Query 030843
Match_columns 170
No_of_seqs 112 out of 1065
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 08:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_B 20S proteasome; cell cy 100.0 1.4E-42 4.9E-47 266.3 22.0 167 1-170 65-232 (233)
2 1ryp_A 20S proteasome; multica 100.0 1.2E-42 4.2E-47 268.3 19.4 167 1-170 64-239 (243)
3 1yar_A Proteasome alpha subuni 100.0 1.2E-41 3.9E-46 261.3 20.3 164 1-167 68-233 (233)
4 1j2q_H Proteasome beta subunit 100.0 2E-41 6.7E-46 254.8 21.0 163 1-170 35-200 (202)
5 3h4p_a Proteasome subunit beta 100.0 1.6E-41 5.5E-46 258.4 19.6 163 1-170 36-202 (219)
6 1iru_A 20S proteasome; cell cy 100.0 2.2E-41 7.4E-46 261.7 20.3 167 1-170 70-242 (246)
7 1iru_E 20S proteasome; cell cy 100.0 2.8E-41 9.7E-46 260.4 19.4 167 1-170 68-241 (241)
8 1iru_F 20S proteasome; cell cy 100.0 2.2E-41 7.4E-46 264.0 18.4 167 1-170 64-236 (263)
9 3h4p_A Proteasome subunit alph 100.0 7.6E-42 2.6E-46 266.6 15.8 166 1-170 72-240 (264)
10 1ryp_C 20S proteasome; multica 100.0 7.3E-41 2.5E-45 258.5 20.6 167 1-170 66-241 (244)
11 1ryp_D 20S proteasome; multica 100.0 1.5E-40 5E-45 256.4 22.0 165 1-170 63-234 (241)
12 1yar_H Proteasome beta subunit 100.0 1.2E-40 4E-45 253.3 20.9 162 1-170 43-207 (217)
13 1ryp_E 20S proteasome; multica 100.0 4.9E-41 1.7E-45 259.2 19.0 167 1-170 60-235 (242)
14 1j2p_A Alpha-ring, proteasome 100.0 1.3E-40 4.5E-45 257.4 21.1 165 1-169 68-235 (246)
15 1iru_C 20S proteasome; cell cy 100.0 1.9E-40 6.7E-45 258.4 21.1 167 1-170 66-240 (261)
16 1ryp_F 20S proteasome; multica 100.0 3.3E-41 1.1E-45 258.8 15.8 163 1-167 63-233 (233)
17 1iru_L 20S proteasome; cell cy 100.0 1.3E-40 4.4E-45 250.7 17.5 163 1-170 35-199 (204)
18 1iru_D 20S proteasome; cell cy 100.0 2.3E-40 7.9E-45 256.3 19.2 165 1-170 63-232 (248)
19 3mi0_A Proteasome subunit alph 100.0 3.5E-40 1.2E-44 254.9 19.6 165 1-170 54-237 (248)
20 1iru_G 20S proteasome; cell cy 100.0 4.8E-40 1.6E-44 255.3 19.9 166 1-169 67-238 (254)
21 1ryp_B 20S proteasome; multica 100.0 1.4E-39 4.8E-44 252.1 21.8 167 1-170 65-250 (250)
22 1ryp_G 20S proteasome; multica 100.0 1.5E-39 5.2E-44 251.1 21.0 165 1-168 64-236 (244)
23 1ryp_L 20S proteasome; multica 100.0 6.9E-40 2.4E-44 248.1 17.8 162 1-169 35-199 (212)
24 3nzj_F Proteasome component C1 100.0 4.2E-39 1.4E-43 253.5 21.5 163 1-166 68-239 (288)
25 1q5q_H Proteasome beta-type su 100.0 5.4E-39 1.9E-43 246.8 19.6 166 1-170 35-217 (235)
26 1iru_H 20S proteasome; cell cy 100.0 2.3E-39 8E-44 244.0 16.9 161 1-169 35-200 (205)
27 1ryp_K 20S proteasome; multica 100.0 1.7E-38 5.7E-43 238.1 19.3 155 1-160 36-194 (198)
28 3unf_H Proteasome subunit beta 100.0 9.5E-39 3.3E-43 245.1 17.5 156 1-164 35-192 (234)
29 3nzj_K Proteasome component PR 100.0 9.7E-39 3.3E-43 251.3 17.9 162 1-169 110-274 (287)
30 1iru_N 20S proteasome; cell cy 100.0 2.3E-39 7.7E-44 246.4 13.5 160 1-165 43-207 (219)
31 1q5q_A Proteasome alpha-type s 100.0 2.4E-38 8E-43 246.3 17.2 165 1-170 54-235 (259)
32 1q5r_H Proteasome beta-type su 100.0 6.1E-38 2.1E-42 247.5 19.6 166 1-170 100-282 (294)
33 1ryp_N 20S proteasome; multica 100.0 1E-38 3.6E-43 244.9 11.0 161 1-166 43-217 (233)
34 1iru_M 20S proteasome; cell cy 100.0 5.2E-37 1.8E-41 232.4 19.6 150 1-157 44-205 (213)
35 2jay_A Proteasome; hydrolase; 100.0 3.9E-37 1.3E-41 242.7 18.2 166 1-170 92-274 (291)
36 1ryp_I 20S proteasome; multica 100.0 1.3E-36 4.4E-41 231.7 19.2 152 1-160 35-189 (222)
37 1iru_K 20S proteasome; cell cy 100.0 1.3E-36 4.3E-41 228.4 18.8 155 1-160 36-193 (201)
38 3unf_N Proteasome subunit beta 100.0 1.8E-37 6E-42 232.7 13.7 158 1-168 35-198 (199)
39 1ryp_M 20S proteasome; multica 100.0 2.3E-36 7.9E-41 230.3 19.9 150 1-157 44-214 (222)
40 1iru_I 20S proteasome; cell cy 100.0 2.2E-36 7.5E-41 232.1 19.2 153 1-161 35-189 (234)
41 3nzj_H Proteasome component PU 100.0 2.5E-36 8.7E-41 234.8 19.2 151 1-159 64-217 (261)
42 1g0u_M Proteasome component PR 100.0 1.9E-37 6.4E-42 242.1 12.0 161 1-166 76-250 (266)
43 1iru_J 20S proteasome; cell cy 100.0 3.5E-36 1.2E-40 226.6 18.3 147 1-154 43-193 (205)
44 1ryp_J 20S proteasome; multica 100.0 1.3E-35 4.6E-40 223.3 20.2 146 1-154 43-192 (204)
45 1ryp_H 20S proteasome; multica 100.0 1.1E-35 3.6E-40 224.1 19.4 145 1-154 44-190 (205)
46 1m4y_A ATP-dependent protease 100.0 5.8E-28 2E-32 177.0 13.8 132 1-151 35-171 (171)
47 2z3b_A ATP-dependent protease 100.0 6.3E-28 2.2E-32 178.2 13.2 133 1-152 41-180 (180)
48 1g3k_A ATP-dependent protease 100.0 1.1E-27 3.6E-32 176.1 13.0 133 1-152 35-173 (174)
49 2hc5_A ORF 99, hypothetical pr 80.8 2.3 7.8E-05 28.3 4.2 48 123-170 41-97 (117)
50 1vd2_A Protein kinase C, IOTA 46.3 41 0.0014 21.0 4.7 47 117-168 23-72 (89)
51 4eo3_A Bacterioferritin comigr 41.8 5.3 0.00018 31.1 -0.1 72 82-153 103-193 (322)
52 3jtz_A Integrase; four strande 39.2 15 0.0005 22.9 1.8 56 77-138 21-77 (88)
53 3fpw_A HBPS, extracellular HAE 30.4 1.3E+02 0.0045 21.5 5.8 40 117-159 62-106 (192)
54 2lrg_A Uncharacterized protein 30.2 66 0.0022 20.8 3.7 33 64-98 19-52 (126)
55 1qzv_F Plant photosystem I: su 30.1 1.3E+02 0.0043 20.3 5.4 19 66-85 54-72 (154)
56 4gof_A Small glutamine-rich te 29.9 42 0.0014 18.8 2.4 33 108-140 9-44 (52)
57 1yx3_A Hypothetical protein DS 26.2 1.5E+02 0.0052 19.9 5.5 36 14-53 62-97 (132)
58 1sau_A Sulfite reductase, desu 25.8 1.4E+02 0.0049 19.5 5.7 36 14-53 46-81 (115)
59 2a2l_A Unknown; structural gen 25.3 1.1E+02 0.0038 20.6 4.5 34 118-154 10-43 (145)
60 1ixs_A Holliday junction DNA h 25.0 38 0.0013 19.5 1.7 32 100-131 26-59 (62)
61 2kxe_A DNA polymerase II small 24.8 62 0.0021 19.1 2.6 25 106-130 20-45 (75)
62 3fau_A NEDD4-binding protein 2 23.7 1.2E+02 0.0042 18.0 4.1 36 119-154 7-43 (82)
63 3ju0_A Phage integrase; four s 23.3 29 0.00099 22.4 1.1 56 77-138 21-77 (108)
64 2w42_A PIWI, putative uncharac 23.0 2E+02 0.0068 23.1 6.3 46 122-168 223-270 (427)
65 2i7n_A Pantothenate kinase 1; 22.2 68 0.0023 25.4 3.3 58 73-134 178-235 (360)
66 1yo5_C SAM pointed domain cont 21.3 1E+02 0.0035 19.5 3.4 19 148-166 31-52 (97)
67 2gdt_A Leader protein; P65 hom 21.3 75 0.0026 20.5 2.7 19 119-137 21-39 (116)
68 2lxb_A Small glutamine-rich te 20.1 76 0.0026 19.1 2.4 33 108-140 14-49 (74)
No 1
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.4e-42 Score=266.34 Aligned_cols=167 Identities=32% Similarity=0.549 Sum_probs=162.6
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++++|.|+++. +.|||+|++||||||.+
T Consensus 65 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~---~~rP~~v~~lvaG~D~~ 141 (233)
T 1iru_B 65 EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG---GVRPFGVSLLICGWNEG 141 (233)
T ss_dssp EESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSB---TBCCCSEEEEEEEECSS
T ss_pred EEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC---CCCCcEEEEEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999999999999987 88999999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC-eEEcC
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYT 159 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~-~~~~~ 159 (170)
||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++|.++++++|++|+++ +++++
T Consensus 142 gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g~~~l~ 221 (233)
T 1iru_B 142 RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLT 221 (233)
T ss_dssp SEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTEEEECC
T ss_pred CCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999 99999
Q ss_pred HHHHHHHHHhC
Q 030843 160 PSEVEAVINRL 170 (170)
Q Consensus 160 ~~ei~~~~~~~ 170 (170)
++||++++++|
T Consensus 222 ~~ei~~~~~~~ 232 (233)
T 1iru_B 222 PTEVKDYLAAI 232 (233)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.2e-42 Score=268.28 Aligned_cols=167 Identities=23% Similarity=0.454 Sum_probs=161.8
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|+++|+.+|++.++++++.+++.|+++++++++++.+++++++++|.|+++. +.|||+|++||||||+
T Consensus 64 ~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~---~~rP~~v~~lvaG~D~~ 140 (243)
T 1ryp_A 64 FCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRA---YMRPLGVILTFVSVDEE 140 (243)
T ss_dssp EECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBT---TSCCCSCEEEEEEEETT
T ss_pred EEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC---CccccceEEEEEEEcCC
Confidence 589999999999999999999999999999999999999999999999999999999987 7899999999999997
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC-------CCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEe
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK-------DLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 152 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~ 152 (170)
+||+||.+||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+||.++++++|++|+
T Consensus 141 ~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~ 220 (243)
T 1ryp_A 141 LGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVAT 220 (243)
T ss_dssp TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEE
Confidence 689999999999999999999999999999999999999 9999999999999999999999889999999999
Q ss_pred CC-eEEcCHHHHHHHHHhC
Q 030843 153 PT-YHLYTPSEVEAVINRL 170 (170)
Q Consensus 153 ~~-~~~~~~~ei~~~~~~~ 170 (170)
++ +++++++||+++++++
T Consensus 221 ~~g~~~l~~~ei~~~~~~~ 239 (243)
T 1ryp_A 221 KDKFFTLSAENIEERLVAI 239 (243)
T ss_dssp TTEEEECCHHHHHHHHHHH
T ss_pred CCCeEECCHHHHHHHHHHh
Confidence 99 9999999999998763
No 3
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.2e-41 Score=261.32 Aligned_cols=164 Identities=35% Similarity=0.589 Sum_probs=159.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.++++++++++.|+++. +.|||++++||||||++
T Consensus 68 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~---~~rp~~v~~lvaG~D~~ 144 (233)
T 1yar_A 68 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG---GVRPYGVSLIFAGIDQI 144 (233)
T ss_dssp EEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBT---TBCCCCEEEEEEEECSS
T ss_pred EEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC---CcCcceEEEEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999999999999987 88999999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC--eEEc
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLY 158 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~--~~~~ 158 (170)
||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++|+++++++|++|+++ ++++
T Consensus 145 gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~ 224 (233)
T 1yar_A 145 GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIY 224 (233)
T ss_dssp CEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEEC
T ss_pred CCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999998 9999
Q ss_pred CHHHHHHHH
Q 030843 159 TPSEVEAVI 167 (170)
Q Consensus 159 ~~~ei~~~~ 167 (170)
+++||+++|
T Consensus 225 ~~~ei~~~l 233 (233)
T 1yar_A 225 DQEEVKKFL 233 (233)
T ss_dssp CHHHHHTTC
T ss_pred CHHHHHhhC
Confidence 999998764
No 4
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=2e-41 Score=254.85 Aligned_cols=163 Identities=24% Similarity=0.424 Sum_probs=156.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++.++.+ + .|||++++|+||||.+
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~--r-----~rp~~~~~lvaG~D~~ 107 (202)
T 1j2q_H 35 YQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSY--R-----YFPYLVQLLIGGIDSE 107 (202)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT--T-----TSCCCEEEEEEEEETT
T ss_pred EEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--C-----CCCceEEEEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999999999553 2 4899999999999998
Q ss_pred CCeEEEECCCCceeccc-EEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEE
Q 030843 81 GPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 157 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~ 157 (170)
