Query 030842
Match_columns 170
No_of_seqs 21 out of 23
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 08:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dl8_C SECE; RECA-type ATPase 98.8 3.4E-10 1.2E-14 77.2 -0.9 58 105-162 4-61 (65)
2 3din_D Preprotein translocase 98.8 2.3E-10 7.9E-15 78.0 -2.4 58 105-162 4-61 (65)
3 2zjs_E Preprotein translocase 98.6 6.3E-10 2.2E-14 74.5 -4.8 52 106-157 6-57 (60)
4 3j01_B Preprotein translocase 98.5 2.5E-08 8.6E-13 75.1 1.1 68 94-161 46-113 (116)
5 3bo0_B Preprotein translocase 97.4 5.4E-06 1.8E-10 55.3 -3.4 49 106-154 7-62 (65)
6 2lu2_A H4, putative, microneme 26.1 15 0.00052 28.8 0.2 40 64-103 15-54 (138)
7 1jb0_X Photosystem I subunit P 24.3 36 0.0012 21.5 1.6 15 140-154 14-28 (35)
8 3r46_A Coiled coil helix L24D; 21.1 46 0.0016 20.8 1.6 18 85-102 3-20 (35)
9 4i0x_B ESAT-6-like protein MAB 15.3 1.5E+02 0.005 19.9 3.3 29 88-116 29-57 (103)
10 3fxd_A Protein ICMQ; helix bun 13.7 1.1E+02 0.0039 20.9 2.3 32 88-119 8-42 (57)
No 1
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=98.80 E-value=3.4e-10 Score=77.18 Aligned_cols=58 Identities=19% Similarity=0.325 Sum_probs=32.2
Q ss_pred hcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHhcC
Q 030842 105 AGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAG 162 (170)
Q Consensus 105 ~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF~g 162 (170)
-.+|++++..|+++|.||+++.+..+|++|+..++..++++..+|.++..+-+.+|+=
T Consensus 4 ~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3dl8_C 4 LKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSL 61 (65)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999998853
No 2
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=98.78 E-value=2.3e-10 Score=78.00 Aligned_cols=58 Identities=26% Similarity=0.503 Sum_probs=50.2
Q ss_pred hcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHhcC
Q 030842 105 AGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAG 162 (170)
Q Consensus 105 ~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF~g 162 (170)
-.+|++++..|+++|.||+++.+..+|++|+..++..++++..+|.++..+-+.+|+=
T Consensus 4 ~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3din_D 4 LRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA 61 (65)
T ss_dssp ------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999999999999999999999998853
No 3
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=98.58 E-value=6.3e-10 Score=74.53 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=42.9
Q ss_pred cCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhH
Q 030842 106 GDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSD 157 (170)
Q Consensus 106 ~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd 157 (170)
.+|++++.+|+++|.||+++.+..+|++|+..++..++++..+|.++..+-+
T Consensus 6 ~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~~~~~vD~~~~~~~~ 57 (60)
T 2zjs_E 6 IRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIG 57 (60)
T ss_dssp ------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999998776543
No 4
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=98.48 E-value=2.5e-08 Score=75.12 Aligned_cols=68 Identities=24% Similarity=0.264 Sum_probs=60.8
Q ss_pred HHHHHHhhhhhhcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHhc
Q 030842 94 KKVLKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFA 161 (170)
Q Consensus 94 k~~~~erk~~e~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF~ 161 (170)
-=++.-.+-++-.+|++++.+|++++.||+++.+..+|++|+..++-.++++..+|.++..+-+.+++
T Consensus 46 ~v~~~t~~g~~~~~F~kev~~ElkKV~WPtr~E~~~~T~vViv~vii~al~l~~vD~~~~~~v~~i~g 113 (116)
T 3j01_B 46 GVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITG 113 (116)
T ss_dssp HHHHHHTTTSCTTTCSSSHHHHHHHHHTTTTTSCHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHTSS
T ss_pred HHHHHccccchHHHHHHHHHHHhheeeCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555567789999999999999999999999999999999999999999999999999998884
No 5
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=97.36 E-value=5.4e-06 Score=55.31 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=42.2
Q ss_pred cCccchHHhhhhhcccCCC----cccc---cccceeEeEEeechhhHHHHHHHHHH
Q 030842 106 GDLLSGVGEEIREIEWPAF----GKVL---GTTGVVLGVIAGSSVVLLTVNFVLAE 154 (170)
Q Consensus 106 ~nf~~GVaEEi~~IEWPt~----~kvL---gTTGVVL~II~GSs~vLLtVNa~LAE 154 (170)
.+|++++.+|++++.||++ .... .+|++|+.++...+.++..++.++..
