Query 030843
Match_columns 170
No_of_seqs 112 out of 1065
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 3.2E-42 7E-47 264.6 22.3 165 1-168 61-227 (227)
2 PRK03996 proteasome subunit al 100.0 4.4E-41 9.6E-46 260.4 22.4 167 1-170 70-239 (241)
3 COG0638 PRE1 20S proteasome, a 100.0 2.6E-40 5.6E-45 254.9 22.0 164 1-169 65-231 (236)
4 PTZ00246 proteasome subunit al 100.0 5.4E-40 1.2E-44 255.9 22.5 167 1-170 66-241 (253)
5 KOG0181 20S proteasome, regula 100.0 6.2E-41 1.3E-45 242.7 15.3 167 1-170 66-233 (233)
6 TIGR03690 20S_bact_beta protea 100.0 1.5E-39 3.3E-44 248.5 20.4 166 1-170 37-214 (219)
7 cd03758 proteasome_beta_type_2 100.0 1.3E-39 2.9E-44 244.5 19.4 153 1-158 36-191 (193)
8 cd03761 proteasome_beta_type_5 100.0 2.3E-39 5E-44 242.3 19.9 152 1-159 35-188 (188)
9 PTZ00488 Proteasome subunit be 100.0 3.7E-39 7.9E-44 249.9 20.5 163 1-170 74-238 (247)
10 TIGR03633 arc_protsome_A prote 100.0 1E-38 2.3E-43 244.7 20.5 158 1-162 63-224 (224)
11 KOG0176 20S proteasome, regula 100.0 4.3E-39 9.3E-44 233.6 16.2 170 1-170 68-241 (241)
12 cd03760 proteasome_beta_type_4 100.0 1.2E-38 2.5E-43 240.1 18.2 154 1-159 37-196 (197)
13 cd03749 proteasome_alpha_type_ 100.0 2.8E-38 6E-43 240.3 19.9 149 1-152 59-211 (211)
14 cd03759 proteasome_beta_type_3 100.0 2.8E-38 6E-43 237.7 18.8 147 1-154 38-187 (195)
15 cd03751 proteasome_alpha_type_ 100.0 6.5E-38 1.4E-42 238.3 20.0 148 1-151 64-212 (212)
16 cd03756 proteasome_alpha_arche 100.0 7.1E-38 1.5E-42 238.1 20.1 149 1-152 62-210 (211)
17 cd03755 proteasome_alpha_type_ 100.0 7.7E-38 1.7E-42 237.3 19.5 146 1-151 61-207 (207)
18 cd03752 proteasome_alpha_type_ 100.0 1.2E-37 2.7E-42 237.1 19.7 148 1-151 64-213 (213)
19 cd03754 proteasome_alpha_type_ 100.0 1.1E-37 2.4E-42 237.6 19.1 148 1-151 63-215 (215)
20 cd03764 proteasome_beta_archea 100.0 2.9E-37 6.3E-42 230.8 20.0 152 1-159 35-188 (188)
21 TIGR03691 20S_bact_alpha prote 100.0 2.6E-37 5.7E-42 236.9 20.0 163 1-167 54-228 (228)
22 TIGR03634 arc_protsome_B prote 100.0 3.9E-37 8.6E-42 229.5 19.4 147 1-154 36-183 (185)
23 KOG0183 20S proteasome, regula 100.0 4.7E-38 1E-42 230.7 14.0 164 2-170 65-233 (249)
24 cd03763 proteasome_beta_type_7 100.0 4.8E-37 1E-41 229.9 19.5 152 1-160 35-188 (189)
25 cd03757 proteasome_beta_type_1 100.0 3.9E-37 8.5E-42 234.2 18.1 147 1-154 43-200 (212)
26 cd03753 proteasome_alpha_type_ 100.0 8.2E-37 1.8E-41 232.6 19.7 151 1-151 61-213 (213)
27 cd03765 proteasome_beta_bacter 100.0 6E-37 1.3E-41 235.4 18.3 156 1-157 34-204 (236)
28 cd01911 proteasome_alpha prote 100.0 1E-36 2.2E-41 231.4 18.6 148 1-151 61-209 (209)
29 cd03762 proteasome_beta_type_6 100.0 1.5E-36 3.3E-41 226.9 19.2 149 1-157 35-186 (188)
30 KOG0178 20S proteasome, regula 100.0 3.3E-36 7.1E-41 220.5 18.0 166 1-169 66-239 (249)
31 cd01912 proteasome_beta protea 100.0 3.4E-35 7.4E-40 219.6 19.4 150 1-157 35-187 (189)
32 KOG0182 20S proteasome, regula 100.0 5E-35 1.1E-39 214.4 17.6 167 1-170 70-242 (246)
33 cd01906 proteasome_protease_Hs 100.0 1.3E-34 2.7E-39 215.1 19.5 146 1-151 35-182 (182)
34 PF00227 Proteasome: Proteasom 100.0 5.3E-35 1.2E-39 218.4 17.1 148 1-151 40-190 (190)
35 KOG0863 20S proteasome, regula 100.0 5.3E-34 1.1E-38 211.4 16.6 165 1-168 64-234 (264)
36 KOG0184 20S proteasome, regula 100.0 2.1E-33 4.6E-38 207.2 14.1 162 1-166 68-234 (254)
37 KOG0177 20S proteasome, regula 100.0 9.3E-33 2E-37 199.3 13.9 155 1-160 36-193 (200)
38 KOG0175 20S proteasome, regula 100.0 5.6E-30 1.2E-34 192.6 14.0 159 2-167 107-267 (285)
39 KOG0179 20S proteasome, regula 100.0 2.2E-29 4.7E-34 184.5 15.0 147 1-154 64-223 (235)
40 KOG0173 20S proteasome, regula 100.0 5.7E-28 1.2E-32 181.4 14.7 145 2-154 73-218 (271)
41 KOG0185 20S proteasome, regula 99.9 1.2E-27 2.7E-32 178.0 10.1 159 1-164 76-241 (256)
42 KOG0174 20S proteasome, regula 99.9 1.2E-26 2.7E-31 168.3 12.7 157 2-166 55-216 (224)
43 KOG0180 20S proteasome, regula 99.9 7.1E-26 1.5E-30 161.6 14.9 147 1-154 43-192 (204)
44 cd01901 Ntn_hydrolase The Ntn 99.9 1.9E-24 4.1E-29 156.2 17.4 128 1-134 35-163 (164)
45 PRK05456 ATP-dependent proteas 99.9 8.4E-24 1.8E-28 155.5 14.1 132 1-151 36-172 (172)
46 cd01913 protease_HslV Protease 99.9 1.3E-22 2.8E-27 148.4 14.9 130 1-150 35-170 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.9 4.7E-22 1E-26 145.5 14.3 131 1-150 35-170 (171)
48 COG3484 Predicted proteasome-t 98.8 9.4E-08 2E-12 70.8 12.0 147 7-154 45-201 (255)
49 COG5405 HslV ATP-dependent pro 98.8 1.1E-07 2.3E-12 68.1 11.6 130 4-152 43-176 (178)
50 PF09894 DUF2121: Uncharacteri 90.8 1.1 2.4E-05 33.5 6.2 49 106-154 131-180 (194)
51 COG4079 Uncharacterized protei 89.3 1.1 2.4E-05 34.8 5.3 62 106-167 132-197 (293)
52 KOG3361 Iron binding protein i 88.7 0.7 1.5E-05 32.4 3.6 44 85-128 71-114 (157)
53 PRK08868 flagellar protein Fla 81.0 6.4 0.00014 28.1 5.6 49 122-170 73-130 (144)
54 PRK07738 flagellar protein Fla 78.2 8.8 0.00019 26.5 5.5 49 122-170 48-105 (117)
55 PRK08452 flagellar protein Fla 75.1 14 0.00031 25.7 5.9 49 122-170 55-112 (124)
56 PF03646 FlaG: FlaG protein; 69.4 7.7 0.00017 25.9 3.5 28 143-170 65-96 (107)
57 PF07499 RuvA_C: RuvA, C-termi 58.8 5 0.00011 22.7 0.8 32 100-131 12-44 (47)
58 PF04539 Sigma70_r3: Sigma-70 55.0 32 0.00069 21.1 4.2 32 22-53 3-34 (78)
59 PF11211 DUF2997: Protein of u 53.3 15 0.00033 21.0 2.3 32 85-116 3-34 (48)
60 COG3193 GlcG Uncharacterized p 51.3 62 0.0014 23.1 5.5 41 117-160 5-50 (141)
61 PF06057 VirJ: Bacterial virul 50.3 20 0.00043 27.0 3.0 34 38-78 43-76 (192)
62 COG4537 ComGC Competence prote 48.7 42 0.00091 22.5 4.0 29 18-46 49-78 (107)
63 KOG3652 Uncharacterized conser 48.5 41 0.00088 30.4 5.0 96 35-137 210-305 (1215)
64 PRK09732 hypothetical protein; 47.4 77 0.0017 22.3 5.6 40 118-160 5-49 (134)
65 COG1334 FlaG Uncharacterized f 47.1 23 0.0005 24.5 2.8 28 143-170 77-108 (120)
66 PRK14065 exodeoxyribonuclease 46.6 52 0.0011 21.3 4.1 32 106-137 32-63 (86)
67 cd06404 PB1_aPKC PB1 domain is 45.4 82 0.0018 20.3 5.6 47 117-168 17-66 (83)
68 PF08289 Flu_M1_C: Influenza M 43.5 74 0.0016 20.5 4.4 47 14-60 41-87 (95)
69 PF03928 DUF336: Domain of unk 42.1 52 0.0011 22.7 4.1 34 118-154 1-34 (132)
70 PF11773 PulG: Type II secreto 40.2 39 0.00085 21.7 2.8 35 119-154 33-67 (82)
71 PF10632 He_PIG_assoc: He_PIG 38.6 39 0.00084 17.2 2.1 22 71-92 5-26 (29)
72 PF02609 Exonuc_VII_S: Exonucl 36.0 86 0.0019 18.0 3.7 29 109-137 9-37 (53)
73 PF05593 RHS_repeat: RHS Repea 35.0 35 0.00076 18.1 1.8 22 81-102 5-26 (38)
74 KOG0098 GTPase Rab2, small G p 34.6 2.1E+02 0.0045 21.8 6.5 94 70-169 34-140 (216)
75 PRK02260 S-ribosylhomocysteina 34.3 1.6E+02 0.0036 21.4 5.6 58 82-139 72-150 (158)
76 cd03081 TRX_Fd_NuoE_FDH_gamma 32.0 49 0.0011 20.8 2.4 20 151-170 60-80 (80)
77 COG3140 Uncharacterized protei 31.4 98 0.0021 18.3 3.3 35 106-140 14-48 (60)
78 PF05801 DUF840: Lagovirus pro 31.3 90 0.0019 20.5 3.4 73 4-91 2-76 (114)
79 TIGR02261 benz_CoA_red_D benzo 30.5 46 0.001 26.3 2.4 46 82-132 109-158 (262)
80 PF14804 Jag_N: Jag N-terminus 29.8 96 0.0021 18.0 3.2 28 121-154 6-33 (52)
81 KOG2201 Pantothenate kinase Pa 28.6 1.6E+02 0.0035 24.3 5.2 57 73-133 177-233 (371)
82 COG1754 Uncharacterized C-term 28.1 55 0.0012 26.2 2.5 38 100-137 102-141 (298)
83 PF14593 PH_3: PH domain; PDB: 26.7 53 0.0011 22.1 1.9 16 80-95 36-51 (104)
84 smart00759 Flu_M1_C Influenza 26.6 1.9E+02 0.004 18.8 4.7 49 12-60 39-87 (95)
85 COG0822 IscU NifU homolog invo 26.0 1.8E+02 0.0038 20.9 4.6 51 86-137 48-98 (150)
86 PF01713 Smr: Smr domain; Int 25.4 1.4E+02 0.0031 18.5 3.7 21 119-139 5-25 (83)
87 PHA03324 nuclear egress membra 25.3 96 0.0021 23.9 3.2 64 36-103 49-116 (274)
88 PF05113 DUF693: Protein of un 25.1 2E+02 0.0044 23.0 5.1 58 70-129 97-157 (314)
89 TIGR03192 benz_CoA_bzdQ benzoy 24.5 80 0.0017 25.4 2.9 48 74-129 132-183 (293)
90 cd06402 PB1_p62 The PB1 domain 24.2 2.1E+02 0.0046 18.6 5.3 45 120-169 27-74 (87)
91 COG4728 Uncharacterized protei 24.0 62 0.0013 21.8 1.8 29 1-29 11-39 (124)
92 PF00178 Ets: Ets-domain; Int 24.0 1.3E+02 0.0029 19.3 3.4 19 148-166 21-42 (85)
93 smart00413 ETS erythroblast tr 23.6 1.1E+02 0.0025 19.8 2.9 22 145-166 18-42 (87)
94 PF03681 UPF0150: Uncharacteri 23.2 1E+02 0.0022 17.0 2.4 17 121-137 30-46 (48)
95 PRK11325 scaffold protein; Pro 23.2 1.7E+02 0.0038 20.1 4.1 50 86-135 46-95 (127)
96 PF01592 NifU_N: NifU-like N t 23.1 1.8E+02 0.0038 19.9 4.1 54 85-138 42-96 (126)
97 COG4990 Uncharacterized protei 23.1 1.7E+02 0.0037 21.9 4.1 43 38-92 116-169 (195)
98 PRK14606 ruvA Holliday junctio 22.7 1.1E+02 0.0023 22.9 3.1 35 99-133 151-185 (188)
99 PF00770 Peptidase_C5: Adenovi 22.7 1.2E+02 0.0026 22.5 3.2 25 69-93 33-57 (183)
100 TIGR03544 DivI1A_domain DivIVA 22.5 60 0.0013 16.8 1.3 16 155-170 15-30 (34)
101 PF09702 Cas_Csa5: CRISPR-asso 22.4 2.5E+02 0.0055 18.9 5.1 59 110-169 9-84 (105)
102 COG1647 Esterase/lipase [Gener 21.9 69 0.0015 24.9 1.9 19 10-28 23-41 (243)
103 cd01262 PH_PDK1 3-Phosphoinosi 21.1 72 0.0016 20.9 1.6 14 80-93 24-37 (89)
104 PF04056 Ssl1: Ssl1-like; Int 21.0 3.7E+02 0.008 20.2 5.9 61 104-168 60-124 (193)
105 TIGR01764 excise DNA binding d 20.8 1.5E+02 0.0033 15.6 2.9 15 155-169 35-49 (49)
106 TIGR02259 benz_CoA_red_A benzo 20.7 86 0.0019 26.6 2.4 45 82-131 279-327 (432)
107 TIGR03342 dsrC_tusE_dsvC sulfu 20.3 2.9E+02 0.0062 18.7 5.0 36 14-53 38-73 (108)
108 PF07277 SapC: SapC; InterPro 20.2 4E+02 0.0087 20.3 7.2 67 98-168 120-201 (221)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-42 Score=264.59 Aligned_cols=165 Identities=38% Similarity=0.629 Sum_probs=160.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|+++|..+|++.+.+.++.+++.|+.+++++++++.+++++++.+|.|++++ +.|||+|++||+|||.+
T Consensus 61 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~rP~~v~~li~G~D~~ 137 (227)
T cd03750 61 EQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSG---GVRPFGVSLLIAGWDEG 137 (227)
T ss_pred EEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC---CCCChheEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999998 88999999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC--eEEc
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLY 158 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~--~~~~ 158 (170)
||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+|++++++++|++++++ ++.+
T Consensus 138 g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~ 217 (227)
T cd03750 138 GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLL 217 (227)
T ss_pred CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999996 9999
Q ss_pred CHHHHHHHHH
Q 030843 159 TPSEVEAVIN 168 (170)
Q Consensus 159 ~~~ei~~~~~ 168 (170)
+++||++++.
