNE 114
Query: 108 LLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQD 167
LSGV EE++EIEWPAF KVLGTTGVVLGVIAGSSVVLLTVNF+LAELSDR F GRGVQD
Sbjct: 115 FLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVVLLTVNFLLAELSDRVFIGRGVQD 174
Query: 168 FF 169
FF
Sbjct: 175 FF 176
>sp|Q28021|ROCK2_BOVIN Rho-associated protein kinase 2 OS=Bos taurus GN=ROCK2 PE=1 SV=1
Length = 1388
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 15 LPKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVLVKAVERSQESAEKSETVNEPESE 74
+PKA+V ++ P + L L+ + + +N S+ + E SQE +K T+ E S
Sbjct: 399 IPKAFVGNQLPFIGFTYYRENLLLSDSPSCKENDSIQSRKNEESQEIQKKLYTLEEHLST 458
Query: 75 PANPATESSAELSELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIE 120
E + + + ++KV KE +EE L V +R++E
Sbjct: 459 EIQAKEELEQKCKSVNTRLEKVAKELEEEIT--LRKNVESTLRQLE 502
>sp|P35874|SECE_THEMA Preprotein translocase subunit SecE OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=secE PE=1
SV=1
Length = 65
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 103 EKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAG 162
EK V E ++I WP+ ++L + GVVL ++A +SV ++F+ + + F
Sbjct: 2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA 61
Query: 163 RGV 165
G+
Sbjct: 62 LGI 64
>sp|Q30NY7|MOAC_SULDN Cyclic pyranopterin monophosphate synthase accessory protein
OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=moaC PE=3 SV=1
Length = 156
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 109 LSGVGEEIREI-EWPAF-----GKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAG 162
LSG+ ++ E+ E P F K+ G TGV + + G+S+ LLT+ + + + D+
Sbjct: 80 LSGINCDVEELPELPGFKLSVTAKLTGQTGVEMEALTGTSIGLLTI-YDMVKAIDKGMVI 138
Query: 163 RGVQ 166
R +Q
Sbjct: 139 RNIQ 142
>sp|O75116|ROCK2_HUMAN Rho-associated protein kinase 2 OS=Homo sapiens GN=ROCK2 PE=1 SV=4
Length = 1388
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 15 LPKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVLVKAVERSQESAEKSETVNEPESE 74
+PKA+V ++ P + L L+ + + + S+ + E SQE +K T+ E S
Sbjct: 399 IPKAFVGNQLPFIGFTYYRENLLLSDSPSCRETDSIQSRKNEESQEIQKKLYTLEEHLSN 458
Query: 75 PANPATESSAELSELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIE 120
E + + + ++K KE +EE L V +R++E
Sbjct: 459 EMQAKEELEQKCKSVNTRLEKTAKELEEEIT--LRKSVESALRQLE 502
>sp|P70336|ROCK2_MOUSE Rho-associated protein kinase 2 OS=Mus musculus GN=Rock2 PE=1 SV=1
Length = 1388
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 15 LPKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVLVKAVERSQESAEKSETVNEPESE 74
+PKA+V ++ P + L L+ + +N ++ + E SQE +K + E S
Sbjct: 399 IPKAFVGNQLPFIGFTYFRENLLLSDSPPCRENDAIQTRKSEESQEIQKKLYALEEHLSS 458
Query: 75 PANPATESSAELSELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIE 120
E + + + ++K KE +EE L V +R++E
Sbjct: 459 EVQAKEELEQKCKSINTRLEKTAKELEEEIT--LRKSVESTLRQLE 502
>sp|Q62868|ROCK2_RAT Rho-associated protein kinase 2 OS=Rattus norvegicus GN=Rock2 PE=1
SV=2
Length = 1388
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 40/89 (44%)
Query: 15 LPKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVLVKAVERSQESAEKSETVNEPESE 74
+PKA+V ++ P + L L+ + +N ++ + E SQE +K + E S
Sbjct: 399 IPKAFVGNQLPFIGFTYFRENLLLSDSPPCRENDAIQTRKSEESQEIQKKLYALEEHLSS 458
Query: 75 PANPATESSAELSELGSEIKKVLKEKKEE 103
E + + + ++K KE +EE
Sbjct: 459 EVQAKEELEQKCKSINTRLEKTAKELEEE 487
>sp|A3QH04|RLMG_SHELP Ribosomal RNA large subunit methyltransferase G OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rlmG PE=3 SV=1
Length = 401
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 30/48 (62%)
Query: 27 VSHYISLRRLRLTSATALGKNRSVLVKAVERSQESAEKSETVNEPESE 74
+ +++ L+R+ TA + V+++A++ ++E + ++ VNEP+ +
Sbjct: 353 LGYHVKLKRIFKNCETAASNGKFVILRAIKSAKEPVKPAKDVNEPDHQ 400
>sp|A9WPN2|GATA_RENSM Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Renibacterium
salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484
/ NBRC 15589 / NCIMB 2235) GN=gatA PE=3 SV=1
Length = 520
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 86 LSELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVL 135
+ ELG E + E + ++ +LL G G EI E+ P+FG LG +++
Sbjct: 275 VKELGGEGYQEGVEVRFRESLELLRGAGAEIVEVSCPSFGYALGAYYLIM 324
>sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix
orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3
SV=1
Length = 301
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 109 LSGVGEEIREIEWPAFG----------KVLG------TTGVVLGVIAGSSVVLLTVNFVL 152
L +G+++ E++W F KVL TT V++G++ + L V V
Sbjct: 96 LEVIGQDVLEVDWKHFFDSRGISDRSVKVLANLPYYITTPVIMGLLESNITFSLMVLMVQ 155
Query: 153 AELSDRAFAGRGVQDF 168
E++DR A G +D+
Sbjct: 156 KEVADRMAAAPGSKDY 171
>sp|B1XN05|CYSC_SYNP2 Adenylyl-sulfate kinase OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=cysC PE=3 SV=1
Length = 177
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 68 VNEPESEPANPATESSAELSELGSEIKKVLKEKKE 102
+++P P NP E +L EL I+KV+K+ E
Sbjct: 137 IDDPYEAPTNPEVECRTDLEELEESIEKVMKKLTE 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,595,276
Number of Sequences: 539616
Number of extensions: 2295265
Number of successful extensions: 12174
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 11908
Number of HSP's gapped (non-prelim): 410
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)