Query 030845
Match_columns 170
No_of_seqs 119 out of 1490
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:26:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00056 glutathione peroxidas 100.0 1.1E-35 2.4E-40 211.2 18.2 167 2-169 9-180 (199)
2 PLN02412 probable glutathione 100.0 1.8E-35 4E-40 205.1 18.5 162 8-169 5-166 (167)
3 PLN02399 phospholipid hydroper 100.0 1.6E-35 3.4E-40 213.7 17.2 162 7-168 74-235 (236)
4 PRK10606 btuE putative glutath 100.0 2E-33 4.3E-38 196.2 17.8 159 10-169 3-183 (183)
5 cd00340 GSH_Peroxidase Glutath 100.0 1.6E-33 3.4E-38 192.8 16.7 151 11-162 1-151 (152)
6 PTZ00256 glutathione peroxidas 100.0 5.9E-33 1.3E-37 195.3 18.2 162 7-168 15-182 (183)
7 TIGR02540 gpx7 putative glutat 100.0 3.4E-32 7.4E-37 186.5 16.4 148 12-167 2-153 (153)
8 COG0386 BtuE Glutathione perox 100.0 3.4E-31 7.4E-36 174.5 15.9 159 10-169 3-162 (162)
9 KOG1651 Glutathione peroxidase 100.0 3.1E-28 6.8E-33 162.4 15.0 163 7-169 9-171 (171)
10 COG1225 Bcp Peroxiredoxin [Pos 100.0 3.6E-28 7.8E-33 163.7 12.3 146 5-163 3-149 (157)
11 PRK15412 thiol:disulfide inter 100.0 7.9E-28 1.7E-32 169.5 11.7 135 7-169 40-178 (185)
12 PF08534 Redoxin: Redoxin; In 100.0 4.6E-28 9.9E-33 164.7 9.0 123 8-155 2-136 (146)
13 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 5.7E-27 1.2E-31 155.0 11.6 117 8-149 1-124 (124)
14 cd02969 PRX_like1 Peroxiredoxi 99.9 8.3E-27 1.8E-31 162.5 12.4 144 9-169 1-154 (171)
15 PRK03147 thiol-disulfide oxido 99.9 1.3E-26 2.9E-31 161.6 13.1 138 5-166 34-171 (173)
16 PRK09437 bcp thioredoxin-depen 99.9 1.3E-26 2.8E-31 159.0 12.6 146 5-163 3-149 (154)
17 cd03017 PRX_BCP Peroxiredoxin 99.9 4.5E-27 9.7E-32 158.7 10.1 138 10-163 1-139 (140)
18 TIGR00385 dsbE periplasmic pro 99.9 3.8E-26 8.2E-31 159.4 11.7 136 7-169 35-173 (173)
19 PRK00522 tpx lipid hydroperoxi 99.9 3.5E-25 7.6E-30 153.6 15.4 144 5-165 17-164 (167)
20 cd03018 PRX_AhpE_like Peroxire 99.9 1.4E-25 2.9E-30 153.0 12.3 131 7-154 2-134 (149)
21 cd03010 TlpA_like_DsbE TlpA-li 99.9 1.1E-25 2.4E-30 149.6 10.8 122 11-158 2-125 (127)
22 cd03014 PRX_Atyp2cys Peroxired 99.9 1.6E-25 3.6E-30 151.7 11.1 126 8-153 2-129 (143)
23 cd03015 PRX_Typ2cys Peroxiredo 99.9 1.7E-25 3.8E-30 156.1 11.4 141 8-166 1-156 (173)
24 cd03012 TlpA_like_DipZ_like Tl 99.9 1.1E-25 2.4E-30 149.5 9.7 113 22-153 13-125 (126)
25 TIGR03137 AhpC peroxiredoxin. 99.9 1.2E-25 2.7E-30 158.6 10.5 128 7-152 3-137 (187)
26 cd02968 SCO SCO (an acronym fo 99.9 3.6E-25 7.9E-30 149.7 9.1 134 11-152 1-142 (142)
27 PRK13190 putative peroxiredoxi 99.9 1.1E-24 2.3E-29 155.4 11.8 143 6-167 2-154 (202)
28 TIGR02661 MauD methylamine deh 99.9 6.2E-24 1.3E-28 150.1 15.5 132 5-166 45-178 (189)
29 PRK14018 trifunctional thiored 99.9 1.7E-24 3.8E-29 171.1 13.0 138 7-165 33-171 (521)
30 cd03008 TryX_like_RdCVF Trypar 99.9 6.4E-25 1.4E-29 147.8 8.5 105 24-149 17-128 (146)
31 cd02967 mauD Methylamine utili 99.9 4.7E-24 1E-28 139.1 11.7 110 13-150 1-112 (114)
32 PRK13599 putative peroxiredoxi 99.9 2.6E-24 5.7E-29 154.3 11.1 143 7-166 3-155 (215)
33 cd02971 PRX_family Peroxiredox 99.9 3.7E-24 7.9E-29 144.4 10.6 129 11-155 1-131 (140)
34 PRK10382 alkyl hydroperoxide r 99.9 4.4E-24 9.5E-29 150.0 10.9 142 7-166 3-155 (187)
35 PRK13191 putative peroxiredoxi 99.9 5.5E-24 1.2E-28 152.7 9.9 144 6-166 7-160 (215)
36 cd03016 PRX_1cys Peroxiredoxin 99.9 7.3E-24 1.6E-28 151.3 10.5 141 9-166 2-153 (203)
37 PLN02919 haloacid dehalogenase 99.9 1.3E-23 2.8E-28 179.4 12.7 143 7-168 392-537 (1057)
38 cd02970 PRX_like2 Peroxiredoxi 99.9 8.3E-24 1.8E-28 144.0 9.1 127 11-152 1-148 (149)
39 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 2E-23 4.3E-28 137.9 10.2 121 13-162 1-121 (123)
40 PRK15000 peroxidase; Provision 99.9 2.8E-23 6.1E-28 147.7 11.6 141 7-165 3-160 (200)
41 TIGR01626 ytfJ_HI0045 conserve 99.9 2.2E-23 4.8E-28 145.0 9.1 139 4-167 21-179 (184)
42 PRK13189 peroxiredoxin; Provis 99.9 5.9E-23 1.3E-27 148.2 11.6 143 6-166 9-162 (222)
43 PTZ00137 2-Cys peroxiredoxin; 99.9 5.4E-23 1.2E-27 150.5 11.2 141 7-166 69-224 (261)
44 PTZ00253 tryparedoxin peroxida 99.9 5.3E-23 1.1E-27 146.5 10.4 138 1-156 1-149 (199)
45 cd02966 TlpA_like_family TlpA- 99.9 2.3E-22 5E-27 130.4 11.2 116 14-152 1-116 (116)
46 COG1999 Uncharacterized protei 99.9 5.2E-22 1.1E-26 141.6 13.4 153 9-169 43-206 (207)
47 cd02964 TryX_like_family Trypa 99.9 5.3E-23 1.1E-27 137.6 7.6 110 20-150 4-116 (132)
48 PRK13728 conjugal transfer pro 99.9 1.9E-22 4.2E-27 139.6 10.4 120 7-168 50-172 (181)
49 PF02630 SCO1-SenC: SCO1/SenC; 99.9 1.4E-22 3E-27 141.4 9.5 137 8-152 28-173 (174)
50 cd03009 TryX_like_TryX_NRX Try 99.9 2.4E-22 5.3E-27 134.2 6.6 112 17-150 3-116 (131)
51 cd03013 PRX5_like Peroxiredoxi 99.8 3.8E-21 8.1E-26 131.8 8.4 132 8-154 1-141 (155)
52 PF13905 Thioredoxin_8: Thiore 99.8 5.9E-21 1.3E-25 120.6 6.0 94 32-146 1-95 (95)
53 PF00255 GSHPx: Glutathione pe 99.8 1.1E-19 2.4E-24 115.9 11.8 108 12-120 1-108 (108)
54 COG0450 AhpC Peroxiredoxin [Po 99.8 4.9E-20 1.1E-24 127.0 10.4 143 6-166 3-160 (194)
55 TIGR02738 TrbB type-F conjugat 99.8 1.5E-19 3.2E-24 123.1 7.8 109 22-167 44-153 (153)
56 KOG2792 Putative cytochrome C 99.8 8.6E-19 1.9E-23 124.9 8.7 151 13-168 120-276 (280)
57 cd02950 TxlA TRX-like protein 99.8 8.2E-19 1.8E-23 118.5 8.1 109 16-169 2-112 (142)
58 KOG0855 Alkyl hydroperoxide re 99.7 5.4E-17 1.2E-21 108.6 8.9 143 6-166 63-208 (211)
59 cd02985 TRX_CDSP32 TRX family, 99.7 1.4E-16 3E-21 102.0 10.2 89 29-164 12-100 (103)
60 KOG2501 Thioredoxin, nucleored 99.7 1.1E-16 2.5E-21 107.2 7.4 115 14-150 14-132 (157)