T Consensus 218 ~~~ei~~~~~ 227 (227)
T cd03750 218 TPAEIKDYLA 227 (227)
T ss_pred CHHHHHHHhC
Confidence 9999999873
No 2
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.4e-41 Score=260.39 Aligned_cols=167 Identities=43% Similarity=0.760 Sum_probs=161.9
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|++||..+|++.++++++.++..|+.+++++++++.+++++++.+|.|++++ +.|||+|++||||||.+
T Consensus 70 ~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~---~~rP~~~~~ilaG~d~~ 146 (241)
T PRK03996 70 FKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHG---GVRPFGVALLIAGVDDG 146 (241)
T ss_pred EEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC---CccchheEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999998 89999999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC---eEE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHL 157 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~---~~~ 157 (170)
||+||.+||+|++.+++++|+|+|+..++++||+.|+++|+++||++++++||..+.+++.++++++|++++++ ++.
T Consensus 147 gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~ 226 (241)
T PRK03996 147 GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRK 226 (241)
T ss_pred cCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999987678999999999997 999
Q ss_pred cCHHHHHHHHHhC
Q 030843 158 YTPSEVEAVINRL 170 (170)
Q Consensus 158 ~~~~ei~~~~~~~ 170 (170)
++++||++++++|
T Consensus 227 ~~~~ei~~~~~~~ 239 (241)
T PRK03996 227 LSVEEIEKYLEKL 239 (241)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 3
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-40 Score=254.93 Aligned_cols=164 Identities=39% Similarity=0.699 Sum_probs=157.5
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+|||+|++||+.+|++.++++++.+++.|+..++++|+++.+++++++++|.|+++ .|||+|+++|||+|++
T Consensus 65 ~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~-----~rP~gv~~iiaG~d~~ 139 (236)
T COG0638 65 FKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS-----GRPYGVSLLVAGVDDG 139 (236)
T ss_pred EEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-----cccceEEEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999999874 5899999999999997
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC--eEE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHL 157 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~--~~~ 157 (170)
+|+||++||+|++.+++++|+|+|++.++++||+.|+++|+.|||++++++||..+.+||. ++++++|++++++ ++.
T Consensus 140 ~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~ 219 (236)
T COG0638 140 GPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRK 219 (236)
T ss_pred CCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEE
Confidence 7999999999999999999999999999999999999999999999999999999999998 8999999999995 999
Q ss_pred cCHHHHHHHHHh
Q 030843 158 YTPSEVEAVINR 169 (170)
Q Consensus 158 ~~~~ei~~~~~~ 169 (170)
++++++..++..
T Consensus 220 ~~~~~~~~~~~~ 231 (236)
T COG0638 220 LDGEEIKKLLDD 231 (236)
T ss_pred cCHHHHHHHHHH
Confidence 999999988764
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.4e-40 Score=255.93 Aligned_cols=167 Identities=35% Similarity=0.620 Sum_probs=160.6
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|+++++|+++|..+|++.+.+.++.++..|+..++++++++.+++.++..+|.|++++ +.|||+|++||+|||+
T Consensus 66 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~---~~rP~~v~~li~G~D~~ 142 (253)
T PTZ00246 66 YKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFG---GLRPFGVSFLFAGYDEN 142 (253)
T ss_pred EEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc---CcccCCEEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999998 8999999999999995
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC----
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT---- 154 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~---- 154 (170)
+||+||.+||+|++.+++++|+|+|+..+.++||+.|+++||++||++++++||..+.++|. ++++++|++|+++
T Consensus 143 ~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~ 222 (253)
T PTZ00246 143 LGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDG 222 (253)
T ss_pred CCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCC
Confidence 68999999999999999999999999999999999999999999999999999999999986 8999999999973
Q ss_pred ---eEEcCHHHHHHHHHhC
Q 030843 155 ---YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 ---~~~~~~~ei~~~~~~~ 170 (170)
|++++++||+++|++|
T Consensus 223 ~~~~~~l~~~ei~~~l~~~ 241 (253)
T PTZ00246 223 EPIQKMLSEKEIAELLKKV 241 (253)
T ss_pred CCCeEECCHHHHHHHHHHH
Confidence 8999999999999874
No 5
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-41 Score=242.70 Aligned_cols=167 Identities=37% Similarity=0.614 Sum_probs=163.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
++|.++|+|..||+.+|++.+++..++.+++|+..|+++||+..|...++..+|+|||.. +.||||++++|||||.+
T Consensus 66 ~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsg---GvrPFGvslliaG~~~~ 142 (233)
T KOG0181|consen 66 EKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSG---GVRPFGVSLLIAGWDEG 142 (233)
T ss_pred hhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---CccccceEEEEeecCCC
Confidence 478999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC-eEEcC
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYT 159 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~-~~~~~ 159 (170)
+|.||++||+|++..|+++|+|.+...++++||++|.++|.+++++..++..|++..+..++.+++||+++..+ |++++
T Consensus 143 ~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~F~~lt 222 (233)
T KOG0181|consen 143 GPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENGFRRLT 222 (233)
T ss_pred ceeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999988 99999
Q ss_pred HHHHHHHHHhC
Q 030843 160 PSEVEAVINRL 170 (170)
Q Consensus 160 ~~ei~~~~~~~ 170 (170)
++||+++|.++
T Consensus 223 ~~eI~d~l~~l 233 (233)
T KOG0181|consen 223 PAEIEDYLASL 233 (233)
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 6
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.5e-39 Score=248.47 Aligned_cols=166 Identities=22% Similarity=0.257 Sum_probs=154.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|+++|..+|++.+.++++.+++.|+++++++|+++.++++|++++|.++. . .+|||+|++||||||.
T Consensus 37 ~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~-~---~~rp~~v~~iiaG~D~~ 112 (219)
T TIGR03690 37 YPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLP-A---AMQGLAVVPLLAGYDLD 112 (219)
T ss_pred EEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhh-h---ccCCceEEEEEEEECCC
Confidence 6899999999999999999999999999999999999999999999999999988774 3 6799999999999996
Q ss_pred -CCCeEEEECCCCc-eecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCC--c-----eEEE
Q 030843 80 -NGPSLYYTDPSGT-FWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPN--N-----VDIA 149 (170)
Q Consensus 80 -~g~~L~~id~~G~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~--~-----~~i~ 149 (170)
.+|+||++||+|+ +.+++++|+|+|++.++++||+.|+++||.+||++++.+||..+.+||. +++ . ++|+
T Consensus 113 ~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ 192 (219)
T TIGR03690 113 AGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVV 192 (219)
T ss_pred CCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEE
Confidence 4699999999994 7777999999999999999999999999999999999999999999996 544 3 3999
Q ss_pred EEeCC-eEEcCHHHHHHHHHhC
Q 030843 150 RVAPT-YHLYTPSEVEAVINRL 170 (170)
Q Consensus 150 ii~~~-~~~~~~~ei~~~~~~~ 170 (170)
+++++ +++++++||++++++|
T Consensus 193 ii~~~g~~~l~~~ei~~~~~~~ 214 (219)
T TIGR03690 193 VITADGARRVPESELEELARAI 214 (219)
T ss_pred EEccCceEEcCHHHHHHHHHHH
Confidence 99988 9999999999999864
No 7
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-39 Score=244.46 Aligned_cols=153 Identities=24% Similarity=0.283 Sum_probs=146.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|+++++|++||..+|++.+.++++.++..|+.+++++++++.+++++++++|.|+++ + |||+|++||+|||+
T Consensus 36 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~----~-rP~~~~~li~G~d~~ 110 (193)
T cd03758 36 YKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRS----R-TPYQVNLLLAGYDKV 110 (193)
T ss_pred EEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc----C-CCeEEEEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999888754 3 89999999999996
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEE
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 157 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~ 157 (170)
.||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++.+|+..+.+||. ++++++|++|+++ +++
T Consensus 111 ~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~ 190 (193)
T cd03758 111 EGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRD 190 (193)
T ss_pred CCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEe
Confidence 68999999999999999999999999999999999999999999999999999999999996 8999999999999 766
Q ss_pred c
Q 030843 158 Y 158 (170)
Q Consensus 158 ~ 158 (170)
+
T Consensus 191 ~ 191 (193)
T cd03758 191 L 191 (193)
T ss_pred C
Confidence 4
No 8
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-39 Score=242.27 Aligned_cols=152 Identities=24% Similarity=0.356 Sum_probs=145.6
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|+++|..+|++.++++++.+++.|+.+++++|+++.+++++++++|.|++ .||+|++||||||.+
T Consensus 35 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~-------~~~~v~~li~G~D~~ 107 (188)
T cd03761 35 IEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKG-------MGLSMGTMICGWDKT 107 (188)
T ss_pred EEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCC-------CCeEEEEEEEEEeCC
Confidence 6899999999999999999999999999999999999999999999999999977753 489999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEEc
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 158 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~~ 158 (170)
||+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||++++.+||..+.+||. ++++++|++|+++ ++++
T Consensus 108 g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 108 GPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred CCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 9999999999999999999999999999999999999999999999999999999999996 8999999999999 8765
Q ss_pred C
Q 030843 159 T 159 (170)
Q Consensus 159 ~ 159 (170)
+
T Consensus 188 ~ 188 (188)
T cd03761 188 S 188 (188)
T ss_pred C
Confidence 3
No 9
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=3.7e-39 Score=249.86 Aligned_cols=163 Identities=19% Similarity=0.311 Sum_probs=153.8
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|+++|+.+|++.+.++++.+++.|+.+++++|+++.++++|+++++.+ |. .|+.+++|+||||.+
T Consensus 74 ~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~--R~-----~~~~v~~iiaG~D~~ 146 (247)
T PTZ00488 74 IEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNY--KG-----MGLSMGTMICGWDKK 146 (247)
T ss_pred EEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc--CC-----CCeeEEEEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999999999544 22 356666899999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEEc
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 158 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~~ 158 (170)
||+||++||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+.+||. ++++++|++|+++ ++.+
T Consensus 147 gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l 226 (247)
T PTZ00488 147 GPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKI 226 (247)
T ss_pred CCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEEC
Confidence 9999999999999999999999999999999999999999999999999999999999996 8999999999999 9999
Q ss_pred CHHHHHHHHHhC
Q 030843 159 TPSEVEAVINRL 170 (170)
Q Consensus 159 ~~~ei~~~~~~~ 170 (170)
+++||+++++++
T Consensus 227 ~~~ei~~~l~~~ 238 (247)
T PTZ00488 227 SADDCFDLHQKY 238 (247)
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 10
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1e-38 Score=244.69 Aligned_cols=158 Identities=44% Similarity=0.788 Sum_probs=152.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|++||..+|++.+.+.++.++..|+.+++++++++.+++++++.+|.|++++ +.|||+|++||||+|..
T Consensus 63 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~---~~rP~~v~~ll~G~d~~ 139 (224)
T TIGR03633 63 FKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHG---GVRPFGVALLIAGVDDG 139 (224)
T ss_pred EEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC---CccccceEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999988 88999999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhccc-CCCCceEEEEEeCC---eE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEK-VTPNNVDIARVAPT---YH 156 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d-~~~~~~~i~ii~~~---~~ 156 (170)
||+||.+||.|++.+++++|+|+|+..++++|++.|+++|+.+||++++++||..+.+ | .++++++|++|+++ |+
T Consensus 140 ~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~ 218 (224)
T TIGR03633 140 GPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFR 218 (224)
T ss_pred cCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEE
Confidence 9999999999999999999999999999999999999999999999999999999998 6 48999999999997 99
Q ss_pred EcCHHH
Q 030843 157 LYTPSE 162 (170)
Q Consensus 157 ~~~~~e 162 (170)
+++++|
T Consensus 219 ~~~~~~ 224 (224)
T TIGR03633 219 KLSVEE 224 (224)
T ss_pred ECCCCC
Confidence 998875
No 11
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-39 Score=233.65 Aligned_cols=170 Identities=75% Similarity=1.142 Sum_probs=160.6
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCC--CCCccceEEEEEEEEe
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSD 78 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~--~~~rP~~v~~iiaG~d 78 (170)
++|++||+|++||+.+|++.+++.+|.+++++++.|+++|+++.+++.+++...+|-..... ...|||||++++||+|
T Consensus 68 ~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D 147 (241)
T KOG0176|consen 68 VEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHD 147 (241)
T ss_pred eehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeecc
Confidence 57999999999999999999999999999999999999999999999999999888765211 1569999999999999
Q ss_pred CCCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC--eE
Q 030843 79 ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YH 156 (170)
Q Consensus 79 ~~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~--~~ 156 (170)
.+||+||..||+|+++.+++-|+|+|++-+.+.|++.|+++|+++||+.++.+.|+.+.+..++.+|+++.+++++ |+
T Consensus 148 ~~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~ 227 (241)
T KOG0176|consen 148 ETGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFH 227 (241)
T ss_pred CCCceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceE
Confidence 9999999999999999999999999999999999999999999999999999999999998889999999999998 99
Q ss_pred EcCHHHHHHHHHhC
Q 030843 157 LYTPSEVEAVINRL 170 (170)
Q Consensus 157 ~~~~~ei~~~~~~~ 170 (170)
++++||++.++.++
T Consensus 228 ~~t~EE~~~~i~~~ 241 (241)
T KOG0176|consen 228 IYTPEEVEQVIKRL 241 (241)
T ss_pred ecCHHHHHHHHhcC
Confidence 99999999998764
No 12
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-38 Score=240.08 Aligned_cols=154 Identities=22% Similarity=0.247 Sum_probs=145.5
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQ-NHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
|+|++|++|+++|..+|++.++++++.++. .|+.+++.+++++.+++++++.+ |++++ +.|||+|++|+||||+
T Consensus 37 ~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~--y~~~~---~~rP~~v~~iiaG~D~ 111 (197)
T cd03760 37 FKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVL--YNRRS---KMNPLWNTLVVGGVDN 111 (197)
T ss_pred EEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HHHhh---cCCCceEEEEEEEEcC
Confidence 689999999999999999999999999987 56678999999999999999997 88887 7899999999999997
Q ss_pred -CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC--CCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-
Q 030843 80 -NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT- 154 (170)
Q Consensus 80 -~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~- 154 (170)
.||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||++||++++++||+.+.+||. ++++++|++|+++
T Consensus 112 ~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 191 (197)
T cd03760 112 EGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEG 191 (197)
T ss_pred CCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCC
Confidence 689999999999999999999999999999999999999 99999999999999999999996 8999999999999
Q ss_pred eEEcC
Q 030843 155 YHLYT 159 (170)
Q Consensus 155 ~~~~~ 159 (170)
+++-.