||+||.+||+|++.+++ ++|+|+|++.++++||+.|+++||++||++++++||..+.++|. ++++++|++|+++ +++
T Consensus 108 gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 187 (202)
T 1j2q_H 108 GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQ 187 (202)
T ss_dssp EEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred CCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEE
Confidence 99999999999999999 99999999999999999999999999999999999999999997 8999999999999 999
Q ss_pred cCHHHHHHHHHhC
Q 030843 158 YTPSEVEAVINRL 170 (170)
Q Consensus 158 ~~~~ei~~~~~~~ 170 (170)
++++||+++++++
T Consensus 188 l~~~ei~~~~~~~ 200 (202)
T 1j2q_H 188 YSPEEVEQILAKF 200 (202)
T ss_dssp CHHHHHHHHGGGT
T ss_pred eCHHHHHHHHHHh
Confidence 9999999999875
No 5
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.6e-41 Score=258.37 Aligned_cols=163 Identities=25% Similarity=0.419 Sum_probs=156.5
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++||+|+++|+.+|++.++++++.+++.|+++++++++++.++++++++++.| + .|||+|++||||||+
T Consensus 36 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~--~-----~~P~~v~~lvaG~D~~ 108 (219)
T 3h4p_a 36 YKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSS--R-----MFPFLTQIIIGGYDLL 108 (219)
T ss_dssp EEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHT--T-----TTTCCCCCEEEEEETT
T ss_pred EEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh--c-----CCCceEEEEEEEEeCC
Confidence 58999999999999999999999999999999999999999999999999999766 2 389999999999998
Q ss_pred CCCeEEEECCCCceeccc-EEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eE
Q 030843 80 NGPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YH 156 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~ 156 (170)
+||+||.+||+|++.+++ +.|+|+|++.++++||+.|+++||++||++++++||..+.++|. ++++++|++|+++ ++
T Consensus 109 ~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~ 188 (219)
T 3h4p_a 109 EGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVK 188 (219)
T ss_dssp TEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEE
T ss_pred CCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeE
Confidence 689999999999999999 99999999999999999999999999999999999999999997 8999999999999 99
Q ss_pred EcCHHHHHHHHHhC
Q 030843 157 LYTPSEVEAVINRL 170 (170)
Q Consensus 157 ~~~~~ei~~~~~~~ 170 (170)
+++++||+++|+++
T Consensus 189 ~l~~~ei~~~l~~~ 202 (219)
T 3h4p_a 189 IFEDEEIEKILDSM 202 (219)
T ss_dssp ECCHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHh
Confidence 99999999999875
No 6
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2.2e-41 Score=261.73 Aligned_cols=167 Identities=29% Similarity=0.578 Sum_probs=161.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|+++|..+|++.+.++++.+++.|+.+++++++++.+++++++++|.|+++. +.|||+|++||||||+
T Consensus 70 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~---~~rp~~v~~lvaG~D~~ 146 (246)
T 1iru_A 70 FKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNA---EMRPLGCCMILIGIDEE 146 (246)
T ss_dssp EESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBS---SBCCCSEEEEEEEEETT
T ss_pred EEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCC---CCCCcceEEEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999999999999887 7899999999999997
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC--CCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC---
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--- 154 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~--- 154 (170)
+||+||.+||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+||.++++++|++|+++
T Consensus 147 ~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~ 226 (246)
T 1iru_A 147 QGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPK 226 (246)
T ss_dssp TEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEE
T ss_pred CCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCe
Confidence 689999999999999999999999999999999999999 999999999999999999999988999999999999
Q ss_pred eEEcCHHHHHHHHHhC
Q 030843 155 YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 ~~~~~~~ei~~~~~~~ 170 (170)
+++++++||+++++++
T Consensus 227 ~~~l~~~ei~~~~~~~ 242 (246)
T 1iru_A 227 FRILTEAEIDAHLVAL 242 (246)
T ss_dssp EEECCHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHh
Confidence 7999999999998763
No 7
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=2.8e-41 Score=260.35 Aligned_cols=167 Identities=63% Similarity=0.994 Sum_probs=161.0
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCC-----CccceEEEEEE
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESM-----SRPFGVSLLIA 75 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~-----~rP~~v~~iia 75 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++++|.|+++. + .|||+|++|||
T Consensus 68 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~---~~~~l~~rp~~v~~lva 144 (241)
T 1iru_E 68 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED---ADPGAMSRPFGVALLFG 144 (241)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTT---CCSSCBSSCCCEEEEEE
T ss_pred EEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---cccccccccceEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999986 6 79999999999
Q ss_pred EEeCCCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC-
Q 030843 76 GSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT- 154 (170)
Q Consensus 76 G~d~~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~- 154 (170)
|||.+||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++..++++++|++|+++
T Consensus 145 G~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~ 224 (241)
T 1iru_E 145 GVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQ 224 (241)
T ss_dssp EEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSS
T ss_pred EEeCCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC
Confidence 9998789999999999999999999999999999999999999999999999999999999999558999999999999
Q ss_pred -eEEcCHHHHHHHHHhC
Q 030843 155 -YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 -~~~~~~~ei~~~~~~~ 170 (170)
+++++++||++++++|
T Consensus 225 ~~~~l~~~ei~~~~~~~ 241 (241)
T 1iru_E 225 NFHMFTKEELEEVIKDI 241 (241)
T ss_dssp CCEECCHHHHHHHHTTC
T ss_pred CeEECCHHHHHHHHHhC
Confidence 8999999999999875
No 8
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2.2e-41 Score=264.02 Aligned_cols=167 Identities=31% Similarity=0.555 Sum_probs=161.5
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++||+|++||+.+|++.+.++++.+++.|+.+++++++++.+++++++++|.|+++. +.|||+|++||||||.+
T Consensus 64 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~---~~RP~~v~~lvaG~D~~ 140 (263)
T 1iru_F 64 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY---GRRPYGVGLLIAGYDDM 140 (263)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBT---TCCCCCEEEEEEEEETT
T ss_pred EEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccc---ccccceEEEEEEEEcCC
Confidence 589999999999999999999999999999999999999999999999999999999887 88999999999999998
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC--CCCHHHHHHHHHHHHHHhhccc--CCCCceEEEEEeCC--
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEK--VTPNNVDIARVAPT-- 154 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d--~~~~~~~i~ii~~~-- 154 (170)
||+||.+||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+|| .++++++|++|+++
T Consensus 141 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~ 220 (263)
T 1iru_F 141 GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLE 220 (263)
T ss_dssp EEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEE
T ss_pred CCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCC
Confidence 99999999999999999999999999999999999998 9999999999999999999998 48999999999999
Q ss_pred eEEcCHHHHHHHHHhC
Q 030843 155 YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 ~~~~~~~ei~~~~~~~ 170 (170)
+++++++||+++++++
T Consensus 221 ~~~l~~~ei~~~~~~~ 236 (263)
T 1iru_F 221 FTIYDDDDVSPFLEGL 236 (263)
T ss_dssp EEEECSGGGHHHHTTC
T ss_pred eEECCHHHHHHHHHHH
Confidence 9999999999998764
No 9
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.6e-42 Score=266.59 Aligned_cols=166 Identities=38% Similarity=0.681 Sum_probs=160.6
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++||+|+++|+.+|++.++++++.+++.|+++++++++++.+++++++++|.|+++. +.|||+|++||||||.+
T Consensus 72 ~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~---~~rP~~v~~lvaG~D~~ 148 (264)
T 3h4p_A 72 FQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHG---GVRPFGVSLLIAGIDKN 148 (264)
T ss_dssp EEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBS---SCCCCSEEEEEEEEETT
T ss_pred EEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhcc---CCCCeeEEEEEEEEeCC
Confidence 589999999999999999999999999999999999999999999999999999999987 88999999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC---eEE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHL 157 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~---~~~ 157 (170)
||+||.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||..+.++ .++++++|++|+++ |++
T Consensus 149 gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~ 227 (264)
T 3h4p_A 149 EARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKK 227 (264)
T ss_dssp EEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEE
T ss_pred cCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999998 89999999999985 999
Q ss_pred cCHHHHHHHHHhC
Q 030843 158 YTPSEVEAVINRL 170 (170)
Q Consensus 158 ~~~~ei~~~~~~~ 170 (170)
++++||+++++++
T Consensus 228 l~~~ei~~~~~~~ 240 (264)
T 3h4p_A 228 IPVEEIKKLIEKV 240 (264)
T ss_dssp CCTTTTGGGTTTT
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988764
No 10
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=7.3e-41 Score=258.45 Aligned_cols=167 Identities=29% Similarity=0.534 Sum_probs=160.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEe-C
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-E 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d-~ 79 (170)
|+|++|++|++||..+|++.++++++.+++.|+.+++++++++.+++++++++|.|+++. +.|||++++|||||| .
T Consensus 66 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rp~~v~~lvaG~D~~ 142 (244)
T 1ryp_C 66 YKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG---GLRPFGVSFIYAGYDDR 142 (244)
T ss_dssp EESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBS---SCCCCCEEEEEEEEETT
T ss_pred EEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC---CccceEEEEEEEEEcCC
Confidence 579999999999999999999999999999999999999999999999999999999987 889999999999999 6
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcc-cCCCCceEEEEEe--CC--
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARVA--PT-- 154 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~-d~~~~~~~i~ii~--~~-- 154 (170)
+||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+| ++++++++|++|+ ++
T Consensus 143 ~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~ 222 (244)
T 1ryp_C 143 YGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDG 222 (244)
T ss_dssp TEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSS
T ss_pred CCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCC
Confidence 789999999999999999999999999999999999999999999999999999999999 5689999999999 77
Q ss_pred ---eEEcCHHHHHHHHHhC
Q 030843 155 ---YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 ---~~~~~~~ei~~~~~~~ 170 (170)
+++++++||++++++|
T Consensus 223 ~~~~~~l~~~ei~~~~~~~ 241 (244)
T 1ryp_C 223 EVYQKIFKPQEIKDILVKT 241 (244)
T ss_dssp SCEEEECCHHHHHHHHHHH
T ss_pred ceeEEECCHHHHHHHHHHh
Confidence 6899999999998764
No 11
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.5e-40 Score=256.35 Aligned_cols=165 Identities=35% Similarity=0.579 Sum_probs=159.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|+++|..+|++.+.++++.+++.|+.+++++++++.++++++++++.|+++. +.|||+|++||||||.
