Query 030844
Match_columns 170
No_of_seqs 143 out of 1097
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02364 L-ascorbate peroxidas 100.0 7.5E-57 1.6E-61 371.9 15.4 169 1-170 1-170 (250)
2 PLN02879 L-ascorbate peroxidas 100.0 9.5E-57 2.1E-61 371.0 16.0 169 1-170 2-170 (251)
3 PLN02608 L-ascorbate peroxidas 100.0 2.7E-55 5.8E-60 368.1 15.8 165 5-170 3-167 (289)
4 cd00691 ascorbate_peroxidase A 100.0 2.4E-52 5.2E-57 345.8 15.4 150 20-170 17-169 (253)
5 PLN03030 cationic peroxidase; 100.0 3.6E-52 7.7E-57 353.7 9.8 154 2-170 31-194 (324)
6 cd00693 secretory_peroxidase H 100.0 5.1E-51 1.1E-55 344.8 10.9 154 2-170 8-174 (298)
7 PF00141 peroxidase: Peroxidas 100.0 1.7E-49 3.7E-54 324.9 7.5 146 12-170 1-154 (230)
8 cd00314 plant_peroxidase_like 100.0 2.6E-44 5.6E-49 297.4 13.2 153 11-170 2-167 (255)
9 cd00692 ligninase Ligninase an 100.0 5E-44 1.1E-48 304.7 14.2 148 20-169 21-180 (328)
10 cd00649 catalase_peroxidase_1 100.0 1.7E-44 3.8E-49 312.8 11.0 155 15-170 43-249 (409)
11 cd08201 plant_peroxidase_like_ 100.0 3.2E-44 7E-49 296.9 8.2 137 28-170 37-176 (264)
12 TIGR00198 cat_per_HPI catalase 100.0 5.3E-42 1.1E-46 313.6 10.4 155 15-170 53-258 (716)
13 PRK15061 catalase/hydroperoxid 100.0 2.1E-40 4.6E-45 302.0 11.0 155 15-170 55-262 (726)
14 cd08200 catalase_peroxidase_2 100.0 5.4E-37 1.2E-41 256.9 13.2 152 14-169 14-198 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 6.7E-33 1.5E-37 253.9 14.1 154 12-169 430-611 (716)
16 PRK15061 catalase/hydroperoxid 100.0 6.2E-32 1.3E-36 246.7 13.8 151 15-169 440-623 (726)
17 COG0376 KatG Catalase (peroxid 100.0 8.3E-30 1.8E-34 225.2 8.5 154 15-169 68-273 (730)
18 COG0376 KatG Catalase (peroxid 99.5 5.6E-15 1.2E-19 131.6 6.2 146 13-162 448-619 (730)
19 PF08383 Maf_N: Maf N-terminal 44.7 15 0.00032 21.5 1.3 15 147-161 19-34 (35)
20 PRK12346 transaldolase A; Prov 44.4 20 0.00043 31.0 2.6 86 77-165 138-241 (316)
21 PRK12309 transaldolase/EF-hand 43.8 25 0.00055 31.2 3.3 86 77-165 143-246 (391)
22 PTZ00411 transaldolase-like pr 43.5 22 0.00048 30.9 2.8 58 107-165 179-252 (333)
23 cd00957 Transaldolase_TalAB Tr 38.5 33 0.00072 29.6 3.1 86 77-165 137-240 (313)
24 PRK05269 transaldolase B; Prov 35.0 23 0.00049 30.6 1.5 58 107-165 169-242 (318)
25 KOG0400 40S ribosomal protein 34.3 16 0.00035 27.8 0.4 33 136-169 31-64 (151)
26 TIGR00874 talAB transaldolase. 32.2 43 0.00093 29.0 2.8 58 107-165 167-240 (317)
27 cd00439 Transaldolase Transald 31.7 19 0.0004 30.0 0.5 87 76-165 127-231 (252)
28 PLN02438 inositol-3-phosphate 30.6 1.3E+02 0.0028 27.8 5.7 120 13-157 203-333 (510)
29 PF10937 DUF2638: Protein of u 29.7 52 0.0011 24.1 2.5 29 131-160 80-108 (112)
30 PF09388 SpoOE-like: Spo0E lik 26.0 92 0.002 18.6 2.8 20 140-160 12-31 (45)
31 PF04225 OapA: Opacity-associa 25.7 64 0.0014 22.2 2.3 25 138-163 10-34 (85)
32 cd02642 R3H_encore_like R3H do 24.9 75 0.0016 20.4 2.4 34 14-47 3-43 (63)
33 PF00043 GST_C: Glutathione S- 24.8 1.1E+02 0.0023 20.1 3.2 38 72-109 31-73 (95)
34 TIGR00875 fsa_talC_mipB fructo 21.9 47 0.001 26.9 1.1 80 76-165 89-182 (213)
35 COG1913 Predicted Zn-dependent 20.7 39 0.00084 27.0 0.4 16 154-170 126-141 (181)
No 1
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=7.5e-57 Score=371.88 Aligned_cols=169 Identities=78% Similarity=1.287 Sum_probs=165.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccccCchHHHHHH
Q 030844 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (170)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (170)
|.|.||.+.+.+++++++++++|++++.++.++|.||||+||||++||.....|||||||++.+|+++++|.+|.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHHHhhCCCCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh-cCCChhhHHHh
Q 030844 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQ-MGLSDKDIVAL 159 (170)
Q Consensus 81 i~~ik~~~~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~-~Gl~~~e~VaL 159 (170)
|++||+++++|||||||+||+++||+++|||.|+|++||+|++++.++++||.|+.+++++++.| +. +|||++|||||
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F-~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVF-AKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHH-HHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999988889999999999999999 75 69999999999
Q ss_pred hhhhhhhccCC
Q 030844 160 SGGHTLGALDW 170 (170)
Q Consensus 160 ~GaHtiG~~hc 170 (170)
+||||||++||
T Consensus 160 sGaHTiG~~hc 170 (250)
T PLN02364 160 SGAHTLGRCHK 170 (250)
T ss_pred ecceeeccccC
Confidence 99999999999
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=9.5e-57 Score=371.01 Aligned_cols=169 Identities=74% Similarity=1.249 Sum_probs=165.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccccCchHHHHHH
Q 030844 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (170)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (170)
|.+.||.+.+.++++++.+|++|.++++++.++|.+|||+||||+|||..+++||+||||+|.+|+++++|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHhhCCCCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhh
Q 030844 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (170)
Q Consensus 81 i~~ik~~~~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~ 160 (170)
|++||++++.|||||||+||+++||+.+|||.|+|++||+|+..+.++++||.|+.+++++++.| +++|||++|||||+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F-~~~Gl~~~dlVALs 160 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVF-GRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999988999999999999999999 99999999999999
Q ss_pred hhhhhhccCC
Q 030844 161 GGHTLGALDW 170 (170)
Q Consensus 161 GaHtiG~~hc 170 (170)
||||||++||
T Consensus 161 GaHTiG~ah~ 170 (251)
T PLN02879 161 GGHTLGRCHK 170 (251)
T ss_pred cccccccccc
Confidence 9999999999
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2.7e-55 Score=368.09 Aligned_cols=165 Identities=65% Similarity=1.065 Sum_probs=161.4
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccccCchHHHHHHHHHH
Q 030844 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (170)
Q Consensus 5 cp~~~~~v~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (170)
.|.++..|-++|+.+|+||+++++|+.++|.+|||+||||++||.+++.|||||||++.+|+++++|.+|.+++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HhhCCCCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhhhhhh
Q 030844 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (170)
Q Consensus 85 k~~~~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHt 164 (170)
|+++|+|||||||+||+++||+++|||.|+|++||+|+.++.++++||.|+.+++++++.| +++|||++|||||+||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F-~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVF-YRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHH-HHcCCCHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999988889999999999999999 899999999999999999
Q ss_pred hhccCC
Q 030844 165 LGALDW 170 (170)
Q Consensus 165 iG~~hc 170 (170)
||++||
T Consensus 162 iG~ahc 167 (289)
T PLN02608 162 LGRAHP 167 (289)
T ss_pred cccccc
Confidence 999999
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2.4e-52 Score=345.81 Aligned_cols=150 Identities=59% Similarity=1.050 Sum_probs=141.4
Q ss_pred HHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccccCchHHHHHHHHHHHhhCCCCcHHHHHHH
Q 030844 20 KRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQL 99 (170)
Q Consensus 20 ~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ik~~~~~VS~ADiial 99 (170)
|+.+++.+.++.++|.+|||+||||++||++.+.||+||++++.+|+++++|.+|.+++++|++||+++|+|||||||+|
T Consensus 17 ~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~~~VScADilal 96 (253)
T cd00691 17 RNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKYPDISYADLWQL 96 (253)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 33444444499999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhhhhhhhhccCC
Q 030844 100 AGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGALDW 170 (170)
Q Consensus 100 Aa~~av~~~GGP~~~v~~GR~D~~~~~---~~~~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHtiG~~hc 170 (170)
|+++||+.+|||.|+|++||+|+.++. ++++||.|+.++++++++| +++|||++|||||+||||||++||
T Consensus 97 Aar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~d~VaLsGaHTiG~a~c 169 (253)
T cd00691 97 AGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVF-YRMGFNDQEIVALSGAHTLGRCHK 169 (253)
T ss_pred HHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHH-HhcCCCHHHHHHhcccceeecccc
Confidence 999999999999999999999999885 6788999999999999999 899999999999999999999999
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=3.6e-52 Score=353.69 Aligned_cols=154 Identities=29% Similarity=0.416 Sum_probs=144.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccH---HHhhccccCchHHHH
Q 030844 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLDIAV 78 (170)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~---~E~~~~~N~gl~~~~ 78 (170)
++|||++|+||+++|+++ +.+|+.++|++|||+|||||+ +||||||++. .|++.++|.+| ++|
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 579999999999999999 999999999999999999998 8888888873 69999999988 799
Q ss_pred HHHHHHHhhC----C-CCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHhcCC
Q 030844 79 RLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP--PQEGRLPDAKQGNDHLRQVFGAQMGL 151 (170)
Q Consensus 79 ~~i~~ik~~~----~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~--~~~~~lP~~~~~~~~l~~~F~~~~Gl 151 (170)
++|+.||+++ | +|||||||++|+|+||.++|||.|+|++||+|+.+| ...++||.|+.+++++++.| +++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F-~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF-AAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH-HHcCC
Confidence 9999999864 6 899999999999999999999999999999999886 33458999999999999999 89999
Q ss_pred ChhhHHHhhhhhhhhccCC
Q 030844 152 SDKDIVALSGGHTLGALDW 170 (170)
Q Consensus 152 ~~~e~VaL~GaHtiG~~hc 170 (170)
+.+|||+||||||||++||
T Consensus 176 ~~~DlVaLsGAHTiG~ahC 194 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTAC 194 (324)
T ss_pred CHHHheeeeeccccceeee
Confidence 9999999999999999999
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5.1e-51 Score=344.77 Aligned_cols=154 Identities=29% Similarity=0.424 Sum_probs=144.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCcccc------HHHhhccccCchH
Q 030844 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL------AAEQAHSANNGLD 75 (170)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~------~~E~~~~~N~gl~ 75 (170)
.+|||++|++|+++|+++ +..++.++|++|||+|||||+ +||||||++ .+|+++++|.++
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 579999999999999998 999999999999999999998 789999976 469999999998
Q ss_pred HHHHHHHHHHhhC----C-CCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHh
Q 030844 76 IAVRLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ--EGRLPDAKQGNDHLRQVFGAQ 148 (170)
Q Consensus 76 ~~~~~i~~ik~~~----~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~--~~~lP~~~~~~~~l~~~F~~~ 148 (170)
++|++|++||+++ | .|||||||+||+++||+++|||.|+|++||+|+..+.+ .++||.|+.+++++++.| ++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~ 152 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLF-AS 152 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHH-HH
Confidence 7999999999865 6 89999999999999999999999999999999987633 368999999999999999 89
Q ss_pred cCCChhhHHHhhhhhhhhccCC
Q 030844 149 MGLSDKDIVALSGGHTLGALDW 170 (170)
Q Consensus 149 ~Gl~~~e~VaL~GaHtiG~~hc 170 (170)
+||+++|||||+||||||++||
T Consensus 153 ~G~~~~d~VaL~GaHTiG~~hc 174 (298)
T cd00693 153 KGLTVTDLVALSGAHTIGRAHC 174 (298)
T ss_pred cCCCHHHheeecccceeeeeec
Confidence 9999999999999999999999
No 7
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.7e-49 Score=324.90 Aligned_cols=146 Identities=37% Similarity=0.618 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCcccc-HHHhhccccCchHHHHHHHHHHHhhC--
Q 030844 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQF-- 88 (170)