T Consensus 192 ~~~~~ 196 (197)
T cd03760 192 VEIEG 196 (197)
T ss_pred EEeCC
Confidence 76644
No 13
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-38 Score=240.32 Aligned_cols=149 Identities=38% Similarity=0.604 Sum_probs=144.0
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|++||+.+|++.+.++++.++..|+.+++++++++.+++++++.+|.|+++. +.|||+|++||+|||..
T Consensus 59 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~---~~rP~~v~~ii~G~D~~ 135 (211)
T cd03749 59 FKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRY---GRRPYGVGLLIAGYDES 135 (211)
T ss_pred EEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CCCCceEEEEEEEEcCC
Confidence 689999999999999999999999999999999999999999999999999999999988 88999999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhcc--CCCCHHHHHHHHHHHHHHhhccc--CCCCceEEEEEe
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN--KDLTLQEAETIALSILKQVMEEK--VTPNNVDIARVA 152 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ea~~l~~~~l~~~~~~d--~~~~~~~i~ii~ 152 (170)
||+||++||+|++.+++++|+|+|++.+.++||+.|+ ++||++||+++++++|+.+.++| .+++++||++++
T Consensus 136 gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 136 GPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999999999999999999999999999998 59999999999999999999976 789999999984
No 14
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-38 Score=237.67 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=140.7
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++.+|+++.+++++++.+ |+++. +||+|++||||||++
T Consensus 38 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~l--y~~r~-----~P~~v~~ii~G~D~~ 110 (195)
T cd03759 38 FRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLL--YEKRF-----GPYFVEPVVAGLDPD 110 (195)
T ss_pred EEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HHhcC-----CCceEEEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999998 77654 899999999999965
Q ss_pred -CCeEEEECCCCceeccc-EEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC
Q 030843 81 -GPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 154 (170)
Q Consensus 81 -g~~L~~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~ 154 (170)
||+||.+||+|++.+++ ++|+|+|++.+.++||+.|+++||.+||++++++||..+.+||. ++++++|++|+++
T Consensus 111 ~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~ 187 (195)
T cd03759 111 GKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKD 187 (195)
T ss_pred CCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCC
Confidence 59999999999998887 99999999999999999999999999999999999999999996 8999999999998
No 15
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.5e-38 Score=238.34 Aligned_cols=148 Identities=34% Similarity=0.539 Sum_probs=143.0
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||+.+|++.++++++.+++.|+.+++++++++.++++|++++|.|+++. +.|||+|++||+|||.+
T Consensus 64 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~---~~rP~~vs~li~G~D~~ 140 (212)
T cd03751 64 FNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYS---SVRPFGCSVLLGGYDSD 140 (212)
T ss_pred eEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCC---CcCCceEEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999998 89999999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhccc-CCCCceEEEEE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEK-VTPNNVDIARV 151 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d-~~~~~~~i~ii 151 (170)
||+||.+||+|++.+++++|+|+|+..++++||+.|+++||++||+++++++|..+.+.+ .+..++||.++
T Consensus 141 gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 141 GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred cCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999965 58899999874
No 16
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.1e-38 Score=238.08 Aligned_cols=149 Identities=48% Similarity=0.830 Sum_probs=145.6
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|++||+.+|++.+.+.++.+++.|+.+++++++++.+++++++.++.|++++ +.|||+|++||+|||+.
T Consensus 62 ~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~---~~rP~~v~~ll~G~D~~ 138 (211)
T cd03756 62 YKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHG---GVRPFGVALLIAGVDDG 138 (211)
T ss_pred EEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC---CeechhEEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999988 89999999999999998
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEe
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 152 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~ 152 (170)
||+||.+||+|++.+++++|+|+|++.++++||+.|+++|+++||++++++||..+.+++.++++++|++|+
T Consensus 139 ~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 139 GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred CCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999988899999999997
No 17
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.7e-38 Score=237.26 Aligned_cols=146 Identities=37% Similarity=0.629 Sum_probs=141.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||+.+|++.+.++++.+++.|+.+++++|+++.+++++++++|.|++++ +.|||+|++||+|||++
T Consensus 61 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~---~~rP~~vs~ii~G~D~~ 137 (207)
T cd03755 61 CMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSG---GVRPFGISTLIVGFDPD 137 (207)
T ss_pred EEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccc---CcccceeEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999998 89999999999999974
Q ss_pred -CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEE
Q 030843 81 -GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 151 (170)
Q Consensus 81 -g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii 151 (170)
||+||.+||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+.+ .+++++||+++
T Consensus 138 ~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 138 GTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred CCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 8999999999999999999999999999999999999999999999999999999997 68999999875
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-37 Score=237.09 Aligned_cols=148 Identities=39% Similarity=0.673 Sum_probs=143.2
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|++||+.+|++.+.++++.++..|+.+++++|+++.+++.++..+|.|++.+ +.|||+|++|++|||.
T Consensus 64 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~---~~RP~~v~~li~G~D~~ 140 (213)
T cd03752 64 YKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYG---GLRPFGVSFLYAGWDKH 140 (213)
T ss_pred EEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCC---CcccceeEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999988 8899999999999996
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEE
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARV 151 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii 151 (170)
.||+||.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||..+.+|+. ++++++|+++
T Consensus 141 ~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 141 YGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred CCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999985 8999999875
No 19
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-37 Score=237.58 Aligned_cols=148 Identities=32% Similarity=0.616 Sum_probs=143.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|+++++|++||+.+|++.+.++++.++..|+++++++|+++.+++++++++|.|++++ +.|||+|++|+||||+
T Consensus 63 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~---~~RP~~v~~ii~G~D~~ 139 (215)
T cd03754 63 FRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHA---YMRPLGVSMILIGIDEE 139 (215)
T ss_pred EEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCC---CCcCCeeEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999998 8899999999999996
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCC--C--CHHHHHHHHHHHHHHhhcccCCCCceEEEEE
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKD--L--TLQEAETIALSILKQVMEEKVTPNNVDIARV 151 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~--s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii 151 (170)
+||+||++||+|++.+++++|+|+|++.++++||+.|+++ | |++||++++++||..+.+||++++++||+++
T Consensus 140 ~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 140 LGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred CCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 6899999999999999999999999999999999999984 7 9999999999999999999999999999875
No 20
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-37 Score=230.84 Aligned_cols=152 Identities=30% Similarity=0.525 Sum_probs=145.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++++++|..+|++.+.+.++.+++.|+..++++++++.+++++++.++.+ +.|||+|++|+||||.+
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-------~~~P~~~~~lvaG~d~~ 107 (188)
T cd03764 35 FQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSS-------KYFPYIVQLLIGGVDEE 107 (188)
T ss_pred EEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-------CCCCcEEEEEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999999999554 34899999999999987
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEEc
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 158 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~~ 158 (170)
||+||.+||+|++.+++++|+|+|+++++++||+.|+++|+.+||++++++||+.+.+||. ++++++|++++++ ++++
T Consensus 108 ~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 108 GPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred CCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 8999999999999999999999999999999999999999999999999999999999996 8999999999999 8876
Q ss_pred C
Q 030843 159 T 159 (170)
Q Consensus 159 ~ 159 (170)
.
T Consensus 188 ~ 188 (188)
T cd03764 188 E 188 (188)
T ss_pred C
Confidence 3
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.6e-37 Score=236.94 Aligned_cols=163 Identities=19% Similarity=0.289 Sum_probs=149.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYG-EPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
|+|+|||+|+++|+.+|++.+++.++.++..|++.++ .+++++.+++.+++.+..++ ++ +.|||+|++|++|||.
T Consensus 54 ~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~---~~RP~gvs~Li~G~d~ 129 (228)
T TIGR03691 54 SELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TE---QQKPYEVEICVAEVGE 129 (228)
T ss_pred EEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhccccc-cc---ccCcceEEEEEEEEcC
Confidence 6899999999999999999999999999999999998 68999999988888776665 44 6799999999999984
Q ss_pred --CCCeEEEECCCCceeccc-EEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhh--ccc-CCCCceEEEEEeC
Q 030843 80 --NGPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVM--EEK-VTPNNVDIARVAP 153 (170)
Q Consensus 80 --~g~~L~~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~--~~d-~~~~~~~i~ii~~ 153 (170)
+||+||++||+|++.+++ ++|+|+|++.+.++||+.|+++||++||++++++||..+. +++ +++.++||+++++
T Consensus 130 ~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k 209 (228)
T TIGR03691 130 TPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDR 209 (228)
T ss_pred CCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeC
Confidence 689999999999999976 8999999999999999999999999999999999999995 454 5899999999996
Q ss_pred C-----eEEcCHHHHHHHH
Q 030843 154 T-----YHLYTPSEVEAVI 167 (170)
Q Consensus 154 ~-----~~~~~~~ei~~~~ 167 (170)
+ |++|+++||+++|
T Consensus 210 ~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 210 SRPRRAFRRITGEALERLL 228 (228)
T ss_pred CCCccceEECCHHHHHhhC
Confidence 2 9999999999875
No 22
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.9e-37 Score=229.55 Aligned_cols=147 Identities=32% Similarity=0.543 Sum_probs=141.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++++++|..+|++.+.++++.+++.|+..++++++++.+++++++.+|.+ +.|||+|++|+||||.+
T Consensus 36 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~-------~~rP~~v~~ivaG~d~~ 108 (185)
T TIGR03634 36 FQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSN-------RFFPFIVQLLVGGVDEE 108 (185)
T ss_pred EEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-------CCCCeEEEEEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999999999655 34999999999999998
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 154 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~ 154 (170)
||+||.+||+|++.+++++++|+|+..++++||+.|+++||++||++++++||+.+.+||. ++++++|++|+++
T Consensus 109 g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~ 183 (185)
T TIGR03634 109 GPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKD 183 (185)
T ss_pred CCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999996 8999999999986
No 23
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-38 Score=230.70 Aligned_cols=164 Identities=35% Similarity=0.616 Sum_probs=157.0
Q ss_pred eecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCCC
Q 030843 2 EIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG 81 (170)
Q Consensus 2 ~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~g 81 (170)
.+++|++|+++|+.+|++.+++.+|.+|+.|+++.+.++++++++++++.+.|.|||.. +.||||++.+|+|||+.|
T Consensus 65 ~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~---grRPFGvs~Li~GfD~~g 141 (249)
T KOG0183|consen 65 MLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSN---GRRPFGVSTLIGGFDPDG 141 (249)
T ss_pred eecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccC---CcccccceEEEEeeCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred -CeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCC--CCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC--eE
Q 030843 82 -PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKD--LTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YH 156 (170)
Q Consensus 82 -~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~--~~ 156 (170)
|+||.+||+|.+.+|++.|+|.+++.+..+|||.|.++ .+..+++++++++|..+... .+.++|+++++++ ++
T Consensus 142 ~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs--~~~nie~aVm~~~~~~~ 219 (249)
T KOG0183|consen 142 TPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS--GGKNIEVAVMKRRKDLK 219 (249)
T ss_pred CeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc--CCCeeEEEEEecCCcee
Confidence 99999999999999999999999999999999999875 78899999999999999876 7899999999998 99
Q ss_pred EcCHHHHHHHHHhC
Q 030843 157 LYTPSEVEAVINRL 170 (170)
Q Consensus 157 ~~~~~ei~~~~~~~ 170 (170)
+++.++|+.++..|
T Consensus 220 ~l~~~~I~~~v~~i 233 (249)
T KOG0183|consen 220 MLESEEIDDIVKEI 233 (249)
T ss_pred ecCHHHHHHHHHHH
Confidence 99999999998753
No 24
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-37 Score=229.89 Aligned_cols=152 Identities=24% Similarity=0.367 Sum_probs=144.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|+++|..+|++.+.+.++.+++.|+.+++++++++.+++++++.++.|+ .||+|++|+||||.+
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~--------~p~~v~~ivaG~d~~ 106 (189)
T cd03763 35 HYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQ--------GHIGAALVLGGVDYT 106 (189)
T ss_pred EEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC--------CccceeEEEEeEcCC
Confidence 689999999999999999999999999999999999999999999999999996542 499999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEEc
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 158 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~~ 158 (170)
||+||.+||.|++.+++++|+|+|+..++++||+.|+++||++||++++++||+.+.+||+ ++++++|++|+++ ++..