T Consensus 63 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rP~~v~~lvaG~D~~ 139 (241)
T 1ryp_D 63 SKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG---GVRPFGVSTLIAGFDPR 139 (241)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSST---TBCCCSEEEEEEECCTT
T ss_pred EEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCC---CCCCcceeeEEEEEcCC
Confidence 589999999999999999999999999999999999999999999999999999999987 8899999999999998
Q ss_pred -CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhc---cCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC-
Q 030843 80 -NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQY---NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT- 154 (170)
Q Consensus 80 -~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~---~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~- 154 (170)
+||+||.+||+|++.+++++|+|+|++.++++||+.| +++||++||++++++||..+.+ .++++++|++|+++
T Consensus 140 ~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~ 217 (241)
T 1ryp_D 140 DDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDS 217 (241)
T ss_dssp CCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTT
T ss_pred CCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCC
Confidence 7899999999999999999999999999999999999 8999999999999999999997 78999999999998
Q ss_pred -eEEcCHHHHHHHHHhC
Q 030843 155 -YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 -~~~~~~~ei~~~~~~~ 170 (170)
+++++++||+++++++
T Consensus 218 ~~~~l~~~ei~~~~~~~ 234 (241)
T 1ryp_D 218 DIVALSSEEINQYVTQI 234 (241)
T ss_dssp EEEECCHHHHHHHHHHH
T ss_pred cEEECCHHHHHHHHHHH
Confidence 9999999999998753
No 12
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.2e-40 Score=253.25 Aligned_cols=162 Identities=23% Similarity=0.393 Sum_probs=154.8
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++.++.+ + .|||++++|||||| +
T Consensus 43 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~--r-----~rp~~v~~lvaG~D-~ 114 (217)
T 1yar_H 43 FQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQV--K-----YMPYMVQLLVGGID-T 114 (217)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT--T-----TSCCCEEEEEEEES-S
T ss_pred EEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc--C-----CCCceEEEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999999999553 2 48999999999999 8
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeC-C-eEE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAP-T-YHL 157 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~-~-~~~ 157 (170)
||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+||. ++++++|++|++ + +++
T Consensus 115 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~ 194 (217)
T 1yar_H 115 APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQ 194 (217)
T ss_dssp SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEE
T ss_pred CCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999997 899999999999 6 999
Q ss_pred cCHHHHHHHHHhC
Q 030843 158 YTPSEVEAVINRL 170 (170)
Q Consensus 158 ~~~~ei~~~~~~~ 170 (170)
++++||+++++++
T Consensus 195 ~~~~ei~~~~~~~ 207 (217)
T 1yar_H 195 LPTDQIESRIRKL 207 (217)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9999999998753
No 13
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=4.9e-41 Score=259.15 Aligned_cols=167 Identities=54% Similarity=0.913 Sum_probs=160.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCC------CccceEEEEE
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESM------SRPFGVSLLI 74 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~------~rP~~v~~ii 74 (170)
|+|++|++|++||..+|++.++++++.+++.|+.+++++++++.+++++++++|.|+++. + .|||+|++||
T Consensus 60 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~~~~l~~RP~~v~~lv 136 (242)
T 1ryp_E 60 VEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGA---SGEERLMSRPFGVALLI 136 (242)
T ss_dssp EEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSC---TTSCCCBSSCCSEEEEE
T ss_pred EEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc---CcccccccCcceEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999886 6 8999999999
Q ss_pred EEEe-CCCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeC
Q 030843 75 AGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP 153 (170)
Q Consensus 75 aG~d-~~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~ 153 (170)
|||| .+||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+|+.++++++|++|++
T Consensus 137 aG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~ 216 (242)
T 1ryp_E 137 AGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITK 216 (242)
T ss_dssp EEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEET
T ss_pred EEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEC
Confidence 9999 568999999999999999999999999999999999999999999999999999999999966899999999999
Q ss_pred C--eEEcCHHHHHHHHHhC
Q 030843 154 T--YHLYTPSEVEAVINRL 170 (170)
Q Consensus 154 ~--~~~~~~~ei~~~~~~~ 170 (170)
+ +++++++||+++++++
T Consensus 217 ~~~~~~~~~~ei~~~~~~~ 235 (242)
T 1ryp_E 217 QDGFKIYDNEKTAELIKEL 235 (242)
T ss_dssp TTEEEECCHHHHHHHHHHH
T ss_pred CCCeEECCHHHHHHHHHHH
Confidence 9 8999999999998753
No 14
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.3e-40 Score=257.36 Aligned_cols=165 Identities=37% Similarity=0.675 Sum_probs=159.2
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|+++|..+|++.+.++++.+++.|+.+++++++++.+++++++++|.|+++. +.|||++++|||||| +
T Consensus 68 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~---~~rp~~v~~lvaG~D-~ 143 (246)
T 1j2p_A 68 YKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG---GVRPFGVSLLIAGVN-E 143 (246)
T ss_dssp EECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBT---TBCCCCEEEEEEEES-S
T ss_pred EEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CcccccEEEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999999999999998 889999999999999 8
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEe-CC--eEE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA-PT--YHL 157 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~-~~--~~~ 157 (170)
||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++..++++++|++|+ ++ +++
T Consensus 144 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~ 223 (246)
T 1j2p_A 144 VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKE 223 (246)
T ss_dssp SEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEE
T ss_pred CCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999984489999999999 65 999
Q ss_pred cCHHHHHHHHHh
Q 030843 158 YTPSEVEAVINR 169 (170)
Q Consensus 158 ~~~~ei~~~~~~ 169 (170)
++++||++++++
T Consensus 224 l~~~ei~~~~~~ 235 (246)
T 1j2p_A 224 VSPEELKPYVER 235 (246)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999875
No 15
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.9e-40 Score=258.40 Aligned_cols=167 Identities=32% Similarity=0.574 Sum_probs=160.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++||+|++||+.+|++.++++++.+++.|+.+++++++++.++++++++++.|+++. +.|||+|++||||||.
T Consensus 66 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rP~~v~~lvaG~D~~ 142 (261)
T 1iru_C 66 YKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFG---GKRPFGVSLLYIGWDKH 142 (261)
T ss_dssp EECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBS---SCCCCCEEEEEEEEETT
T ss_pred EEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc---CcCcceEEEEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999999999999887 8899999999999995
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC-CCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC---
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK-DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--- 154 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~--- 154 (170)
+||+||.+||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.++|. ++++++|++|+++
T Consensus 143 ~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~ 222 (261)
T 1iru_C 143 YGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGK 222 (261)
T ss_dssp TEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSS
T ss_pred CCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCe
Confidence 689999999999999999999999999999999999999 99999999999999999999986 8999999999997
Q ss_pred --eEEcCHHHHHHHHHhC
Q 030843 155 --YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 --~~~~~~~ei~~~~~~~ 170 (170)
|++++++||+++++++
T Consensus 223 ~~~~~l~~~ei~~~l~~~ 240 (261)
T 1iru_C 223 TVIRVLKQKEVEQLIKKH 240 (261)
T ss_dssp CEEEECCHHHHHHHHHHH
T ss_pred eeEEECCHHHHHHHHHHH
Confidence 6999999999998753
No 16
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=3.3e-41 Score=258.79 Aligned_cols=163 Identities=29% Similarity=0.484 Sum_probs=157.0
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++++|.|+++. +.|||+|++||||||++
T Consensus 63 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~rp~~v~~lvaG~D~~ 139 (233)
T 1ryp_F 63 IKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSY---GGRPYGVGLLIIGYDKS 139 (233)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBT---TCCCCCEEEEEEEEETT
T ss_pred EEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccc---CCcCcceEEEEEEEeCC
Confidence 589999999999999999999999999999999999999999999999999999999887 88999999999999998
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC--CC--CHHHHHHHHHHHHHHhhccc-C-CCCceEEEEEeCC
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK--DL--TLQEAETIALSILKQVMEEK-V-TPNNVDIARVAPT 154 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~--s~~ea~~l~~~~l~~~~~~d-~-~~~~~~i~ii~~~ 154 (170)
||+||.+||+|++.+++++|+|+|++.++++||+.|++ +| |++||+++++++|..+. +| . ++++++|++|+++
T Consensus 140 gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~ 218 (233)
T 1ryp_F 140 GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKD 218 (233)
T ss_dssp EEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETT
T ss_pred cCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECC
Confidence 99999999999999999999999999999999999998 99 99999999999999999 65 4 8999999999999
Q ss_pred --eEEcCHHHHHHHH
Q 030843 155 --YHLYTPSEVEAVI 167 (170)
Q Consensus 155 --~~~~~~~ei~~~~ 167 (170)
+++++++||+++|
T Consensus 219 ~~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 219 TPFTIYDGEAVAKYI 233 (233)
T ss_dssp EEEEEEEGGGGGGGC
T ss_pred CCEEECCHHHHHhhC
Confidence 9999999998764
No 17
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.3e-40 Score=250.74 Aligned_cols=163 Identities=20% Similarity=0.304 Sum_probs=156.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++.++.|++ +||++++||||||++
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~-------~~~~v~~lvaG~D~~ 107 (204)
T 1iru_L 35 IEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG-------MGLSMGTMICGWDKR 107 (204)
T ss_dssp EEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTT-------SCCCBEEEEEEECSS
T ss_pred EEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCC-------CCeeEEEEEEEEeCC
Confidence 5799999999999999999999999999999999999999999999999999976643 589999999999998
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEEc
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 158 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~~ 158 (170)
||+||.+||+|++.++++.|+|+|++.++++||+.|+++||.+||++++++||..+.+||. ++++++|++|+++ ++.+
T Consensus 108 gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l 187 (204)
T 1iru_L 108 GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRV 187 (204)
T ss_dssp SEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEE
T ss_pred CCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEe
Confidence 9999999999999999999999999999999999999999999999999999999999996 8999999999999 9999
Q ss_pred CHHHHHHHHHhC
Q 030843 159 TPSEVEAVINRL 170 (170)
Q Consensus 159 ~~~ei~~~~~~~ 170 (170)
+++||+++++++
T Consensus 188 ~~~ei~~~~~~~ 199 (204)
T 1iru_L 188 SSDNVADLHEKY 199 (204)
T ss_dssp EEEEHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 999999998753
No 18
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.3e-40 Score=256.27 Aligned_cols=165 Identities=33% Similarity=0.594 Sum_probs=158.8
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEe-C
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-E 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d-~ 79 (170)
|+|++||+|+++|+.+|++.+.++++.+++.|+.+++++++++.+++++++++|.|+++. +.|||+|++|||||| .