61 cd02963 TRX_DnaJ TRX domain, D 99.6 2.7E-15 5.8E-20 97.3 9.4 90 30-166 22-111 (111)
62 cd02948 TRX_NDPK TRX domain, T 99.6 5.9E-15 1.3E-19 94.3 9.5 87 31-166 16-102 (102)
63 KOG0854 Alkyl hydroperoxide re 99.6 6.2E-15 1.4E-19 99.7 9.3 160 1-166 1-167 (224)
64 cd02951 SoxW SoxW family; SoxW 99.6 8.6E-15 1.9E-19 96.9 9.9 105 31-169 12-121 (125)
65 cd02999 PDI_a_ERp44_like PDIa 99.6 4.5E-15 9.8E-20 94.4 8.2 86 28-162 14-99 (100)
66 cd02953 DsbDgamma DsbD gamma f 99.6 6E-15 1.3E-19 94.5 8.4 90 31-163 10-103 (104)
67 KOG0910 Thioredoxin-like prote 99.6 7.7E-15 1.7E-19 97.6 9.1 90 31-168 60-149 (150)
68 TIGR02740 TraF-like TraF-like 99.6 6.5E-15 1.4E-19 109.3 9.1 109 22-168 156-265 (271)
69 cd02956 ybbN ybbN protein fami 99.6 2.4E-14 5.2E-19 90.3 9.2 85 31-163 11-95 (96)
70 PRK09381 trxA thioredoxin; Pro 99.6 4.1E-14 8.8E-19 91.4 9.8 90 31-168 20-109 (109)
71 PRK10996 thioredoxin 2; Provis 99.5 3.1E-13 6.8E-18 91.0 11.9 89 31-167 51-139 (139)
72 cd02954 DIM1 Dim1 family; Dim1 99.5 9.2E-14 2E-18 89.6 8.4 79 31-157 13-91 (114)
73 PHA02278 thioredoxin-like prot 99.5 1.4E-13 3.1E-18 87.8 8.1 87 31-161 13-99 (103)
74 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 1.2E-13 2.6E-18 88.0 7.8 84 30-161 16-99 (101)
75 KOG0907 Thioredoxin [Posttrans 99.5 4.5E-13 9.7E-18 85.7 9.3 85 31-165 20-104 (106)
76 PLN00410 U5 snRNP protein, DIM 99.5 5.6E-13 1.2E-17 89.1 10.0 91 31-168 22-121 (142)
77 PF13098 Thioredoxin_2: Thiore 99.5 6.7E-14 1.5E-18 90.7 5.3 106 31-163 4-112 (112)
78 cd02994 PDI_a_TMX PDIa family, 99.5 6.3E-13 1.4E-17 84.6 9.6 85 31-164 16-100 (101)
79 cd02993 PDI_a_APS_reductase PD 99.5 5.8E-13 1.3E-17 86.0 8.7 88 31-162 20-108 (109)
80 cd03000 PDI_a_TMX3 PDIa family 99.5 6.1E-13 1.3E-17 85.2 8.7 88 31-166 14-103 (104)
81 cd03004 PDI_a_ERdj5_C PDIa fam 99.5 8.3E-13 1.8E-17 84.5 9.2 85 31-162 18-103 (104)
82 TIGR01295 PedC_BrcD bacterioci 99.4 2.2E-12 4.8E-17 84.9 11.1 97 31-162 22-119 (122)
83 cd03006 PDI_a_EFP1_N PDIa fami 99.4 9.6E-13 2.1E-17 85.3 8.6 85 31-162 28-112 (113)
84 KOG0852 Alkyl hydroperoxide re 99.4 1E-12 2.3E-17 88.9 9.0 130 9-156 7-146 (196)
85 TIGR01126 pdi_dom protein disu 99.4 5.9E-13 1.3E-17 84.6 7.4 89 31-166 12-101 (102)
86 cd02949 TRX_NTR TRX domain, no 99.4 1.5E-12 3.3E-17 82.3 9.1 85 31-163 12-96 (97)
87 cd03005 PDI_a_ERp46 PDIa famil 99.4 5.4E-13 1.2E-17 84.9 6.8 82 34-162 18-101 (102)
88 cd03002 PDI_a_MPD1_like PDI fa 99.4 9.8E-13 2.1E-17 84.8 8.0 88 31-163 17-108 (109)
89 COG3118 Thioredoxin domain-con 99.4 4.4E-13 9.5E-18 98.3 6.7 91 30-168 41-131 (304)
90 TIGR01068 thioredoxin thioredo 99.4 5.5E-12 1.2E-16 79.8 9.8 88 32-167 14-101 (101)
91 cd02959 ERp19 Endoplasmic reti 99.4 9.3E-13 2E-17 86.1 5.3 47 27-74 14-60 (117)
92 PF00085 Thioredoxin: Thioredo 99.3 1.2E-11 2.6E-16 78.6 9.3 87 31-165 16-102 (103)
93 PTZ00443 Thioredoxin domain-co 99.3 9.1E-12 2E-16 89.8 9.3 89 32-168 52-140 (224)
94 cd02996 PDI_a_ERp44 PDIa famil 99.3 4.9E-12 1.1E-16 81.5 7.2 85 31-162 17-107 (108)
95 cd02962 TMX2 TMX2 family; comp 99.3 1.3E-11 2.9E-16 83.9 9.3 81 31-152 46-126 (152)
96 PRK00293 dipZ thiol:disulfide 99.3 1.4E-11 3E-16 100.3 9.7 94 30-167 472-570 (571)
97 cd02984 TRX_PICOT TRX domain, 99.3 1.6E-11 3.6E-16 77.4 8.1 83 32-163 14-96 (97)
98 COG2077 Tpx Peroxiredoxin [Pos 99.3 4.4E-11 9.4E-16 79.3 10.1 130 4-150 16-147 (158)
99 cd02997 PDI_a_PDIR PDIa family 99.3 1.7E-11 3.7E-16 78.2 7.8 87 31-162 16-103 (104)
100 cd03065 PDI_b_Calsequestrin_N 99.3 5.4E-11 1.2E-15 77.7 9.7 88 32-167 27-119 (120)
101 cd02998 PDI_a_ERp38 PDIa famil 99.3 2.2E-11 4.7E-16 77.7 7.7 87 31-162 17-104 (105)
102 cd02961 PDI_a_family Protein D 99.3 2.7E-11 5.8E-16 76.3 7.3 86 31-162 14-100 (101)
103 PTZ00051 thioredoxin; Provisio 99.2 4.5E-11 9.8E-16 75.5 7.7 79 31-159 17-95 (98)
104 cd03001 PDI_a_P5 PDIa family, 99.2 1.1E-10 2.4E-15 74.3 9.3 85 32-163 18-102 (103)
105 cd02965 HyaE HyaE family; HyaE 99.2 1.5E-10 3.3E-15 74.2 9.3 82 31-160 26-109 (111)
106 cd02986 DLP Dim1 family, Dim1- 99.2 1.1E-10 2.4E-15 74.9 8.1 43 31-74 13-55 (114)
107 TIGR00411 redox_disulf_1 small 99.2 3E-10 6.5E-15 69.3 9.5 81 35-167 2-82 (82)
108 cd02975 PfPDO_like_N Pyrococcu 99.2 3.6E-10 7.8E-15 73.4 10.3 90 31-168 21-111 (113)
109 PTZ00102 disulphide isomerase; 99.2 7.9E-11 1.7E-15 94.2 8.8 106 17-168 359-466 (477)
110 TIGR00424 APS_reduc 5'-adenyly 99.2 3E-10 6.5E-15 89.7 10.2 92 31-166 370-462 (463)
111 cd02995 PDI_a_PDI_a'_C PDIa fa 99.2 2.5E-10 5.4E-15 72.7 8.1 44 31-74 17-61 (104)
112 cd02955 SSP411 TRX domain, SSP 99.2 8.7E-10 1.9E-14 72.6 10.6 86 28-152 11-99 (124)
113 cd02989 Phd_like_TxnDC9 Phosdu 99.2 8.1E-10 1.7E-14 71.8 10.2 42 31-74 21-62 (113)
114 cd02957 Phd_like Phosducin (Ph 99.1 4E-10 8.6E-15 73.2 8.4 40 32-73 24-63 (113)
115 cd02947 TRX_family TRX family; 99.1 1E-09 2.3E-14 67.7 9.2 82 33-163 11-92 (93)
116 cd02958 UAS UAS family; UAS is 99.1 1.5E-09 3.2E-14 70.6 9.8 97 28-169 13-113 (114)
117 cd02992 PDI_a_QSOX PDIa family 99.1 1.2E-09 2.7E-14 71.0 8.7 43 32-74 19-63 (114)
118 PLN02309 5'-adenylylsulfate re 99.1 1.5E-09 3.2E-14 85.8 10.2 92 31-166 364-456 (457)
119 cd02952 TRP14_like Human TRX-r 99.1 6.9E-10 1.5E-14 72.4 6.9 43 31-74 20-69 (119)
120 cd02987 Phd_like_Phd Phosducin 99.0 1.8E-09 3.9E-14 75.4 8.8 41 32-74 83-123 (175)
121 KOG0908 Thioredoxin-like prote 99.0 1.7E-09 3.6E-14 77.6 8.5 92 27-168 16-107 (288)
122 PF00837 T4_deiodinase: Iodoth 99.0 2.3E-09 5.1E-14 76.9 8.5 142 6-166 73-236 (237)
123 TIGR01130 ER_PDI_fam protein d 99.0 2.9E-09 6.3E-14 84.7 9.2 91 31-168 17-110 (462)