T Consensus 107 g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~ 186 (189)
T cd03763 107 GPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYL 186 (189)
T ss_pred CCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999997 8999999999999 7765
Q ss_pred CH
Q 030843 159 TP 160 (170)
Q Consensus 159 ~~ 160 (170)
.|
T Consensus 187 ~~ 188 (189)
T cd03763 187 RN 188 (189)
T ss_pred cC
Confidence 43
No 25
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-37 Score=234.15 Aligned_cols=147 Identities=22% Similarity=0.323 Sum_probs=140.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|++||..+|++.+.+.++.+++.|+.+++++++++.+++++++++ |+++. |||+|++||||||.+
T Consensus 43 ~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~l--y~~R~-----~P~~~~~iiaG~D~~ 115 (212)
T cd03757 43 FKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTIL--YSRRF-----FPYYVFNILAGIDEE 115 (212)
T ss_pred EEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHH--HhhcC-----CCeEEEEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999 66543 899999999999965
Q ss_pred -CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhcc---------CCCCHHHHHHHHHHHHHHhhcccC-CCCceEEE
Q 030843 81 -GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN---------KDLTLQEAETIALSILKQVMEEKV-TPNNVDIA 149 (170)
Q Consensus 81 -g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~---------~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ 149 (170)
+|+||.+||+|++.+++++|+|+|+.++.++||+.|+ ++||++||++++++||+.+.+||. ++++++|+
T Consensus 116 ~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~ 195 (212)
T cd03757 116 GKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIV 195 (212)
T ss_pred CCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEE
Confidence 5999999999999999999999999999999999985 899999999999999999999996 89999999
Q ss_pred EEeCC
Q 030843 150 RVAPT 154 (170)
Q Consensus 150 ii~~~ 154 (170)
+|+++
T Consensus 196 iit~~ 200 (212)
T cd03757 196 IITKD 200 (212)
T ss_pred EEcCC
Confidence 99999
No 26
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.2e-37 Score=232.55 Aligned_cols=151 Identities=77% Similarity=1.177 Sum_probs=142.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCC--CCCccceEEEEEEEEe
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSD 78 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~--~~~rP~~v~~iiaG~d 78 (170)
|+|++|++|++||+.+|++.+.+.++.+++.|+.+++++++++.+++++++.+++|+++... ...|||+|++||||||
T Consensus 61 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D 140 (213)
T cd03753 61 MEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVD 140 (213)
T ss_pred EEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEc
Confidence 57999999999999999999999999999999999999999999999999999999975411 0469999999999999
Q ss_pred CCCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEE
Q 030843 79 ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 151 (170)
Q Consensus 79 ~~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii 151 (170)
.+||+||.+||+|++.+++++|+|+|++.++++|++.|+++||.+||++++++||+.+.+++++++++||+++
T Consensus 141 ~~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 141 ENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred CCCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9899999999999999999999999999999999999999999999999999999999888789999999975
No 27
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6e-37 Score=235.44 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=139.3
Q ss_pred Ceec----CeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHH-hcCCCCC-C-CCccceEEE
Q 030843 1 MEID----EHIGCAMSGLIADARTLVEHARVETQNHRFSYGE-PMTVESTTQALCDLALR-FGEGDEE-S-MSRPFGVSL 72 (170)
Q Consensus 1 f~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~~~la~~ls~~~~~-~~~~~~~-~-~~rP~~v~~ 72 (170)
|+|+ +||+|+.||+.||++.+++++|.+++.|++++|+ +++++.+++++++.+++ +++.... + ..|||+|++
T Consensus 34 ~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvsl 113 (236)
T cd03765 34 FVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASF 113 (236)
T ss_pred EEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEE
Confidence 4677 8999999999999999999999999999999999 89999999999998654 4443300 0 148999999
Q ss_pred EEEEEeC-CCCeEEEECCCCceecc----cEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCce
Q 030843 73 LIAGSDE-NGPSLYYTDPSGTFWQC----NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNV 146 (170)
Q Consensus 73 iiaG~d~-~g~~L~~id~~G~~~~~----~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~ 146 (170)
||+|||. +||+||++||+|++.++ +++|+|. +..++++||+.|+++||++||++++++||..+.+||. +++++
T Consensus 114 IigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~i 192 (236)
T cd03765 114 ILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPL 192 (236)
T ss_pred EEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 9999994 68999999999999998 5689996 7999999999999999999999999999999999996 89999
Q ss_pred EEEEEeCC-eEE
Q 030843 147 DIARVAPT-YHL 157 (170)
Q Consensus 147 ~i~ii~~~-~~~ 157 (170)
+|++|+|+ ++.
T Consensus 193 ev~vI~k~G~~~ 204 (236)
T cd03765 193 DLLVYERDSLQV 204 (236)
T ss_pred EEEEEECCCeee
Confidence 99999999 443
No 28
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1e-36 Score=231.43 Aligned_cols=148 Identities=55% Similarity=0.871 Sum_probs=143.8
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|++||..+|++.+.+.++.++..|+.+++++++++.+++++++.+|.|++++ +.|||+|+++|+|||++
T Consensus 61 ~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~---~~rP~~v~~iv~G~d~~ 137 (209)
T cd01911 61 FKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYG---GVRPFGVSLLIAGYDEE 137 (209)
T ss_pred EEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CccChhheEEEEEEcCC
Confidence 689999999999999999999999999999999999999999999999999999999998 89999999999999986
Q ss_pred -CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEE
Q 030843 81 -GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 151 (170)
Q Consensus 81 -g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii 151 (170)
||+||.+||.|++.+++++++|+|+..+.++||+.|+++||.+||++++++||..+.+||+++++++|+++
T Consensus 138 ~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 138 GGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred CCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999875
No 29
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-36 Score=226.93 Aligned_cols=149 Identities=21% Similarity=0.324 Sum_probs=141.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|+++|..+|++.+.++++.+++.|+.+++++++++.+++++++.++.++ |||+|++||||||+
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~--------~~~~~~~ii~G~d~~ 106 (188)
T cd03762 35 TQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYK--------EMLSAGIIVAGWDEQ 106 (188)
T ss_pred EEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhcc--------ccceeeEEEEEEcCC
Confidence 679999999999999999999999999999999999999999999999999985443 68999999999996
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEE
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 157 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~ 157 (170)
+||+||.+||.|++.+++++++|+|+++++++||+.|+++||++||++++++||..+.+||+ ++++++|++|+++ +++
T Consensus 107 ~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 107 NGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred CCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999997 8999999999998 543
No 30
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=220.53 Aligned_cols=166 Identities=33% Similarity=0.604 Sum_probs=159.0
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+|||+|+.+|+.+|+..|++++|..++.|.++||++||.+.|++.++++.|.|||+. +.||||||++.+|||..
T Consensus 66 Y~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQyg---G~RPFGVSfLYaGwd~~ 142 (249)
T KOG0178|consen 66 YKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYG---GKRPFGVSFLYAGWDDR 142 (249)
T ss_pred hhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhcc---CcCCCceeeeeeceecC
Confidence 689999999999999999999999999999999999999999999999999999999999 99999999999999985
Q ss_pred -CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCC-CCHHHHHHHHHHHHHHhhccc-CCCCceEEEEEeCC---
Q 030843 81 -GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKD-LTLQEAETIALSILKQVMEEK-VTPNNVDIARVAPT--- 154 (170)
Q Consensus 81 -g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~-~s~~ea~~l~~~~l~~~~~~d-~~~~~~~i~ii~~~--- 154 (170)
|.+||+-||+|++..|++.++|.++..+.+.|+..|+++ ++++||+.++++.|....+.. ++.+.+|++.++++
T Consensus 143 ~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k 222 (249)
T KOG0178|consen 143 YGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNK 222 (249)
T ss_pred cceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCc
Confidence 899999999999999999999999999999999999876 569999999999999999887 48999999999998
Q ss_pred --eEEcCHHHHHHHHHh
Q 030843 155 --YHLYTPSEVEAVINR 169 (170)
Q Consensus 155 --~~~~~~~ei~~~~~~ 169 (170)
++.++++||.++|++
T Consensus 223 ~v~~i~~~~ev~kll~k 239 (249)
T KOG0178|consen 223 TVLKILKKDEVLKLLEK 239 (249)
T ss_pred eEEEecCHHHHHHHHHH
Confidence 889999999999986
No 31
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-35 Score=219.63 Aligned_cols=150 Identities=27% Similarity=0.450 Sum_probs=142.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|+++++++++|..+|++.+.++++.++..|+..++++++++.+++++++.++.+++ |||++++||||+|+
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~P~~~~~iv~G~d~~ 107 (189)
T cd01912 35 FKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRG-------FPYYVSLIVGGVDKG 107 (189)
T ss_pred EEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC-------CCeEEEEEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999999999944432 79999999999997
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEE
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 157 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~ 157 (170)
++|+||.+||+|++.+++++|+|++++.++++||+.|+++||++||++++.+||..+.+||. ++++++|++|+++ ++.
T Consensus 108 ~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 108 GGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred CCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999997 8999999999998 654
No 32
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-35 Score=214.43 Aligned_cols=167 Identities=31% Similarity=0.597 Sum_probs=161.7
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+.+|+|+++|+.+|++..+.+++.++.+++++||.+||++.|++++++..|.|||+. .+||+||.+++.|+|++
T Consensus 70 f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a---~mRplg~~~~~i~~D~E 146 (246)
T KOG0182|consen 70 FRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNA---AMRPLGVAATLIGVDEE 146 (246)
T ss_pred EEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhh---hhcccceeEEEEEeccc
Confidence 789999999999999999999999999999999999999999999999999999999999 99999999999999985
Q ss_pred -CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCC--CCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC---
Q 030843 81 -GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKD--LTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--- 154 (170)
Q Consensus 81 -g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~--- 154 (170)
||.+|.+||.|-+..++++|.|-....+.++|||+++++ +|.+|++++++.||..+..-|.....+||.+++++
T Consensus 147 ~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~ 226 (246)
T KOG0182|consen 147 RGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPE 226 (246)
T ss_pred cCcceEeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcc
Confidence 899999999999999999999999999999999999987 67999999999999999998898899999999998
Q ss_pred eEEcCHHHHHHHHHhC
Q 030843 155 YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 ~~~~~~~ei~~~~~~~ 170 (170)
|+.|+.+||++.|..|
T Consensus 227 f~~Ls~~eie~hL~~I 242 (246)
T KOG0182|consen 227 FRILSAEEIEEHLQAI 242 (246)
T ss_pred eeeccHHHHHHHHHHh
Confidence 9999999999999865
No 33
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.3e-34 Score=215.06 Aligned_cols=146 Identities=47% Similarity=0.784 Sum_probs=140.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|+++++++++|..+|++.+.+.++.++..|+.+++++++++.++++++++++.+++. .|||++++++||+|.
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~p~~~~~lv~G~d~~ 109 (182)
T cd01906 35 FKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQS-----LRPLGVSLLVAGVDEE 109 (182)
T ss_pred EEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----ccChheEEEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999999999888764 599999999999997
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEE
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARV 151 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii 151 (170)
.||+||.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||..+.++|. +++.++|+++
T Consensus 110 ~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 110 GGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred CCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999997 8999999875
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=5.3e-35 Score=218.42 Aligned_cols=148 Identities=41% Similarity=0.702 Sum_probs=143.0
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|+++++||..+|++.+.++++.++..|++.++.+++++.+++.+++.++.++.+. +.||+++++++||||++
T Consensus 40 ~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~p~~~~~li~G~d~~ 116 (190)
T PF00227_consen 40 FKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRS---GRRPYGVSLLIAGYDED 116 (190)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHT---TTSTTSEEEEEEEEETT
T ss_pred eeccCcceeeccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccc---cccCccccceeeeeccc
Confidence 689999999999999999999999999999999999999999999999999999999887 88999999999999987
Q ss_pred C-CeEEEECCCCceecc-cEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEE
Q 030843 81 G-PSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARV 151 (170)
Q Consensus 81 g-~~L~~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii 151 (170)
+ |+||.+||+|++.++ +++|+|+|++.++++|++.|+++||++||++++++||+.+.++|. ++++++|++|
T Consensus 117 ~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 117 GGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp TEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred cccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 6 999999999999999 699999999999999999999999999999999999999999996 8999999986
No 35
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-34 Score=211.40 Aligned_cols=165 Identities=36% Similarity=0.578 Sum_probs=158.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+||+|++++++|+.+|++.|.++++.+|..++..+++++++..|...|.+.+|..||+. ++|||||.++++|+|+.
T Consensus 64 ~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~y---grRpYGVGllv~gYDe~ 140 (264)
T KOG0863|consen 64 FKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRY---GRRPYGVGLLVAGYDES 140 (264)
T ss_pred EecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhh---CCccccceEEEEeecCC
Confidence 689999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhcc--CCCCHHHHHHHHHHHHHHhhcc--cCCCCceEEEEEeCC--
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN--KDLTLQEAETIALSILKQVMEE--KVTPNNVDIARVAPT-- 154 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ea~~l~~~~l~~~~~~--d~~~~~~~i~ii~~~-- 154 (170)
||+||.++|+|++.++++.++|+.++.++++||++.. ++++.+|.+..+++||+..... ++++.+++|.|+.||
T Consensus 141 G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p 220 (264)
T KOG0863|consen 141 GPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP 220 (264)
T ss_pred CceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc
Confidence 9999999999999999999999999999999999875 4899999999999999998864 368999999999999
Q ss_pred eEEcCHHHHHHHHH
Q 030843 155 YHLYTPSEVEAVIN 168 (170)
Q Consensus 155 ~~~~~~~ei~~~~~ 168 (170)
|..++.+++.+++.
T Consensus 221 f~~~d~~~~~k~~~ 234 (264)
T KOG0863|consen 221 FTILDQKDVAKYVD 234 (264)
T ss_pred eEeecHHHHHHHHH
Confidence 99999999998864
No 36
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=207.19 Aligned_cols=162 Identities=30% Similarity=0.495 Sum_probs=150.7
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|.|++||+|+++|+.+|.+.+.++++.++..|+.+|+.++|...++.++++++|.||.++ ..|||||+.++++||.+
T Consensus 68 ~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~---~vRpfG~~~~~~~yd~~ 144 (254)
T KOG0184|consen 68 FSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYS---SVRPFGASTILGSYDDE 144 (254)
T ss_pred EeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhh---ccccccceEEEEEEeCC
Confidence 679999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC----e
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT----Y 155 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~----~ 155 (170)
||+||.+||+|..+.|+++|+|.|.+.+++.|||+--.+|+.+|+++.+.+.|..+.+..- ....+||.|+..+ .
T Consensus 145 g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h 224 (254)
T KOG0184|consen 145 GPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLH 224 (254)
T ss_pred CceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCcc
Confidence 9999999999999999999999999999999999988899999999999999999998754 5778899999876 5
Q ss_pred EEcCHHHHHHH
Q 030843 156 HLYTPSEVEAV 166 (170)
Q Consensus 156 ~~~~~~ei~~~ 166 (170)
+.++. |+.+.
T Consensus 225 ~~vp~-el~~e 234 (254)
T KOG0184|consen 225 EKVPS-ELLEE 234 (254)
T ss_pred ccCcH-HHHHH
Confidence 55554 55443
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-33 Score=199.30 Aligned_cols=155 Identities=22% Similarity=0.237 Sum_probs=148.0
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
++|++++.|+++|..+|+.++.+++++.++.|+.++|.++||+.+|++.++.++.+.+ +.+||.|++++||+|++
T Consensus 36 ~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LR-----sr~~yqV~~LvaGYd~~ 110 (200)
T KOG0177|consen 36 HRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLR-----SRTPYQVNILVAGYDPE 110 (200)
T ss_pred EEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHh-----cCCCceEEEEEeccCCC
Confidence 4689999999999999999999999999999999999999999999999999999987 45899999999999985
Q ss_pred -CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEE
Q 030843 81 -GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 157 (170)
Q Consensus 81 -g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~ 157 (170)
||.||++|..|+..+.++++.|.++.++.++|++.|+|+||.+||+++..+|+.++.+|.+ +.++|.|.+|+|| ++.
T Consensus 111 ~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~ 190 (200)
T KOG0177|consen 111 EGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRK 190 (200)
T ss_pred CCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCcee
Confidence 7999999999999999999999999999999999999999999999999999999999986 8999999999999 887
Q ss_pred cCH
Q 030843 158 YTP 160 (170)
Q Consensus 158 ~~~ 160 (170)
++.