Q Consensus 12 v~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~-~~E~~~~~N~gl~~~~~~i~~ik~~~-- 88 (170)
||++|+++ +..++.++|+||||+||||++| |||||||++ .+|+++++|.+|.+++++|++||+++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 56777766 7779999999999999999998 999999965 88999999999988999999999986
Q ss_pred --C-CCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHhcCCChhhHHHhhhhh
Q 030844 89 --P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGH 163 (170)
Q Consensus 89 --~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~~~--~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~GaH 163 (170)
| +|||||||+||+++||+.+|||.|+|++||+|+..+.+.+ +||.|+.++++++++| +++|||++|||||+|||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFF-ARKGLSAEEMVALSGAH 147 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHH-HHTT--HHHHHHHHGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhh-hccccchhhhcceeccc
Confidence 4 6999999999999999999999999999999999996643 5999999999999999 99999999999999999
Q ss_pred hhhccCC
Q 030844 164 TLGALDW 170 (170)
Q Consensus 164 tiG~~hc 170 (170)
|||++||
T Consensus 148 TiG~~~c 154 (230)
T PF00141_consen 148 TIGRAHC 154 (230)
T ss_dssp GSTEESG
T ss_pred cccccee
Confidence 9999998
No 8
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.6e-44 Score=297.45 Aligned_cols=153 Identities=45% Similarity=0.688 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCC-CCCCCCCccccHHHhhccccCchHHHHHHHHHHHhhCC
Q 030844 11 DYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP 89 (170)
Q Consensus 11 ~v~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~-~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ik~~~~ 89 (170)
.|+..|++. +.+++.+++++|||+||||++|+.+. ..|||||||++.+|+++++|.+|.+++++|++||++++
T Consensus 2 ~v~~~l~~~------~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDL------ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHH------HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcC
Confidence 355666555 56689999999999999999999887 78999999999999999999999899999999999995
Q ss_pred ---CCcHHHHHHHhhhhhhhcc--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHh
Q 030844 90 ---TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL 159 (170)
Q Consensus 90 ---~VS~ADiialAa~~av~~~--GGP~~~v~~GR~D~~-----~~~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL 159 (170)
+|||||||++|+++||+.+ |||.|+|++||+|+. .+.|.+++|.+..+++++++.| .++||+++|||||
T Consensus 76 ~~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL 154 (255)
T cd00314 76 GGNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKF-KRMGLSPSELVAL 154 (255)
T ss_pred CCCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHH-HHcCCCHHHHHhh
Confidence 7999999999999999999 999999999999998 4567788999999999999999 8999999999999
Q ss_pred h-hhhhh-hccCC
Q 030844 160 S-GGHTL-GALDW 170 (170)
Q Consensus 160 ~-GaHti-G~~hc 170 (170)
+ ||||| |++||
T Consensus 155 ~~GaHti~G~~~~ 167 (255)
T cd00314 155 SAGAHTLGGKNHG 167 (255)
T ss_pred ccCCeeccCcccC
Confidence 9 99999 99999
No 9
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5e-44 Score=304.66 Aligned_cols=148 Identities=34% Similarity=0.574 Sum_probs=132.3
Q ss_pred HHHhhh-hhhcCCc---hHHHHHHHhhhccccCC-----CCCCCCCCCccccH--HHhhccccCchHHHHHHHHHHHhhC
Q 030844 20 KRKLRG-FIAEKNC---APLMLRIAWHSAGTYDV-----KTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEPFKEQF 88 (170)
Q Consensus 20 ~~~~~~-~~~~~~~---a~~~lRl~FHDc~~~d~-----s~~~gG~dgsi~~~--~E~~~~~N~gl~~~~~~i~~ik~~~ 88 (170)
+.||++ +..+..| ++.+|||+||||++||. ..+.|||||||++. .|+++++|.||...++.|+++++++
T Consensus 21 ~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e~~ 100 (328)
T cd00692 21 LDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQKH 100 (328)
T ss_pred HHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 444454 4446665 55699999999999994 56789999999763 5999999999998888888888888
Q ss_pred CCCcHHHHHHHhhhhhhh-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhhhhhhhhc
Q 030844 89 PTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGA 167 (170)
Q Consensus 89 ~~VS~ADiialAa~~av~-~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHtiG~ 167 (170)
+ |||||||+||+++||+ ..|||.|+|++||+|+..+.++++||.|+.+++++++.| +++|||++|||+|+||||||+
T Consensus 101 c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F-~~~Gf~~~E~VaLsGAHTiG~ 178 (328)
T cd00692 101 N-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARF-ADAGFSPDELVALLAAHSVAA 178 (328)
T ss_pred C-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHhhhcccccccc
Confidence 6 9999999999999999 569999999999999999999999999999999999999 899999999999999999999
Q ss_pred cC
Q 030844 168 LD 169 (170)
Q Consensus 168 ~h 169 (170)
+|
T Consensus 179 a~ 180 (328)
T cd00692 179 QD 180 (328)
T ss_pred cC
Confidence 87
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.7e-44 Score=312.79 Aligned_cols=155 Identities=40% Similarity=0.658 Sum_probs=145.4
Q ss_pred HHHHHHHHhhhhhhcC---------CchHHHHHHHhhhccccCCCCCCCCCC-CccccHHHhhccccCchHHHHHHHHHH
Q 030844 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (170)
Q Consensus 15 ~v~~~~~~~~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (170)
.++++|+||++++++. .++|.+|||+|||++|||.++++||+| |+|||.+|.+++.|.||++++++|++|
T Consensus 43 d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pi 122 (409)
T cd00649 43 DLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPI 122 (409)
T ss_pred cHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHHH
Confidence 4888999999999864 799999999999999999999999998 699999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCC-------------------------------------
Q 030844 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------- 126 (170)
Q Consensus 85 k~~~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~------------------------------------- 126 (170)
|++|| .||+||+|+||+.+|||.+|||.|+|.+||.|...+.
