BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030845
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 223 bits (569), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 102/167 (61%), Positives = 130/167 (77%)
Query: 1 MGASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNK 60
M S +S+++FTVKD+K DVDLSI+KGKVLLIVNVASKCG T+SNY+++ LY K
Sbjct: 1 MATQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEK 60
Query: 61 YKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLK 120
YK +GLEILAFPCNQF ++EPGT+ + +F CTR+K+E+PIF K+ VNG NA PLY+FLK
Sbjct: 61 YKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLK 120
Query: 121 ASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167
K G FG I+WNF KFLV+ +G V+ RY PTTSP+++E DIK L
Sbjct: 121 LGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL 167
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 180 bits (456), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 10 KSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEIL 69
KSIYEF V + GK DLS +KG LLI NVAS+CG+T Y T LYNKYK +G +L
Sbjct: 3 KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVL 62
Query: 70 AFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGS 129
AFPCNQF QEPGT+ E EFACTR+KA++PI K+ VNG A PLY+F+KA+ G FG+
Sbjct: 63 AFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATIPGLFGT 122
Query: 130 R-IKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168
+ IKWNFT FL+D G + R+SP S IE + LG
Sbjct: 123 KAIKWNFTSFLIDRHGVPVERFSPGASVEDIEKKLLPLLG 162
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 176 bits (445), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 106/157 (67%)
Query: 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
SIYEFTVKD G DV L Y+G V LIVNVA K G TD NY QL +++ + KGL ILA
Sbjct: 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 71 FPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSR 130
FPCNQF QEP E +F +Y ++ +F K++VNG +A+ LYKFLK+ + G +
Sbjct: 70 FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 131 IKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167
IKWNF+KFLVD +G + RYSPTT+P IEGDI L
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 106/157 (67%)
Query: 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
SIYEFTVKD G DV L Y+G V LIVNVA K G TD NY QL +++ + KGL ILA
Sbjct: 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 71 FPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSR 130
FPCNQF QEP E +F +Y ++ +F K++VNG +A+ LYKFLK+ + G +
Sbjct: 70 FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 131 IKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167
IKWNF+KFLVD +G + RYSPTT+P IEGDI L
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 2 GASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKY 61
G S SI++F V D+ K +L +KG LLI NVASKCG+T Y T LYNKY
Sbjct: 18 GGSHMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKY 77
Query: 62 KHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKA 121
K +G +LAFPCNQF QEPG +E EF CT++KAE+PI K+ VNG NA PLY+++K
Sbjct: 78 KSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKK 137
Query: 122 SKTGYFGSR-IKWNFTKFLVDTEGNVIGRYSPTTSPMAIE 160
+K G ++ IKWNFT FL+D +G + R+SP S IE
Sbjct: 138 TKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIE 177
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 162 bits (410), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
Query: 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
SI++F V D+ K +L +KG LLI NVASKCG+T Y T LYNKYK +G +LA
Sbjct: 25 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 84
Query: 71 FPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSR 130
FP NQF QEPG +E EF CT++KAE+PI K+ VNG NA PLY+++K +K G ++
Sbjct: 85 FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 144
Query: 131 -IKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALGDV 170
IKWNFT FL+D +G + R+SP S IE + LG
Sbjct: 145 AIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGSA 185
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 106/156 (67%), Gaps = 3/156 (1%)
Query: 10 KSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEIL 69
+S++EF+ KD G V+L Y+G V ++ NVAS+CG T+ NY+QL DL+ +Y GL IL
Sbjct: 25 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRIL 84
Query: 70 AFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASK--TGYF 127
AFPCNQF KQEPG+++E EFA Y ++ +F K+ VNG +A PL+K++K G
Sbjct: 85 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 143
Query: 128 GSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163
G+ IKWNFTKFL+D G V+ RY P P+ IE D+
Sbjct: 144 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 179
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
SI++F V D+ K +L +KG LLI NVASKCG+T Y T LYNKYK +G +LA
Sbjct: 5 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 64
Query: 71 FPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSR 130
FP NQF QEPG +E EF CT++KAE+PI K+ VNG NA PLY+++K +K G ++