124 TIGR00412 redox_disulf_2 small 99.0 7.6E-09 1.6E-13 62.4 8.5 35 36-71 2-36 (76)
125 cd02988 Phd_like_VIAF Phosduci 99.0 6.4E-09 1.4E-13 73.6 9.4 40 32-73 102-141 (192)
126 PTZ00062 glutaredoxin; Provisi 99.0 4.7E-09 1E-13 74.7 8.6 77 33-167 18-94 (204)
127 PTZ00102 disulphide isomerase; 99.0 3E-09 6.5E-14 85.2 8.1 90 31-168 48-139 (477)
128 cd02982 PDI_b'_family Protein 98.9 1.4E-08 3.1E-13 64.5 8.8 41 32-73 12-52 (103)
129 TIGR02187 GlrX_arch Glutaredox 98.9 1.3E-08 2.8E-13 73.4 9.0 91 30-167 17-111 (215)
130 PF13728 TraF: F plasmid trans 98.9 1.7E-08 3.6E-13 72.7 8.6 99 27-163 115-214 (215)
131 TIGR02739 TraF type-F conjugat 98.9 1.3E-08 2.7E-13 74.7 7.8 104 27-168 145-249 (256)
132 PRK13703 conjugal pilus assemb 98.8 1.9E-08 4.1E-13 73.4 7.5 104 27-168 138-242 (248)
133 TIGR01130 ER_PDI_fam protein d 98.8 4.5E-08 9.8E-13 77.9 9.3 89 31-167 363-454 (462)
134 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 2.3E-07 5E-12 57.6 8.9 45 27-73 7-51 (89)
135 cd02960 AGR Anterior Gradient 98.7 2.8E-08 6E-13 65.6 4.5 25 30-54 21-45 (130)
136 PF14595 Thioredoxin_9: Thiore 98.7 1.3E-07 2.8E-12 62.7 7.5 90 28-164 37-126 (129)
137 TIGR02187 GlrX_arch Glutaredox 98.7 2.5E-07 5.4E-12 66.8 9.6 41 31-73 132-172 (215)
138 PHA02125 thioredoxin-like prot 98.6 7E-07 1.5E-11 53.6 8.1 22 36-57 2-23 (75)
139 KOG0190 Protein disulfide isom 98.5 2E-07 4.4E-12 73.8 6.4 89 31-166 41-131 (493)
140 smart00594 UAS UAS domain. 98.5 9.6E-07 2.1E-11 58.1 7.9 91 28-163 23-121 (122)
141 cd02973 TRX_GRX_like Thioredox 98.5 1.6E-06 3.4E-11 50.7 8.0 38 35-74 2-39 (67)
142 COG0526 TrxA Thiol-disulfide i 98.5 6.3E-07 1.4E-11 57.2 6.1 49 25-74 25-73 (127)
143 PF04592 SelP_N: Selenoprotein 98.4 6.3E-06 1.4E-10 59.1 9.8 115 11-150 9-126 (238)
144 PF13899 Thioredoxin_7: Thiore 98.3 2.7E-06 5.8E-11 51.9 6.1 44 30-74 15-61 (82)
145 cd01659 TRX_superfamily Thiore 98.3 6E-06 1.3E-10 46.6 6.9 38 36-75 1-38 (69)
146 COG4232 Thiol:disulfide interc 98.3 2.9E-06 6.3E-11 68.2 6.6 95 30-166 472-567 (569)
147 KOG0191 Thioredoxin/protein di 98.2 1.7E-05 3.6E-10 62.2 9.8 89 31-167 46-134 (383)
148 PF09695 YtfJ_HI0045: Bacteria 98.2 0.00024 5.1E-09 48.2 13.3 142 7-165 2-156 (160)
149 TIGR02196 GlrX_YruB Glutaredox 98.1 2.6E-05 5.7E-10 45.9 7.8 32 36-74 2-33 (74)
150 COG0678 AHP1 Peroxiredoxin [Po 98.1 2.3E-05 5.1E-10 52.3 8.0 130 6-150 3-145 (165)
151 cd03007 PDI_a_ERp29_N PDIa fam 98.1 2.8E-05 6.1E-10 50.5 7.6 42 31-74 17-60 (116)
152 cd02991 UAS_ETEA UAS family, E 98.1 6.2E-05 1.3E-09 49.0 9.3 94 28-169 13-115 (116)
153 PF05176 ATP-synt_10: ATP10 pr 98.0 0.00027 5.9E-09 52.1 11.4 135 8-161 97-244 (252)
154 KOG0912 Thiol-disulfide isomer 97.9 4.1E-05 8.8E-10 57.0 6.0 89 32-167 13-106 (375)
155 PF05988 DUF899: Bacterial pro 97.9 0.00058 1.2E-08 48.5 11.2 85 11-105 45-137 (211)
156 KOG0190 Protein disulfide isom 97.8 3E-05 6.4E-10 61.8 4.3 41 31-71 383-424 (493)
157 COG2143 Thioredoxin-related pr 97.8 0.00061 1.3E-08 46.0 9.5 105 28-165 38-147 (182)
158 TIGR02200 GlrX_actino Glutared 97.8 0.00031 6.8E-09 41.7 7.6 22 36-57 2-23 (77)
159 KOG0541 Alkyl hydroperoxide re 97.7 0.00019 4.2E-09 48.3 6.7 92 4-104 7-111 (171)
160 PF13911 AhpC-TSA_2: AhpC/TSA 97.7 0.00045 9.8E-09 44.7 8.1 83 54-151 2-112 (115)
161 PRK11509 hydrogenase-1 operon 97.7 0.0014 3.1E-08 43.4 10.4 90 33-169 35-126 (132)
162 TIGR02180 GRX_euk Glutaredoxin 97.6 0.0002 4.4E-09 43.4 5.7 47 36-92 1-47 (84)
163 PF13192 Thioredoxin_3: Thiore 97.6 0.00071 1.5E-08 40.5 7.2 31 40-71 6-36 (76)
164 PRK11657 dsbG disulfide isomer 97.6 0.0011 2.3E-08 49.1 9.5 130 27-164 112-249 (251)
165 cd03019 DsbA_DsbA DsbA family, 97.5 0.0011 2.5E-08 45.9 8.8 42 31-73 14-55 (178)
166 PRK10877 protein disulfide iso 97.4 0.0029 6.3E-08 46.2 10.1 43 26-72 101-143 (232)
167 KOG0191 Thioredoxin/protein di 97.3 0.0012 2.6E-08 51.8 7.8 41 32-72 162-203 (383)
168 KOG1731 FAD-dependent sulfhydr 97.3 0.0002 4.3E-09 57.6 3.4 60 33-102 58-120 (606)
169 PF03190 Thioredox_DsbH: Prote 97.3 0.00077 1.7E-08 46.3 5.8 27 26-52 31-57 (163)
170 KOG4277 Uncharacterized conser 97.3 0.00089 1.9E-08 50.1 6.1 35 33-67 44-78 (468)
171 PF13778 DUF4174: Domain of un 97.2 0.008 1.7E-07 39.2 9.7 105 27-166 3-111 (118)
172 COG4312 Uncharacterized protei 97.2 0.0019 4E-08 46.1 7.0 82 16-107 56-145 (247)
173 PF06110 DUF953: Eukaryotic pr 97.2 0.00091 2E-08 43.6 5.0 42 31-73 18-66 (119)
174 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.00068 1.5E-08 48.2 4.5 32 25-56 70-101 (197)
175 cd03023 DsbA_Com1_like DsbA fa 96.9 0.0022 4.7E-08 43.2 4.9 42 31-72 4-45 (154)
176 PRK11200 grxA glutaredoxin 1; 96.8 0.013 2.9E-07 35.6 7.1 37 36-74 3-39 (85)
177 PF13462 Thioredoxin_4: Thiore 96.7 0.0055 1.2E-07 41.7 5.6 51 24-74 4-55 (162)
178 TIGR03143 AhpF_homolog putativ 96.5 0.021 4.5E-07 47.1 8.8 40 32-71 476-515 (555)
179 cd02976 NrdH NrdH-redoxin (Nrd 96.5 0.02 4.4E-07 33.1 6.6 32 36-74 2-33 (73)
180 KOG3425 Uncharacterized conser 96.3 0.014 3E-07 37.8 5.1 43 31-74 24-74 (128)
181 cd03419 GRX_GRXh_1_2_like Glut 96.2 0.019 4.1E-07 34.4 5.5 34 36-74 2-35 (82)
182 TIGR02183 GRXA Glutaredoxin, G 95.9 0.041 8.9E-07 33.6 6.0 37 36-74 2-38 (86)
183 PHA03050 glutaredoxin; Provisi 95.9 0.032 6.9E-07 35.8 5.5 35 36-72 15-49 (108)
184 cd03418 GRX_GRXb_1_3_like Glut 95.9 0.062 1.4E-06 31.5 6.4 32 36-74 2-33 (75)
185 PF00462 Glutaredoxin: Glutare 95.8 0.037 8E-07 31.2 4.9 32 36-74 1-32 (60)
186 TIGR02181 GRX_bact Glutaredoxi 95.7 0.049 1.1E-06 32.5 5.5 20 37-56 2-21 (79)
187 cd02066 GRX_family Glutaredoxi 95.6 0.063 1.4E-06 30.8 5.7 22 36-57 2-23 (72)