T Consensus 123 k~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv 202 (409)
T cd00649 123 KQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYV 202 (409)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhcccccc
Confidence 99997 7999999999999999999999999999999996531
Q ss_pred -CCC--CCCCCCCCHHHHHHHHHHhcCCChhhHHHh-hhhhhhhccCC
Q 030844 127 -QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGALDW 170 (170)
Q Consensus 127 -~~~--~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL-~GaHtiG~~hc 170 (170)
|++ .+|+|..++.+|++.| .+||||++||||| +||||||++||
T Consensus 203 ~Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc 249 (409)
T cd00649 203 NPEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHG 249 (409)
T ss_pred CCCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCc
Confidence 334 6999999999999999 8999999999999 59999999999
No 11
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.2e-44 Score=296.89 Aligned_cols=137 Identities=31% Similarity=0.513 Sum_probs=124.7
Q ss_pred hcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccccCchH--HHHHHHHHHHhhCCCCcHHHHHHHhhhhhh
Q 030844 28 AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGV 105 (170)
Q Consensus 28 ~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~--~~~~~i~~ik~~~~~VS~ADiialAa~~av 105 (170)
.++..++.||||+||||++||...+.|||||||++ |..++||.|+. ..++.++.|+. +.||||||||||+++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999998 67889999875 34555665533 48999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhhh-hhhhhccCC
Q 030844 106 EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSG-GHTLGALDW 170 (170)
Q Consensus 106 ~~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~G-aHtiG~~hc 170 (170)
+.+|||.|+|++||+|++.+.+.+ ||.|+.+++++++.| +++||+++|||+|+| |||||++||
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc 176 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESF-RRQGFSTSEMIALVACGHTLGGVHS 176 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHH-HHcCCChHHHheeecCCeeeeeccc
Confidence 999999999999999999998876 999999999999999 899999999999995 999999999
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5.3e-42 Score=313.61 Aligned_cols=155 Identities=38% Similarity=0.623 Sum_probs=144.0
Q ss_pred HHHHHHHHhhhhhhcC---------CchHHHHHHHhhhccccCCCCCCCCCC-CccccHHHhhccccCchHHHHHHHHHH
Q 030844 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (170)
Q Consensus 15 ~v~~~~~~~~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (170)
.++++|+||++++++. .++|.+|||+||+++|||.++++||+| |+|||.||.+|+.|.+|++++.+|++|
T Consensus 53 d~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pI 132 (716)
T TIGR00198 53 DLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPI 132 (716)
T ss_pred cHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHH
Confidence 4777899999999874 699999999999999999999999996 799999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCC-------------------------------------
Q 030844 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------- 126 (170)
Q Consensus 85 k~~~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~------------------------------------- 126 (170)
|++|| .|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 133 k~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvn 212 (716)
T TIGR00198 133 KKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVN 212 (716)
T ss_pred HHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccC
Confidence 99998 8999999999999999999999999999999994321
Q ss_pred CCC--CCCCCCCCHHHHHHHHHHhcCCChhhHHHhh-hhhhhhccCC
Q 030844 127 QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGALDW 170 (170)
Q Consensus 127 ~~~--~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~hc 170 (170)
|++ .+|.|..++.+|++.| .+||||++|||||+ ||||||++||
T Consensus 213 peg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc 258 (716)
T TIGR00198 213 PEGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHG 258 (716)
T ss_pred cccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCC
Confidence 222 6999999999999999 89999999999995 9999999999
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.1e-40 Score=302.00 Aligned_cols=155 Identities=39% Similarity=0.645 Sum_probs=143.7
Q ss_pred HHHHHHHHhhhhhhcC---------CchHHHHHHHhhhccccCCCCCCCCCC-CccccHHHhhccccCchHHHHHHHHHH
Q 030844 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (170)
Q Consensus 15 ~v~~~~~~~~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (170)
.++++|+||++++++. .++|.+|||+||+++|||.++++||+| |+|||.+|.+|+.|.+|++++++|++|
T Consensus 55 d~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~pi 134 (726)
T PRK15061 55 DLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLWPI 134 (726)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHHHH
Confidence 5888999999999875 799999999999999999999999997 799999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCCC------------------------------------
Q 030844 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------------ 127 (170)
Q Consensus 85 k~~~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~------------------------------------ 127 (170)
|++|| .||+||+|+||+.+|||.+|||.|+|.+||.|...+..
T Consensus 135 k~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliy 214 (726)
T PRK15061 135 KQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIY 214 (726)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhcccee
Confidence 99997 79999999999999999999999999999999865321
Q ss_pred ---C--CCCCCCCCCHHHHHHHHHHhcCCChhhHHHhh-hhhhhhccCC
Q 030844 128 ---E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGALDW 170 (170)
Q Consensus 128 ---~--~~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~hc 170 (170)
+ ..+|+|..++.++++.| .+||||++|||||+ ||||||++||
T Consensus 215 vnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHc 262 (726)
T PRK15061 215 VNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHG 262 (726)
T ss_pred cCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCC
Confidence 1 12799999999999999 89999999999995 9999999999
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=5.4e-37 Score=256.86 Aligned_cols=152 Identities=30% Similarity=0.451 Sum_probs=132.1
Q ss_pred HHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCc-cccHHHhhccccCc--hHHHHHHHHHHHhhCC-
Q 030844 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP- 89 (170)
Q Consensus 14 ~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~g--l~~~~~~i~~ik~~~~- 89 (170)
+.|..+|++ ++....+.+.+|||+||++.|||.++++||+||+ |||.||++|+.|.+ |.+++.+|++||++||
T Consensus 14 ~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 14 ADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 344444544 4566679999999999999999999999999985 99999999999999 9999999999999997
Q ss_pred ------CCcHHHHHHHhhhhhhhccCC-----CCCCCCCCCCCCCCCCC--C---CCCCCCCC------------CHHHH
Q 030844 90 ------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPPQ--E---GRLPDAKQ------------GNDHL 141 (170)
Q Consensus 90 ------~VS~ADiialAa~~av~~~GG-----P~~~v~~GR~D~~~~~~--~---~~lP~~~~------------~~~~l 141 (170)
.||+||+|+||+.+|||.+|| |.|+|.+||.|.+.+.. + .++|.++. ..++|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 799999999999999999999 99999999999987632 1 24564432 34789
Q ss_pred HHHHHHhcCCChhhHHHhhhhh-hhhccC
Q 030844 142 RQVFGAQMGLSDKDIVALSGGH-TLGALD 169 (170)
Q Consensus 142 ~~~F~~~~Gl~~~e~VaL~GaH-tiG~~h 169 (170)
++.| .+||||++|||||+||| ++|.+|
T Consensus 171 rd~f-~rlglsd~EmvaL~Gg~r~lG~~~ 198 (297)
T cd08200 171 VDKA-QLLTLTAPEMTVLVGGLRVLGANY 198 (297)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCC
Confidence 9999 99999999999999997 799887
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=6.7e-33 Score=253.90 Aligned_cols=154 Identities=28% Similarity=0.442 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCc-cccHHHhhcccc--CchHHHHHHHHHHHhhC
Q 030844 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF 88 (170)
Q Consensus 12 v~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N--~gl~~~~~~i~~ik~~~ 88 (170)
|++.|..+|.+ ++..+-+.+.||||+||++.|||.++++||+||+ |||.||++|+.| .+|.+++++|++||++|
T Consensus 430 v~~di~~lk~~---i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f 506 (716)
T TIGR00198 430 SEGDIKELKQQ---ILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEF 506 (716)
T ss_pred HHHHHHHHHHH---HHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHc
Confidence 35566555543 3567778999999999999999999999999995 999999999999 89999999999999999
Q ss_pred C--CCcHHHHHHHhhhhhhhcc---CCC--CCCCCCCCCCCCCCC--CCCCCC---CC------------CCCHHHHHHH
Q 030844 89 P--TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPP--QEGRLP---DA------------KQGNDHLRQV 144 (170)
Q Consensus 89 ~--~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~~~--~~~~lP---~~------------~~~~~~l~~~ 144 (170)
| .||+||+|+||+.+|||.+ ||| .++|.+||.|++... +++..| .+ ......|++.