Sbjct: 65 FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 124
Query: 131 -IKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168
IKWNFT FL+D +G + R+SP S IE + LG
Sbjct: 125 AIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG 163
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 156 bits (395), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 105/156 (67%), Gaps = 3/156 (1%)
Query: 10 KSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEIL 69
+S++EF+ KD G V+L Y+G V ++ NVAS+ G T+ NY+QL DL+ +Y GL IL
Sbjct: 27 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRIL 86
Query: 70 AFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASK--TGYF 127
AFPCNQF KQEPG+++E EFA Y ++ +F K+ VNG +A PL+K++K G
Sbjct: 87 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 145
Query: 128 GSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163
G+ IKWNFTKFL+D G V+ RY P P+ IE D+
Sbjct: 146 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 181
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 154 bits (388), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 1 MGASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNK 60
MG Y+ D KG+ KGKV+LIVNVASKCGFT Y +L LY +
Sbjct: 1 MGHHHHHHMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKR 59
Query: 61 YKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLK 120
YK +G I+ FPCNQF QEPG+ +E +F Y +PI +K+ VNG N +P+YKFLK
Sbjct: 60 YKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLK 119
Query: 121 ASKTGYFGSR-IKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALGDV 170
+ K+G G R IKWNF KFLVD +G V RYS T P ++ I+ L +V
Sbjct: 120 SQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLKEV 170
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 129 bits (323), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Query: 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
S Y F VKD+KG+ V L YKGKV L+VNVAS C TD NY L +L+ ++ +LA
Sbjct: 17 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 71 FPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSR 130
FPCNQF + EP S+E FA Y +PIF K+++ G EP ++FL S
Sbjct: 77 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSK----KE 132
Query: 131 IKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALGDV 170
+WNF K+LV+ EG V+ + P I DI + V
Sbjct: 133 PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQV 172
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Query: 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
S Y F VKD+KG+ V L YKGKV L+VNVAS C TD NY L +L+ ++ +LA
Sbjct: 26 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 85
Query: 71 FPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSR 130
FPCNQF + EP S+E FA Y +PIF K+++ G EP ++FL S
Sbjct: 86 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSK----KE 141
Query: 131 IKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALGDV 170
+WNF K+LV+ EG V+ + P I DI + V
Sbjct: 142 PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQV 181
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 9 QKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEI 68
++ Y+F + +GK V L Y+G V L+VNVAS+CGFTD +Y L L +
Sbjct: 26 EQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNV 85
Query: 69 LAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFG 128
LAFPCNQF +QEP +++E FA Y +P+F K+ V G A P +K+L + G
Sbjct: 86 LAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----G 141
Query: 129 SRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163
WNF K+LV +G V+G + PT S + I
Sbjct: 142 KEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQI 176
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 27/188 (14%)
Query: 5 ESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK 64
+S+ KS Y+ + + G+ VD + ++G+ +LI NVAS CG T +++QL +L ++ +
Sbjct: 21 QSMIAKSFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRFPRR 80
Query: 65 GLEILAFPCNQFLKQEPGTSQEA-HEFACTR----YKAEYPIFQKVRVNGPNAEPLYKFL 119
L +L FPCNQF QE ++E + R Y+ + + QK VNG N P++ +L
Sbjct: 81 -LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYL 139
Query: 120 KASKTGY--------------------FGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAI 159
K K Y S + WNF KFL+ EG RYS T + I
Sbjct: 140 K-DKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINI 198
Query: 160 EGDIKNAL 167
E DIK L
Sbjct: 199 EPDIKRLL 206
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 29/185 (15%)
Query: 10 KSIYEFTVKD-SKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEI 68
+++Y F+ + + G+ +LS +GKVLLI NVAS G T +Y+Q+ DL + +GL +
Sbjct: 10 RTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLVV 69
Query: 69 LAFPCNQFLKQEPGTSQEAHEFACTRY-------KAEYPIFQKVRVNGPNAEPLYKFLKA 121
L FPCNQF QE ++E C +Y + + +F+K VNG A PL+ FL+
Sbjct: 70 LGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLRE 127
Query: 122 -------------------SKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162
+ + + + WNF KFLV +G + RYS + IE D