188 PF02114 Phosducin: Phosducin; 95.6 0.15 3.2E-06 38.1 8.7 40 32-73 146-185 (265)
189 PRK15317 alkyl hydroperoxide r 95.5 0.12 2.6E-06 42.3 8.8 39 31-71 115-153 (517)
190 TIGR02190 GlrX-dom Glutaredoxi 95.5 0.081 1.8E-06 31.7 5.9 35 33-74 7-41 (79)
191 KOG4498 Uncharacterized conser 95.3 0.19 4.2E-06 35.2 7.8 55 18-72 35-91 (197)
192 cd03027 GRX_DEP Glutaredoxin ( 95.1 0.18 3.9E-06 29.5 6.6 32 36-74 3-34 (73)
193 TIGR03140 AhpF alkyl hydropero 95.1 0.22 4.8E-06 40.8 9.0 39 31-71 116-154 (515)
194 PRK10954 periplasmic protein d 95.0 0.056 1.2E-06 38.7 4.8 52 21-73 24-80 (207)
195 COG0695 GrxC Glutaredoxin and 94.9 0.16 3.5E-06 30.6 6.0 44 36-92 3-46 (80)
196 PRK10329 glutaredoxin-like pro 94.7 0.19 4.1E-06 30.3 5.9 32 36-74 3-34 (81)
197 KOG0913 Thiol-disulfide isomer 94.6 0.034 7.3E-07 40.3 2.8 33 36-68 43-75 (248)
198 PF11009 DUF2847: Protein of u 94.4 0.35 7.6E-06 30.8 6.8 59 31-98 18-76 (105)
199 KOG0911 Glutaredoxin-related p 94.4 0.037 8.1E-07 39.8 2.6 42 31-74 16-57 (227)
200 TIGR02189 GlrX-like_plant Glut 94.2 0.18 3.9E-06 31.7 5.3 22 36-57 10-31 (99)
201 cd03029 GRX_hybridPRX5 Glutare 94.0 0.24 5.2E-06 28.9 5.2 32 36-74 3-34 (72)
202 TIGR02194 GlrX_NrdH Glutaredox 94.0 0.22 4.9E-06 29.1 5.1 31 37-74 2-32 (72)
203 TIGR00365 monothiol glutaredox 93.8 0.54 1.2E-05 29.4 6.8 26 32-57 11-40 (97)
204 PRK10638 glutaredoxin 3; Provi 93.6 0.49 1.1E-05 28.4 6.2 32 36-74 4-35 (83)
205 COG1651 DsbG Protein-disulfide 93.6 0.22 4.7E-06 36.5 5.5 50 19-68 71-120 (244)
206 cd03028 GRX_PICOT_like Glutare 93.5 0.38 8.1E-06 29.6 5.7 27 31-57 6-36 (90)
207 cd02983 P5_C P5 family, C-term 93.5 0.92 2E-05 30.0 7.9 35 134-169 82-117 (130)
208 cd02972 DsbA_family DsbA famil 93.3 0.16 3.4E-06 30.9 3.8 38 36-74 1-38 (98)
209 COG1331 Highly conserved prote 93.3 1.1 2.4E-05 37.7 9.4 22 30-51 41-62 (667)
210 KOG0914 Thioredoxin-like prote 93.1 0.1 2.2E-06 37.6 2.9 43 31-73 143-185 (265)
211 PRK10824 glutaredoxin-4; Provi 92.2 0.69 1.5E-05 30.0 5.7 27 31-57 13-43 (115)
212 TIGR03143 AhpF_homolog putativ 91.9 1.9 4.2E-05 35.7 9.4 40 29-70 363-402 (555)
213 COG4545 Glutaredoxin-related p 91.1 0.38 8.3E-06 28.5 3.2 42 37-92 5-46 (85)
214 PLN03098 LPA1 LOW PSII ACCUMUL 90.8 2.8 6.2E-05 33.7 8.8 65 10-75 274-338 (453)
215 KOG3414 Component of the U4/U6 90.6 3.5 7.6E-05 27.2 8.2 40 31-71 22-61 (142)
216 PF13848 Thioredoxin_6: Thiore 90.6 3.2 7E-05 28.5 8.3 32 133-164 151-183 (184)
217 KOG2507 Ubiquitin regulatory p 90.0 2.6 5.7E-05 33.5 7.8 39 129-167 73-111 (506)
218 COG3054 Predicted transcriptio 89.0 1.5 3.3E-05 29.8 5.1 143 5-164 22-177 (184)
219 PHA03075 glutaredoxin-like pro 88.7 0.45 9.8E-06 30.7 2.5 30 33-62 2-31 (123)
220 cd03036 ArsC_like Arsenate Red 88.7 1.2 2.7E-05 28.5 4.6 48 38-97 3-50 (111)
221 KOG1752 Glutaredoxin and relat 88.5 2 4.4E-05 27.3 5.4 48 32-92 13-60 (104)
222 TIGR01617 arsC_related transcr 88.5 1.2 2.6E-05 28.8 4.5 50 38-99 3-52 (117)
223 cd02977 ArsC_family Arsenate R 87.7 1.5 3.2E-05 27.7 4.5 48 37-96 2-49 (105)
224 PF06053 DUF929: Domain of unk 87.5 1.3 2.9E-05 32.7 4.6 34 31-64 57-90 (249)
225 cd03035 ArsC_Yffb Arsenate Red 87.3 1.9 4.2E-05 27.3 4.8 48 37-96 2-49 (105)
226 cd02979 PHOX_C FAD-dependent P 86.6 8.5 0.00018 26.6 10.6 48 9-56 1-53 (167)
227 cd03032 ArsC_Spx Arsenate Redu 86.3 2.8 6.1E-05 27.0 5.2 49 38-98 4-52 (115)
228 PF02966 DIM1: Mitosis protein 85.8 2.8 6.1E-05 27.8 4.9 43 31-74 19-61 (133)
229 PRK01655 spxA transcriptional 85.3 2.4 5.1E-05 28.1 4.6 49 37-97 3-51 (131)
230 PF07976 Phe_hydrox_dim: Pheno 85.0 7 0.00015 27.1 7.0 71 4-74 28-116 (169)
231 TIGR03759 conj_TIGR03759 integ 84.6 4.4 9.5E-05 28.9 5.8 57 33-102 109-165 (200)
232 PTZ00062 glutaredoxin; Provisi 84.4 4.8 0.0001 28.9 6.1 37 31-74 111-151 (204)
233 PRK10026 arsenate reductase; P 84.0 11 0.00023 25.5 8.6 101 37-163 5-116 (141)
234 TIGR00995 3a0901s06TIC22 chlor 83.6 17 0.00036 27.4 8.9 75 10-102 80-157 (270)
235 KOG4614 Inner membrane protein 83.6 1.7 3.8E-05 31.7 3.5 28 136-163 250-277 (287)
236 PF01323 DSBA: DSBA-like thior 83.2 2.2 4.7E-05 29.7 3.9 41 35-75 1-41 (193)
237 PF11211 DUF2997: Protein of u 82.4 2.7 5.8E-05 22.7 3.2 31 138-168 3-35 (48)
238 PF05768 DUF836: Glutaredoxin- 81.8 3.5 7.6E-05 24.6 4.0 53 36-103 2-54 (81)
239 PRK08294 phenol 2-monooxygenas 80.7 32 0.00069 29.3 10.5 147 5-169 462-633 (634)
240 PRK12559 transcriptional regul 80.2 5.1 0.00011 26.6 4.6 46 36-92 2-47 (131)
241 COG3019 Predicted metal-bindin 80.0 16 0.00034 24.6 8.0 34 34-74 26-59 (149)
242 KOG1364 Predicted ubiquitin re 77.5 3.4 7.4E-05 32.0 3.5 40 129-168 150-190 (356)
243 PF08821 CGGC: CGGC domain; I 76.8 3.2 6.9E-05 26.6 2.8 71 23-97 26-100 (107)
244 cd03073 PDI_b'_ERp72_ERp57 PDI 74.9 19 0.00042 23.0 8.9 31 135-166 79-110 (111)
245 cd03024 DsbA_FrnE DsbA family, 74.1 21 0.00044 25.0 6.7 37 39-75 4-43 (201)
246 PRK13344 spxA transcriptional 73.6 14 0.0003 24.5 5.3 50 38-99 4-53 (132)
247 COG2179 Predicted hydrolase of 73.2 9.7 0.00021 26.5 4.5 61 33-102 29-90 (175)
248 PF06764 DUF1223: Protein of u 72.9 12 0.00026 26.8 5.2 36 36-74 1-37 (202)
249 COG1651 DsbG Protein-disulfide 72.6 1.5 3.2E-05 32.1 0.5 28 33-60 119-146 (244)
250 PRK12759 bifunctional gluaredo 72.3 2.9 6.3E-05 33.4 2.1 32 36-74 4-35 (410)
251 KOG1672 ATP binding protein [P 70.5 13 0.00028 26.6 4.7 40 31-72 83-122 (211)
252 PF13462 Thioredoxin_4: Thiore 70.4 6.7 0.00015 26.3 3.4 31 129-165 132-162 (162)
253 PF04278 Tic22: Tic22-like fam 67.6 51 0.0011 24.9 12.2 59 10-74 73-136 (274)
254 cd03072 PDI_b'_ERp44 PDIb' fam 67.1 30 0.00065 22.0 7.9 35 135-169 75-110 (111)