T Consensus 507 ~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~ 586 (716)
T TIGR00198 507 AKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDK 586 (716)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHH
Confidence 9 8999999999999999998 897 589999999998762 222222 11 1235678999
Q ss_pred HHHhcCCChhhHHHhhhh-hhhhccC
Q 030844 145 FGAQMGLSDKDIVALSGG-HTLGALD 169 (170)
Q Consensus 145 F~~~~Gl~~~e~VaL~Ga-HtiG~~h 169 (170)
| .++|||++|||||+|| |++|++|
T Consensus 587 a-~~lglt~~EmvaL~Gg~r~lG~~~ 611 (716)
T TIGR00198 587 A-QLLTLTAPEMTVLIGGMRVLGANH 611 (716)
T ss_pred H-HhCCCChHHHHheecchhhccccC
Confidence 9 9999999999999999 5999988
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.97 E-value=6.2e-32 Score=246.71 Aligned_cols=151 Identities=30% Similarity=0.462 Sum_probs=130.4
Q ss_pred HHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCc-cccHHHhhccccC--chHHHHHHHHHHHhhC---
Q 030844 15 AVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRLLEPFKEQF--- 88 (170)
Q Consensus 15 ~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~--gl~~~~~~i~~ik~~~--- 88 (170)
.|..+|.+ ++...-..+.|||++||++.|||.++++||+||+ |||.||++|+.|. +|.+++++|++||++|
T Consensus 440 di~~lk~~---i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~ 516 (726)
T PRK15061 440 DIAALKAK---ILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNAA 516 (726)
T ss_pred HHHHHHHH---HHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhhc
Confidence 44444443 4566778999999999999999999999999985 9999999999999 9999999999999998
Q ss_pred ----CCCcHHHHHHHhhhhhhhcc---CC--CCCCCCCCCCCCCCCC--CC---CCCCCCCC------------CHHHHH
Q 030844 89 ----PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPP--QE---GRLPDAKQ------------GNDHLR 142 (170)
Q Consensus 89 ----~~VS~ADiialAa~~av~~~---GG--P~~~v~~GR~D~~~~~--~~---~~lP~~~~------------~~~~l~ 142 (170)
|.||+||+|+||+.+|||.+ || |.++|.+||.|++... ++ .++|..+. ....|+
T Consensus 517 ~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~ 596 (726)
T PRK15061 517 QSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLV 596 (726)
T ss_pred cCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHH
Confidence 68999999999999999998 57 9999999999998762 22 35676431 247899
Q ss_pred HHHHHhcCCChhhHHHhhhhh-hhhccC
Q 030844 143 QVFGAQMGLSDKDIVALSGGH-TLGALD 169 (170)
Q Consensus 143 ~~F~~~~Gl~~~e~VaL~GaH-tiG~~h 169 (170)
+.| .++|||++|||||+||| ++|.+|
T Consensus 597 d~a-~~lglt~~EmvaL~Gg~r~Lg~~~ 623 (726)
T PRK15061 597 DKA-QLLTLTAPEMTVLVGGLRVLGANY 623 (726)
T ss_pred HHH-HhCCCChHHHhheecchhhcccCC
Confidence 999 99999999999999997 788876
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.3e-30 Score=225.15 Aligned_cols=154 Identities=39% Similarity=0.650 Sum_probs=141.4
Q ss_pred HHHHHHHHhhhhhhcC---------CchHHHHHHHhhhccccCCCCCCCCCC-CccccHHHhhccccCchHHHHHHHHHH
Q 030844 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (170)
Q Consensus 15 ~v~~~~~~~~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (170)
.+.+.++||.+++.+. .++|.+|||+||-++||+..++.||.. |..||.|+.+||.|.+|++++.+|++|
T Consensus 68 D~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 68 DLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred cHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhH
Confidence 5778899999998874 589999999999999999999999997 599999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCCC------------------------------------
Q 030844 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------------ 127 (170)
Q Consensus 85 k~~~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~------------------------------------ 127 (170)
|++|+ .||+||++.|++.+|+|.+|++.+.|..||.|-..+..