T Consensus 7 ~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~~i~~ 62 (65)
T 3bo0_B 7 VAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKG 62 (65)
T ss_dssp HHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999 8888 99999999888888888777766543
No 6
>2lu2_A H4, putative, microneme tgmic5 protein; micronemal protein 5, invasion, pathogenesis, cell adhesion; NMR {Toxoplasma gondii}
Probab=26.09 E-value=15 Score=28.79 Aligned_cols=40 Identities=28% Similarity=0.508 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCCChhhhhHHHHHHHHHHHHhhhh
Q 030842 64 KSETVNEPESEPANPATESSAELSELGSEIKKVLKEKKEE 103 (170)
Q Consensus 64 ~~e~~~~p~~~~~~~~e~~~a~~selgaeik~~~~erk~~ 103 (170)
+||+.+..+-+|+-|-.|+.....++-.|||+-..+||..
T Consensus 15 ~se~~~a~~~~~~~~g~ps~~~~~~~~e~~keg~e~~k~~ 54 (138)
T 2lu2_A 15 QSEPMEAADRQAEHPGAPTQSEMKEFQEEIKEGVEETKHE 54 (138)
T ss_dssp ----------------------------------------
T ss_pred ccccchhhhcccccCCCCchhhHHHHHHHHHHHHHHhcCC
Confidence 3566666666777788888888889999999966777743
No 7
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=24.34 E-value=36 Score=21.47 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=12.3
Q ss_pred echhhHHHHHHHHHH
Q 030842 140 GSSVVLLTVNFVLAE 154 (170)
Q Consensus 140 GSs~vLLtVNa~LAE 154 (170)
|=+++||.+|++.|.
T Consensus 14 ~WalllLaINflVAa 28 (35)
T 1jb0_X 14 FWAVLLLAINFLVAA 28 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346789999999885
No 8
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=21.14 E-value=46 Score=20.82 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHhhh
Q 030842 85 ELSELGSEIKKVLKEKKE 102 (170)
Q Consensus 85 ~~selgaeik~~~~erk~ 102 (170)
+.+.|++|+|...+|.|.
T Consensus 3 elkaiaqelkaiakelka 20 (35)
T 3r46_A 3 ELKAIAQELKAIAKELKA 20 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 356788888887776663
No 9
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=15.32 E-value=1.5e+02 Score=19.89 Aligned_cols=29 Identities=3% Similarity=0.066 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhhhhcCccchHHhhh
Q 030842 88 ELGSEIKKVLKEKKEEKAGDLLSGVGEEI 116 (170)
Q Consensus 88 elgaeik~~~~erk~~e~~nf~~GVaEEi 116 (170)
+|-++|.++...-.+-.+.+||.|.+.+.
T Consensus 29 ~i~~~l~~L~~~v~~L~~~g~W~G~A~~a 57 (103)
T 4i0x_B 29 FVTENLDQLESRAQKLVQSGQWAGAAAAA 57 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCeechHHHH
Confidence 44455555444444446788899987764
No 10
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=13.75 E-value=1.1e+02 Score=20.86 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhh---hhcCccchHHhhhhhc
Q 030842 88 ELGSEIKKVLKEKKEE---KAGDLLSGVGEEIREI 119 (170)
Q Consensus 88 elgaeik~~~~erk~~---e~~nf~~GVaEEi~~I 119 (170)
|=+.+|.|++.+.=++ +.+||.+.+-.-+.+|
T Consensus 8 eq~~aILkaLdeaIe~GPWe~SNFLRvIGKnL~eI 42 (57)
T 3fxd_A 8 EQKETILKALNDAIEKGPWDKSNFLRVIGKKLIAI 42 (57)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHhHHHH
Confidence 4466777777666555 8899999876544443
Done!