255 PF05673 DUF815: Protein of un 65.7 36 0.00078 25.3 6.4 96 34-145 54-149 (249)
256 cd03025 DsbA_FrnE_like DsbA fa 64.9 9.8 0.00021 26.4 3.4 27 36-62 3-29 (193)
257 cd03033 ArsC_15kD Arsenate Red 62.2 34 0.00073 22.0 5.2 47 38-96 4-50 (113)
258 PF06953 ArsD: Arsenical resis 61.7 43 0.00094 22.0 6.3 28 48-75 23-50 (123)
259 cd03060 GST_N_Omega_like GST_N 59.7 10 0.00022 21.7 2.3 30 38-72 3-32 (71)
260 TIGR00014 arsC arsenate reduct 59.7 37 0.0008 21.7 5.1 48 38-97 3-50 (114)
261 PF08806 Sep15_SelM: Sep15/Sel 58.9 14 0.00031 22.1 2.9 32 135-166 43-75 (78)
262 COG2761 FrnE Predicted dithiol 57.8 53 0.0012 24.1 6.1 38 33-70 4-43 (225)
263 KOG3384 Selenoprotein [General 57.8 33 0.00072 23.0 4.5 36 135-170 118-154 (154)
264 PF02563 Poly_export: Polysacc 57.1 14 0.00029 22.2 2.6 33 137-169 32-69 (82)
265 KOG3170 Conserved phosducin-li 56.6 23 0.0005 25.5 3.9 40 31-72 110-149 (240)
266 PF01323 DSBA: DSBA-like thior 55.6 16 0.00034 25.3 3.1 31 129-164 163-193 (193)
267 KOG1615 Phosphoserine phosphat 54.0 34 0.00075 24.6 4.4 43 49-100 88-130 (227)
268 COG1535 EntB Isochorismate hyd 51.7 22 0.00048 25.1 3.2 52 38-91 44-95 (218)
269 COG2607 Predicted ATPase (AAA+ 50.4 66 0.0014 24.2 5.6 83 52-145 100-182 (287)
270 PRK10853 putative reductase; P 50.2 61 0.0013 21.0 5.0 48 38-97 4-51 (118)
271 cd03031 GRX_GRX_like Glutaredo 49.9 7.5 0.00016 26.4 0.7 15 43-57 15-29 (147)
272 cd03034 ArsC_ArsC Arsenate Red 49.5 60 0.0013 20.7 4.8 48 38-97 3-50 (112)
273 PRK05778 2-oxoglutarate ferred 49.1 16 0.00035 28.0 2.4 20 41-61 18-37 (301)
274 cd03051 GST_N_GTT2_like GST_N 48.3 20 0.00043 20.2 2.3 20 38-57 3-22 (74)
275 PF10281 Ish1: Putative stress 48.0 32 0.0007 17.2 2.8 19 81-100 3-21 (38)
276 PF14307 Glyco_tran_WbsX: Glyc 47.9 55 0.0012 25.5 5.3 44 31-74 157-200 (345)
277 KOG2961 Predicted hydrolase (H 46.7 96 0.0021 21.5 9.0 105 10-121 20-132 (190)
278 PF07411 DUF1508: Domain of un 46.6 46 0.00099 17.8 3.4 31 136-166 7-37 (49)
279 PF11760 CbiG_N: Cobalamin syn 45.8 62 0.0013 19.7 4.2 34 135-168 39-74 (84)
280 COG0552 FtsY Signal recognitio 45.8 1.5E+02 0.0032 23.3 9.0 110 31-166 136-246 (340)
281 TIGR01616 nitro_assoc nitrogen 45.7 85 0.0018 20.6 5.6 46 36-92 3-48 (126)
282 PF06491 Disulph_isomer: Disul 45.1 48 0.001 22.1 3.8 34 134-168 96-133 (136)
283 cd03040 GST_N_mPGES2 GST_N fam 44.3 21 0.00047 20.5 2.0 18 39-56 5-22 (77)
284 TIGR01352 tonB_Cterm TonB fami 43.0 43 0.00093 19.0 3.2 15 136-150 14-28 (74)
285 PRK12359 flavodoxin FldB; Prov 42.7 84 0.0018 21.9 5.0 30 138-167 131-165 (172)
286 PF08235 LNS2: LNS2 (Lipin/Ned 42.4 38 0.00082 23.3 3.2 63 17-92 3-65 (157)
287 PF03544 TonB_C: Gram-negative 42.2 15 0.00032 21.4 1.1 33 136-168 20-53 (79)
288 PRK11867 2-oxoglutarate ferred 41.7 25 0.00054 26.7 2.5 21 40-61 16-36 (286)
289 PF13103 TonB_2: TonB C termin 41.6 45 0.00098 19.7 3.2 32 136-167 30-62 (85)
290 COG1129 MglA ABC-type sugar tr 41.3 1.2E+02 0.0026 25.2 6.3 38 45-91 175-212 (500)
291 cd03041 GST_N_2GST_N GST_N fam 41.3 27 0.00058 20.3 2.1 20 38-57 4-23 (77)
292 PF13743 Thioredoxin_5: Thiore 41.2 39 0.00084 23.5 3.2 30 38-68 2-31 (176)
293 cd00570 GST_N_family Glutathio 40.9 30 0.00064 18.7 2.3 29 39-72 4-32 (71)
294 PF14427 Pput2613-deam: Pput_2 40.8 45 0.00098 21.4 3.1 44 11-54 41-88 (118)
295 COG1393 ArsC Arsenate reductas 40.6 1E+02 0.0022 20.0 5.1 50 38-99 5-54 (117)
296 TIGR03027 pepcterm_export puta 40.0 55 0.0012 22.4 3.8 33 136-168 21-58 (165)
297 TIGR01689 EcbF-BcbF capsule bi 39.9 90 0.0019 20.5 4.6 49 53-102 28-83 (126)
298 COG2761 FrnE Predicted dithiol 39.8 56 0.0012 24.0 3.9 36 129-169 180-215 (225)
299 PF07700 HNOB: Heme NO binding 39.5 1.3E+02 0.0027 20.7 5.6 55 8-72 113-167 (171)
300 cd03022 DsbA_HCCA_Iso DsbA fam 39.3 30 0.00064 23.9 2.5 35 39-74 4-38 (192)
301 TIGR02177 PorB_KorB 2-oxoacid: 38.5 30 0.00065 26.3 2.4 14 155-168 161-174 (287)
302 cd03037 GST_N_GRX2 GST_N famil 38.3 28 0.00061 19.6 1.9 18 39-56 4-21 (71)
303 PF05872 DUF853: Bacterial pro 36.9 1.4E+02 0.0031 24.6 6.0 44 32-75 253-300 (502)
304 PF05116 S6PP: Sucrose-6F-phos 36.5 1.7E+02 0.0037 21.5 7.0 46 45-99 15-60 (247)
305 PF07801 DUF1647: Protein of u 36.4 1.4E+02 0.0029 20.3 5.3 63 12-74 37-100 (142)
306 PRK11866 2-oxoacid ferredoxin 35.9 53 0.0012 24.9 3.4 21 41-61 7-29 (279)
307 PF10589 NADH_4Fe-4S: NADH-ubi 35.1 6.1 0.00013 21.0 -1.2 21 43-63 18-38 (46)
308 PF03960 ArsC: ArsC family; I 35.0 1E+02 0.0022 19.4 4.2 49 40-100 2-50 (110)
309 cd03059 GST_N_SspA GST_N famil 34.7 37 0.00079 19.1 2.0 17 39-55 4-20 (73)
310 PF04723 GRDA: Glycine reducta 34.5 53 0.0011 22.1 2.8 38 35-72 31-75 (150)
311 PLN02640 glucose-6-phosphate 1 34.1 2.9E+02 0.0062 23.5 7.5 42 33-74 88-130 (573)
312 cd02990 UAS_FAF1 UAS family, F 33.7 96 0.0021 20.8 4.0 38 131-168 94-134 (136)
313 PF12690 BsuPI: Intracellular 33.5 46 0.00099 20.0 2.3 17 136-152 27-43 (82)
314 TIGR01753 flav_short flavodoxi 33.3 1.3E+02 0.0029 19.3 4.9 7 85-91 100-106 (140)
315 TIGR03406 FeS_long_SufT probab 33.2 1.7E+02 0.0037 20.5 6.0 53 35-94 117-171 (174)
316 KOG3859 Septins (P-loop GTPase 32.9 16 0.00034 27.9 0.2 45 30-74 173-218 (406)
317 PHA02762 hypothetical protein; 32.9 70 0.0015 17.6 2.6 16 136-151 30-45 (62)
318 COG3411 Ferredoxin [Energy pro 32.7 76 0.0016 18.3 2.9 27 138-168 20-46 (64)
319 PF12017 Tnp_P_element: Transp 32.1 1.5E+02 0.0032 21.9 5.1 25 51-75 195-219 (236)
320 TIGR02742 TrbC_Ftype type-F co 32.0 1.6E+02 0.0034 19.6 7.8 16 129-144 67-82 (130)
321 PRK13265 glycine/sarcosine/bet 31.6 64 0.0014 21.7 2.8 38 35-72 32-76 (154)