T Consensus 148 KkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYV 227 (730)
T COG0376 148 KKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYV 227 (730)
T ss_pred hHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEe
Confidence 99998 89999999999999999999999999999999877621
Q ss_pred ----CCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhh-hhhhhhccC
Q 030844 128 ----EGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGALD 169 (170)
Q Consensus 128 ----~~~lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~h 169 (170)
.+..|+|..+..+++..| ++|+|+++|+|||+ ||||+|.+|
T Consensus 228 NPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtH 273 (730)
T COG0376 228 NPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTH 273 (730)
T ss_pred CCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhccccccccc
Confidence 134688888999999999 99999999999996 699999998
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.55 E-value=5.6e-15 Score=131.62 Aligned_cols=146 Identities=28% Similarity=0.441 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCC-ccccHHHhhccccC--chHHHHHHHHHHHhhCC
Q 030844 13 KKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQFP 89 (170)
Q Consensus 13 ~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dg-si~~~~E~~~~~N~--gl~~~~~~i~~ik~~~~ 89 (170)
.+.|..+|.+ ++...-....|+-.+|-.+.||..|++.||+|| .|++.|.++|+.|. .|.+.+.+++.|.+.+.
T Consensus 448 d~di~~lK~~---IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fn 524 (730)
T COG0376 448 DADIAALKAK---ILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFN 524 (730)
T ss_pred hHHHHHHHHH---HHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3555555543 466677789999999999999999999999998 99999999999995 57789999999999997
Q ss_pred -CCcHHHHHHHhhhhhhhcc---CCC--CCCCCCCCCCCCCCCC-----CCCCCC------------CCCCHHHHHHHHH
Q 030844 90 -TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPPQ-----EGRLPD------------AKQGNDHLRQVFG 146 (170)
Q Consensus 90 -~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~~~~-----~~~lP~------------~~~~~~~l~~~F~ 146 (170)
.||.||+|+|++..+||.+ .|- .+||.+||.|+.+... ...-|- .-....-|+++-
T Consensus 525 kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA- 603 (730)
T COG0376 525 KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA- 603 (730)
T ss_pred CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH-
Confidence 7999999999999999863 443 4689999999987511 001111 111234467888
Q ss_pred HhcCCChhhHHHhhhh
Q 030844 147 AQMGLSDKDIVALSGG 162 (170)
Q Consensus 147 ~~~Gl~~~e~VaL~Ga 162 (170)
+.++||..||++|+||
T Consensus 604 qlL~LtapemtVLiGG 619 (730)
T COG0376 604 QLLTLTAPEMTVLIGG 619 (730)
T ss_pred HHhccCCccceEEEcc
Confidence 8899999999999987
No 19
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=44.65 E-value=15 Score=21.49 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=12.3
Q ss_pred HhcCCChhhHH-Hhhh
Q 030844 147 AQMGLSDKDIV-ALSG 161 (170)
Q Consensus 147 ~~~Gl~~~e~V-aL~G 161 (170)
...|||++|.| ||+|
T Consensus 19 e~l~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 19 EALGLTPEDAVEALIG 34 (35)
T ss_pred hhcCCCHHHHHHHHhc
Confidence 56789999988 7776
No 20
>PRK12346 transaldolase A; Provisional
Probab=44.38 E-value=20 Score=31.01 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHhhhhhh--hccCCCCCCCCCCCCCCCCCC--CCCCCCC-CC---CCHHHHHHHHHHh
Q 030844 77 AVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPP--QEGRLPD-AK---QGNDHLRQVFGAQ 148 (170)
Q Consensus 77 ~~~~i~~ik~~~~~VS~ADiialAa~~av--~~~GGP~~~v~~GR~D~~~~~--~~~~lP~-~~---~~~~~l~~~F~~~ 148 (170)
|+..++.++++ .|+|--.+.+....++ ..+|-.++..+.||.|-..-. +...++. .. ..+.++.++| ++
T Consensus 138 Gi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~ 214 (316)
T PRK12346 138 GIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY-KQ 214 (316)
T ss_pred HHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHH-HH
Confidence 44444444332 3333333333333333 346888899999998764321 1111211 11 3577888899 78
Q ss_pred cCCC----------hhhHHHhhhhhhh
Q 030844 149 MGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 149 ~Gl~----------~~e~VaL~GaHti 165 (170)
.|+. ..|+.+|.|.|.+
T Consensus 215 ~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 215 HRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 7753 6788899998854
No 21
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=43.84 E-value=25 Score=31.22 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHhhhhhh--hccCCCCCCCCCCCCCCCCCCCCC--CCCCCC----CCHHHHHHHHHHh
Q 030844 77 AVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQEG--RLPDAK----QGNDHLRQVFGAQ 148 (170)
Q Consensus 77 ~~~~i~~ik~~~~~VS~ADiialAa~~av--~~~GGP~~~v~~GR~D~~~~~~~~--~lP~~~----~~~~~l~~~F~~~ 148 (170)
|+..+..++++ .|.|--.+.+....|+ ..+|-..+..+.||.|-+.-...+ .+|... ..+.++.++| +.