T Consensus 63 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rp~~v~~lvaG~D~~ 139 (248)
T 1iru_D 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN---GRRPFGISALIVGFDFD 139 (248)
T ss_dssp EESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBT---TBCCCCEEEEEEEECSS
T ss_pred EEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC---CcccccEEEEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999999999999987 889999999999999 6
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCC--CHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC--e
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL--TLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--Y 155 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~--s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~--~ 155 (170)
+||+||.+||+|++.+++++|+|+|++.++++||+.|+++| |++||++++++||..+.+ .++++++|++|+++ +
T Consensus 140 ~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~~ 217 (248)
T 1iru_D 140 GTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQSL 217 (248)
T ss_dssp SCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSCE
T ss_pred CCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCcE
Confidence 78999999999999999999999999999999999999999 999999999999999997 47999999999999 9
Q ss_pred EEcCHHHHHHHHHhC
Q 030843 156 HLYTPSEVEAVINRL 170 (170)
Q Consensus 156 ~~~~~~ei~~~~~~~ 170 (170)
++++++||+++++++
T Consensus 218 ~~l~~~ei~~~~~~~ 232 (248)
T 1iru_D 218 KILNPEEIEKYVAEI 232 (248)
T ss_dssp ECCCHHHHHHHTTTT
T ss_pred EECCHHHHHHHHHHH
Confidence 999999999998764
No 19
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.5e-40 Score=254.89 Aligned_cols=165 Identities=19% Similarity=0.319 Sum_probs=150.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHH-HHHHHhcCCCCCCCCccceEEEEEEEEe
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYG-EPMTVESTTQALC-DLALRFGEGDEESMSRPFGVSLLIAGSD 78 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls-~~~~~~~~~~~~~~~rP~~v~~iiaG~d 78 (170)
|+|++||+|+++|+.+|++.+.+.++..++.|+++++ .+++++.++++++ .+.|.|+++ .|||+|++||||||
T Consensus 54 ~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~-----~rP~gv~~liaG~D 128 (248)
T 3mi0_A 54 SELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQ-----AKPYEVELCVAEVA 128 (248)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHS-----SSCCCEEEEEEECC
T ss_pred EEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccC-----CCCceEEEEEEEEc
Confidence 6899999999999999999999999999999999999 8999999999999 677889874 49999999999999
Q ss_pred C----CCCeEEEECCCCceec-ccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhh-------cccCCCCce
Q 030843 79 E----NGPSLYYTDPSGTFWQ-CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVM-------EEKVTPNNV 146 (170)
Q Consensus 79 ~----~g~~L~~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~-------~~d~~~~~~ 146 (170)
. +||+||++||+|++.+ ++++|+|+|++.++++||+.|+++||++||++++++||..+. +++++++++
T Consensus 129 ~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~i 208 (248)
T 3mi0_A 129 HYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASL 208 (248)
T ss_dssp CTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTE
T ss_pred CCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcE
Confidence 8 7899999999999995 999999999999999999999999999999999999999999 666789999
Q ss_pred EEEEEeCC-----eEEcCHHHHHHHHHhC
Q 030843 147 DIARVAPT-----YHLYTPSEVEAVINRL 170 (170)
Q Consensus 147 ~i~ii~~~-----~~~~~~~ei~~~~~~~ 170 (170)
+|++|+++ |++++++||+++|+++
T Consensus 209 ev~vv~~~g~~~~f~~l~~~ei~~~l~~~ 237 (248)
T 3mi0_A 209 EVAVLDANRPRRAFRRITGSALQALLVDQ 237 (248)
T ss_dssp EEEEEETTSSSCCEEECCHHHHHHTC---
T ss_pred EEEEEECCCCcccEEECCHHHHHHHHHHc
Confidence 99999997 9999999999998753
No 20
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=4.8e-40 Score=255.28 Aligned_cols=166 Identities=24% Similarity=0.395 Sum_probs=159.5
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEe-C
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-E 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d-~ 79 (170)
|+|++||+|+++|..+|++.++++++.+++.|+++++++++++.+++++++++|.|+++. +.|||+|++|||||| .
T Consensus 67 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rP~~v~~lvaG~D~~ 143 (254)
T 1iru_G 67 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS---AVRPFGCSFMLGSYSVN 143 (254)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBS---SBCCCSEEEEEEEEETT
T ss_pred EEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccc---ccccceEEEEEEEEeCC
Confidence 589999999999999999999999999999999999999999999999999999999987 889999999999999 6
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC----
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT---- 154 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~---- 154 (170)
+||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++. ++++++|++|+++
T Consensus 144 ~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~ 223 (254)
T 1iru_G 144 DGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGR 223 (254)
T ss_dssp TEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTC
T ss_pred CCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999886 7899999999986
Q ss_pred eEEcCHHHHHHHHHh
Q 030843 155 YHLYTPSEVEAVINR 169 (170)
Q Consensus 155 ~~~~~~~ei~~~~~~ 169 (170)
+++++++||+++++.
T Consensus 224 ~~~l~~~~i~~~~~~ 238 (254)
T 1iru_G 224 HEIVPKDIREEAEKY 238 (254)
T ss_dssp CEECCHHHHHHHHHH
T ss_pred eEECCHHHHHHHHHH
Confidence 999999999999864
No 21
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.4e-39 Score=252.13 Aligned_cols=167 Identities=34% Similarity=0.526 Sum_probs=159.9
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQN-HRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
|+|++|++|++||..+|++.+.++++.+++. |+..++.+++++.+++.++++++.|+++. +.|||+|++||||||.
T Consensus 65 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~---~~rp~~v~~lvaG~D~ 141 (250)
T 1ryp_B 65 SLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSG---GVRPFGVSLLIAGHDE 141 (250)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSB---TBCCCCEEEEEEEEET
T ss_pred EEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC---CcccceEEEEEEEEcC
Confidence 5799999999999999999999999999999 99999999999999999999999999887 7899999999999997
Q ss_pred -CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC----
Q 030843 80 -NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---- 154 (170)
Q Consensus 80 -~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~---- 154 (170)
+||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++.++++++|++|+++
T Consensus 142 ~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~ 221 (250)
T 1ryp_B 142 FNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDL 221 (250)
T ss_dssp TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGG
T ss_pred CCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEcccccc
Confidence 579999999999999999999999999999999999999999999999999999999998779999999999972
Q ss_pred -------------eEEcCHHHHHHHHHhC
Q 030843 155 -------------YHLYTPSEVEAVINRL 170 (170)
Q Consensus 155 -------------~~~~~~~ei~~~~~~~ 170 (170)
|++++++||+++++++
T Consensus 222 ~~~~~~~~~~~~~~~~l~~~ei~~~l~~~ 250 (250)
T 1ryp_B 222 LGYTGIPTDKGPRFRKLTSQEINDRLEAL 250 (250)
T ss_dssp TSEESCSSCCCCSEEECCHHHHHHHHTTC
T ss_pred ccccccccCCCCCeEECCHHHHHHHHHhC
Confidence 8999999999999875
No 22
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.5e-39 Score=251.09 Aligned_cols=165 Identities=28% Similarity=0.492 Sum_probs=156.5
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++++|.|+++. +.|||++++||||||.+
T Consensus 64 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~rp~~v~~lvaG~D~~ 140 (244)
T 1ryp_G 64 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN---SVRPFGVSTIFGGVDKN 140 (244)
T ss_dssp EEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT---TBCCCCEEEEEEEEETT
T ss_pred EEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CccCceEEEEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999999999999987 78999999999999988
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhh---ccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeC---
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ---YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAP--- 153 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~---~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~--- 153 (170)
||+||.+||+|++.+++++|+|+|++.++++||+. |+++||++||++++++||..+.++|. ++++++|++|++
T Consensus 141 gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~ 220 (244)
T 1ryp_G 141 GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSET 220 (244)
T ss_dssp EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTT
T ss_pred cCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCC
Confidence 99999999999999999999999999999999997 99999999999999999999999997 799999999998
Q ss_pred C-eEEcCHHHHHHHHH
Q 030843 154 T-YHLYTPSEVEAVIN 168 (170)
Q Consensus 154 ~-~~~~~~~ei~~~~~ 168 (170)
+ ++++.|+++.+..+
T Consensus 221 ~g~~~~~~~~~~~~~~ 236 (244)
T 1ryp_G 221 NGLHKFVKGDLLQEAI 236 (244)
T ss_dssp TTSEEECCTHHHHHHH
T ss_pred CCeeeeChHHHHHHHH
Confidence 6 88877777766544
No 23
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=6.9e-40 Score=248.12 Aligned_cols=162 Identities=20% Similarity=0.333 Sum_probs=155.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEe-C
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-E 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d-~ 79 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++.++.|++ .||++++|||||| .
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~-------~p~~v~~lvaG~D~~ 107 (212)
T 1ryp_L 35 IEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG-------AGLSMGTMICGYTRK 107 (212)
T ss_dssp EEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT-------SCCCBEEEEEEEETT
T ss_pred eeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCC-------CCceEEEEEEEEeCC
Confidence 5799999999999999999999999999999999999999999999999999988865 3899999999999 4
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEE
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 157 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~ 157 (170)
+||+||.+||+|++.++++.|+|+|++.++++||+.|+++||++||++++++||..+.+||. ++++++|++|+++ +++
T Consensus 108 ~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~ 187 (212)
T 1ryp_L 108 EGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY 187 (212)
T ss_dssp TEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred CCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEE
Confidence 68999999999999999999999999999999999999999999999999999999999996 8999999999999 999
Q ss_pred cCHHHHHHHHHh
Q 030843 158 YTPSEVEAVINR 169 (170)
Q Consensus 158 ~~~~ei~~~~~~ 169 (170)
++++||++++.+
T Consensus 188 ~~~~ei~~~~~~ 199 (212)
T 1ryp_L 188 HGNHDVGELFWK 199 (212)
T ss_dssp EEEEEHHHHHHH
T ss_pred ECHHHHHHHHHH
Confidence 999999999764
No 24
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.2e-39 Score=253.52 Aligned_cols=163 Identities=28% Similarity=0.485 Sum_probs=154.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++||+|+++|+.+|++.++++++.+++.|+++++++++++.+++++++++|.|+++. +.|||+|++||||||.+
T Consensus 68 ~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~---~~rP~gv~~lvaG~D~~ 144 (288)
T 3nzj_F 68 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN---SVRPFGVSTIFGGVDKN 144 (288)
T ss_dssp EEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT---TBCCCCEEEEEEEEETT
T ss_pred EEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhc---cCCCceEEEEEEEEeCC
Confidence 589999999999999999999999999999999999999999999999999999999988 89999999999999998
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhh---ccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeC-C-
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ---YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAP-T- 154 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~---~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~-~- 154 (170)
||+||.+||+|++.+++++|+|+|++.++++||+. |+++||++||++++++||..+.+++. ++++++|++|++ +
T Consensus 145 Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~ 224 (288)
T 3nzj_F 145 GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSET 224 (288)
T ss_dssp EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTS
T ss_pred CCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCC
Confidence 99999999999999999999999999999999999 99999999999999999999999986 789999999999 3
Q ss_pred ---eEEcCHHHHHHH
Q 030843 155 ---YHLYTPSEVEAV 166 (170)
Q Consensus 155 ---~~~~~~~ei~~~ 166 (170)
++.++.+++++.
