Query 030842
Match_columns 170
No_of_seqs 21 out of 23
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 08:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030842.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030842hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o38a1 a.35.1.13 (A:28-116) H 14.0 46 0.0033 20.7 2.1 15 87-101 10-24 (89)
2 d2c42a3 c.48.1.3 (A:259-415) P 12.6 36 0.0026 23.7 1.4 32 93-124 117-148 (157)
3 d1sr8a_ e.54.1.1 (A:) Cobalami 12.4 28 0.002 27.6 0.8 49 88-136 138-192 (282)
4 d2a6ca1 a.35.1.13 (A:1-69) HTH 11.5 50 0.0036 19.5 1.6 15 87-101 5-19 (69)
5 d1x2la1 a.35.1.7 (A:9-95) Home 11.3 1.6E+02 0.012 19.4 4.4 36 78-116 6-47 (87)
6 d2caya1 b.55.1.12 (A:1-99,A:25 11.0 45 0.0033 23.0 1.4 15 13-27 85-99 (130)
7 d1dpsa_ a.25.1.1 (A:) Dodecame 10.8 46 0.0033 22.5 1.3 35 87-121 118-152 (159)
8 d1jb0x_ f.23.20.1 (X:) Subunit 10.3 69 0.005 17.9 1.8 15 140-154 8-22 (29)
9 d1b0na2 a.35.1.3 (A:1-68) SinR 9.2 60 0.0043 18.8 1.3 13 89-101 2-14 (68)
10 d2b5aa1 a.35.1.3 (A:1-77) Regu 8.7 93 0.0068 18.1 2.1 15 87-101 9-23 (77)
No 1
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=14.04 E-value=46 Score=20.74 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhh
Q 030842 87 SELGSEIKKVLKEKK 101 (170)
Q Consensus 87 selgaeik~~~~erk 101 (170)
.+||.+|++++++++
T Consensus 10 ~~l~~~i~~~r~~~g 24 (89)
T d2o38a1 10 LRLAYALNAVIDRAR 24 (89)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 489999999988877
No 2
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Probab=12.61 E-value=36 Score=23.74 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhhhcCccchHHhhhhhcccCCC
Q 030842 93 IKKVLKEKKEEKAGDLLSGVGEEIREIEWPAF 124 (170)
Q Consensus 93 ik~~~~erk~~e~~nf~~GVaEEi~~IEWPt~ 124 (170)
++++.++-.+.....||.|+.+.+..-.||.-
T Consensus 117 ~~~i~e~l~~~~k~~f~~gi~d~v~~~~l~~~ 148 (157)
T d2c42a3 117 VKSVYDNMSGAKKNHFTVGIEDDVTGTSLPVD 148 (157)
T ss_dssp HHHHHHHHHTTCCSSEECSSCCTTTCCBCCCC
T ss_pred HHHHHHHhhcccccCceEeeecCccccccCCC
Confidence 33333444445667899999999999999953
No 3
>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.44 E-value=28 Score=27.62 Aligned_cols=49 Identities=22% Similarity=0.155 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhhhhhcCccchHHhhhhhcccC-CC-----cccccccceeEe
Q 030842 88 ELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIEWP-AF-----GKVLGTTGVVLG 136 (170)
Q Consensus 88 elgaeik~~~~erk~~e~~nf~~GVaEEi~~IEWP-t~-----~kvLgTTGVVL~ 136 (170)
-|..+++++..+-...-.-.+..==-||+.+=+|= .. .+.|||||+|-=
T Consensus 138 mI~~~v~~~~~~~~~~~~V~IsVP~Ge~lA~kT~NprLGI~GGISILGTTGIV~P 192 (282)
T d1sr8a_ 138 QILENFIKASREFNFSGGVRISVPDGEEVAKKTGNEKVGIKGGISILGTTGFVEP 192 (282)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTHHHHHHTTCGGGGTCBSEECBCCSSSEECC
T ss_pred HHHHHHHHHHHhcCCCeeEEEEeCcHHHHhhhccccccCcccceEEeeccceEEe
Confidence 45555555544322111111222223566555553 33 378999999965
No 4
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=11.50 E-value=50 Score=19.48 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHhh
Q 030842 87 SELGSEIKKVLKEKK 101 (170)
Q Consensus 87 selgaeik~~~~erk 101 (170)
++|+..|++++++++
T Consensus 5 ~~l~~~i~~~r~~~g 19 (69)