T Consensus 143 Gi~A~~~L~~~--GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~-~~ 219 (391)
T PRK12309 143 GIKAAEVLEKE--GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY-KK 219 (391)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHH-Hh
Confidence 45555554433 2333222333333332 236788899999998764322111 244332 2577888888 77
Q ss_pred cCCC----------hhhHHHhhhhhhh
Q 030844 149 MGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 149 ~Gl~----------~~e~VaL~GaHti 165 (170)
.|+. ..++..|+|.|.+
T Consensus 220 ~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 220 FGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCcEEEecccCCHHHHHHHHCCCee
Confidence 7753 5778888898854
No 22
>PTZ00411 transaldolase-like protein; Provisional
Probab=43.48 E-value=22 Score=30.92 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=37.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCC--CCCCC-CC---CCHHHHHHHHHHhcCC----------ChhhHHHhhhhhhh
Q 030844 107 VTGGPDIPFHPGRDDKAEPPQE--GRLPD-AK---QGNDHLRQVFGAQMGL----------SDKDIVALSGGHTL 165 (170)
Q Consensus 107 ~~GGP~~~v~~GR~D~~~~~~~--~~lP~-~~---~~~~~l~~~F~~~~Gl----------~~~e~VaL~GaHti 165 (170)
.+|-.++..+.||.+-+.-.+. ...+. .. ..+.++.++| +..|+ |..|+..|+|.|.+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY-KKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHH-HHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 3577888999999855432111 11221 11 2567888888 78776 46788889999854
No 23
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=38.55 E-value=33 Score=29.58 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHhhhhhh--hccCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCCHHHHHHHHHHh
Q 030844 77 AVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGAQ 148 (170)
Q Consensus 77 ~~~~i~~ik~~~~~VS~ADiialAa~~av--~~~GGP~~~v~~GR~D~~~~~~~~--~lP~----~~~~~~~l~~~F~~~ 148 (170)
|+..++.++++ .|+|-=.+.+....|+ ..+|-..+..+.||.|-..-...+ ..+. +-..+.++.+.| ++
T Consensus 137 Gi~A~~~L~~~--GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~-~~ 213 (313)
T cd00957 137 GIQAAKQLEKE--GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY-KK 213 (313)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHH-HH
Confidence 44555444443 3333333333333332 235777889999998754221111 1111 123578888889 78
Q ss_pred cCCC----------hhhHHHhhhhhhh
Q 030844 149 MGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 149 ~Gl~----------~~e~VaL~GaHti 165 (170)
.|+. ..|+..|+|.|.+
T Consensus 214 ~~~~T~vmaASfRn~~~v~~laG~d~~ 240 (313)
T cd00957 214 FGYKTKVMGASFRNIGQILALAGCDYL 240 (313)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCeE
Confidence 8864 5777888888743
No 24
>PRK05269 transaldolase B; Provisional
Probab=35.05 E-value=23 Score=30.62 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=37.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCC---CCCCC---CCCCCHHHHHHHHHHhcCCC----------hhhHHHhhhhhhh
Q 030844 107 VTGGPDIPFHPGRDDKAEPPQ---EGRLP---DAKQGNDHLRQVFGAQMGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 107 ~~GGP~~~v~~GR~D~~~~~~---~~~lP---~~~~~~~~l~~~F~~~~Gl~----------~~e~VaL~GaHti 165 (170)
.+|-..+..+.||.|-..-.. ...-+ ++-..+.++.+.| ++.|+. ..++..|+|.|++
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY-KKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH-HHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 357788899999987542211 01011 1223678888999 788764 5677888888864
No 25
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=34.25 E-value=16 Score=27.84 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHhcCCChhhH-HHhhhhhhhhccC
Q 030844 136 QGNDHLRQVFGAQMGLSDKDI-VALSGGHTLGALD 169 (170)
Q Consensus 136 ~~~~~l~~~F~~~~Gl~~~e~-VaL~GaHtiG~~h 169 (170)
+++.+.+-.| .++||++.++ |.|--+|-||.+.
T Consensus 31 ddvkeqI~K~-akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKL-AKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHH-HHcCCChhHceeeeecccCcchhh
Confidence 3566677888 8999999998 5677889888753
No 26
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=32.15 E-value=43 Score=28.97 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=37.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCCHHHHHHHHHHhcCCC----------hhhHHHhhhhhhh
Q 030844 107 VTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGAQMGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 107 ~~GGP~~~v~~GR~D~~~~~~~~--~lP~----~~~~~~~l~~~F~~~~Gl~----------~~e~VaL~GaHti 165 (170)
.+|-..+..+.||.+-+.-...+ ..+. +-..+.++.++| ++.|+. ..|+.+|.|+|.+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qv~~laG~d~~ 240 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY-KKHGYPTEVMGASFRNKEEILALAGCDRL 240 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHH-HHcCCCcEEEeeccCCHHHHHHHHCCCeE
Confidence 45788899999998663221111 1111 224678888899 788863 6788888888843
No 27
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=31.70 E-value=19 Score=29.99 Aligned_cols=87 Identities=13% Similarity=-0.038 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhCCCCcHHHHHHHhhhhhhh--ccCCCCCCCCCCCCCCCCCCC-CCCCCCCC--C---CHHHHHHHHHH
Q 030844 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQ-EGRLPDAK--Q---GNDHLRQVFGA 147 (170)
Q Consensus 76 ~~~~~i~~ik~~~~~VS~ADiialAa~~av~--~~GGP~~~v~~GR~D~~~~~~-~~~lP~~~--~---~~~~l~~~F~~ 147 (170)
.|++.+..++++ .|++-=.+.+....++. .+|..++.++.||.|...-.. ...-+++. . .+.++.+.| +
T Consensus 127 ~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~-~ 203 (252)
T cd00439 127 EGIPAIKDLIAA--GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLY-K 203 (252)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHH-H
Confidence 456666666554 23322223333333332 357778899999998755411 10111121 2 345677777 6
Q ss_pred hcCCC----------hhhHHHhhhhhhh
Q 030844 148 QMGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 148 ~~Gl~----------~~e~VaL~GaHti 165 (170)
..|.+ ..++..|.|.|++
T Consensus 204 ~~~~~tkiL~AS~r~~~~v~~l~G~d~v 231 (252)
T cd00439 204 QKFKKQRVLWASFSDTLYVAPLIGCDTV 231 (252)
T ss_pred HhCCCCeEEEEeeCCHHHHHHhhCCCee
Confidence 66653 5666777788864
No 28
>PLN02438 inositol-3-phosphate synthase
Probab=30.62 E-value=1.3e+02 Score=27.84 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccccCchHHHHHHHHHHHhhCCCCc
Q 030844 13 KKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTIS 92 (170)
Q Consensus 13 ~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ik~~~~~VS 92 (170)
+..|+++|+|||+|.+...+..-.+ ++=+|+-. + .+...+.|..++ +++..|++.-+.||
T Consensus 203 ~e~ve~ir~DIr~Fk~~n~ld~vVV--------lwtAsTEr--------~-~~~~~~~~~t~~---~l~~ai~~~~~eis 262 (510)
T PLN02438 203 KEQMDQIRKDIREFKEKNKVDKVVV--------LWTANTER--------Y-SNVVVGLNDTME---NLLASIEKDEAEIS 262 (510)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEE--------EECCCCCC--------C-CcCCCcccCCHH---HHHHHHhcCCCcCC
Confidence 5789999999999998665432111 12222211 1 111224444442 45566776656899
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCC--CCCCCCCC-CCCCCCCCCCCC--------HHHHHHHHHHhcCCChhhHH
Q 030844 93 YADLYQLAGVVGVEVTGGPDIPFHP--GRDDKAEP-PQEGRLPDAKQG--------NDHLRQVFGAQMGLSDKDIV 157 (170)
Q Consensus 93 ~ADiialAa~~av~~~GGP~~~v~~--GR~D~~~~-~~~~~lP~~~~~--------~~~l~~~F~~~~Gl~~~e~V 157 (170)
-+=+.|.|+-. .|-|++...+ +..-+... .....+|-..++ =+.|.++| ...|+.+...+
T Consensus 263 pS~~YA~AAl~----eG~~fVNgsP~~t~vP~~~elA~~~gvpi~GDD~KSGqT~~ksvLa~~l-~~RGlkv~s~~ 333 (510)
T PLN02438 263 PSTLYALACIL----EGVPFINGSPQNTFVPGVIELAVKKNSLIGGDDFKSGQTKMKSVLVDFL-VGAGIKPTSIV 333 (510)
T ss_pred hHHHHHHHHHH----cCCCeEecCCccccChhhHHHHHHcCCCEecccccCCCchhHHHHHHHH-HHcCCceeeEE
Confidence 88888888753 5666665544 42111111 112335533322 14467888 78888765443
No 29
>PF10937 DUF2638: Protein of unknown function (DUF2638); InterPro: IPR020373 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S). This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36 [, , ].