322 cd02981 PDI_b_family Protein D 31.3 1.2E+02 0.0026 18.1 8.0 36 32-71 17-52 (97)
323 KOG2603 Oligosaccharyltransfer 30.8 2.6E+02 0.0056 21.8 9.2 48 16-63 44-95 (331)
324 PF03227 GILT: Gamma interfero 29.9 87 0.0019 19.8 3.3 36 36-71 3-42 (108)
325 PF10673 DUF2487: Protein of u 29.8 73 0.0016 21.5 2.9 20 53-72 72-92 (142)
326 PF08496 Peptidase_S49_N: Pept 29.7 42 0.0009 23.0 1.8 31 133-168 96-126 (155)
327 PF00571 CBS: CBS domain CBS d 29.7 93 0.002 16.3 3.3 24 136-163 32-55 (57)
328 cd08344 MhqB_like_N N-terminal 29.5 79 0.0017 19.5 3.1 18 136-153 93-110 (112)
329 PRK11869 2-oxoacid ferredoxin 29.4 38 0.00082 25.7 1.7 21 41-61 8-30 (280)
330 KOG3357 Uncharacterized conser 28.8 28 0.0006 23.0 0.8 39 7-47 89-129 (167)
331 PF04134 DUF393: Protein of un 28.8 38 0.00082 21.3 1.4 30 39-71 2-31 (114)
332 COG0499 SAM1 S-adenosylhomocys 28.6 3E+02 0.0065 22.1 6.4 71 61-150 65-135 (420)
333 PF02670 DXP_reductoisom: 1-de 28.5 1.2E+02 0.0026 20.1 3.8 39 56-103 16-54 (129)
334 PF09494 Slx4: Slx4 endonuclea 27.8 91 0.002 17.6 2.8 16 83-99 46-61 (64)
335 COG1370 Prefoldin, molecular c 27.5 90 0.002 21.3 3.0 27 134-160 114-140 (155)
336 PF10813 DUF2733: Protein of u 27.5 36 0.00079 16.6 0.9 14 16-29 14-27 (32)
337 PF11287 DUF3088: Protein of u 27.4 1.4E+02 0.003 19.3 3.7 50 43-102 23-72 (112)
338 COG3011 Predicted thiol-disulf 27.4 2E+02 0.0043 19.4 7.2 39 31-72 5-43 (137)
339 PF05228 CHASE4: CHASE4 domain 26.9 77 0.0017 21.1 2.8 13 136-148 52-64 (161)
340 PF03259 Robl_LC7: Roadblock/L 26.7 53 0.0011 19.5 1.8 14 136-149 17-30 (91)
341 PRK06756 flavodoxin; Provision 26.6 1.8E+02 0.004 19.1 4.6 7 85-91 104-110 (148)
342 cd03045 GST_N_Delta_Epsilon GS 26.6 68 0.0015 18.0 2.2 18 39-56 4-21 (74)
343 PRK13730 conjugal transfer pil 26.4 2.6E+02 0.0056 20.3 7.7 28 129-158 158-185 (212)
344 KOG0780 Signal recognition par 26.1 2.3E+02 0.005 23.0 5.4 62 30-98 97-158 (483)
345 PRK15383 type III secretion sy 26.1 1.9E+02 0.0042 21.6 4.7 84 6-94 18-111 (335)
346 PF13894 zf-C2H2_4: C2H2-type 25.9 15 0.00033 15.4 -0.6 16 44-59 3-18 (24)
347 PF13344 Hydrolase_6: Haloacid 25.2 1.8E+02 0.0038 18.0 4.0 43 51-99 16-58 (101)
348 PF01216 Calsequestrin: Calseq 24.8 3.6E+02 0.0078 21.5 10.6 32 135-168 114-145 (383)
349 PF02743 Cache_1: Cache domain 24.8 42 0.00092 19.5 1.1 15 136-150 55-69 (81)
350 cd03021 DsbA_GSTK DsbA family, 24.2 2.6E+02 0.0057 19.7 5.6 37 38-75 5-41 (209)
351 TIGR03831 YgiT_finger YgiT-typ 24.2 49 0.0011 16.8 1.1 19 30-48 20-39 (46)
352 PRK13601 putative L7Ae-like ri 24.1 1.7E+02 0.0036 17.6 3.6 38 57-99 16-53 (82)
353 PF11072 DUF2859: Protein of u 24.0 2.2E+02 0.0047 19.3 4.4 35 49-91 73-107 (142)
354 PF14903 WG_beta_rep: WG conta 23.9 57 0.0012 15.3 1.3 11 139-149 3-13 (35)
355 TIGR02652 conserved hypothetic 23.8 24 0.00051 23.7 -0.2 15 42-56 10-24 (163)
356 PF09654 DUF2396: Protein of u 23.8 23 0.0005 23.7 -0.3 15 42-56 7-21 (161)
357 PRK15175 Vi polysaccharide exp 23.7 1.1E+02 0.0024 24.1 3.4 32 138-169 105-141 (355)
358 COG3322 Predicted periplasmic 23.7 93 0.002 23.9 2.9 15 136-150 106-120 (295)
359 cd02008 TPP_IOR_alpha Thiamine 23.6 87 0.0019 21.6 2.6 25 41-66 4-28 (178)
360 PF08394 Arc_trans_TRASH: Arch 23.3 77 0.0017 16.0 1.7 21 32-52 10-34 (37)
361 PRK08132 FAD-dependent oxidore 23.3 4.3E+02 0.0094 21.9 10.3 34 7-41 428-462 (547)
362 PTZ00304 NADH dehydrogenase [u 23.1 69 0.0015 26.2 2.2 21 43-63 369-389 (461)
363 cd07244 FosA FosA, a Fosfomyci 22.9 1.3E+02 0.0029 18.7 3.2 18 136-153 94-111 (121)
364 PRK10144 formate-dependent nit 22.8 75 0.0016 21.0 2.0 16 82-97 74-89 (126)
365 COG0560 SerB Phosphoserine pho 22.8 3E+02 0.0064 19.8 6.6 45 48-101 76-120 (212)
366 COG0821 gcpE 1-hydroxy-2-methy 22.8 3.9E+02 0.0084 21.1 7.3 61 35-107 23-83 (361)
367 PF13021 DUF3885: Domain of un 22.5 1.2E+02 0.0027 15.4 2.5 12 61-72 4-15 (38)
368 PF02120 Flg_hook: Flagellar h 22.4 1.4E+02 0.003 17.5 3.0 44 31-74 34-77 (85)
369 COG1791 Uncharacterized conser 22.3 2.9E+02 0.0062 19.5 8.7 55 41-100 43-97 (181)
370 COG1013 PorB Pyruvate:ferredox 22.2 67 0.0014 24.6 1.9 20 42-62 16-35 (294)
371 PF01106 NifU: NifU-like domai 22.1 1.7E+02 0.0037 16.8 5.0 33 21-54 15-47 (68)
372 TIGR02949 anti_SigH_actin anti 22.1 53 0.0011 19.8 1.1 22 42-63 37-58 (84)
373 PHA01548 hypothetical protein 22.0 1.9E+02 0.004 19.4 3.6 28 136-168 106-133 (167)
374 PRK10200 putative racemase; Pr 21.9 1.8E+02 0.004 21.2 4.1 45 49-103 59-103 (230)
375 cd03063 TRX_Fd_FDH_beta TRX-li 21.8 2.1E+02 0.0045 17.7 3.9 31 135-168 49-79 (92)
376 PRK02048 4-hydroxy-3-methylbut 21.6 3.2E+02 0.007 23.4 5.7 74 33-113 25-99 (611)
377 PF06122 TraH: Conjugative rel 21.3 50 0.0011 26.0 1.1 23 41-63 94-116 (361)
378 PRK14324 glmM phosphoglucosami 20.9 4E+02 0.0086 21.6 6.2 11 137-147 248-258 (446)
379 KOG0100 Molecular chaperones G 20.7 2.7E+02 0.0059 22.8 4.9 38 129-166 499-552 (663)
380 PF02625 XdhC_CoxI: XdhC and C 20.7 1.6E+02 0.0035 17.0 3.0 32 136-167 28-59 (71)
381 TIGR03147 cyt_nit_nrfF cytochr 20.5 89 0.0019 20.7 2.0 16 82-97 74-89 (126)
382 COG2326 Uncharacterized conser 20.3 3.6E+02 0.0078 20.4 5.2 30 136-165 133-165 (270)
No 1
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=1.1e-35 Score=211.19 Aligned_cols=167 Identities=43% Similarity=0.710 Sum_probs=145.8
Q ss_pred CCCCCCCCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCC
Q 030845 2 GASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEP 81 (170)
Q Consensus 2 ~~~~~~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~ 81 (170)
-.+....+..+|+|++++.+|+.+++++++||++||+||++|||+|..++|.|++++++++++|+.||+|++|.+.+++.