T Consensus 191 ~~~ 193 (200)
T KOG0177|consen 191 LDD 193 (200)
T ss_pred ccc
Confidence 754
No 38
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-30 Score=192.60 Aligned_cols=159 Identities=24% Similarity=0.340 Sum_probs=152.7
Q ss_pred eecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCCC
Q 030843 2 EIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG 81 (170)
Q Consensus 2 ~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~g 81 (170)
+||++.+-+++|-++||+.+.+.+.++|+.|++++++.|++...++.|++++.+|.... +.+..+|||||.+|
T Consensus 107 eIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmG-------LsmGtMi~G~Dk~G 179 (285)
T KOG0175|consen 107 EINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMG-------LSMGTMIAGWDKKG 179 (285)
T ss_pred eechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcc-------hhheeeEeeccCCC
Confidence 68999999999999999999999999999999999999999999999999998887654 78899999999999
Q ss_pred CeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEEcC
Q 030843 82 PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYT 159 (170)
Q Consensus 82 ~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~~~ 159 (170)
|.||.||..|+....+-.++|+|+.+|+++|+..|+++||.|||.+|++++|..+..||. ++.-+.++.|+.+ +..++
T Consensus 180 P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~ 259 (285)
T KOG0175|consen 180 PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVS 259 (285)
T ss_pred CceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecC
Confidence 999999999999999999999999999999999999999999999999999999999997 9999999999999 99999
Q ss_pred HHHHHHHH
Q 030843 160 PSEVEAVI 167 (170)
Q Consensus 160 ~~ei~~~~ 167 (170)
..++.++.
T Consensus 260 ~~Dv~~L~ 267 (285)
T KOG0175|consen 260 NTDVSELH 267 (285)
T ss_pred CccHHHHH
Confidence 99998884
No 39
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-29 Score=184.49 Aligned_cols=147 Identities=22% Similarity=0.363 Sum_probs=140.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+++|+++++.+|.++|+..|...++...+.|+.+++..|++..+|++|+..+ |.+|+ .||.+..+++|+|++
T Consensus 64 ~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~L--Y~kRF-----FPYYv~~ilaGiDee 136 (235)
T KOG0179|consen 64 FKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTIL--YSKRF-----FPYYVFNILAGIDEE 136 (235)
T ss_pred eeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH--hhccc-----ccceeeeeeeccccc
Confidence 68999999999999999999999999999999999999999999999999999 98877 999999999999997
Q ss_pred C-CeEEEECCCCceecccEEEeCCCChhhhHHHHhhcc-----------CCCCHHHHHHHHHHHHHHhhcccC-CCCceE
Q 030843 81 G-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN-----------KDLTLQEAETIALSILKQVMEEKV-TPNNVD 147 (170)
Q Consensus 81 g-~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-----------~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~ 147 (170)
| +.+|..||.|++.+..+.|-|+++.++.|+|+.... ..+|+|+|+.++.+++..+.+||+ ++++++
T Consensus 137 GKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~ 216 (235)
T KOG0179|consen 137 GKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLE 216 (235)
T ss_pred CceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEE
Confidence 6 999999999999999999999999999999996532 258999999999999999999999 899999
Q ss_pred EEEEeCC
Q 030843 148 IARVAPT 154 (170)
Q Consensus 148 i~ii~~~ 154 (170)
|+|++||
T Consensus 217 i~I~tk~ 223 (235)
T KOG0179|consen 217 ICIITKD 223 (235)
T ss_pred EEEEecC
Confidence 9999999
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.7e-28 Score=181.37 Aligned_cols=145 Identities=26% Similarity=0.390 Sum_probs=139.5
Q ss_pred eecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCCC
Q 030843 2 EIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG 81 (170)
Q Consensus 2 ~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~g 81 (170)
.|.++|+||.+|..+|...+.+.+..+.+.++++.++++.+-...+++.+.+.+|... .++.+|++|+|.+|
T Consensus 73 ~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~--------IgA~LiiGGvD~TG 144 (271)
T KOG0173|consen 73 FIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGH--------IGAALILGGVDPTG 144 (271)
T ss_pred hcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCc--------ccceeEEccccCCC
Confidence 4789999999999999999999999999999999999999999999999999877654 69999999999999
Q ss_pred CeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC
Q 030843 82 PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 154 (170)
Q Consensus 82 ~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~ 154 (170)
||||++.|.|+...-+|++.|+|+..+.++||.+|+++|+.|||.+|+.+|+......|+ ++.++++|+|++.
T Consensus 145 pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~ 218 (271)
T KOG0173|consen 145 PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKK 218 (271)
T ss_pred CceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999998 9999999999977
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=177.96 Aligned_cols=159 Identities=19% Similarity=0.310 Sum_probs=146.7
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHR-FSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
|+++||+++|+||..+|.|.|.+.+.+...+.. ..-|+.+.|+.++++|++++ |.+|+ .++|++.+++|+|+|.
T Consensus 76 ~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRs---KmnPlwntlvVgGv~~ 150 (256)
T KOG0185|consen 76 FKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRS---KMNPLWNTLVVGGVDN 150 (256)
T ss_pred EEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhh---ccCchhhheeEeeecC
Confidence 689999999999999999999999998877644 55668999999999999999 99998 9999999999999999
Q ss_pred CC-CeEEEECCCCceecccEEEeCCCChhhhHHHHhhcc---CCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC
Q 030843 80 NG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN---KDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 154 (170)
Q Consensus 80 ~g-~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~---~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~ 154 (170)
+| |+|.++|..|..++.+..|||.|+.++.++|++.+. ++++.+||..++.+||+.+.+||. +.++|+|++|+++
T Consensus 151 ~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~e 230 (256)
T KOG0185|consen 151 TGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEE 230 (256)
T ss_pred CCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEccc
Confidence 65 999999999999999999999999999999999987 479999999999999999999998 8999999999999
Q ss_pred -eEEcCHHHHH
Q 030843 155 -YHLYTPSEVE 164 (170)
Q Consensus 155 -~~~~~~~ei~ 164 (170)
+..-.|.+|+
T Consensus 231 Gv~i~~p~qv~ 241 (256)
T KOG0185|consen 231 GVTISKPYQVK 241 (256)
T ss_pred ceEecCceeee
Confidence 7776666553
No 42
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=168.28 Aligned_cols=157 Identities=17% Similarity=0.279 Sum_probs=143.9
Q ss_pred eecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC-
Q 030843 2 EIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN- 80 (170)
Q Consensus 2 ~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~- 80 (170)
+|.|||+||-||.++|.|.+.+.++..+..|..+++.++++...|+.++++...|.. .+.+.+|+||||++
T Consensus 55 ~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re--------~L~AgliVAGwD~~~ 126 (224)
T KOG0174|consen 55 PITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYRE--------MLSAGLIVAGWDEKE 126 (224)
T ss_pred eccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHH--------hhhcceEEeeccccc
Confidence 689999999999999999999999999999999999999999999999999944443 47899999999985
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC---eE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT---YH 156 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~---~~ 156 (170)
|.++|.+..-|.+.+.++..-|+|+.+++++++..|+++||.||+++++++++..+..||- ++..+.+.+|+++ .+
T Consensus 127 gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~ 206 (224)
T KOG0174|consen 127 GGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERR 206 (224)
T ss_pred CceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEE
Confidence 7999999777888889999999999999999999999999999999999999999999996 8999999999999 66
Q ss_pred EcCHHHHHHH
Q 030843 157 LYTPSEVEAV 166 (170)
Q Consensus 157 ~~~~~ei~~~ 166 (170)
.+.++++..+
T Consensus 207 ~~~~d~~~~~ 216 (224)
T KOG0174|consen 207 FFPGDKLGQF 216 (224)
T ss_pred EecCCccccc
Confidence 6677766544
No 43
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.1e-26 Score=161.56 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=141.9
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+++|+.++|.+|+..|.|.+.++++...+.|+++.+++|.|+.+++++|..+ |.+|+ -||-+..+|||.|++
T Consensus 43 ~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~l--YekRf-----gpYf~~PvVAGl~~~ 115 (204)
T KOG0180|consen 43 FKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLL--YEKRF-----GPYFTEPVVAGLDDD 115 (204)
T ss_pred eecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHH--HHhhc-----CCcccceeEeccCCC
Confidence 68999999999999999999999999999999999999999999999999999 88876 899999999999986
Q ss_pred C-CeEEEECCCCceec-ccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC
Q 030843 81 G-PSLYYTDPSGTFWQ-CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 154 (170)
Q Consensus 81 g-~~L~~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~ 154 (170)
+ |++...|..|+... ..+++.|.+++...+..|..|+|||..++..+.+.++|-++.+||. +++...|.+|+||
T Consensus 116 ~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kd 192 (204)
T KOG0180|consen 116 NKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKD 192 (204)
T ss_pred CCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccc
Confidence 5 99999999999987 4899999999999999999999999999999999999999999996 9999999999999
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.93 E-value=1.9e-24 Score=156.21 Aligned_cols=128 Identities=43% Similarity=0.658 Sum_probs=123.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
++++++++++++|..+|++.+.++++.+++.|+..+++++++..+++.+++.++.+++ .||++++++++|+|.+
T Consensus 35 ~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~~~~iiag~~~~ 108 (164)
T cd01901 35 GKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQ------GRPFGVNLIVAGVDEG 108 (164)
T ss_pred EEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC------CCCcceEEEEEEEcCC
Confidence 4688999999999999999999999999999999999999999999999999988876 3899999999999988
Q ss_pred CCeEEEECCCCceecc-cEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHH
Q 030843 81 GPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILK 134 (170)
Q Consensus 81 g~~L~~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~ 134 (170)
+|+||.+||.|.+.+. +++++|+++..+.++|++.++++++.+|+++++.+||.
T Consensus 109 ~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 109 GGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKALK 163 (164)
T ss_pred CCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 8999999999999999 99999999999999999999999999999999999986
No 45
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.92 E-value=8.4e-24 Score=155.49 Aligned_cols=132 Identities=23% Similarity=0.272 Sum_probs=111.0
Q ss_pred Cee-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
++| +++++|++||..+|+|.|.+.++.+++.|+. + + ++..++.+.... .+ . ..+|+.+++|++ |.
T Consensus 36 ~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~~a~l~~~l~-~~-~-----~~~~l~~~~lv~--d~ 101 (172)
T PRK05456 36 RRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRAAVELAKDWR-TD-R-----YLRRLEAMLIVA--DK 101 (172)
T ss_pred EEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHHHHHHHHHHH-hc-c-----CCCccEEEEEEE--cC
Confidence 578 9999999999999999999999999999883 2 1 466665443321 11 1 336888999994 33
Q ss_pred CCCeEEEECCCCceecc--cEEEeCCCChhhhHHHHhhcc-CCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEE
Q 030843 80 NGPSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYN-KDLTLQEAETIALSILKQVMEEKV-TPNNVDIARV 151 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii 151 (170)
|+||.+|+.|+..+. ++.++|+|+.++.++||+.|+ ++| ||++++++|++.+.+||. ++++|+|..+
T Consensus 102 --~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~~ 172 (172)
T PRK05456 102 --EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEEL 172 (172)
T ss_pred --CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEEC
Confidence 799999999999766 899999999999999999999 999 999999999999999998 9999998653
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.90 E-value=1.3e-22 Score=148.44 Aligned_cols=130 Identities=20% Similarity=0.166 Sum_probs=108.2
Q ss_pred CeecC-eEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccce-EEEEEEEEe
Q 030843 1 MEIDE-HIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFG-VSLLIAGSD 78 (170)
Q Consensus 1 f~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~-v~~iiaG~d 78 (170)
++|+| |++|+++|..+|++.|.++++.+++.|+.+.++ .+++.+.... -| ..+|+. +.++++++|
T Consensus 35 ~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~-~~-------~~~~~l~a~~iv~~~~ 101 (171)
T cd01913 35 RRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWR-TD-------RYLRRLEAMLIVADKE 101 (171)
T ss_pred EEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHH-hc-------cCcCceEEEEEEeCCC
Confidence 47888 999999999999999999999999999988774 3344333221 12 224555 777776553
Q ss_pred CCCCeEEEECCCCceecc--cEEEeCCCChhhhHHHHhhccCC-CCHHHHHHHHHHHHHHhhcccC-CCCceEEEE
Q 030843 79 ENGPSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYNKD-LTLQEAETIALSILKQVMEEKV-TPNNVDIAR 150 (170)
Q Consensus 79 ~~g~~L~~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i 150 (170)
+||.+||.|.+.+. ++.++|+|+.++.++||..|+++ || +.++++++++.+.+||+ ++++++|..
T Consensus 102 ----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 102 ----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred ----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 99999999999998 49999999999999999999995 99 66999999999999998 999998864
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.89 E-value=4.7e-22 Score=145.45 Aligned_cols=131 Identities=23% Similarity=0.248 Sum_probs=107.3
Q ss_pred Cee-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
++| +||++|+++|..+|++.|.++++.+++.|+... .+.+++.+++.. -| + ..+.+.+.++++|+
T Consensus 35 ~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~~-~~-~-----~~~~l~a~~iv~~~-- 100 (171)
T TIGR03692 35 RRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDWR-TD-R-----YLRRLEAMLIVADK-- 100 (171)
T ss_pred EEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHHh-hc-c-----cccccEEEEEEEcC--
Confidence 478 599999999999999999999999999988633 355566555421 11 1 12334477777654
Q ss_pred CCCeEEEECCCCceecc--cEEEeCCCChhhhHHHHhhc-cCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEE
Q 030843 80 NGPSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQY-NKDLTLQEAETIALSILKQVMEEKV-TPNNVDIAR 150 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~-~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i 150 (170)
++||.+||.|.+.+. ++.++|+|+.++.++||..| +++|+ |+++++++++.+.+||. ++++++|..
T Consensus 101 --~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 101 --ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 399999999999996 69999999999999999999 46777 99999999999999998 999998864
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=9.4e-08 Score=70.84 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=114.4
Q ss_pred EEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHhcCCCCCC---CCccceEEEEEEEEeCCC-
Q 030843 7 IGCAMSGLIADARTLVEHARVETQNHRFSYG-EPMTVESTTQALCDLALRFGEGDEES---MSRPFGVSLLIAGSDENG- 81 (170)
Q Consensus 7 i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls~~~~~~~~~~~~~---~~rP~~v~~iiaG~d~~g- 81 (170)
++++.+|..+-.|.+++.+.+..+...-..- .-++.-..+..+.....+...+..+. ..--|.|++|++|.=.++
T Consensus 45 lvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~p 124 (255)
T COG3484 45 LVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEP 124 (255)
T ss_pred EEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCC
Confidence 5678899999999999999887753222111 12355566666766665544443221 234789999999976544
Q ss_pred CeEEEECCCCceec----ccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCC-CCceEEEEEeCC
Q 030843 82 PSLYYTDPSGTFWQ----CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVT-PNNVDIARVAPT 154 (170)
Q Consensus 82 ~~L~~id~~G~~~~----~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~-~~~~~i~ii~~~ 154 (170)
|.||.|.|.|++.+ .++..+|. +.+-+++|++.+..+++++||.+.+.-++....+.+++ +-.+++-+..+|
T Consensus 125 p~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~d 201 (255)
T COG3484 125 PRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEAD 201 (255)
T ss_pred ceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEecc
Confidence 89999999999985 48999998 77899999999999999999999999999999888885 888899999988
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-07 Score=68.09 Aligned_cols=130 Identities=23% Similarity=0.259 Sum_probs=99.2
Q ss_pred cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCCCCe
Q 030843 4 DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS 83 (170)
Q Consensus 4 ~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~g~~ 83 (170)
+.+++.|++|..+|++.|.+.+..+++.|. ..|.+..-...++++.-- ..|-+.+-++++-- -.
