Query 030842
Match_columns 170
No_of_seqs 21 out of 23
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 05:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00584 SecE: SecE/Sec61-gamm 98.9 1.1E-10 2.5E-15 77.0 -1.9 55 106-160 3-57 (57)
2 PRK07597 secE preprotein trans 98.6 2.2E-09 4.7E-14 73.0 -1.7 54 104-157 9-62 (64)
3 COG0690 SecE Preprotein transl 98.6 8.7E-09 1.9E-13 73.0 -0.5 58 99-156 14-71 (73)
4 TIGR00964 secE_bact preprotein 98.5 8.1E-09 1.8E-13 68.9 -1.2 51 107-157 3-53 (55)
5 PRK05740 secE preprotein trans 98.4 6.2E-08 1.3E-12 71.0 0.5 59 102-160 33-91 (92)
6 PLN02601 beta-carotene hydroxy 42.0 24 0.00052 32.1 2.8 18 44-61 41-58 (303)
7 PF14435 SUKH-4: SUKH-4 immuni 41.5 31 0.00067 26.3 3.0 33 84-116 144-179 (179)
8 COG1970 MscL Large-conductance 33.9 51 0.0011 26.7 3.3 43 49-100 88-130 (130)
9 PF12794 MscS_TM: Mechanosensi 29.8 52 0.0011 28.7 2.8 53 46-98 255-309 (340)
10 PRK13955 mscL large-conductanc 29.7 78 0.0017 25.3 3.6 18 86-103 111-128 (130)
11 PF13908 Shisa: Wnt and FGF in 28.2 24 0.00052 27.6 0.5 19 130-148 77-95 (179)
12 PF10873 DUF2668: Protein of u 26.6 85 0.0019 26.3 3.4 38 126-164 56-93 (155)
13 PF06624 RAMP4: Ribosome assoc 25.1 28 0.0006 24.7 0.3 22 120-144 34-55 (63)
14 PRK13953 mscL large-conductanc 24.4 1.1E+02 0.0024 24.3 3.6 15 87-101 110-124 (125)
15 PF08078 PsaX: PsaX family; I 23.3 61 0.0013 21.6 1.6 15 140-154 17-31 (37)
16 PLN02956 PSII-Q subunit 22.3 1.2E+02 0.0027 25.7 3.7 37 1-37 1-39 (185)
No 1
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=98.88 E-value=1.1e-10 Score=77.04 Aligned_cols=55 Identities=18% Similarity=0.394 Sum_probs=52.0
Q ss_pred cCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHh
Q 030842 106 GDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAF 160 (170)
Q Consensus 106 ~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF 160 (170)
.+|++++.+|+++|+||+++.++.+|++|+.+++..++++..+|.++..+.+.+|
T Consensus 3 ~~f~~~~~~Elkkv~WP~~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~~~~i~ 57 (57)
T PF00584_consen 3 KNFFREVKKELKKVTWPSRKELLKSTIIVLVFVIIFGLFFFLVDLIFSWLLNLIL 57 (57)
T ss_dssp HHHHHCHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3689999999999999999999999999999999999999999999999988765
No 2
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=98.65 E-value=2.2e-09 Score=73.02 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=50.1
Q ss_pred hhcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhH
Q 030842 104 KAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSD 157 (170)
Q Consensus 104 e~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd 157 (170)
.-.+|++++.+|+++|.||+++.++.+|++|+.+++..++++..+|.++..+-+
T Consensus 9 ~~~~f~~~~~~ElkkV~WPs~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~~~ 62 (64)
T PRK07597 9 KLKKFFKDVKAELKKVTWPTRKELVRSTIVVLVFVAFFALFFYLVDLLFSKLIS 62 (64)
T ss_pred HHHHHHHHHHHHHhhCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999999887654
No 3
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=98.57 E-value=8.7e-09 Score=72.97 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=52.0
Q ss_pred HhhhhhhcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhh
Q 030842 99 EKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELS 156 (170)
Q Consensus 99 erk~~e~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELS 156 (170)
..+-+.--+|+.++.+|+++|+||++..++.+|.+||.++++-++++..+|.++..+-
T Consensus 14 ~~~~k~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~i 71 (73)
T COG0690 14 TKKGKKFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKLV 71 (73)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455899999999999999999999999999999999999999999999987663
No 4
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=98.54 E-value=8.1e-09 Score=68.91 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=48.1
Q ss_pred CccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhH
Q 030842 107 DLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSD 157 (170)
Q Consensus 107 nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd 157 (170)
+|++++..|+++|.||+++.+...|++|+..++..++++..+|.++..+-+
T Consensus 3 ~f~~~~~~ElkkV~WPt~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~~~ 53 (55)
T TIGR00964 3 KFFKEVKAELKKVVWPSRKELITYTIVVIVFVIFFSLFLFGVDYVFGKLIS 53 (55)
T ss_pred hHHHHHHHHHhcCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999987654
No 5
>PRK05740 secE preprotein translocase subunit SecE; Reviewed
Probab=98.41 E-value=6.2e-08 Score=71.05 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=54.1
Q ss_pred hhhhcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHh
Q 030842 102 EEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAF 160 (170)
Q Consensus 102 ~~e~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF 160 (170)
-++-.+|+.++..|+++|.||+++.++.+|++|+.+++-.++++..+|.++..+-+.++
T Consensus 33 ~~~~~~F~k~v~~ElkKV~WPtr~e~~~~t~~Viv~~~i~~l~i~~~D~~~~~li~~i~ 91 (92)
T PRK05740 33 GKAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLDSILVWLISFIT 91 (92)
T ss_pred cHHHHHHHHHHHHHhhhccCcCHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556899999999999999999999999999999999999999999999998887654
No 6
>PLN02601 beta-carotene hydroxylase
Probab=41.98 E-value=24 Score=32.08 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=8.9
Q ss_pred cccccchhHHHHHhhccc
Q 030842 44 LGKNRSVLVKAVERSQES 61 (170)
Q Consensus 44 ~~~~~~~~~~ave~~~~s 61 (170)
++|+++.+--++|+.+++
T Consensus 41 ~~~~~~~~c~v~~~~~~~ 58 (303)
T PLN02601 41 RRRKILTVCFVVEERKQS 58 (303)
T ss_pred ccCCceeEEEEecccccc
Confidence 445554444455655443
No 7
>PF14435 SUKH-4: SUKH-4 immunity protein
Probab=41.48 E-value=31 Score=26.30 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHHHHHHhhhh---hhcCccchHHhhh
Q 030842 84 AELSELGSEIKKVLKEKKEE---KAGDLLSGVGEEI 116 (170)
Q Consensus 84 a~~selgaeik~~~~erk~~---e~~nf~~GVaEEi 116 (170)
.....++.++++.+++--.. +..+||..++|||
T Consensus 144 ~~~~~~~~~l~~~l~~iDp~a~~~~~~~W~~~le~l 179 (179)
T PF14435_consen 144 DEPEALAERLREELRAIDPAAFADEESFWSVVLEEL 179 (179)
T ss_pred hhHHHHHHHHHHHHHHhChHhhCCCCCcHHHHHhhC
Confidence 34557888888877776654 4799999999986
No 8
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=33.94 E-value=51 Score=26.75 Aligned_cols=43 Identities=30% Similarity=0.430 Sum_probs=23.6
Q ss_pred chhHHHHHhhccccccccCCCCCCCCCCCCCCCChhhhhHHHHHHHHHHHHh
Q 030842 49 SVLVKAVERSQESAEKSETVNEPESEPANPATESSAELSELGSEIKKVLKEK 100 (170)
Q Consensus 49 ~~~~~ave~~~~s~~~~e~~~~p~~~~~~~~e~~~a~~selgaeik~~~~er 100 (170)
-++.|++++-+...++ | .+++ + ++...+..+|-.|||.+++++
T Consensus 88 Fl~Vk~inkl~~~~~~-~-~~e~------~-~~~~~~e~~LLtEIRDLL~~~ 130 (130)
T COG1970 88 FLVVKAINKLRRKLEK-E-EPEA------P-APAPPAEEVLLTEIRDLLKKQ 130 (130)
T ss_pred HHHHHHHHHHHHHHhc-c-ccCC------C-CCCCchHHHHHHHHHHHHhcC
Confidence 4567888866655431 2 1111 1 111112348999999998764
No 9
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=29.80 E-value=52 Score=28.70 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=27.1
Q ss_pred cccchhHHHHHhhcccccccc-CCCCCCCC-CCCCCCCChhhhhHHHHHHHHHHH
Q 030842 46 KNRSVLVKAVERSQESAEKSE-TVNEPESE-PANPATESSAELSELGSEIKKVLK 98 (170)
Q Consensus 46 ~~~~~~~~ave~~~~s~~~~e-~~~~p~~~-~~~~~e~~~a~~selgaeik~~~~ 98 (170)
+||.-..+|.|++++.....+ .+++.+.| ...+.|+..-..++|.+|-+++++
T Consensus 255 ~RRLA~~Ra~~kR~~~~aqr~~~e~~~~~e~~~~~~ee~~ldl~~I~~QslrL~~ 309 (340)
T PF12794_consen 255 RRRLAYERAKEKRAEALAQREAEEEESSEEGGAEEVEEPELDLEQISQQSLRLLR 309 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCccccCCCcCCcccCHHHHHHHHHHHHH
Confidence 456666777777666432111 01011111 122344444557788888888754
No 10
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=29.65 E-value=78 Score=25.28 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHhhhh
Q 030842 86 LSELGSEIKKVLKEKKEE 103 (170)
Q Consensus 86 ~selgaeik~~~~erk~~ 103 (170)
..++-.|||.++++|...