T Consensus 9 ~~~~~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~ 88 (199)
T PTZ00056 9 TVSKDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEF 88 (199)
T ss_pred cccchhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCC
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999998777777
Q ss_pred CCHHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccC-----cccccCceEEEECCCCcEEEecCCCCCc
Q 030845 82 GTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFG-----SRIKWNFTKFLVDTEGNVIGRYSPTTSP 156 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~p~~~lid~~G~i~~~~~g~~~~ 156 (170)
++.+++++|+ ++++++||++.|.+..|.....++.++.......+. ..+.+.|++||||++|+|+.++.|..++
T Consensus 89 d~~e~~~~f~-~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~ 167 (199)
T PTZ00056 89 PNTKDIRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEP 167 (199)
T ss_pred CCHHHHHHHH-HHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCH
Confidence 8899999999 589999999998888888888888877644432221 2455667899999999999999998888
Q ss_pred hhHHHHHHHHhhc
Q 030845 157 MAIEGDIKNALGD 169 (170)
Q Consensus 157 ~~~~~~l~~ll~~ 169 (170)
+++.+.|++++++
T Consensus 168 ~~l~~~I~~ll~~ 180 (199)
T PTZ00056 168 LELEKKIAELLGV 180 (199)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999998864
No 2
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=1.8e-35 Score=205.10 Aligned_cols=162 Identities=68% Similarity=1.147 Sum_probs=143.3
Q ss_pred CCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHH
Q 030845 8 PQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEA 87 (170)
Q Consensus 8 ~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 87 (170)
.+..+|+|++++.+|+.+++++++||++||+||++|||+|..+++.|++++++|+++|+.|++|++|.+..++.++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 44779999999999999999999999999999999999999999999999999999999999999987666666677787
Q ss_pred HHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 88 HEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 88 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
+.+..++++++||++.+.+..+......|+.+.....+..+.++.+.|++||||++|+|++++.|..+++++.+.|+++|
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 77654688999999987777877788888888766555555668888999999999999999999999999999999998
Q ss_pred hc
Q 030845 168 GD 169 (170)
Q Consensus 168 ~~ 169 (170)
++
T Consensus 165 ~~ 166 (167)
T PLN02412 165 GQ 166 (167)
T ss_pred hh
Confidence 75
No 3
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=1.6e-35 Score=213.70 Aligned_cols=162 Identities=64% Similarity=1.105 Sum_probs=142.8
Q ss_pred CCCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHH
Q 030845 7 VPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQE 86 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 86 (170)
..+..+|+|++.|.+|+.+++++++||++||+||++||++|..+++.|++++++++++|+.+|+|++|.+..+++++.++
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~e 153 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 153 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999998777777778899
Q ss_pred HHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 87 AHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
+++|+.++++++||++.+.|..|......|++++....+..+..++++|++||||++|+|+.++.|..+++++++.|+++
T Consensus 154 i~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 154 IKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred HHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 99998557899999987667677777778877654444433445788899999999999999999999999999999999
Q ss_pred hh
Q 030845 167 LG 168 (170)
Q Consensus 167 l~ 168 (170)
|+
T Consensus 234 L~ 235 (236)
T PLN02399 234 LA 235 (236)
T ss_pred hc
Confidence 86
No 4
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=100.00 E-value=2e-33 Score=196.19 Aligned_cols=159 Identities=43% Similarity=0.772 Sum_probs=143.7
Q ss_pred CcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHH
Q 030845 10 KSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHE 89 (170)
Q Consensus 10 ~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~ 89 (170)
.++++|++.+++|+.++|++++||++||+|||+||+.|. +++.|++++++|+++|+.|++++++.++.+++++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 468999999999999999999999999999999999995 7999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCC--------------------ccCcccccCceEEEECCCCcEEEe
Q 030845 90 FACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTG--------------------YFGSRIKWNFTKFLVDTEGNVIGR 149 (170)
Q Consensus 90 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~v~~~p~~~lid~~G~i~~~ 149 (170)
|++.+++++||++++.+.+|....++|.+++..... ..+..|+|+.+-||||++|+++.|
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r 161 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR 161 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence 995479999999999999999999999999866541 112468999999999999999999
Q ss_pred cCCCCCchh--HHHHHHHHhhc
Q 030845 150 YSPTTSPMA--IEGDIKNALGD 169 (170)
Q Consensus 150 ~~g~~~~~~--~~~~l~~ll~~ 169 (170)
+.+...|.+ +.++|+++|.+
T Consensus 162 ~~~~~~p~~~~i~~~i~~~l~~ 183 (183)
T PRK10606 162 FSPDMTPEDPIVMESIKLALAK 183 (183)
T ss_pred ECCCCCCCHHHHHHHHHHHhcC
Confidence 998888877 99999988753
No 5
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=100.00 E-value=1.6e-33 Score=192.85 Aligned_cols=151 Identities=58% Similarity=1.033 Sum_probs=123.2
Q ss_pred cccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHH
Q 030845 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEF 90 (170)
Q Consensus 11 ~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~ 90 (170)
.+|+|++.|.+|+.+++++++||++||+||++||| |..++|.|++++++++++|+.+++|++|.+..++.++.+.+++|
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred CcceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 37999999999999999999999999999999999 99999999999999998899999999886555556678899999
Q ss_pred HHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 91 ACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 91 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
++++++++||++.|.+..+......|..+....++..+..+.+.+++||||++|+|++++.|..+++++.+.
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 953379999999876666665566676543333221122455567999999999999999998877766553
No 6
>PTZ00256 glutathione peroxidase; Provisional
Probab=100.00 E-value=5.9e-33 Score=195.25 Aligned_cols=162 Identities=42% Similarity=0.788 Sum_probs=136.8
Q ss_pred CCCCcccceEeecCCCCeeecCccCCcEE-EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHH
Q 030845 7 VPQKSIYEFTVKDSKGKDVDLSIYKGKVL-LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQ 85 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~v~l~~~~gk~~-ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 85 (170)
.++..+|+|++++.+|+.+++++++||++ |+.+|++|||+|..++|.|++++++|+++|+.+++|++|.+.++++++.+
T Consensus 15 ~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 15 PPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence 46778999999999999999999999965 55669999999999999999999999999999999999876666666778
Q ss_pred HHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCcc--CcccccCc---eEEEECCCCcEEEecCCCCCchhHH
Q 030845 86 EAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYF--GSRIKWNF---TKFLVDTEGNVIGRYSPTTSPMAIE 160 (170)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~p---~~~lid~~G~i~~~~~g~~~~~~~~ 160 (170)
++++|+.++++++||++.|.+..+....++|+++........ .+++..+| ++||||++|+|+.++.|..+++++.