T Consensus 43 ~gkvlaGFAGstADaftLfe~fe~kle~~~---------g~L~raavelaKdwr~Dk---~lr~LEAmllVad~----~~ 106 (178)
T COG5405 43 NGKVLAGFAGSTADAFTLFERFEAKLEQYQ---------GDLFRAAVELAKDWRTDK---YLRKLEAMLLVADK----TH 106 (178)
T ss_pred CCcEEEEecccchhHHHHHHHHHHHHHHcc---------CcHHHHHHHHHHhhhhhh---HHHHHhhheeEeCC----Cc
Confidence 468999999999999999999999999874 223333333333444322 55667777777644 35
Q ss_pred EEEECCCCceecc--cEEEeCCCChhhhHHHHhhccC-CCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEe
Q 030843 84 LYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYNK-DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVA 152 (170)
Q Consensus 84 L~~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~-~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~ 152 (170)
++-+...|-+.+. ...|+|||..++.+.-...++. ++| |.+++.++|..+.+-++ +..++.|..+.
T Consensus 107 il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 107 ILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred EEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 6778888888874 5899999999999999888754 677 88899999999998776 78888887664
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=90.79 E-value=1.1 Score=33.51 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=42.3
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCC-CCceEEEEEeCC
Q 030843 106 EGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVT-PNNVDIARVAPT 154 (170)
Q Consensus 106 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~-~~~~~i~ii~~~ 154 (170)
+.+...|.++|++.|+++++.++..++|..+.....+ ++.+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 6678889999999999999999999999999877554 788888877765
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.32 E-value=1.1 Score=34.78 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=51.1
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCC-CCceEEEEEeCC---eEEcCHHHHHHHH
Q 030843 106 EGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVT-PNNVDIARVAPT---YHLYTPSEVEAVI 167 (170)
Q Consensus 106 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~-~~~~~i~ii~~~---~~~~~~~ei~~~~ 167 (170)
+.++.+|.+.|.+.++++++.++..+++..+..-..+ +..+++..+.++ +.+|-..+|+.+.
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~ 197 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLR 197 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999866553 789999999887 6677777777654
No 52
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=88.74 E-value=0.7 Score=32.45 Aligned_cols=44 Identities=39% Similarity=0.402 Sum_probs=40.0
Q ss_pred EEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHH
Q 030843 85 YYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETI 128 (170)
Q Consensus 85 ~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 128 (170)
..+|.+|.+...++-..|-|+..+.+-+-..|-..+|++||..+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 46788999999999999999999999999999999999998753
No 53
>PRK08868 flagellar protein FlaG; Provisional
Probab=81.01 E-value=6.4 Score=28.14 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhccc---C--CCCceEEEEEeCC----eEEcCHHHHHHHHHhC
Q 030843 122 LQEAETIALSILKQVMEEK---V--TPNNVDIARVAPT----YHLYTPSEVEAVINRL 170 (170)
Q Consensus 122 ~~ea~~l~~~~l~~~~~~d---~--~~~~~~i~ii~~~----~~~~~~~ei~~~~~~~ 170 (170)
+++|++-+.+.+....... + ..+.+-|.|++++ +|++|+||+-++.+.|
T Consensus 73 l~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l 130 (144)
T PRK08868 73 LEKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRL 130 (144)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 4456677777776665331 2 3567889999998 9999999998887654
No 54
>PRK07738 flagellar protein FlaG; Provisional
Probab=78.22 E-value=8.8 Score=26.47 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhccc---C--CCCceEEEEEeCC----eEEcCHHHHHHHHHhC
Q 030843 122 LQEAETIALSILKQVMEEK---V--TPNNVDIARVAPT----YHLYTPSEVEAVINRL 170 (170)
Q Consensus 122 ~~ea~~l~~~~l~~~~~~d---~--~~~~~~i~ii~~~----~~~~~~~ei~~~~~~~ 170 (170)
++++++-+.+.+....... + ..+.+-|.+++++ +|++||+++-+++++|
T Consensus 48 l~~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m 105 (117)
T PRK07738 48 LEEVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERTNEVIREIPPKKLLDMYAAM 105 (117)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCeeeeeCCCHHHHHHHHHH
Confidence 4456666666666543221 2 3578899999997 9999999999887764
No 55
>PRK08452 flagellar protein FlaG; Provisional
Probab=75.14 E-value=14 Score=25.69 Aligned_cols=49 Identities=8% Similarity=0.044 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhccc---C--CCCceEEEEEeCC----eEEcCHHHHHHHHHhC
Q 030843 122 LQEAETIALSILKQVMEEK---V--TPNNVDIARVAPT----YHLYTPSEVEAVINRL 170 (170)
Q Consensus 122 ~~ea~~l~~~~l~~~~~~d---~--~~~~~~i~ii~~~----~~~~~~~ei~~~~~~~ 170 (170)
+++|++-+.+.+....... + ..+.+-|.+++++ +|++||+++-++.++|
T Consensus 55 l~~~ve~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m 112 (124)
T PRK08452 55 LEELTEKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEANGGKVIREIPSKEAIELMEYM 112 (124)
T ss_pred HHHHHHHHHHHHHhhCCceEEEEcCCCCcEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 4455555555555543221 2 3567888999987 9999999998887654
No 56
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=69.45 E-value=7.7 Score=25.92 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCceEEEEEeCC----eEEcCHHHHHHHHHhC
Q 030843 143 PNNVDIARVAPT----YHLYTPSEVEAVINRL 170 (170)
Q Consensus 143 ~~~~~i~ii~~~----~~~~~~~ei~~~~~~~ 170 (170)
.+.+-|.+++++ +|++|++++-.+.+.|
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHH
Confidence 577899999997 8999999998887653
No 57
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=58.76 E-value=5 Score=22.71 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=23.2
Q ss_pred EeCCCChhhhHHHHhhc-cCCCCHHHHHHHHHH
Q 030843 100 AIGSGSEGADSSLQEQY-NKDLTLQEAETIALS 131 (170)
Q Consensus 100 a~G~g~~~~~~~Le~~~-~~~~s~~ea~~l~~~ 131 (170)
+.|+....+...+.+.. .++++.++.++.+.+
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 35788888888888877 788998887776654
No 58
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=55.04 E-value=32 Score=21.15 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 030843 22 VEHARVETQNHRFSYGEPMTVESTTQALCDLA 53 (170)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~ 53 (170)
++.+++.........|++++.+.+|..+.--.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~ 34 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISV 34 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccH
Confidence 55666777777889999999999999876433
No 59
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=53.33 E-value=15 Score=21.02 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=25.5
Q ss_pred EEECCCCceecccEEEeCCCChhhhHHHHhhc
Q 030843 85 YYTDPSGTFWQCNAKAIGSGSEGADSSLQEQY 116 (170)
Q Consensus 85 ~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 116 (170)
|.|+|+|.+...--...|.....+...|+...
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988777778888877777777653
No 60
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=51.27 E-value=62 Score=23.07 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=33.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC-----eEEcCH
Q 030843 117 NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-----YHLYTP 160 (170)
Q Consensus 117 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~-----~~~~~~ 160 (170)
.+.+|+++|.+++..++..+.+. +..+.|.+++.+ +.+.+.
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~---g~~VtvaVVD~~G~~~a~~RmDg 50 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL---GVPVTVAVVDAGGHLVALERMDG 50 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh---CCceEEEEECCCCCEEEEEecCC
Confidence 35789999999999999998763 789999999998 555543
No 61
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=50.34 E-value=20 Score=26.99 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEe
Q 030843 38 EPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD 78 (170)
Q Consensus 38 ~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d 78 (170)
.+-+|++++..++++++.|.+++ +.+ .++++|+.
T Consensus 43 ~~rtP~~~a~Dl~~~i~~y~~~w---~~~----~vvLiGYS 76 (192)
T PF06057_consen 43 SERTPEQTAADLARIIRHYRARW---GRK----RVVLIGYS 76 (192)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHh---CCc----eEEEEeec
Confidence 35589999999999999999987 443 34777874
No 62
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=48.66 E-value=42 Score=22.50 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Q 030843 18 ARTLVEHARVETQNHRFSYGE-PMTVESTT 46 (170)
Q Consensus 18 ~~~l~~~~~~~~~~~~~~~~~-~i~~~~la 46 (170)
+..+++.++.+++.|++.+++ +++.+.|.
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L~ 78 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDLK 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 467888999999999999998 67766654
No 63
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.45 E-value=41 Score=30.35 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=59.9
Q ss_pred HhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCCCCeEEEECCCCceecccEEEeCCCChhhhHHHHh
Q 030843 35 SYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQE 114 (170)
Q Consensus 35 ~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~ 114 (170)
..|++|.+.+|.++..-..|-... +-|-|..++|..=-+||.||+.|-.|.-.-.++.-...--..+-..+-+
T Consensus 210 ksgEeIl~a~LS~FY~ll~Q~Lq~-------kdyvchpmLasl~ln~p~LFccdLkGId~llP~Fi~ALd~il~dre~~r 282 (1215)
T KOG3652|consen 210 KSGEEILNAQLSNFYALLFQCLQE-------KDYVCHPMLASLFLNGPNLFCCDLKGIDSLLPHFIFALDIILIDREKLR 282 (1215)
T ss_pred cCcccccHHHHHHHHHHHHHHHhh-------cccccchhheeeeecCCceeeecCCchhHhhHHHHHHHHhhhccHHHhh
Confidence 578899999999998877754433 3456666666665579999999999865444332221111222222222
Q ss_pred hccCCCCHHHHHHHHHHHHHHhh
Q 030843 115 QYNKDLTLQEAETIALSILKQVM 137 (170)
Q Consensus 115 ~~~~~~s~~ea~~l~~~~l~~~~ 137 (170)
+++.-.+.-|.....+++|..+.
T Consensus 283 kfkS~~n~tElRRa~in~LlSli 305 (1215)
T KOG3652|consen 283 KFKSISNETELRRACINALLSLI 305 (1215)
T ss_pred hccccCCHHHHHHHHHHHHHHhc
Confidence 33333446777777788877765
No 64
>PRK09732 hypothetical protein; Provisional
Probab=47.44 E-value=77 Score=22.30 Aligned_cols=40 Identities=18% Similarity=0.026 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC-----eEEcCH
Q 030843 118 KDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-----YHLYTP 160 (170)
Q Consensus 118 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~-----~~~~~~ 160 (170)
+.||++.|.+++..++..+.+. +..+.|+|++.. |.+.+.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~---g~~v~iaVvD~~G~l~a~~RmDg 49 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN---NWSVSIAVADDGGHLLALSRMDD 49 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh---CCCEEEEEEcCCCCEEEEEEcCC
Confidence 4689999999999999999875 558999999987 666543
No 65
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=47.15 E-value=23 Score=24.51 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCceEEEEEeCC----eEEcCHHHHHHHHHhC
Q 030843 143 PNNVDIARVAPT----YHLYTPSEVEAVINRL 170 (170)
Q Consensus 143 ~~~~~i~ii~~~----~~~~~~~ei~~~~~~~ 170 (170)
.+.+-|.|++++ +|++||+++-.+.+.|
T Consensus 77 lg~~vVkI~d~~TgeVIRqIPpee~L~l~~r~ 108 (120)
T COG1334 77 LGELVVKIIDKDTGEVIRQIPPEEALELAARM 108 (120)
T ss_pred cCcEEEEEEECCCCcchhhCChHHHHHHHHHH
Confidence 456678899988 9999999998887654
No 66
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=46.62 E-value=52 Score=21.30 Aligned_cols=32 Identities=6% Similarity=0.307 Sum_probs=24.4
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHhh
Q 030843 106 EGADSSLQEQYNKDLTLQEAETIALSILKQVM 137 (170)
Q Consensus 106 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 137 (170)
..+..+|++.-.|++|+++.+.+=.+++..+.
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~lL~ 63 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQELF 63 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45778888888899999988877666665543
No 67
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=45.35 E-value=82 Score=20.32 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=34.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC---eEEcCHHHHHHHHH
Q 030843 117 NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVIN 168 (170)
Q Consensus 117 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~---~~~~~~~ei~~~~~ 168 (170)
.+..|.++..+.+++..... ....|.|.+++.+ +..-+++|++.-++
T Consensus 17 d~~~s~e~L~~~v~~~c~~~-----~~q~ft~kw~DEEGDp~tiSS~~EL~EA~r 66 (83)
T cd06404 17 DPSISLEELCNEVRDMCRFH-----NDQPFTLKWIDEEGDPCTISSQMELEEAFR 66 (83)
T ss_pred CCCcCHHHHHHHHHHHhCCC-----CCCcEEEEEECCCCCceeecCHHHHHHHHH
Confidence 34677777777766655442 4568999999997 99999999877543
No 68
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=43.47 E-value=74 Score=20.50 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Q 030843 14 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 60 (170)
Q Consensus 14 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 60 (170)
-.+|++.+.+.+++.+.--+-.--.+-+-+.+++.+-..++.|..++
T Consensus 41 q~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~M 87 (95)
T PF08289_consen 41 QAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKRM 87 (95)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHH
Confidence 56899999999999888777655566778899999999999888765
No 69
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=42.11 E-value=52 Score=22.71 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC
Q 030843 118 KDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 154 (170)
Q Consensus 118 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~ 154 (170)
|.+|.++|.+++..++..+.++ +..+-|+|++..