Sbjct: 128 VLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPD 187
Query: 163 IKNAL 167
I+ L
Sbjct: 188 IETLL 192
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 25/183 (13%)
Query: 10 KSIYEFTVKD-SKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEI 68
+S+Y F+ + + G+ V L +GKVLLI NVAS G T +Y+Q+ +L + +GL +
Sbjct: 24 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVV 83
Query: 69 LAFPCNQFLKQEPGTSQE-AHEFACTR----YKAEYPIFQKVRVNGPNAEPLYKFLKASK 123
L FPCNQF QE ++E + R ++ + +F+K VNG A PL+ FL+ +
Sbjct: 84 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 143
Query: 124 TG-------------------YFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIK 164
+ + WNF KFLV +G + RYS + IE DI+
Sbjct: 144 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 203
Query: 165 NAL 167
L
Sbjct: 204 ALL 206
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 22/174 (12%)
Query: 11 SIYEF-TVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEIL 69
+IY++ + +K + V Y GK +L VNVA+ CG T + Y +L L + K GL +L
Sbjct: 34 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVL 92
Query: 70 AFPCNQFLKQEPGTSQEA-----HEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKAS-- 122
FPCNQF KQEPG ++E + + + +F+K VNG + ++ FLK S
Sbjct: 93 GFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCP 152
Query: 123 ----KTGYFGS---------RIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163
G F S I+WNF KFLV +G + R+S + +++ DI
Sbjct: 153 HPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 206
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 11 SIYEFTVKDSKGKD-VDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEIL 69
+IYE+ G++ + Y GK +L VNVAS G T Y +L L + GL IL
Sbjct: 16 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 70 AFPCNQFLKQEPGTSQEA-----HEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKAS-- 122
FPCNQF KQEPG + E + + + +F+K VNG + Y FLK S
Sbjct: 75 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 134
Query: 123 -KTGYFGSR------------IKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163
+ G+ I+WNF KFLV +G I R+ T+ ++ DI
Sbjct: 135 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 188
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized
Thioredoxin-Like Protein Bvu_1432 From Bacteroides
Vulgatus
Length = 152
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 5 ESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK 64
+ + + SI + +KD KG L+ KGKV+LI + ++ L +LYNKY +
Sbjct: 8 DKIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ 67
Query: 65 GLEILAFPCN---QFLKQEPGTSQEAHEFACTR 94
G EI + F K TS + + C R
Sbjct: 68 GFEIYQISLDGDEHFWK----TSADNLPWVCVR 96
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
F ++D+ GK ++LS KGK + + + C + + + Y +K +G+EI+A
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
F ++D+ GK ++LS KGK + + + C + + + Y +K +G+EI+A
Sbjct: 6 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVA 61
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
S F+ D GK V L+ KGK + I A+ CG L +L KY K + ++
Sbjct: 9 SAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVS 68
Query: 71 FPCNQ 75
C++
Sbjct: 69 LSCDK 73
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
F ++D+ GK ++LS KGK + + + C + + + Y +K +G+EI+A
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
F ++D+ GK ++LS KGK + + + C + + + Y +K +G+EI+A
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVA 64
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
F ++D+ GK ++LS KGK + + + C + + + Y +K +G+EI+A
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
F ++D+ GK ++LS KGK + + + C + + Y +K +G+EI+A
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVA 64
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 14 EFTVKDSKGKDVDLSIYKGKVLLIVNVASKCG 45
+FT+ + GK V LS +GKV+++ AS CG
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCG 46
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 6 SVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKG 65
S+ K+ F++ D GK V + +GKV LI C S ++ N YK+K
Sbjct: 2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN 61
Query: 66 LEILA 70
++LA
Sbjct: 62 FQVLA 66
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
F ++D+ GK ++LS KGK + + + + + + Y +K +G+EI+A
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 6 SVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKG 65
S P K + + +D+ GK LS ++GK LL+ A+ C L +L K
Sbjct: 35 SAPLK-LPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN 93
Query: 66 LEILAFPCNQFLKQEPGT 83
E++A + ++P T
Sbjct: 94 FEVVAINIDTRDPEKPKT 111
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70
F ++D+ GK ++LS KGK + + + + + + Y +K +G+EI+A
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of
Thiol-Disulfide Oxidoreductase Bvu-2223 (Target
Efi-501010) From Bacteroides Vulgatus
Length = 152
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 19 DSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQ 75
D KG V L+ +KGK +L+ + C + L YN +K KG I ++