T Consensus 225 ~~~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 225 NGLHKFVKGDLLQEA 239 (288)
T ss_dssp TTCCEECCHHHHHHH
T ss_pred CceEEECCHHHHHHH
Confidence 667777666543
No 25
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=5.4e-39 Score=246.76 Aligned_cols=166 Identities=20% Similarity=0.204 Sum_probs=155.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|++||..+|++.++++++.+++.|+.+++++++++.++++++++++.|+++ ..|||+|++||||||.+
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~----~~rp~~v~~lvaG~D~~ 110 (235)
T 1q5q_H 35 YVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGA----AMQGLAVVPLLVGYDLD 110 (235)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHH----HTTTCCEEEEEEEECTT
T ss_pred EEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHh----hhcccceEEEEEEEECC
Confidence 57999999999999999999999999999999999999999999999999999888765 36899999999999986
Q ss_pred -C-----CeEEEECCCCceecc--cEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCC-c-e---
Q 030843 81 -G-----PSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPN-N-V--- 146 (170)
Q Consensus 81 -g-----~~L~~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~-~-~--- 146 (170)
| |+||.+||+|++.++ +++|+|+|++.++++||+.|+++||++||++++++||..+.++|. +++ . +
T Consensus 111 ~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~ 190 (235)
T 1q5q_H 111 ADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGI 190 (235)
T ss_dssp CSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTB
T ss_pred CCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCccccccc
Confidence 7 899999999999999 999999999999999999999999999999999999999999997 443 2 3
Q ss_pred --EEEEEeCC-eEEcCHHHHHHHHHhC
Q 030843 147 --DIARVAPT-YHLYTPSEVEAVINRL 170 (170)
Q Consensus 147 --~i~ii~~~-~~~~~~~ei~~~~~~~ 170 (170)
+|++|+++ +++++++|++++++++
T Consensus 191 ~~ev~vi~~~g~~~l~~~ei~~~~~~~ 217 (235)
T 1q5q_H 191 YPTAVTITQAGAVHVSEETTSELARRI 217 (235)
T ss_dssp CCEEEEEETTEEEECCHHHHHHHHHHH
T ss_pred ccEEEEEeCCCeEEeCHHHHHHHHHHH
Confidence 99999999 9999999999998753
No 26
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.3e-39 Score=244.01 Aligned_cols=161 Identities=19% Similarity=0.286 Sum_probs=152.9
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++.++.|+ +||++++|+||||+
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~--------~p~~~~~lvaG~D~~ 106 (205)
T 1iru_H 35 TPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR--------EDLMAGIIIAGWDPQ 106 (205)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT--------TTCCEEEEEEEEETT
T ss_pred EEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC--------cCccEEEEEEEEeCC
Confidence 589999999999999999999999999999999999999999999999999997665 29999999999998
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC---e
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT---Y 155 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~---~ 155 (170)
+||+||.+||+|++.+++++++|+|++.++++||+.|+++||.+||++++++||..+.++|. ++++++|++|+++ +
T Consensus 107 ~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 186 (205)
T 1iru_H 107 EGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVER 186 (205)
T ss_dssp TEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEE
Confidence 68999999999999999999999999999999999999999999999999999999999996 8999999999999 7
Q ss_pred EEcCHHHHHHHHHh
Q 030843 156 HLYTPSEVEAVINR 169 (170)
Q Consensus 156 ~~~~~~ei~~~~~~ 169 (170)
+.++++||++++++
T Consensus 187 ~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 187 QVLLGDQIPKFAVA 200 (205)
T ss_dssp EEECGGGSCCCCCC
T ss_pred EEeChHHhhHHHhh
Confidence 89999999887653
No 27
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.7e-38 Score=238.10 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=147.5
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|+++|..+|++.+.++++.+++.|+.+++++++++.+++++++.++.|++ .++||++++||||||+
T Consensus 36 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~-----~r~p~~v~~lvaG~D~~ 110 (198)
T 1ryp_K 36 RQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIR-----SRRPYQVNVLIGGYDKK 110 (198)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTT-----SSSCCCEEEEEEEEETT
T ss_pred EEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc-----cCCCceEEEEEEEEeCC
Confidence 5799999999999999999999999999999999999999999999999999988874 2259999999999996
Q ss_pred -CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eE
Q 030843 80 -NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YH 156 (170)
Q Consensus 80 -~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~ 156 (170)
+||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++|. ++++++|++|+++ ++
T Consensus 111 ~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~ 190 (198)
T 1ryp_K 111 KNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIR 190 (198)
T ss_dssp TTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEE
T ss_pred CCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEE
Confidence 68999999999999999999999999999999999999999999999999999999999996 8999999999999 88
Q ss_pred EcCH
Q 030843 157 LYTP 160 (170)
Q Consensus 157 ~~~~ 160 (170)
++++
T Consensus 191 ~~~~ 194 (198)
T 1ryp_K 191 QVDD 194 (198)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8876
No 28
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=9.5e-39 Score=245.12 Aligned_cols=156 Identities=25% Similarity=0.398 Sum_probs=148.8
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++||+|++||..+|++.+.++++.+++.|+++++++++++.+++++++.+++| .+||++++||||||++
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~--------~~p~~v~llvaG~D~~ 106 (234)
T 3unf_H 35 HFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY--------QGHVGASLVVGGVDLN 106 (234)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT--------TTCSCEEEEEEEEETT
T ss_pred EEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhc--------CCCccEEEEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999999999554 2699999999999998
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEEc
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 158 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~~ 158 (170)
||+||.+||+|++.++++.|+|+|++.++++||+.|+++||++||++++++||..+.++|. ++++++|++|+++ ++.+
T Consensus 107 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l 186 (234)
T 3unf_H 107 GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQ 186 (234)
T ss_dssp EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEE
T ss_pred CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999998 8999999999999 9999
Q ss_pred CHHHHH
Q 030843 159 TPSEVE 164 (170)
Q Consensus 159 ~~~ei~ 164 (170)
++++++
T Consensus 187 ~~~~i~ 192 (234)
T 3unf_H 187 RALSTP 192 (234)
T ss_dssp EEEECC
T ss_pred Cceecc
Confidence 887764
No 29
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=9.7e-39 Score=251.32 Aligned_cols=162 Identities=20% Similarity=0.333 Sum_probs=154.9
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEe-C
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-E 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d-~ 79 (170)
|+|+++++|+++|..+|++.+.++++.+++.|+++++++++++.++++++++++.|++ +||++++|||||| .
T Consensus 110 ~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~-------~p~~v~~lvaG~D~~ 182 (287)
T 3nzj_K 110 IEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG-------AGLSMGTMICGYTRK 182 (287)
T ss_dssp EEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT-------SCCCEEEEEEEEETT
T ss_pred EEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC-------CCceEEEEEEEEcCC
Confidence 5899999999999999999999999999999999999999999999999999977753 4999999999999 4
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEE
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 157 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~ 157 (170)
+||+||.+||+|++.++++.|+|+|++.++++||+.|+++||++||++++++||..+.+||. ++++++|++|+++ +++
T Consensus 183 ~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~ 262 (287)
T 3nzj_K 183 EGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY 262 (287)
T ss_dssp TEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred CCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEE
Confidence 67999999999999999999999999999999999999999999999999999999999997 8999999999999 999
Q ss_pred cCHHHHHHHHHh
Q 030843 158 YTPSEVEAVINR 169 (170)
Q Consensus 158 ~~~~ei~~~~~~ 169 (170)
++++||++++.+
T Consensus 263 l~~~ev~~~l~~ 274 (287)
T 3nzj_K 263 HGNHDVGELFWK 274 (287)
T ss_dssp EEEEEHHHHHHH
T ss_pred eCHHHHHHHHHH
Confidence 999999998764
No 30
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.3e-39 Score=246.42 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=151.9
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRF-SYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
|+|++|++|+++|..+|++.+.++++.+++.|+. +++++++++.+++++++.+ |+++. ..|||++++||||||+
T Consensus 43 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~---~~~P~~v~~lvaG~D~ 117 (219)
T 1iru_N 43 MRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAM--YSRRS---KMNPLWNTMVIGGYAD 117 (219)
T ss_dssp EEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHH--HHHHH---TTCCCCEEEEEEEEET
T ss_pred EEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHhcc---cCCCceEEEEEEEEEC
Confidence 5899999999999999999999999999999998 8999999999999999999 55554 6799999999999998
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC--CCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-e
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-Y 155 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~ 155 (170)
+||+||.+||+|++.++++.|+|+|++.++++||+.|++ +||++||++++++||..+.+||. ++++++|++|+++ +
T Consensus 118 ~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~ 197 (219)
T 1iru_N 118 GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGV 197 (219)
T ss_dssp TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEE
T ss_pred CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCE
Confidence 899999999999999999999999999999999999999 99999999999999999999997 8999999999999 9
Q ss_pred EEcCHHHHHH
Q 030843 156 HLYTPSEVEA 165 (170)
Q Consensus 156 ~~~~~~ei~~ 165 (170)
+.++++||+.
T Consensus 198 ~~~~~~~i~~ 207 (219)
T 1iru_N 198 EIEGPLSTET 207 (219)
T ss_dssp EEEEEECCCC
T ss_pred EEcCCeeccc
Confidence 9999888753
No 31
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.4e-38 Score=246.33 Aligned_cols=165 Identities=22% Similarity=0.353 Sum_probs=152.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH-HHHHhcCCCCCCCCccceEEEEEEEEe
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYG-EPMTVESTTQALCD-LALRFGEGDEESMSRPFGVSLLIAGSD 78 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls~-~~~~~~~~~~~~~~rP~~v~~iiaG~d 78 (170)
|+|++||+|+++|..+|++.++++++.+++.|++.++ ++++++.+++++++ +.|.|+. +.|||+|++||||||
T Consensus 54 ~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~-----~~rP~~v~~lvaG~D 128 (259)
T 1q5q_A 54 SELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE-----QPKPYEVEICVAEVG 128 (259)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH-----SSSCCCEEEEEEECC
T ss_pred EEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc-----CCCCceEEEEEEEEc
Confidence 6899999999999999999999999999999999988 49999999999999 6677884 569999999999999
Q ss_pred ----CCCCeEEEECCCCcee-cccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhh-----cccCCCCceEE
Q 030843 79 ----ENGPSLYYTDPSGTFW-QCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVM-----EEKVTPNNVDI 148 (170)
Q Consensus 79 ----~~g~~L~~id~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~-----~~d~~~~~~~i 148 (170)
.+||+||.+||+|++. +++++|+|+|++.++++||+.|+++||++||++++++||..+. +||+++++++|
T Consensus 129 ~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev 208 (259)
T 1q5q_A 129 RVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEV 208 (259)
T ss_dssp CSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEE
T ss_pred ccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEE
Confidence 6789999999999999 7899999999999999999999999999999999999999998 88889999999
Q ss_pred EEEeCC-----eEEcCHHHHHHHHHhC
Q 030843 149 ARVAPT-----YHLYTPSEVEAVINRL 170 (170)
Q Consensus 149 ~ii~~~-----~~~~~~~ei~~~~~~~ 170 (170)
++|+++ |++++++||+.++.++
T Consensus 209 ~vi~~~~~~~~~~~l~~~ei~~~~~~~ 235 (259)
T 1q5q_A 209 AVLDQSRPRRAFRRIAGTALEQLVPAE 235 (259)
T ss_dssp EEEETTSSSCCEEECCHHHHHTTSCCC
T ss_pred EEEECCCCcCCeEECCHHHHHHHHHHh
Confidence 999997 9999999999987653
No 32
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=6.1e-38 Score=247.51 Aligned_cols=166 Identities=20% Similarity=0.194 Sum_probs=155.9
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|+++++|+++|..+|++.++++++.+++.|+++++++++++.++++|+++++.|+++ .+|||+|++||||||.+
T Consensus 100 ~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~----~~rp~~v~lLvaG~D~~ 175 (294)
T 1q5r_H 100 YVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGA----AMQGLAVVPLLVGYDLD 175 (294)
T ss_dssp EEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHH----HTTTTCEEEEEEEECTT
T ss_pred EEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhh----hcCCcceEEEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999999999988765 46999999999999986
Q ss_pred -C-----CeEEEECCCCceecc--cEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCC--ce---
Q 030843 81 -G-----PSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPN--NV--- 146 (170)
Q Consensus 81 -g-----~~L~~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~--~~--- 146 (170)
| |+||.+||+|++.++ +++|+|+|+++++++||+.|+++||++||++++++||..+.++|. +++ ++
T Consensus 176 ~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i 255 (294)
T 1q5r_H 176 ADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGI 255 (294)
T ss_dssp CSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTB
T ss_pred CCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhccc
Confidence 6 899999999999999 999999999999999999999999999999999999999999997 443 36
Q ss_pred --EEEEEeCC-eEEcCHHHHHHHHHhC
Q 030843 147 --DIARVAPT-YHLYTPSEVEAVINRL 170 (170)
Q Consensus 147 --~i~ii~~~-~~~~~~~ei~~~~~~~ 170 (170)
+|++|+++ +++++++||+++++++
T Consensus 256 ~~ev~vI~~~g~~~l~~~ei~~~l~~i 282 (294)
T 1q5r_H 256 YPTAVTITQAGAVHVSEETTSELARRI 282 (294)
T ss_dssp CCEEEEEETTEEEECCHHHHHHHHHHH
T ss_pred CCEEEEEECCCEEEcCHHHHHHHHHHH
Confidence 99999999 9999999999998763
No 33
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1e-38 Score=244.87 Aligned_cols=161 Identities=16% Similarity=0.255 Sum_probs=152.4
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEE
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRF-----SYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIA 75 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iia 75 (170)
|+|++|++|+++|..+|++.+.++++.+++.|+. +++++++++.+++++++.+ |+++. ..|||++++|||
T Consensus 43 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~---~~~P~~v~~lva 117 (233)
T 1ryp_N 43 IPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRS---KMNPLWNAIIVA 117 (233)
T ss_dssp EEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHH---TTCCCCEEEEEE
T ss_pred EEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHH--HHhcC---CCCCceEEEEEE
Confidence 5899999999999999999999999999999999 8999999999999999999 66665 679999999999
Q ss_pred EEeCC-CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC-----CCCHHHHHHHHHHHHHHhhcccC-CCCceEE
Q 030843 76 GSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK-----DLTLQEAETIALSILKQVMEEKV-TPNNVDI 148 (170)
Q Consensus 76 G~d~~-g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-----~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i 148 (170)
|||.+ ||+||.+||+|++.++++.|+|+|++.++++||+.|++ +||++||++++++||..+.+||. ++++++|
T Consensus 118 G~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v 197 (233)
T 1ryp_N 118 GVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSL 197 (233)
T ss_dssp EECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred EEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEE
Confidence 99986 89999999999999999999999999999999999999 99999999999999999999997 8999999
Q ss_pred EEEeCC--eEEcCHHHHHHH
Q 030843 149 ARVAPT--YHLYTPSEVEAV 166 (170)
Q Consensus 149 ~ii~~~--~~~~~~~ei~~~ 166 (170)
++|+++ ++.++++||+++
T Consensus 198 ~vi~~~~g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 198 AIIDKNTGLTFKKNLQVENM 217 (233)
T ss_dssp EEEETTTEEEEEEEEECCSC
T ss_pred EEEECCCCeEEcChHhcccc
Confidence 999998 999998887653
No 34
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=5.2e-37 Score=232.41 Aligned_cols=150 Identities=23% Similarity=0.289 Sum_probs=142.5
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++.+ |+++. |||++++||||||.+
T Consensus 44 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r~-----~P~~v~~lvaG~D~~ 116 (213)
T 1iru_M 44 YKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL--YSRRF-----FPYYVYNIIGGLDEE 116 (213)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HHTTT-----SCCCEEEEEEEECTT
T ss_pred EEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhhCC-----CCceEEEEEEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999 77654 999999999999976
Q ss_pred C-CeEEEECCCCceecccEEEeCCCChhhhHHHHhh---------ccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEE
Q 030843 81 G-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ---------YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIA 149 (170)
Q Consensus 81 g-~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~---------~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ 149 (170)
| |+||.+||+|++.+++++|+|+|++.++++||+. |+++||++||++++++||..+.++|. ++++++|+
T Consensus 117 g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~ 196 (213)
T 1iru_M 117 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRIC 196 (213)
T ss_dssp SCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEE
T ss_pred CCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEE
Confidence 5 9999999999999999999999999999999999 88899999999999999999999997 89999999
Q ss_pred EEeCC-eEE
Q 030843 150 RVAPT-YHL 157 (170)
Q Consensus 150 ii~~~-~~~ 157 (170)
+|+++ ++.