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~---g~~v~iaVvd~~ 34 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER---GLPVSIAVVDAG 34 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT---T---EEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHHHHh---CCCeEEEEEECC
Confidence 3578999999999999999876 334888889887
No 70
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=40.19 E-value=39 Score=21.73 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC
Q 030843 119 DLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 154 (170)
Q Consensus 119 ~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~ 154 (170)
.+-.+|++++|..|+.+..+. ++-++++|.+...+
T Consensus 33 ~l~qqEvLnvA~MAvQT~Q~~-L~lNGv~V~v~~~~ 67 (82)
T PF11773_consen 33 ELQQQEVLNVAQMAVQTGQDH-LSLNGVEVQVERTQ 67 (82)
T ss_pred HHHHHHHHHHHHHHHHhCcce-EEEcCeEEEEEEcC
Confidence 356789999999999998765 56677777777766
No 71
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=38.58 E-value=39 Score=17.18 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=16.5
Q ss_pred EEEEEEEeCCCCeEEEECCCCc
Q 030843 71 SLLIAGSDENGPSLYYTDPSGT 92 (170)
Q Consensus 71 ~~iiaG~d~~g~~L~~id~~G~ 92 (170)
+..+.|.-+..|.||.|-.+|.
T Consensus 5 ~~~v~G~rPg~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARPGSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccCCCcEEEEeeccCc
Confidence 3456677777799999987775
No 72
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=36.00 E-value=86 Score=18.00 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=19.7
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHhh
Q 030843 109 DSSLQEQYNKDLTLQEAETIALSILKQVM 137 (170)
Q Consensus 109 ~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 137 (170)
..++++.-++++|+++++.+-.+++..+.
T Consensus 9 e~Iv~~Le~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 9 EEIVEKLESGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34555555689999999988888877654
No 73
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=34.95 E-value=35 Score=18.07 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=10.0
Q ss_pred CCeEEEECCCCceecccEEEeC
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIG 102 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G 102 (170)
|--+-.+||.|....+.+-+.|
T Consensus 5 G~l~~~~d~~G~~~~y~YD~~g 26 (38)
T PF05593_consen 5 GRLTSVTDPDGRTTRYTYDAAG 26 (38)
T ss_pred CCEEEEEcCCCCEEEEEECCCC
Confidence 3333444555555544444443
No 74
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.62 E-value=2.1e+02 Score=21.81 Aligned_cols=94 Identities=20% Similarity=0.164 Sum_probs=64.5
Q ss_pred EEEEEEEEeCCCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC--------CCCHHHHHHHHHHHHHHhhcccC
Q 030843 70 VSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK--------DLTLQEAETIALSILKQVMEEKV 141 (170)
Q Consensus 70 v~~iiaG~d~~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--------~~s~~ea~~l~~~~l~~~~~~d~ 141 (170)
+..+-.|+|- |...+.||- .-...+-.-+ .|.+..+++-...|+. +++..|..+-.-.=|..+...
T Consensus 34 ~hd~TiGvef-g~r~~~id~--k~IKlqiwDt-aGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~-- 107 (216)
T KOG0098|consen 34 VHDLTIGVEF-GARMVTIDG--KQIKLQIWDT-AGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQH-- 107 (216)
T ss_pred cccceeeeee-ceeEEEEcC--ceEEEEEEec-CCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHh--
Confidence 3445567763 555555543 2333333344 3466777888888875 789999998888888887765
Q ss_pred CCCceEEEEEeCC-----eEEcCHHHHHHHHHh
Q 030843 142 TPNNVDIARVAPT-----YHLYTPSEVEAVINR 169 (170)
Q Consensus 142 ~~~~~~i~ii~~~-----~~~~~~~ei~~~~~~ 169 (170)
+..|+.|.+|.-+ -+.++.||-+++-++
T Consensus 108 ~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e 140 (216)
T KOG0098|consen 108 SNENMVIMLIGNKSDLEARREVSKEEGEAFARE 140 (216)
T ss_pred cCCCcEEEEEcchhhhhccccccHHHHHHHHHH
Confidence 5678888877654 888999999988653
No 75
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=34.35 E-value=1.6e+02 Score=21.38 Aligned_cols=58 Identities=24% Similarity=0.258 Sum_probs=40.1
Q ss_pred CeEEEECCCCceecccEEEeC-CCChhhhHHHHhhccC--------------------CCCHHHHHHHHHHHHHHhhcc
Q 030843 82 PSLYYTDPSGTFWQCNAKAIG-SGSEGADSSLQEQYNK--------------------DLTLQEAETIALSILKQVMEE 139 (170)
Q Consensus 82 ~~L~~id~~G~~~~~~~~a~G-~g~~~~~~~Le~~~~~--------------------~~s~~ea~~l~~~~l~~~~~~ 139 (170)
-.+..+-|.|+....+-...| ...+.+...|++..+. +.|++.|...|++-|......
T Consensus 72 ~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 72 VEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred ceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 456677788887777777777 5556666655544321 678899999999988776544
No 76
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=31.97 E-value=49 Score=20.76 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=16.5
Q ss_pred EeCC-eEEcCHHHHHHHHHhC
Q 030843 151 VAPT-YHLYTPSEVEAVINRL 170 (170)
Q Consensus 151 i~~~-~~~~~~~ei~~~~~~~ 170 (170)
|+.+ +..++++.|+.+++++
T Consensus 60 v~~~~~~~~~~e~i~~il~~~ 80 (80)
T cd03081 60 IDGEVHGRVDPEKFDALLAEL 80 (80)
T ss_pred ECCEEECCCCHHHHHHHHHcC
Confidence 4555 8899999999999875
No 77
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.41 E-value=98 Score=18.31 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=27.5
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhccc
Q 030843 106 EGADSSLQEQYNKDLTLQEAETIALSILKQVMEEK 140 (170)
Q Consensus 106 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d 140 (170)
+.+..-+.+.....||.-||+.++.+.|+.-...+
T Consensus 14 Q~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~ 48 (60)
T COG3140 14 QKAVERIQELMAEGMSSGEAIALVAQELRENHKGE 48 (60)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHhccc
Confidence 34455566666789999999999999999887654
No 78
>PF05801 DUF840: Lagovirus protein of unknown function (DUF840); InterPro: IPR008558 This family consists of several Lagovirus sequences of unknown function, largely from Oryctolagus cuniculus hemorrhagic disease virus.
Probab=31.28 E-value=90 Score=20.49 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=45.7
Q ss_pred cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEE-EEeC-CC
Q 030843 4 DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIA-GSDE-NG 81 (170)
Q Consensus 4 ~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iia-G~d~-~g 81 (170)
++.|+++.+|-.-=...+.+.-+-+.+.+.+.+|.-+..+.+.+ . +..|..|.-++. |-.- .+
T Consensus 2 sefigl~laga~vlsnallrrqelqlqkqalenglvlka~ql~r------------l---gfnp~evk~~ivng~~~n~~ 66 (114)
T PF05801_consen 2 SEFIGLGLAGASVLSNALLRRQELQLQKQALENGLVLKANQLSR------------L---GFNPNEVKNVIVNGNGFNSN 66 (114)
T ss_pred chhhccccchHHHHHHHHHHHHHHHHHHHHHhcCeeeehhhhhh------------c---CCCHhHhheeEEeCCCCccc
Confidence 46678888887666667777665566666667777666655442 2 678999877765 3221 23
Q ss_pred CeEEEECCCC
Q 030843 82 PSLYYTDPSG 91 (170)
Q Consensus 82 ~~L~~id~~G 91 (170)
..|-.+..+.
T Consensus 67 ~rlsnmhnda 76 (114)
T PF05801_consen 67 VRLSNMHNDA 76 (114)
T ss_pred eeeeccccch
Confidence 5555554443
No 79
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=30.54 E-value=46 Score=26.29 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=31.5
Q ss_pred CeEEEECCCCceecc---cEEEeCCCChhhhHHHHhhcc-CCCCHHHHHHHHHHH
Q 030843 82 PSLYYTDPSGTFWQC---NAKAIGSGSEGADSSLQEQYN-KDLTLQEAETIALSI 132 (170)
Q Consensus 82 ~~L~~id~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~~l~~~~ 132 (170)
-.+..+|..|.+... ..||.|+|+ +||..-+ =+++++|.-+++.++
T Consensus 109 ~K~I~~~~~G~v~~f~MNdkCAAGTG~-----FLe~~A~~L~i~leel~~~a~~~ 158 (262)
T TIGR02261 109 GRAIRMDERGKVEAYKMTSQCASGSGQ-----FLENIARYLGIAQDEIGSLSQQA 158 (262)
T ss_pred eEEEEEcCCCcEeeEEecCcccccccH-----HHHHHHHHhCCCHHHHHHHHhcC
Confidence 467888999998764 688889987 5555432 256777666655444
No 80
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=29.79 E-value=96 Score=17.96 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC
Q 030843 121 TLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 154 (170)
Q Consensus 121 s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~ 154 (170)
|++||++.+.+-|..-. +.+++.|+.+.
T Consensus 6 t~eeAi~~A~~~l~~~~------~~~~~eVi~~g 33 (52)
T PF14804_consen 6 TVEEAIEKALKELGVPR------EELEYEVIEEG 33 (52)
T ss_dssp SHHHHHHHHHHHTT--G------GGEEEEEEE--
T ss_pred CHHHHHHHHHHHhCCCh------HHEEEEEEEcC
Confidence 78999988887776543 56777777763
No 81
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=28.55 E-value=1.6e+02 Score=24.30 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=43.8
Q ss_pred EEEEEeCCCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHH
Q 030843 73 LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSIL 133 (170)
Q Consensus 73 iiaG~d~~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l 133 (170)
++..+ ..|-++..||.-+++.+...++.|.|...-...|= .+--|.||++++|.+.=
T Consensus 177 LLVNI-GSGVSIlkV~~~~~feRvgGsSlGGGTf~GL~~LL---Tg~~sfdE~LelA~~Gd 233 (371)
T KOG2201|consen 177 LLVNI-GSGVSILKVDGPDNFERVGGSSLGGGTFLGLGSLL---TGCKSFDELLELASRGD 233 (371)
T ss_pred EEEEc-CCCeEEEEEecCCceeEecccccCCcchhhhHhHh---cCCCCHHHHHHHHhcCC
Confidence 34444 24789999999999999999999999976655554 45568999999887643
No 82
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=28.05 E-value=55 Score=26.21 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=26.0
Q ss_pred EeCCC-ChhhhHHHHhhccC-CCCHHHHHHHHHHHHHHhh
Q 030843 100 AIGSG-SEGADSSLQEQYNK-DLTLQEAETIALSILKQVM 137 (170)
Q Consensus 100 a~G~g-~~~~~~~Le~~~~~-~~s~~ea~~l~~~~l~~~~ 137 (170)
..|.. -....+-|-+.|.+ ++|+|+|+.|...=.....
T Consensus 102 ~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLPR~iG~ 141 (298)
T COG1754 102 QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLPRVIGK 141 (298)
T ss_pred ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCchhhCC
Confidence 45655 55566667777765 6999999998765544444
No 83
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=26.72 E-value=53 Score=22.08 Aligned_cols=16 Identities=38% Similarity=0.931 Sum_probs=13.5
Q ss_pred CCCeEEEECCCCceec
Q 030843 80 NGPSLYYTDPSGTFWQ 95 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~ 95 (170)
++|+|+.+||.+....
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 4799999999987754
No 84
>smart00759 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=26.57 E-value=1.9e+02 Score=18.77 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=39.3
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Q 030843 12 SGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 60 (170)
Q Consensus 12 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 60 (170)
|--.+|++.+.+.+++.+.--+..--.+-+-..+++.+-..++.|..+.
T Consensus 39 se~aa~ameiA~qa~~mi~alRsiGahp~s~~Gi~dDllEnLq~~q~~m 87 (95)
T smart00759 39 SEKAADAMEIAEEAQQMIGALRSIGAHPKSGAGIADDLLENLKASQKGM 87 (95)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHhhhh
Confidence 3356899999999999888777655556678899999999998887754
No 85
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=25.97 E-value=1.8e+02 Score=20.87 Aligned_cols=51 Identities=25% Similarity=0.222 Sum_probs=39.4
Q ss_pred EECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhh
Q 030843 86 YTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVM 137 (170)
Q Consensus 86 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 137 (170)
.+| .|.+....+-..|-+...+.+-+=..+-...|++||.++.......+.
T Consensus 48 kv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 48 KVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344 788888899999987777777776666789999999999955555555
No 86
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=25.38 E-value=1.4e+02 Score=18.45 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHhhcc
Q 030843 119 DLTLQEAETIALSILKQVMEE 139 (170)
Q Consensus 119 ~~s~~ea~~l~~~~l~~~~~~ 139 (170)
.|+.+||+..+.+.|..+..+
T Consensus 5 G~~~~eA~~~l~~~l~~~~~~ 25 (83)
T PF01713_consen 5 GLTVEEALRALEEFLDEARQR 25 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHc
Confidence 579999999999999998865
No 87
>PHA03324 nuclear egress membrane protein UL34; Provisional
Probab=25.30 E-value=96 Score=23.86 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=39.7
Q ss_pred hCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC----CCeEEEECCCCceecccEEEeCC
Q 030843 36 YGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN----GPSLYYTDPSGTFWQCNAKAIGS 103 (170)
Q Consensus 36 ~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~----g~~L~~id~~G~~~~~~~~a~G~ 103 (170)
.|-++|++++.+.+.+.++.-.-+. +..-=|+++|++|+-.. +...+..|. -++.-...-++|-
T Consensus 49 dgp~fP~EYILrlM~swa~v~dpyl---RIQNTGvSVLfqG~Ftrp~~ap~~a~ta~~-nnViLaSt~Stgl 116 (274)
T PHA03324 49 DGPPIPAEYILEAMNSFLNIGEAWL---RIQNTGQAVIVAGCFTKNAHCGDQIWEAPA-PTISLAAAKSLWV 116 (274)
T ss_pred cCCCCcHHHHHHHHHhhhcCCCceE---EEecCceEEEEEeeecCCCCCCcceeecCC-CceEeeechhccc
Confidence 5778999999999998885443332 33456899999998642 233444433 3333334445554
No 88
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=25.10 E-value=2e+02 Score=23.02 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=38.7
Q ss_pred EEEEEEEEeCCCCeEEEECCCCceecccEEEeCCCChhhhHHH---HhhccCCCCHHHHHHHH
Q 030843 70 VSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSL---QEQYNKDLTLQEAETIA 129 (170)
Q Consensus 70 v~~iiaG~d~~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~L---e~~~~~~~s~~ea~~l~ 129 (170)
-.+|.||+= |+-+-..-|.|.++-..-.-.=+.+.+....| +..--..||++||++.+
T Consensus 97 y~FImaGyL--g~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~sv 157 (314)
T PF05113_consen 97 YDFIMAGYL--GAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKSV 157 (314)
T ss_pred ccEEeeccc--CCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHHh
Confidence 467888872 44444555788887655566667787777777 43334578999888765
No 89
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.50 E-value=80 Score=25.40 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=31.8
Q ss_pred EEEEeCCCCeEEEECCCCceecc---cEEEeCCCChhhhHHHHhhccC-CCCHHHHHHHH
Q 030843 74 IAGSDENGPSLYYTDPSGTFWQC---NAKAIGSGSEGADSSLQEQYNK-DLTLQEAETIA 129 (170)
Q Consensus 74 iaG~d~~g~~L~~id~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~~-~~s~~ea~~l~ 129 (170)
|+|.| -.+..+|..|.+... ..||.|+|+ +||..-+. +++++|.-+++
T Consensus 132 IGGQD---sK~I~~d~~G~v~dF~MNdkCAAGTGr-----FLE~~A~~Lgi~leel~~~a 183 (293)
T TIGR03192 132 MGGQD---CKAIHCDEKGKVTNFLMNDKCAAGTGR-----GMEVISDLMQIPIADLGPRS 183 (293)
T ss_pred eCCCc---eEEEEEcCCCcEeeeeecCcccccccH-----HHHHHHHHcCCCHHHHHHHH
Confidence 44554 467788999987764 678889987 66654332 56777654443
No 90
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=24.18 E-value=2.1e+02 Score=18.56 Aligned_cols=45 Identities=4% Similarity=0.044 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC---eEEcCHHHHHHHHHh
Q 030843 120 LTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINR 169 (170)
Q Consensus 120 ~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~---~~~~~~~ei~~~~~~ 169 (170)
.|.++..+.+.+.+.. +.+..|.|.+.+.+ +.+-+++|+...+.+
T Consensus 27 ~s~~~L~~~V~~~f~~-----l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~ 74 (87)
T cd06402 27 TSYEYLVEKVAAVFPS-----LRGKNFQLFWKDEEGDLVAFSSDEELVMALGS 74 (87)
T ss_pred cCHHHHHHHHHHHccc-----cCCCcEEEEEECCCCCEEeecCHHHHHHHHHc
Confidence 4556666655554432 24579999999998 999999998877654
No 91
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.02 E-value=62 Score=21.80 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=24.8
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHH
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVET 29 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 29 (170)
|+|-++.++.+.|..+|.-...+.++...