T Consensus 111 ~~~lL~eIrdlL~~~~~~ 128 (130)
T PRK13955 111 EEELLGEIRDLLKQQNSS 128 (130)
T ss_pred HHHHHHHHHHHHHhcccC
Confidence 347899999998877643
No 11
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=28.18 E-value=24 Score=27.57 Aligned_cols=19 Identities=32% Similarity=0.761 Sum_probs=12.0
Q ss_pred ccceeEeEEeechhhHHHH
Q 030842 130 TTGVVLGVIAGSSVVLLTV 148 (170)
Q Consensus 130 TTGVVL~II~GSs~vLLtV 148 (170)
.++|+++||+|..++++.|
T Consensus 77 ~~~iivgvi~~Vi~Iv~~I 95 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLI 95 (179)
T ss_pred eeeeeeehhhHHHHHHHhH
Confidence 4667777777766554443
No 12
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=26.63 E-value=85 Score=26.25 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=29.1
Q ss_pred ccccccceeEeEEeechhhHHHHHHHHHHhhHHHhcCCC
Q 030842 126 KVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRG 164 (170)
Q Consensus 126 kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF~g~g 164 (170)
.+|. +..|-|||||.-++|++|-++-.-+.--+++++|
T Consensus 56 ~~ls-gtAIaGIVfgiVfimgvva~i~icvCmc~kn~rg 93 (155)
T PF10873_consen 56 DVLS-GTAIAGIVFGIVFIMGVVAGIAICVCMCMKNSRG 93 (155)
T ss_pred cccc-cceeeeeehhhHHHHHHHHHHHHHHhhhhhcCCC
Confidence 4444 3456788888888888888888888888888887
No 13
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=25.12 E-value=28 Score=24.69 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=14.3
Q ss_pred ccCCCcccccccceeEeEEeechhh
Q 030842 120 EWPAFGKVLGTTGVVLGVIAGSSVV 144 (170)
Q Consensus 120 EWPt~~kvLgTTGVVL~II~GSs~v 144 (170)
.-|--.-.| |+.++||+||+++
T Consensus 34 k~pVgp~~L---~l~iFVV~Gs~if 55 (63)
T PF06624_consen 34 KYPVGPWLL---GLFIFVVCGSAIF 55 (63)
T ss_pred cCCcCHHHH---hhhheeeEcHHHH
Confidence 344444444 3778899999876
No 14
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=24.42 E-value=1.1e+02 Score=24.27 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHhh
Q 030842 87 SELGSEIKKVLKEKK 101 (170)
Q Consensus 87 selgaeik~~~~erk 101 (170)
.++-.|||.++++|+
T Consensus 110 ~~lL~eIrD~L~~~~ 124 (125)
T PRK13953 110 EEYLKEIRDLLKQQQ 124 (125)
T ss_pred HHHHHHHHHHHHhhc
Confidence 378899999988765
No 15
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=23.34 E-value=61 Score=21.56 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=12.3
Q ss_pred echhhHHHHHHHHHH
Q 030842 140 GSSVVLLTVNFVLAE 154 (170)
Q Consensus 140 GSs~vLLtVNa~LAE 154 (170)
|=+++||.+|++.|.
T Consensus 17 ~Wa~llLaINflVAa 31 (37)
T PF08078_consen 17 GWALLLLAINFLVAA 31 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 446799999999885
No 16
>PLN02956 PSII-Q subunit
Probab=22.28 E-value=1.2e+02 Score=25.73 Aligned_cols=37 Identities=38% Similarity=0.274 Sum_probs=18.8
Q ss_pred Cccce-eeeccccccCCccccccCCCCccccc-hhhhhh
Q 030842 1 MALSL-SLHLPVTPVLPKAYVQSKPPPVSHYI-SLRRLR 37 (170)
Q Consensus 1 mal~l-s~~~p~t~~~~~~~~q~k~~~~s~~~-~~~~~~ 37 (170)
|||.+ -.+++++--.|.-+.-.||.|-++.- +|++.+
T Consensus 1 mal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (185)
T PLN02956 1 MALRLAVQALSATHLSPAFICCLKPTFPSKGNTSRRPLR 39 (185)
T ss_pred CCcccccccccchhcCCcccccCCCCCCccccccCCCcc
Confidence 88843 55666665555433335554444333 444443
Done!