Probab=29.72 E-value=52 Score=24.14 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCCCCCCHHHHHHHHHHhcCCChhhHHHhh
Q 030844 131 LPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (170)
Q Consensus 131 lP~~~~~~~~l~~~F~~~~Gl~~~e~VaL~ 160 (170)
++....+..+|=..| .++.++.+||=++.
T Consensus 80 ~~g~~~~~~eLP~Rf-rr~p~se~EiE~In 108 (112)
T PF10937_consen 80 LKGEYFDRSELPARF-RRKPISEEEIEAIN 108 (112)
T ss_pred CCcceeeHHHcCHhH-ccCCCCHHHHHHHH
Confidence 444556888999999 89999999998874
No 30
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=26.02 E-value=92 Score=18.63 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCChhhHHHhh
Q 030844 140 HLRQVFGAQMGLSDKDIVALS 160 (170)
Q Consensus 140 ~l~~~F~~~~Gl~~~e~VaL~ 160 (170)
+|.... ...||+..+++.+|
T Consensus 12 ~L~~~~-~~~~l~~~~vl~~S 31 (45)
T PF09388_consen 12 ELNELA-EKKGLTDPEVLELS 31 (45)
T ss_dssp HHHHHH-HHCCTTCHHHHHHH
T ss_pred HHHHHH-HHcCCCCHHHHHHH
Confidence 456667 67899999999887
No 31
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=25.71 E-value=64 Score=22.22 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCChhhHHHhhhhh
Q 030844 138 NDHLRQVFGAQMGLSDKDIVALSGGH 163 (170)
Q Consensus 138 ~~~l~~~F~~~~Gl~~~e~VaL~GaH 163 (170)
-+.|-..| +++||+..||-.|+-+.
T Consensus 10 GDtLs~iF-~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 10 GDTLSTIF-RRAGLSASDLYAVLEAD 34 (85)
T ss_dssp T--HHHHH-HHTT--HHHHHHHHHHG
T ss_pred CCcHHHHH-HHcCCCHHHHHHHHhcc
Confidence 36788899 89999999999887554
No 32
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=24.90 E-value=75 Score=20.44 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhhhhcCC-------chHHHHHHHhhhcccc
Q 030844 14 KAVEKCKRKLRGFIAEKN-------CAPLMLRIAWHSAGTY 47 (170)
Q Consensus 14 ~~v~~~~~~~~~~~~~~~-------~a~~~lRl~FHDc~~~ 47 (170)
..+.+..++|.+|++++. -....-|+.-|++.-|
T Consensus 3 ~~~l~~E~~i~~Fi~~~~~~~~~f~pm~sy~RllvH~la~~ 43 (63)
T cd02642 3 LFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQY 43 (63)
T ss_pred hHHHHHHHHHHHHHhCCCCCeeEcCCCCcHHHHHHHHHHHH
Confidence 345566777888888762 2447889999999753
No 33
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=24.77 E-value=1.1e+02 Score=20.14 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHHhhC----C-CCcHHHHHHHhhhhhhhccC
Q 030844 72 NGLDIAVRLLEPFKEQF----P-TISYADLYQLAGVVGVEVTG 109 (170)
Q Consensus 72 ~gl~~~~~~i~~ik~~~----~-~VS~ADiialAa~~av~~~G 109 (170)
..+.+.++.+++.-..- + .+|.||+..+....-+...+
T Consensus 31 ~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 31 AKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC
Confidence 34456677777654432 2 79999998887766555433
No 34
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=21.91 E-value=47 Score=26.95 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhCCCCcHHHHHHHhhhhhhh--ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCC-
Q 030844 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLS- 152 (170)
Q Consensus 76 ~~~~~i~~ik~~~~~VS~ADiialAa~~av~--~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gl~- 152 (170)
.|++.+..++++ .|.+--...+....|+. .+|--++..+.||.|-..- ++-.-+.++.+.| +..|++
T Consensus 89 ~Gl~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~-------dg~~~v~~~~~~~-~~~~~~t 158 (213)
T TIGR00875 89 EGLKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGG-------DGMKLIEEVKTIF-ENHAPDT 158 (213)
T ss_pred HHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEeecchHHHcCC-------CHHHHHHHHHHHH-HHcCCCC
Confidence 466667666654 11111111222222221 2465567899999876432 1344567888888 777765
Q ss_pred ---------hhhHH--Hhhhhhhh
Q 030844 153 ---------DKDIV--ALSGGHTL 165 (170)
Q Consensus 153 ---------~~e~V--aL~GaHti 165 (170)
.+++. +++|+|++
T Consensus 159 kIlaAS~r~~~~v~~~~~~G~d~v 182 (213)
T TIGR00875 159 EVIAASVRHPRHVLEAALIGADIA 182 (213)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEE
Confidence 34544 46788754
No 35
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=20.68 E-value=39 Score=26.97 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=11.3
Q ss_pred hhHHHhhhhhhhhccCC
Q 030844 154 KDIVALSGGHTLGALDW 170 (170)
Q Consensus 154 ~e~VaL~GaHtiG~~hc 170 (170)
+|++-=+ ||++|-.||
T Consensus 126 KEv~HEl-GH~~GL~HC 141 (181)
T COG1913 126 KEVLHEL-GHLLGLSHC 141 (181)
T ss_pred HHHHHHh-hhhcCcccC
Confidence 3444434 699999999
Done!