T Consensus 11 ~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 11 FKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 57889999999999999998888877654
No 92
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=23.98 E-value=1.3e+02 Score=19.28 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=15.7
Q ss_pred EEEEeCC---eEEcCHHHHHHH
Q 030843 148 IARVAPT---YHLYTPSEVEAV 166 (170)
Q Consensus 148 i~ii~~~---~~~~~~~ei~~~ 166 (170)
|.+.+++ |+.++|++|+.+
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~l 42 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARL 42 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHH
T ss_pred eEeeccCCCeEEecCHHHHHHH
Confidence 6788855 999999999864
No 93
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=23.62 E-value=1.1e+02 Score=19.85 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.5
Q ss_pred ceEEEEEeCC---eEEcCHHHHHHH
Q 030843 145 NVDIARVAPT---YHLYTPSEVEAV 166 (170)
Q Consensus 145 ~~~i~ii~~~---~~~~~~~ei~~~ 166 (170)
.=-|++.+++ |+.+++++|+..
T Consensus 18 ~~~I~W~~k~~g~Fkl~~~~~vA~l 42 (87)
T smart00413 18 GDIIRWTDRDGGEFKLVDPEEVARL 42 (87)
T ss_pred CCeEEeeCCCCCEEEecCHHHHHHH
Confidence 3357888975 999999999865
No 94
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=23.23 E-value=1e+02 Score=17.03 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHHhh
Q 030843 121 TLQEAETIALSILKQVM 137 (170)
Q Consensus 121 s~~ea~~l~~~~l~~~~ 137 (170)
|.+||++.++++|....
T Consensus 30 t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 30 TLEEALENAKEALELWL 46 (48)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 88889999888887653
No 95
>PRK11325 scaffold protein; Provisional
Probab=23.22 E-value=1.7e+02 Score=20.09 Aligned_cols=50 Identities=30% Similarity=0.298 Sum_probs=35.9
Q ss_pred EECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHH
Q 030843 86 YTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQ 135 (170)
Q Consensus 86 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~ 135 (170)
.+|+.|.+.+..+.+.|-....+-.-+=..+-...|++||..+..+.+..
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~ 95 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAE 95 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHH
Confidence 55556888888999888766555555545455688999999887765544
No 96
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=23.12 E-value=1.8e+02 Score=19.93 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=37.9
Q ss_pred EEECCC-CceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhc
Q 030843 85 YYTDPS-GTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 138 (170)
Q Consensus 85 ~~id~~-G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 138 (170)
..+|.. |.+.+.++.+.|-.-..+-.-+=...-.+.|++||..+..+-+.....
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 567877 888889999998766555554444445688999998776655544443
No 97
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.06 E-value=1.7e+02 Score=21.92 Aligned_cols=43 Identities=35% Similarity=0.535 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCCCCccceE-----------EEEEEEEeCCCCeEEEECCCCc
Q 030843 38 EPMTVESTTQALCDLALRFGEGDEESMSRPFGV-----------SLLIAGSDENGPSLYYTDPSGT 92 (170)
Q Consensus 38 ~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v-----------~~iiaG~d~~g~~L~~id~~G~ 92 (170)
.+++-..++..-.+.. ..||..+ +.+|-|+|. +.+|..||.|.
T Consensus 116 ~d~tGksl~~ik~ql~----------kg~PV~iw~T~~~~~s~H~v~itgyDk--~n~yynDpyG~ 169 (195)
T COG4990 116 VDLTGKSLSDIKGQLL----------KGRPVVIWVTNFHSYSIHSVLITGYDK--YNIYYNDPYGY 169 (195)
T ss_pred ccCcCCcHHHHHHHHh----------cCCcEEEEEecccccceeeeEeecccc--cceEecccccc
Confidence 5677777776655554 3456543 235668875 79999999954
No 98
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=22.74 E-value=1.1e+02 Score=22.91 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.7
Q ss_pred EEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHH
Q 030843 99 KAIGSGSEGADSSLQEQYNKDLTLQEAETIALSIL 133 (170)
Q Consensus 99 ~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l 133 (170)
.+.|+....+...+++...++++.++.++.|.+.|
T Consensus 151 ~~LGy~~~ea~~av~~~~~~~~~~e~lik~ALk~l 185 (188)
T PRK14606 151 VSLGYPEKQAREAVKHVYREGMKTSELIKEALKFL 185 (188)
T ss_pred HHcCCCHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 46788889999999887656888888877777665
No 99
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=22.69 E-value=1.2e+02 Score=22.52 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=17.2
Q ss_pred eEEEEEEEEeCCCCeEEEECCCCce
Q 030843 69 GVSLLIAGSDENGPSLYYTDPSGTF 93 (170)
Q Consensus 69 ~v~~iiaG~d~~g~~L~~id~~G~~ 93 (170)
|+.-|-.+||+..-..|..||-|-.
T Consensus 33 GvHWlA~Aw~P~s~t~YmFDPfGfs 57 (183)
T PF00770_consen 33 GVHWLAFAWDPRSRTFYMFDPFGFS 57 (183)
T ss_dssp -S-EEEEEEETTTTEEEEE-TT---
T ss_pred ceeEEEEEecCCcceEEEeCCCCCC
Confidence 5777888999998999999999865
No 100
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=22.54 E-value=60 Score=16.83 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=11.8
Q ss_pred eEEcCHHHHHHHHHhC
Q 030843 155 YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 ~~~~~~~ei~~~~~~~ 170 (170)
++=+.++||+++|+++
T Consensus 15 ~rGY~~~eVD~fLd~v 30 (34)
T TIGR03544 15 LRGYDAAEVDAFLDRV 30 (34)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4557888888888753
No 101
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=22.42 E-value=2.5e+02 Score=18.88 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=32.6
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHhh---ccc-CC-----CCceEEEEE--eCC--eEEc----CHHHHHHHHHh
Q 030843 110 SSLQEQYNKDLTLQEAETIALSILKQVM---EEK-VT-----PNNVDIARV--APT--YHLY----TPSEVEAVINR 169 (170)
Q Consensus 110 ~~Le~~~~~~~s~~ea~~l~~~~l~~~~---~~d-~~-----~~~~~i~ii--~~~--~~~~----~~~ei~~~~~~ 169 (170)
+++|+. ..-+|.|.+...+.+|++... ++. +. .++.-+.+. +++ ...+ +++||+.+|+.
T Consensus 9 ~~vDRi-aNALs~E~v~~aL~dAlR~~~s~~~s~ei~~~~~~~~~~y~~v~~~ekeg~~i~~g~lPt~~eVe~Fl~~ 84 (105)
T PF09702_consen 9 TYVDRI-ANALSPEAVEVALYDALRIFRSIIDSAEIDKSQVEEGRRYIAVIVKEKEGNYIIVGYLPTDEEVEDFLDD 84 (105)
T ss_pred cHHHHH-HhhcCHHHHHHHHHHHHHHHHHHhccccccccccccCccccceeeccCCCCEEecCCCCChHHHHHHHHH
Confidence 345543 446788887777777777654 321 11 122233344 333 3222 67889999864
No 102
>COG1647 Esterase/lipase [General function prediction only]
Probab=21.86 E-value=69 Score=24.90 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=17.0
Q ss_pred EEecchHHHHHHHHHHHHH
Q 030843 10 AMSGLIADARTLVEHARVE 28 (170)
Q Consensus 10 ~~sG~~~D~~~l~~~~~~~ 28 (170)
|++|.++|.+.|-+++++.
T Consensus 23 GFTGt~~Dvr~Lgr~L~e~ 41 (243)
T COG1647 23 GFTGTPRDVRMLGRYLNEN 41 (243)
T ss_pred ccCCCcHHHHHHHHHHHHC
Confidence 7899999999999999665
No 103
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.12 E-value=72 Score=20.87 Aligned_cols=14 Identities=50% Similarity=0.935 Sum_probs=11.3
Q ss_pred CCCeEEEECCCCce
Q 030843 80 NGPSLYYTDPSGTF 93 (170)
Q Consensus 80 ~g~~L~~id~~G~~ 93 (170)
++|+|+.+||.-..
T Consensus 24 d~PrL~yvdp~~~~ 37 (89)
T cd01262 24 NGPRLIYVDPVKKV 37 (89)
T ss_pred cCceEEEEcCCcCe
Confidence 48999999998443
No 104
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=20.99 E-value=3.7e+02 Score=20.19 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=39.2
Q ss_pred CChhhhHHHHhhc----cCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCCeEEcCHHHHHHHHH
Q 030843 104 GSEGADSSLQEQY----NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVIN 168 (170)
Q Consensus 104 g~~~~~~~Le~~~----~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~~~~~~~~ei~~~~~ 168 (170)
........|.+.+ .-+.|++.++++|+.+|+..... ..=||-+|-....-.+|.+|-+.++
T Consensus 60 n~~~h~~~L~~~~~~~~~G~~SLqN~Le~A~~~L~~~p~~----~srEIlvi~gSl~t~Dp~di~~ti~ 124 (193)
T PF04056_consen 60 NPQEHIEALKKLRKLEPSGEPSLQNGLEMARSSLKHMPSH----GSREILVIFGSLTTCDPGDIHETIE 124 (193)
T ss_pred CHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHhhCccc----cceEEEEEEeecccCCchhHHHHHH
Confidence 3444556666665 23789999999999999877532 2336666654455566666655544
No 105
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.80 E-value=1.5e+02 Score=15.64 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=12.4
Q ss_pred eEEcCHHHHHHHHHh
Q 030843 155 YHLYTPSEVEAVINR 169 (170)
Q Consensus 155 ~~~~~~~ei~~~~~~ 169 (170)
...++.+|++.++++
T Consensus 35 ~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 35 HYRIPREDVDEYLEQ 49 (49)
T ss_pred eEEEeHHHHHHHHhC
Confidence 667899999998864
No 106
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=20.70 E-value=86 Score=26.59 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=30.2
Q ss_pred CeEEEECCCCceecc---cEEEeCCCChhhhHHHHhhcc-CCCCHHHHHHHHHH
Q 030843 82 PSLYYTDPSGTFWQC---NAKAIGSGSEGADSSLQEQYN-KDLTLQEAETIALS 131 (170)
Q Consensus 82 ~~L~~id~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~~l~~~ 131 (170)
-....+|..|.+... ..||.|+|+ +||..-+ =+++++|.-+++.+
T Consensus 279 sK~I~ld~~G~V~dF~MNDKCAAGTGr-----FLE~mA~~Lgi~leEl~~lA~~ 327 (432)
T TIGR02259 279 TKGIQIDDHGIVENFQMNDRCAAGCGR-----YLGYIADEMNMGLHELGPLAMK 327 (432)
T ss_pred eEEEEEcCCCcEeeeeecCcccccchH-----HHHHHHHHcCCCHHHHHHHHhc
Confidence 468889999987753 678889987 5554432 25676665555444
No 107
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=20.31 E-value=2.9e+02 Score=18.70 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 030843 14 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 53 (170)
Q Consensus 14 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~ 53 (170)
++.|--.+++++ +.|..+|+..+++..+.+.+...+
T Consensus 38 LT~~Hw~vI~~l----R~~y~e~~~~P~~R~l~K~~~~~~ 73 (108)
T TIGR03342 38 LTEAHWEVINFL----RDFYAEYNISPAVRMLVKAMGKKL 73 (108)
T ss_pred CCHHHHHHHHHH----HHHHHHHCCCCcHHHHHHHHHHHh
Confidence 344555677766 557777899999999998877644
No 108
>PF07277 SapC: SapC; InterPro: IPR010836 This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance [].
Probab=20.16 E-value=4e+02 Score=20.28 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=37.7
Q ss_pred EEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEE-------------EEeCC-eEEcCHHH
Q 030843 98 AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIA-------------RVAPT-YHLYTPSE 162 (170)
Q Consensus 98 ~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~-------------ii~~~-~~~~~~~e 162 (170)
+..-|.-+++....++-. -..++........++...+-++ ....++|. +|+.+ .+.|+++.
T Consensus 120 Fd~~G~~T~~l~~~~~~L----~~~~~~~~~T~~f~~~L~~~~Ll~~~~l~v~~~~g~~~~l~G~~~Vde~kL~~L~de~ 195 (221)
T PF07277_consen 120 FDEDGEPTEYLQQVLNFL----QQYQQGRQQTQAFIKALAELGLLEPWTLTVTLDDGEKHNLNGFYTVDEEKLNALSDEA 195 (221)
T ss_pred cCCCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCcccEEEEEeCCCCeeeccCceEECHHHHhcCCHHH
Confidence 345666665555554432 1345556666666666666554 55555444 45555 66777777
Q ss_pred HHHHHH
Q 030843 163 VEAVIN 168 (170)
Q Consensus 163 i~~~~~ 168 (170)
+.++.+
T Consensus 196 l~~L~~ 201 (221)
T PF07277_consen 196 LLELHK 201 (221)
T ss_pred HHHHHH
Confidence 666543
Done!