T Consensus 197 vi~~~g~~~ 205 (213)
T 1iru_M 197 IVTKEGIRE 205 (213)
T ss_dssp EEETTEEEE
T ss_pred EEcCCCeEE
Confidence 99999 443
No 35
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3.9e-37 Score=242.70 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=148.0
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|+++|..+|++.++++++.+++.|+..++.+++++.++++++++++.|+. . .+|||+|++||||||.+
T Consensus 92 ~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~---~~rpf~v~~lvaG~D~~ 167 (291)
T 2jay_A 92 YITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-A---AMQGLLALPLLAGYDIH 167 (291)
T ss_dssp EEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-H---HHHTCCCEEEEEEECTT
T ss_pred EEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-h---hccccceeEEEEEEeCC
Confidence 5799999999999999999999999999999999999999999999999999988765 2 57899999999999985
Q ss_pred -C-----CeEEEECCCCcee--cccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccCCCCce------
Q 030843 81 -G-----PSLYYTDPSGTFW--QCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNV------ 146 (170)
Q Consensus 81 -g-----~~L~~id~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~------ 146 (170)
+ |+||.+||+|++. ++++.|+|+|+++++++||+.|+++||.+||++++++||..+.++|+..+++
T Consensus 168 g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~ 247 (291)
T 2jay_A 168 ASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGI 247 (291)
T ss_dssp CSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------
T ss_pred CCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCccccccc
Confidence 4 8999999999999 8999999999999999999999999999999999999999999999843333
Q ss_pred --EEEEEeCC-eEEcCHHHHHHHHHhC
Q 030843 147 --DIARVAPT-YHLYTPSEVEAVINRL 170 (170)
Q Consensus 147 --~i~ii~~~-~~~~~~~ei~~~~~~~ 170 (170)
+|++|+++ +++++++||+++++++
T Consensus 248 ~~~v~vi~~dg~~~l~~~ei~~~~~~~ 274 (291)
T 2jay_A 248 FPTAVIIDADGAVDVPESRIAELARAI 274 (291)
T ss_dssp CCEEEEEETTEEEECCHHHHHHHHHHC
T ss_pred CCEEEEEECCCeEEcCHHHHHHHHHHH
Confidence 69999999 9999999999998864
No 36
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.3e-36 Score=231.75 Aligned_cols=152 Identities=23% Similarity=0.296 Sum_probs=143.7
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++++++.++.| .|||++++||||||.+
T Consensus 35 ~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~--------~~p~~v~~lvaG~D~~ 106 (222)
T 1ryp_I 35 HRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY--------QGHIGAYLIVAGVDPT 106 (222)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT--------TTCSCEEEEEEEEETT
T ss_pred EEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc--------CCCCCeeEEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999999998544 2799999999999998
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC--eEE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHL 157 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~--~~~ 157 (170)
||+||.+||+|++.++++.|+|+|++.++++||+.|+++||++||++++++||..+.++|. ++++++|++++++ ++.
T Consensus 107 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~ 186 (222)
T 1ryp_I 107 GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEY 186 (222)
T ss_dssp EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEE
T ss_pred CCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998 7999999999998 665
Q ss_pred cCH
Q 030843 158 YTP 160 (170)
Q Consensus 158 ~~~ 160 (170)
+.+
T Consensus 187 ~~~ 189 (222)
T 1ryp_I 187 LRN 189 (222)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
No 37
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.3e-36 Score=228.42 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=143.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++++++|..+|++.+.++++.+++.|+.+++++++++.+++++++.+..+. + ..|||++++||||||+
T Consensus 36 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~-~----~~~p~~~~~lvaG~D~~ 110 (201)
T 1iru_K 36 FKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCL-R----SRTPYHVNLLLAGYDEH 110 (201)
T ss_dssp EECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-T----SSSCCCEEEEEEEEETT
T ss_pred EEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-h----cCCCccEEEEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999987652221 2 2379999999999997
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEE
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 157 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~ 157 (170)
+||+||.+||+|++.++++.|+|+|++.++++||+.|+++||++||++++++||..+.+||. ++++++|++|+++ ++.
T Consensus 111 ~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~ 190 (201)
T 1iru_K 111 EGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHD 190 (201)
T ss_dssp TEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEEC
T ss_pred CCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEE
Confidence 57999999999999999999999999999999999999999999999999999999999998 8999999999999 877
Q ss_pred cCH
Q 030843 158 YTP 160 (170)
Q Consensus 158 ~~~ 160 (170)
+++
T Consensus 191 ~~~ 193 (201)
T 1iru_K 191 LDN 193 (201)
T ss_dssp CCC
T ss_pred eec
Confidence 753
No 38
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.8e-37 Score=232.71 Aligned_cols=158 Identities=18% Similarity=0.289 Sum_probs=146.9
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|+++|..+|++.+.++++.+++.|+.+++++++++.+++++++.++.| +|||++++||||||+
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~--------~~p~~v~~lvaG~D~~ 106 (199)
T 3unf_N 35 SPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY--------REDLLAHLIVAGWDQR 106 (199)
T ss_dssp EEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHT--------TTTCCCCEEEEEEETT
T ss_pred EEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc--------CCCceEEEEEEEEeCC
Confidence 58999999999999999999999999999999999999999999999999999543 269999999999998
Q ss_pred CCCeEEEECCCCceecc-cEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC---
Q 030843 80 NGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--- 154 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~--- 154 (170)
+||+||. |+|++.++ ++.++|+|++.++++||+.|+++||++||++++++||..+.+||. ++++++|++|+++
T Consensus 107 ~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~ 184 (199)
T 3unf_N 107 EGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVD 184 (199)
T ss_dssp TEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEE
T ss_pred CCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEE
Confidence 5799999 99997665 566679999999999999999999999999999999999999997 8999999999999
Q ss_pred eEEcCHHHHHHHHH
Q 030843 155 YHLYTPSEVEAVIN 168 (170)
Q Consensus 155 ~~~~~~~ei~~~~~ 168 (170)
++.++++||+++++
T Consensus 185 ~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 185 HRVILGDELPKFYD 198 (199)
T ss_dssp EEEECGGGSCCCCC
T ss_pred EEEcCcccCccccc
Confidence 89999999987764
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=2.3e-36 Score=230.30 Aligned_cols=150 Identities=21% Similarity=0.333 Sum_probs=142.1
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYG-EPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
|+|+++++|+++|..+|++.+.++++.+++.|+++++ ++++++.+++++++.+ |++++ +||++++||||||.
T Consensus 44 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~-----~P~~v~~ivaG~D~ 116 (222)
T 1ryp_M 44 FDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLL--YGKRF-----FPYYVHTIIAGLDE 116 (222)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTTTT-----SCCCEEEEEEEECT
T ss_pred EEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--HhcCC-----CCceEEEEEEEEcC
Confidence 5799999999999999999999999999999999999 9999999999999999 77654 89999999999997
Q ss_pred CC-CeEEEECCCCceecccEEEeCCCChhhhHHHHhh-----------------ccCCCCHHHHHHHHHHHHHHhhcccC
Q 030843 80 NG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ-----------------YNKDLTLQEAETIALSILKQVMEEKV 141 (170)
Q Consensus 80 ~g-~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~-----------------~~~~~s~~ea~~l~~~~l~~~~~~d~ 141 (170)
+| |+||.+||.|++.++++.|+|+|+..++++||+. |+++||++||++++++||..+.+||+
T Consensus 117 ~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~ 196 (222)
T 1ryp_M 117 DGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHI 196 (222)
T ss_dssp TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBT
T ss_pred CCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 65 9999999999999999999999999999999998 78899999999999999999999997
Q ss_pred -CCCceEEEEEeCC-eEE
Q 030843 142 -TPNNVDIARVAPT-YHL 157 (170)
Q Consensus 142 -~~~~~~i~ii~~~-~~~ 157 (170)
++++++|++|+++ ++.
T Consensus 197 ~sg~~i~v~vi~~~g~~~ 214 (222)
T 1ryp_M 197 QVGDGLEILIVTKDGVRK 214 (222)
T ss_dssp TCCSEEEEEEEETTEEEE
T ss_pred cCCCcEEEEEEcCCCeEE
Confidence 8999999999999 443
No 40
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2.2e-36 Score=232.10 Aligned_cols=153 Identities=22% Similarity=0.356 Sum_probs=145.0
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++++++.++.|+ +||++++||||||.+
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~--------~~~~v~llvaG~D~~ 106 (234)
T 1iru_I 35 HFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYR--------GYIGAALVLGGVDVT 106 (234)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTT--------TCSCEEEEEEEECSS
T ss_pred EEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC--------CCCceeEEEEEEcCC
Confidence 579999999999999999999999999999999999999999999999999985542 589999999999998
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC-eEEc
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 158 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~-~~~~ 158 (170)
||+||.+||+|++.+++++|+|+|++.+.++||+.|+++||++||++++++||..+.++|. ++++++|++|+++ ++.+
T Consensus 107 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~ 186 (234)
T 1iru_I 107 GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFL 186 (234)
T ss_dssp CEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECC
T ss_pred CCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998 7999999999999 8877
Q ss_pred CHH
Q 030843 159 TPS 161 (170)
Q Consensus 159 ~~~ 161 (170)
.+.
T Consensus 187 ~~~ 189 (234)
T 1iru_I 187 RPY 189 (234)
T ss_dssp SEE
T ss_pred cce
Confidence 643
No 41
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=2.5e-36 Score=234.84 Aligned_cols=151 Identities=23% Similarity=0.300 Sum_probs=142.9
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeCC
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 80 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~~ 80 (170)
|+|++||+|++||..+|++.+.++++.+++.|+++++++++++.+++++++.+++| .+||++++||||||++
T Consensus 64 ~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~--------~~~~gv~llvaG~D~~ 135 (261)
T 3nzj_H 64 HRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY--------QGHIGAYLIVAGVDPT 135 (261)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT--------TTCSCEEEEEEEEETT
T ss_pred EEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHh--------cCcccEEEEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999999998443 2699999999999999
Q ss_pred CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC--eEE
Q 030843 81 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHL 157 (170)
Q Consensus 81 g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~--~~~ 157 (170)
||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++|. ++++++|++|+++ ++.
T Consensus 136 Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~ 215 (261)
T 3nzj_H 136 GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEY 215 (261)
T ss_dssp EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEE
T ss_pred CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999997 8999999999999 555
Q ss_pred cC
Q 030843 158 YT 159 (170)
Q Consensus 158 ~~ 159 (170)
+.