Sbjct: 16 DLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR 72
>pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
Length = 1052
Score = 29.3 bits (64), Expect = 0.99, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 76 FLKQEPGTSQEAHEFACTRY---KAEYPIFQKVRVNGPNAEPLYKF 118
FL+ + G E A ++ A+ P Q+VR NG + EP YK
Sbjct: 683 FLQDQAGVGHEVLLQARNKFLMLAAQNPALQRVRPNGMSDEPQYKL 728
>pdb|1EZW|A Chain A, Structure Of Coenzyme F420 Dependent
Tetrahydromethanopterin Reductase From Methanopyrus
Kandleri
Length = 349
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 33 KVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTS 84
K+ ++ VA GF Y+ + D YN Y + G+ LA +K PG +
Sbjct: 18 KIAHLIKVAEDNGF---EYAWICDHYNNYSYMGVLTLAAVITSKIKLGPGIT 66
>pdb|2HYX|A Chain A, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|B Chain B, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|C Chain C, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|D Chain D, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
Length = 352
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 23 KDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQF-LKQEP 81
K +DL +GKV+LI A C + Y YK GL ++ ++ ++ P
Sbjct: 73 KPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVP 132
Query: 82 G 82
G
Sbjct: 133 G 133
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 39/124 (31%)
Query: 53 QLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRY--------KAEYPIFQK 104
+L D+ K +G + FP E A T + +AE F +
Sbjct: 26 RLLDMLTKAASRGANFIVFP----------------ELALTTFFPRWHFTDEAELDSFYE 69
Query: 105 VRVNGPNAEPLYKFLKASKTGYF------------GSRIKWNFTKFLVDTEGNVIGRYSP 152
+ GP PL++ KA++ G G + ++N T LVD G ++G+Y
Sbjct: 70 TEMPGPVVRPLFE--KAAELGIGFNLGYAELVVEGGVKRRFN-TSILVDKSGKIVGKYRK 126
Query: 153 TTSP 156
P
Sbjct: 127 IHLP 130
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 39/124 (31%)
Query: 53 QLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRY--------KAEYPIFQK 104
+L D+ K +G + FP E A T + +AE F +
Sbjct: 26 RLLDMLTKAASRGANFIVFP----------------ELALTTFFPRWHFTDEAELDSFYE 69
Query: 105 VRVNGPNAEPLYKFLKASKTGYF------------GSRIKWNFTKFLVDTEGNVIGRYSP 152
+ GP PL++ KA++ G G + ++N T LVD G ++G+Y
Sbjct: 70 TEMPGPVVRPLFE--KAAELGIGFNLGYAELVVEGGVKRRFN-TSILVDKSGKIVGKYRK 126
Query: 153 TTSP 156
P
Sbjct: 127 IHLP 130
>pdb|1XZO|A Chain A, Identification Of A Disulfide Switch In Bssco, A Member
Of The Sco Family Of Cytochrome C Oxidase Assembly
Proteins
pdb|1XZO|B Chain B, Identification Of A Disulfide Switch In Bssco, A Member
Of The Sco Family Of Cytochrome C Oxidase Assembly
Proteins
Length = 174
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKC-GFTDSNYSQLTDLYNKYKHKGLEI 68
FT ++ GK+V L KG+V L + + C + +TDL K K + +++
Sbjct: 16 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDV 70
>pdb|1ON4|A Chain A, Solution Structure Of Soluble Domain Of Sco1 From
Bacillus Subtilis
Length = 174
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 15 FTVKDSKGKDVDLSIYKGKVLLIVNVASKC-GFTDSNYSQLTDLYNKYKHKGLEI 68
FT ++ GK+V L KG+V L + + C + +TDL K K + +++
Sbjct: 16 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDV 70
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 35/122 (28%)
Query: 53 QLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRY--------KAEYPIFQK 104
+L D+ +G+ + FP E A T + +AE F +
Sbjct: 27 RLLDMLTNAASRGVNFIVFP----------------ELALTTFFPRWHFTDEAELDSFYE 70
Query: 105 VRVNGPNAEPLYKFLKASKTGY----------FGSRIKWNFTKFLVDTEGNVIGRYSPTT 154
+ GP PL++ G+ G + ++N T LVD G ++G+Y
Sbjct: 71 TEMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFN-TSILVDKSGKIVGKYRKIH 129
Query: 155 SP 156
P
Sbjct: 130 LP 131
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 35/122 (28%)
Query: 53 QLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRY--------KAEYPIFQK 104
+L D+ +G+ + FP E A T + +AE F +
Sbjct: 27 RLLDMLTNAASRGVNFIVFP----------------ELALTTFFPRWHFTDEAELDSFYE 70
Query: 105 VRVNGPNAEPLYKFLKASKTGY----------FGSRIKWNFTKFLVDTEGNVIGRYSPTT 154
+ GP PL++ G+ G + ++N T LVD G ++G+Y
Sbjct: 71 TEMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFN-TSILVDKSGKIVGKYRKIH 129
Query: 155 SP 156
P
Sbjct: 130 LP 131
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 35/122 (28%)
Query: 53 QLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRY--------KAEYPIFQK 104
+L D+ +G+ + FP E A T + +AE F +
Sbjct: 27 RLLDMLTNAASRGVNFIVFP----------------ELALTTFFPRWHFTDEAELDSFYE 70
Query: 105 VRVNGPNAEPLYKFLKASKTGY----------FGSRIKWNFTKFLVDTEGNVIGRYSPTT 154
+ GP PL++ G+ G + ++N T LVD G ++G+Y
Sbjct: 71 TEMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFN-TSILVDKSGKIVGKYRKIH 129
Query: 155 SP 156
P
Sbjct: 130 LP 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,230,955
Number of Sequences: 62578
Number of extensions: 210106
Number of successful extensions: 504
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 52
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)