T d2a6ca1 5 SQLLIVLQEHLRNSG 19 (69)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 589999999887776
No 5
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.34 E-value=1.6e+02 Score=19.37 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=23.2
Q ss_pred CCCCChhhhhHHHHHHHHHHHHhh------hhhhcCccchHHhhh
Q 030842 78 PATESSAELSELGSEIKKVLKEKK------EEKAGDLLSGVGEEI 116 (170)
Q Consensus 78 ~~e~~~a~~selgaeik~~~~erk------~~e~~nf~~GVaEEi 116 (170)
..+.|+. ||+..|++.|++.+ .+.--|--+|...|+
T Consensus 6 ~e~ldT~---~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdL 47 (87)
T d1x2la1 6 EEQLDTA---EIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEI 47 (87)
T ss_dssp CCCCCHH---HHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHH
T ss_pred cCCCCHH---HHHHHHHHHHHHcCCCHHHHHHHHHhhChHHHHHH
Confidence 4456644 99999999988876 222344445555554
No 6
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.02 E-value=45 Score=23.03 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=12.1
Q ss_pred ccCCccccccCCCCc
Q 030842 13 PVLPKAYVQSKPPPV 27 (170)
Q Consensus 13 ~~~~~~~~q~k~~~~ 27 (170)
..+||+.+|+|+|.-
T Consensus 85 ~ss~KI~l~l~~~~~ 99 (130)
T d2caya1 85 TRSPRLILFFKDPSS 99 (130)
T ss_dssp SSSCEEEEEESSCSS
T ss_pred CCCCeEEEEeCCCCC
Confidence 567899999998754
No 7
>d1dpsa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Escherichia coli, Dps [TaxId: 562]}
Probab=10.76 E-value=46 Score=22.50 Aligned_cols=35 Identities=17% Similarity=0.588 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhhhhhhcCccchHHhhhhhccc
Q 030842 87 SELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIEW 121 (170)
Q Consensus 87 selgaeik~~~~erk~~e~~nf~~GVaEEi~~IEW 121 (170)
..+..++++++.+.+.....|++.+..++..+--|
T Consensus 118 ~~~i~~~r~~a~~~~D~~T~dll~~~l~~~Ek~~W 152 (159)
T d1dpsa_ 118 AIVANDVRKAIGEAKDDDTADILTAASRDLDKFLW 152 (159)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHH
Confidence 35556667666655555667888888888877666
No 8
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=10.34 E-value=69 Score=17.90 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=11.9
Q ss_pred echhhHHHHHHHHHH
Q 030842 140 GSSVVLLTVNFVLAE 154 (170)
Q Consensus 140 GSs~vLLtVNa~LAE 154 (170)
+-+++||..|++.|.
T Consensus 8 ~wa~lllainflvaa 22 (29)
T d1jb0x_ 8 FWAVLLLAINFLVAA 22 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346789999999875
No 9
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=9.22 E-value=60 Score=18.76 Aligned_cols=13 Identities=46% Similarity=0.623 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhh
Q 030842 89 LGSEIKKVLKEKK 101 (170)
Q Consensus 89 lgaeik~~~~erk 101 (170)
||..||+++++++
T Consensus 2 ig~~ik~~R~~~g 14 (68)
T d1b0na2 2 IGQRIKQYRKEKG 14 (68)
T ss_dssp CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 6888999877776
No 10
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=8.70 E-value=93 Score=18.15 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHhh
Q 030842 87 SELGSEIKKVLKEKK 101 (170)
Q Consensus 87 selgaeik~~~~erk 101 (170)
..+|..||+++++++
T Consensus 9 ~~~g~~ik~~R~~~g 23 (77)
T d2b5aa1 9 RKFGRTLKKIRTQKG 23 (77)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 478999999877776
Done!