T Consensus 216 ~~ 217 (261)
T 3nzj_H 216 LR 217 (261)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 42
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.9e-37 Score=242.11 Aligned_cols=161 Identities=16% Similarity=0.255 Sum_probs=152.2
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEE
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRF-----SYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIA 75 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iia 75 (170)
|+|++|++|+++|..+|++.++++++.+++.|+. +++++++++.+++++++.+ |+++. ..|||+|++|||
T Consensus 76 ~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~---~~~P~~v~~lva 150 (266)
T 1g0u_M 76 IPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRS---KMNPLWNAIIVA 150 (266)
T ss_dssp EECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHH---TTCCCCEEEEEE
T ss_pred EEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHH--HHhcc---CCCCceEEEEEE
Confidence 5799999999999999999999999999999998 8999999999999999999 66665 679999999999
Q ss_pred EEeCC-CCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccC-----CCCHHHHHHHHHHHHHHhhcccC-CCCceEE
Q 030843 76 GSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK-----DLTLQEAETIALSILKQVMEEKV-TPNNVDI 148 (170)
Q Consensus 76 G~d~~-g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-----~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i 148 (170)
|||.+ ||+||.+||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+||. ++++++|
T Consensus 151 G~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v 230 (266)
T 1g0u_M 151 GVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSL 230 (266)
T ss_dssp EECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred EEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 99986 89999999999999999999999999999999999999 99999999999999999999997 8999999
Q ss_pred EEEeCC--eEEcCHHHHHHH
Q 030843 149 ARVAPT--YHLYTPSEVEAV 166 (170)
Q Consensus 149 ~ii~~~--~~~~~~~ei~~~ 166 (170)
++|+++ ++.++++||+.+
T Consensus 231 ~vI~k~~g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 231 AIIDKNTGLTFKKNLQVENM 250 (266)
T ss_dssp EEEETTTEEEEEEEEECCCC
T ss_pred EEEECCCCeEEcCHHHhhhh
Confidence 999998 999998887653
No 43
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=3.5e-36 Score=226.61 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=140.2
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.+++++++++.+++++++.+ |++++ .||++++||||||+
T Consensus 43 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r~-----~P~~v~~lvaG~D~~ 115 (205)
T 1iru_J 43 FPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL--YEKRF-----GPYYTEPVIAGLDPK 115 (205)
T ss_dssp EECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHH--HTTTT-----SCCSCCCEEEEECTT
T ss_pred EEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--HHhcC-----CCceEEEEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999999999 88865 59999999999995
Q ss_pred -CCCeEEEECCCCceecc-cEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC
Q 030843 80 -NGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 154 (170)
Q Consensus 80 -~g~~L~~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~ 154 (170)
+||+||.+||+|++.++ +++|+|+|++.++++||+.|+++||++||++++++||..+.++|. ++++++|++|+++
T Consensus 116 ~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 193 (205)
T 1iru_J 116 TFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKD 193 (205)
T ss_dssp SCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESS
T ss_pred CCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCC
Confidence 68999999999999665 679999999999999999999999999999999999999999998 7999999999999
No 44
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.3e-35 Score=223.29 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=139.3
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|+ |++|+++|..+|++.+.++++.+++.|+.+++++++++.+++++++.+ |++++ .||++++||||||+
T Consensus 43 ~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~~~-----~P~~v~~lvaG~D~~ 114 (204)
T 1ryp_J 43 FHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSL--YERRF-----GPYFVGPVVAGINSK 114 (204)
T ss_dssp EEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HTTTT-----SCCCEEEEEEEECTT
T ss_pred EEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH--HHhcC-----CCceEEEEEEEEeCC
Confidence 5789 999999999999999999999999999999999999999999999999 88875 49999999999996
Q ss_pred -CCCeEEEECCCCceecc-cEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC
Q 030843 80 -NGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 154 (170)
Q Consensus 80 -~g~~L~~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~ 154 (170)
+||+||.+||+|++.++ +++|+|+|++.++++||+.|+++||++||++++++||..+.++|. ++++++|++|+++
T Consensus 115 ~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 192 (204)
T 1ryp_J 115 SGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKD 192 (204)
T ss_dssp TCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESS
T ss_pred CCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCC
Confidence 67999999999999665 679999999999999999999999999999999999999999997 8999999999999
No 45
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.1e-35 Score=224.06 Aligned_cols=145 Identities=16% Similarity=0.267 Sum_probs=139.5
Q ss_pred CeecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC-
Q 030843 1 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE- 79 (170)
Q Consensus 1 f~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~- 79 (170)
|+|++|++|++||..+|++.+.++++.+++.|+.++++ ++++.+++++++.++.|++ + |++++||||||+
T Consensus 44 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~-------~-~~~~~lvaG~D~~ 114 (205)
T 1ryp_H 44 TRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKD-------N-LTAGIIVAGYDDK 114 (205)
T ss_dssp EEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTT-------T-CCEEEEEEEEETT
T ss_pred EEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhc-------C-ceEEEEEEEEecC
Confidence 57999999999999999999999999999999999999 9999999999999988764 2 899999999997
Q ss_pred CCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC
Q 030843 80 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 154 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~ 154 (170)
+||+||.+||+|++.++++.|+|+|++.++++||+.|+++||++||++++++||..+.+||. ++++++|++|+++
T Consensus 115 ~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~ 190 (205)
T 1ryp_H 115 NKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAA 190 (205)
T ss_dssp TEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT
T ss_pred CCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCC
Confidence 67999999999999999999999999999999999999999999999999999999999997 8999999999999
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.95 E-value=5.8e-28 Score=177.00 Aligned_cols=132 Identities=21% Similarity=0.272 Sum_probs=114.0
Q ss_pred Cee-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
|+| ++|++++++|..+|++.+.++++.+++.|+.+ .++.++++ .+ .++++. ..|||+++++++ |
T Consensus 35 ~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l-~~---~~~~~~---~~~~~~~~~lv~--D- 99 (171)
T 1m4y_A 35 RKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAAVEL-AK---DWRTDR---VLRRLEALLLVA--D- 99 (171)
T ss_dssp EEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHH-HH---HHHHCT---TGGGCCCEEEEE--C-
T ss_pred EEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHH-HH---HHHHhC---CCCceEEEEEEE--c-
Confidence 578 99999999999999999999999999998743 24555444 33 334333 567899999998 6
Q ss_pred CCCeEEEECCCCceeccc--EEEeCCCChhhhHHHHhhcc-CCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEE
Q 030843 80 NGPSLYYTDPSGTFWQCN--AKAIGSGSEGADSSLQEQYN-KDLTLQEAETIALSILKQVMEEKV-TPNNVDIARV 151 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii 151 (170)
||+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||. .+++++||..+.+||. ++++++|.++
T Consensus 100 -~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 100 -KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp -SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred -CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 89999999999999988 99999999999999999999 99996 7789999999999997 8999999864
No 47
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.95 E-value=6.3e-28 Score=178.23 Aligned_cols=133 Identities=21% Similarity=0.272 Sum_probs=115.2
Q ss_pred Cee-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
|+| ++|++|+++|..+|++.+.++++.+++.|+ + + +.+..+.+.+.++++. ..|||++++||| |
T Consensus 41 ~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~---~~~~~~~l~~~~~~~~---~~rp~~~~~lva--d- 105 (180)
T 2z3b_A 41 RKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N---LKRAAVELAKEWRSDK---VLRKLEAMLIVM--N- 105 (180)
T ss_dssp EEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C---HHHHHHHHHHHHHHCT---TGGGCCCCEEEE--C-
T ss_pred EEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C---hHHHHHHHHHHHHhhh---CcCcceEEEEEE--c-
Confidence 578 999999999999999999999999999987 3 2 2323333444455555 779999999999 4
Q ss_pred CCCeEEEECCCCceec--ccEEEeCCCChhhhHHHHhhccC---CCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEe
Q 030843 80 NGPSLYYTDPSGTFWQ--CNAKAIGSGSEGADSSLQEQYNK---DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVA 152 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~---~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~ 152 (170)
||+||.+||+|++.+ +++.|+|+|++++.++||+.|++ +||.+| ++++||..+.+||. ++++++|.+|+
T Consensus 106 -~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 106 -QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp -SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred -CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 799999999999998 49999999999999999999998 999999 47899999999997 89999999883
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.95 E-value=1.1e-27 Score=176.08 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=115.1
Q ss_pred Cee-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccceEEEEEEEEeC
Q 030843 1 MEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE 79 (170)
Q Consensus 1 f~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~v~~iiaG~d~ 79 (170)
|+| ++|++++++|..+|++.+.++++.+++.|+. +....+..+++.+ +++. ..||+ +++++|+|
T Consensus 35 ~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~~~~l~~~~---~~~~---~~r~~--~~~l~g~d- 99 (174)
T 1g3k_A 35 RRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKSAVELAKDW---RTDR---ALRKL--EAMLIVAD- 99 (174)
T ss_dssp EEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHH---HHST---TGGGC--CCEEEEEC-
T ss_pred EEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHH---Hhcc---CcCcc--eEEEEEEC-
Confidence 578 9999999999999999999999999999874 3444455555555 4443 56776 46777887
Q ss_pred CCCeEEEECCCCceeccc---EEEeCCCChhhhHHHHhhcc-CCCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEe
Q 030843 80 NGPSLYYTDPSGTFWQCN---AKAIGSGSEGADSSLQEQYN-KDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVA 152 (170)
Q Consensus 80 ~g~~L~~id~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~ 152 (170)
||+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||.+ +++++||..+.+||. ++++++|.+|+
T Consensus 100 -~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 100 -EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp -SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred -CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 89999999999999988 99999999999999999999 999954 799999999999997 89999999986
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=80.81 E-value=2.3 Score=28.35 Aligned_cols=48 Identities=8% Similarity=0.008 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhccc---C--CCCceEEEEEeCC----eEEcCHHHHHHHHHhC
Q 030843 123 QEAETIALSILKQVMEEK---V--TPNNVDIARVAPT----YHLYTPSEVEAVINRL 170 (170)
Q Consensus 123 ~ea~~l~~~~l~~~~~~d---~--~~~~~~i~ii~~~----~~~~~~~ei~~~~~~~ 170 (170)
++|++-+.+.+....... + ..+.+-|.+++++ +|++|++++-++.++|
T Consensus 41 ~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l 97 (117)
T 2hc5_A 41 AEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFYAAM 97 (117)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCChHHHHHHHHHH
Confidence 445555555554433221 2 3678899999998 8999999998887653
No 50
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=46.33 E-value=41 Score=21.00 Aligned_cols=47 Identities=4% Similarity=0.036 Sum_probs=37.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC---eEEcCHHHHHHHHH
Q 030843 117 NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVIN 168 (170)
Q Consensus 117 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~---~~~~~~~ei~~~~~ 168 (170)
.++++.++..+.+++.++.. .+..+.+.+++.+ +...+++|++..++
T Consensus 23 ~~~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd~EL~eAl~ 72 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCHHHHHHHHH
Confidence 45789899888887755532 4578999999987 89999999988765
No 51
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=41.76 E-value=5.3 Score=31.09 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=46.6
Q ss_pred CeEEEECCCCceec-ccEEEeCCCChhhhHHHHhhccCCCCHHHHH----------------HHHHHHHHHhhccc--CC
Q 030843 82 PSLYYTDPSGTFWQ-CNAKAIGSGSEGADSSLQEQYNKDLTLQEAE----------------TIALSILKQVMEEK--VT 142 (170)
Q Consensus 82 ~~L~~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~----------------~l~~~~l~~~~~~d--~~ 142 (170)
|..|-||+.|.+.. ++.+-.+.....+...|++....+|++.+++ +.+.++|..+..-- .+
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I~~RRSiR~F~~~~V~~e~l~~ileaA~~APS~~N 182 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMN 182 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHTSCCGGG
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHHHhhhccCCcCccccCHHHHHHHHHHHHhCcCcCC
Confidence 67899999999976 4445666677788888887766666666665 44555555554321 13
Q ss_pred CCceEEEEEeC
Q 030843 143 PNNVDIARVAP 153 (170)
Q Consensus 143 ~~~~~i~ii~~ 153 (170)
...+++.+|+.
T Consensus 183 ~Qpwrfivv~d 193 (322)
T 4eo3_A 183 NQPWRFVVVDE 193 (322)
T ss_dssp CCCCEEEEECC
T ss_pred CcCeEEEEEeC
Confidence 45566666654
No 52
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=39.21 E-value=15 Score=22.88 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=33.8
Q ss_pred EeCCCCeEEEECCCCc-eecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhc
Q 030843 77 SDENGPSLYYTDPSGT-FWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 138 (170)
Q Consensus 77 ~d~~g~~L~~id~~G~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 138 (170)
+|..|..| .|.|+|+ .+...|...|.......+ --|++|++||.+.+.++...+..
T Consensus 21 ~Dg~GL~L-~V~psG~K~w~~ryr~~Gk~~~~~LG-----~yp~~sL~~AR~~a~~~r~~l~~ 77 (88)
T 3jtz_A 21 SDSHGLYL-LVKPGGSRHWYLKYRISGKESRIALG-----AYPAISLSDARQQREGIRKMLAL 77 (88)
T ss_dssp ECSTTEEE-EECTTSCEEEEEEEEETTEEEEEEEE-----ETTTSCHHHHHHHHHHHHHHHTC
T ss_pred ecCCceEE-EEecCCCEEEEEEEEeCCeEEEEEeE-----CCCCCCHHHHHHHHHHHHHHHHc
Confidence 45444333 5678885 344555544432211111 12689999999999999888764
No 53
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=30.43 E-value=1.3e+02 Score=21.54 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=32.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC-----eEEcC
Q 030843 117 NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-----YHLYT 159 (170)
Q Consensus 117 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~-----~~~~~ 159 (170)
.+.+|+++|.+++..++..+.++ +..+-|.|++.. +.+++
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~---g~pV~IaVvD~~G~lla~~RmD 106 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD---GRHVSVAVVDRNGNTLVTLRGD 106 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETTSCEEEEEECT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc---CCCEEEEEEeCCCCEEEEEecC
Confidence 45799999999999999999886 336888999876 55554
No 54
>2lrg_A Uncharacterized protein; unknown function; NMR {Bacteroides vulgatus} PDB: 3u6g_A*
Probab=30.19 E-value=66 Score=20.81 Aligned_cols=33 Identities=33% Similarity=0.613 Sum_probs=26.5
Q ss_pred CCccceEEEEEEEEeCCCC-eEEEECCCCceecccE
Q 030843 64 MSRPFGVSLLIAGSDENGP-SLYYTDPSGTFWQCNA 98 (170)
Q Consensus 64 ~~rP~~v~~iiaG~d~~g~-~L~~id~~G~~~~~~~ 98 (170)
....|.+++.+++.+..|| .|| |..|.+....+
T Consensus 19 ~td~Fe~~~~fGa~n~~GpakLY--~e~GeYlGdSy 52 (126)
T 2lrg_A 19 DTDSFEVSVSIGGADKGGPAKLY--NDKGEYIGDSY 52 (126)
T ss_dssp SGGGEEEEEEEECEETTEECCEE--CTTSCEEESEE
T ss_pred CccceEEEEEEeeccCCCCceee--cCCCcEechhh
Confidence 4467899999999999884 688 88888877655
No 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=30.05 E-value=1.3e+02 Score=20.27 Aligned_cols=19 Identities=0% Similarity=0.001 Sum_probs=14.3
Q ss_pred ccceEEEEEEEEeCCCCeEE
Q 030843 66 RPFGVSLLIAGSDENGPSLY 85 (170)
Q Consensus 66 rP~~v~~iiaG~d~~g~~L~ 85 (170)
.-|+-+-++||-|. =|||.
T Consensus 54 dkYgkSGLLCG~DG-LPHLI 72 (154)
T 1qzv_F 54 XXXXXXXXXXXXXX-XXXXX 72 (154)
T ss_pred cccccccccccccc-ccccc
Confidence 45789999999973 27765
No 56
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=29.95 E-value=42 Score=18.79 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=22.8
Q ss_pred hhHHHHhhcc-CCCCH--HHHHHHHHHHHHHhhccc
Q 030843 108 ADSSLQEQYN-KDLTL--QEAETIALSILKQVMEEK 140 (170)
Q Consensus 108 ~~~~Le~~~~-~~~s~--~ea~~l~~~~l~~~~~~d 140 (170)
+..+|..... ..++. .|.+++|++||..+.+-+
T Consensus 9 Ii~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~ 44 (52)
T 4gof_A 9 IIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVT 44 (52)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCC
Confidence 3445554432 45665 479999999999998654
No 57
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=26.23 E-value=1.5e+02 Score=19.90 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 030843 14 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 53 (170)
Q Consensus 14 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~ 53 (170)
++.|--.+++++ +.|...++..+++..|.+.+...+
T Consensus 62 LTe~HWeVI~fl----R~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 62 LTEEHWDIINFL----REYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CCHHHHHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH----HHHHHHHCCCChHHHHHHHHHHHh
Confidence 344555666666 677888999999999999885554
No 58
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=25.81 E-value=1.4e+02 Score=19.49 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 030843 14 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 53 (170)
Q Consensus 14 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~ 53 (170)
++.|--.+++++ +.|...++..+++..|.+.+...+
T Consensus 46 LTe~HW~VI~fl----R~~Y~e~~~~P~iR~l~K~~~~~~ 81 (115)
T 1sau_A 46 LTEEHWKIIRYL----RDYFIKYGVAPPVRMLVKHCKKEV 81 (115)
T ss_dssp CCHHHHHHHHHH----HHHHHHHSSCCCHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHH----HHHHHHHCCCCcHHHHHHHHHHHh
Confidence 455666777776 677788999999999999884443
No 59
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=25.25 E-value=1.1e+02 Score=20.63 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCCceEEEEEeCC
Q 030843 118 KDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 154 (170)
Q Consensus 118 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~~~i~ii~~~ 154 (170)
+.+|.++|.+++..+...+.++ +..+-|.|++..
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~---g~~v~IaVvD~~ 43 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI---NVAVVFSVVDRG 43 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT---TCCCEEEEEETT
T ss_pred cCCCHHHHHHHHHHHHHHHHHc---CCCEEEEEEECC
Confidence 3589999999999999999875 447889999865
No 60
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=24.95 E-value=38 Score=19.52 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=19.5
Q ss_pred EeCCCChhhhHHHHhhc--cCCCCHHHHHHHHHH
Q 030843 100 AIGSGSEGADSSLQEQY--NKDLTLQEAETIALS 131 (170)
Q Consensus 100 a~G~g~~~~~~~Le~~~--~~~~s~~ea~~l~~~ 131 (170)
+.|+....+...+++.. .++.+.++.++.+.+
T Consensus 26 aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk 59 (62)
T 1ixs_A 26 ALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 59 (62)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 45777777777776653 345676666555443
No 61
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=24.79 E-value=62 Score=19.08 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=20.3
Q ss_pred hhhhHHHHhhccC-CCCHHHHHHHHH
Q 030843 106 EGADSSLQEQYNK-DLTLQEAETIAL 130 (170)
Q Consensus 106 ~~~~~~Le~~~~~-~~s~~ea~~l~~ 130 (170)
+.++-.|..+|++ ++|+-|.++.|+
T Consensus 20 PsAYyLL~~~ykkg~FsL~ELiKFAk 45 (75)
T 2kxe_A 20 PSAYYLLVGHFNEGKFSLIELIKFAK 45 (75)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred chHHHHHHHHhhcccccHHHHHHHHH
Confidence 4566788888887 899999998875
No 62
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=23.66 E-value=1.2e+02 Score=17.95 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcccC-CCCceEEEEEeCC
Q 030843 119 DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 154 (170)
Q Consensus 119 ~~s~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ii~~~ 154 (170)
.|+.+||+..+.+.|..+..+.- ....-.+.||+-.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~Gk 43 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGR 43 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 58999999999998888764100 1223356677755
No 63
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=23.32 E-value=29 Score=22.44 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=33.4
Q ss_pred EeCCCCeEEEECCCCc-eecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHHHhhc
Q 030843 77 SDENGPSLYYTDPSGT-FWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 138 (170)
Q Consensus 77 ~d~~g~~L~~id~~G~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 138 (170)
+|..|..| .|.|+|+ .+.+.|...|.......+ --|.+|+.+|.+.+.++...+..
T Consensus 21 ~Dg~GL~L-~V~psG~K~w~~rYr~~GK~~~~~LG-----~yp~~SLa~AR~~a~~~r~~l~~ 77 (108)
T 3ju0_A 21 TDGFGMHL-LVHPNGSKYWRLSYRFEKKQRLLALG-----VYPAVSLADARQRRDEAKKLLAA 77 (108)
T ss_dssp EEETTEEE-EECTTSCEEEEEEEEETTEEEEEEEE-----EETTSCHHHHHHHHHHHHHHHHT
T ss_pred ecCCceEE-EEEcCCCEEEEEEEEEcCceEEEecC-----CCCCCCHHHHHHHHHHHHHHHHc
Confidence 34444443 4678875 344555544432211111 12689999999999998887764
No 64
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=22.96 E-value=2e+02 Score=23.12 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhc-ccC-CCCceEEEEEeCCeEEcCHHHHHHHHH
Q 030843 122 LQEAETIALSILKQVME-EKV-TPNNVDIARVAPTYHLYTPSEVEAVIN 168 (170)
Q Consensus 122 ~~ea~~l~~~~l~~~~~-~d~-~~~~~~i~ii~~~~~~~~~~ei~~~~~ 168 (170)
.+++...+.++|..-.+ +.- -...+.|. +-+.++.+..+|++.+.+
T Consensus 223 ~~~l~~~l~~aL~~y~~~~~~~~P~~~rIi-i~gq~~~v~~~Ei~~i~~ 270 (427)
T 2w42_A 223 LTYLKSTIKKVVYGFKKSNPDWDVEKLTLH-VSGKRPKMKDGETKILKE 270 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCCSEEEEE-EESSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEEE-EEeecccccHHHHHHHHH
Confidence 45566667777777655 421 23445553 333377777888887754
No 65
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=22.20 E-value=68 Score=25.40 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=41.6
Q ss_pred EEEEEeCCCCeEEEECCCCceecccEEEeCCCChhhhHHHHhhccCCCCHHHHHHHHHHHHH
Q 030843 73 LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILK 134 (170)
Q Consensus 73 iiaG~d~~g~~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~ 134 (170)
||..+-. |-++..+|..|.+.....+++|.|.- .+... ......+.+|..+++.+.=.
T Consensus 178 llVnIGs-GvSiikv~~~~~f~rvgG~siGGGTf--lGL~~-lLtg~~~~dEl~~lA~~Gd~ 235 (360)
T 2i7n_A 178 LLVNMGS-GVSILAVYSKDNYKRVTGTSLGGGTF--LGLCC-LLTGCETFEEALEMAAKGDS 235 (360)
T ss_dssp EEEEESS-SEEEEEEEETTEEEEEEEESCSHHHH--HHHHH-HHHCCCSHHHHHHHHHHCCG
T ss_pred EEEEeCC-CcEEEEEcCCCCEEEeccccCccHhH--HHHHH-HHhCCCCHHHHHHHHHcCCC
Confidence 4555643 66899999999998888899888773 34443 33345799999999876433
No 66
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=21.32 E-value=1e+02 Score=19.53 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=15.6
Q ss_pred EEEEeCC---eEEcCHHHHHHH
Q 030843 148 IARVAPT---YHLYTPSEVEAV 166 (170)
Q Consensus 148 i~ii~~~---~~~~~~~ei~~~ 166 (170)
|.+.+++ |+.+++++|+..
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArl 52 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARL 52 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHH
T ss_pred eEeecCCCCEEEecCHHHHHHH
Confidence 6688764 999999999875
No 67
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=21.27 E-value=75 Score=20.55 Aligned_cols=19 Identities=26% Similarity=0.095 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 030843 119 DLTLQEAETIALSILKQVM 137 (170)
Q Consensus 119 ~~s~~ea~~l~~~~l~~~~ 137 (170)
+++.|||++.|++.|++..
T Consensus 21 ~~~~EeALe~ar~~L~~g~ 39 (116)
T 2gdt_A 21 GDSVEEALSEAREHLKNGT 39 (116)
T ss_dssp CSSHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHhhcCC
Confidence 7899999999999999865
No 68
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=20.09 E-value=76 Score=19.10 Aligned_cols=33 Identities=6% Similarity=0.152 Sum_probs=22.8
Q ss_pred hhHHHHhhcc-CCCCH--HHHHHHHHHHHHHhhccc
Q 030843 108 ADSSLQEQYN-KDLTL--QEAETIALSILKQVMEEK 140 (170)
Q Consensus 108 ~~~~Le~~~~-~~~s~--~ea~~l~~~~l~~~~~~d 140 (170)
+..+|..... ..++. .|.+++|++||..+.+-+
T Consensus 14 Ii~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~ 49 (74)
T 2lxb_A 14 IVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFE 49 (74)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 4455555433 45665 479999999999998653
Done!