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~ 174 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMI 174 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHH
Confidence 899998557899999998877788777788887776554321 12454556 5799999999999999988888999
Q ss_pred HHHHHHhh
Q 030845 161 GDIKNALG 168 (170)
Q Consensus 161 ~~l~~ll~ 168 (170)
+.|+++++
T Consensus 175 ~~I~~ll~ 182 (183)
T PTZ00256 175 QDIEKLLN 182 (183)
T ss_pred HHHHHHhc
Confidence 99998886
No 7
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=100.00 E-value=3.4e-32 Score=186.47 Aligned_cols=148 Identities=42% Similarity=0.763 Sum_probs=125.9
Q ss_pred ccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHH
Q 030845 12 IYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFA 91 (170)
Q Consensus 12 ~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 91 (170)
+.+|++.+.+|+.+++++++||++||+||++|||+|..+++.|++++++|+++|+.+++|+++.++..++++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999998776666677889999999
Q ss_pred HHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCce----EEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 92 CTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFT----KFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 92 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~----~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
+++++++||++.|.+..+......|++.... ....|+ +||||++|+|+.++.|..+++++.+.|++++
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~--------~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDS--------SKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhc--------CCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 4348999999987666666666666554321 112355 9999999999999999999999999998775
No 8
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-31 Score=174.48 Aligned_cols=159 Identities=58% Similarity=0.983 Sum_probs=151.2
Q ss_pred CcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHH
Q 030845 10 KSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHE 89 (170)
Q Consensus 10 ~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~ 89 (170)
..+.+|++++.+|++++|++++||++||.-.||.|+..+ +...|+.+|++|+++|++|+++.+|+++.|++.+.+++++
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHH
Confidence 467899999999999999999999999999999999986 9999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCc-cCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 90 FACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGY-FGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 90 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
|+..+|+++||++..++..|..+.++|+++..+.++. .+..|.|..+-||||++|+++.|+.+...|+++...|+++|+
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 9999999999999999999999999999999998874 348999999999999999999999999999999999999986
Q ss_pred c
Q 030845 169 D 169 (170)
Q Consensus 169 ~ 169 (170)
+
T Consensus 162 ~ 162 (162)
T COG0386 162 E 162 (162)
T ss_pred C
Confidence 4
No 9
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-28 Score=162.39 Aligned_cols=163 Identities=61% Similarity=1.045 Sum_probs=155.8
Q ss_pred CCCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHH
Q 030845 7 VPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQE 86 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 86 (170)
.....+.+|+..|.+|+.++|++++||++||.--||.|+.-......|.+++++|+++|++|++..+++++.||+.+.++
T Consensus 9 ~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 9 DEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 87 AHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
+..+++.+++..||++..++.+|....++|.+++....+.+|..|.|..+-||||++|+++.|+.+..++.++...|+++
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~l 168 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKL 168 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hhc
Q 030845 167 LGD 169 (170)
Q Consensus 167 l~~ 169 (170)
|++
T Consensus 169 L~~ 171 (171)
T KOG1651|consen 169 LAQ 171 (171)
T ss_pred hcC
Confidence 863
No 10
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.6e-28 Score=163.68 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=114.0
Q ss_pred CCCCCCcccceEeecCCCCeeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCC
Q 030845 5 ESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 83 (170)
.+..|..+|+|+|++.+|+.++|++++||++||+|| ..++|.|..+...|++.++++++.|++|++||.| +
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s 74 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S 74 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 467899999999999999999999999999999998 7899999999999999999999999999999976 7
Q ss_pred HHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 84 SQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
.+..++|+ ++++++|++++|.+... ...|............ -.-..+++||||++|+|+..+.......+..+.+
T Consensus 75 ~~~~~~F~-~k~~L~f~LLSD~~~~v---~~~ygv~~~k~~~gk~-~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl 149 (157)
T COG1225 75 PKSHKKFA-EKHGLTFPLLSDEDGEV---AEAYGVWGEKKMYGKE-YMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVL 149 (157)
T ss_pred HHHHHHHH-HHhCCCceeeECCcHHH---HHHhCcccccccCccc-cccccceEEEECCCCeEEEEecCCCCcccHHHHH
Confidence 99999999 79999999999866443 3333332221110000 0122478999999999999985433333333333
No 11
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.95 E-value=7.9e-28 Score=169.53 Aligned_cols=135 Identities=18% Similarity=0.239 Sum_probs=110.3
Q ss_pred CCCCcccceEeecCC--CCeeecCcc-CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCC
Q 030845 7 VPQKSIYEFTVKDSK--GKDVDLSIY-KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~--G~~v~l~~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 83 (170)
..+..+|+|++.+.+ |+.++++++ +||+++|+||++||++|+.++|.|+++.+ +++.+++|+.+. +
T Consensus 40 ~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~-------~ 108 (185)
T PRK15412 40 LIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKD-------D 108 (185)
T ss_pred hcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------C
Confidence 457789999999988 477777765 79999999999999999999999988854 479999999763 5
Q ss_pred HHHHHHHHHHhcCCCCce-eEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 84 SQEAHEFACTRYKAEYPI-FQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
.+..++|+ ++++.+|++ +.| ..+... .. +++..+|++|+||++|+|++++.|..+.+++.+.
T Consensus 109 ~~~~~~~~-~~~~~~~~~~~~D--~~~~~~----~~----------~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~ 171 (185)
T PRK15412 109 RQKAISWL-KELGNPYALSLFD--GDGMLG----LD----------LGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESE 171 (185)
T ss_pred HHHHHHHH-HHcCCCCceEEEc--CCccHH----Hh----------cCCCcCCeEEEECCCceEEEEEecCCCHHHHHHH
Confidence 67888999 588999995 433 222211 11 4788899999999999999999999999999999
Q ss_pred HHHHhhc
Q 030845 163 IKNALGD 169 (170)
Q Consensus 163 l~~ll~~ 169 (170)
|+.++++
T Consensus 172 i~~~~~~ 178 (185)
T PRK15412 172 IKPLWEK 178 (185)
T ss_pred HHHHHHH
Confidence 9988763
No 12
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.95 E-value=4.6e-28 Score=164.74 Aligned_cols=123 Identities=28% Similarity=0.442 Sum_probs=103.2
Q ss_pred CCCcccceEeec--CCCCeeecCccCCcEEEEEEecC-CCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCH
Q 030845 8 PQKSIYEFTVKD--SKGKDVDLSIYKGKVLLIVNVAS-KCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTS 84 (170)
Q Consensus 8 ~~~~~p~f~l~~--~~G~~v~l~~~~gk~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 84 (170)
+|..+|+|++++ .+|+++++++++||++||+||++ |||+|..++|.|.++++++++.++.+++|+.+. .
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~--------~ 73 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD--------D 73 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS--------S
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC--------C
Confidence 688999999966 99999999999999999999999 999999999999999999999999999999873 3
Q ss_pred HHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccc---------cCceEEEECCCCcEEEecCCCCC
Q 030845 85 QEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIK---------WNFTKFLVDTEGNVIGRYSPTTS 155 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~p~~~lid~~G~i~~~~~g~~~ 155 (170)
..+.+|+ ++++.+|+++.|. . ..+... +++. .+|+++|||++|+|++++.|..+
T Consensus 74 ~~~~~~~-~~~~~~~~~~~D~--~----~~~~~~----------~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 74 PPVREFL-KKYGINFPVLSDP--D----GALAKA----------LGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHHH-HHTTTTSEEEEET--T----SHHHHH----------TTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHHH-HhhCCCceEEech--H----HHHHHH----------hCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 3488998 5789999998762 1 223333 2444 78999999999999999988666
No 13
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.95 E-value=5.7e-27 Score=154.99 Aligned_cols=117 Identities=28% Similarity=0.489 Sum_probs=101.8
Q ss_pred CCCcccceEeecCCCCeeecCccCCcEEEEEEecC-CCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHH
Q 030845 8 PQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVAS-KCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQE 86 (170)
Q Consensus 8 ~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 86 (170)
+|.++|+|++++.+|+.+++++++||++||+||++ |||.|..+++.|+++++++++.|+.+++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 58899999999999999999999999999999988 99999999999999999999999999999987 5778
Q ss_pred HHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccc------cCceEEEECCCCcEEEe
Q 030845 87 AHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIK------WNFTKFLVDTEGNVIGR 149 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~p~~~lid~~G~i~~~ 149 (170)
.++|+ ++++.+||++.|.+ ..+.+. +++. ..|++||||++|+|+++
T Consensus 73 ~~~~~-~~~~~~~~~~~D~~------~~~~~~----------~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFL-EEYGLPFPVLSDPD------GELAKA----------FGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHH-HHHTCSSEEEEETT------SHHHHH----------TTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhhh-hhhccccccccCcc------hHHHHH----------cCCccccCCceEeEEEEECCCCEEEeC
Confidence 99998 58899999997622 122222 2344 78999999999999975
No 14
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.95 E-value=8.3e-27 Score=162.54 Aligned_cols=144 Identities=18% Similarity=0.321 Sum_probs=119.2
Q ss_pred CCcccceEeecCCCCeeecCcc-CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHH
Q 030845 9 QKSIYEFTVKDSKGKDVDLSIY-KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEA 87 (170)
Q Consensus 9 ~~~~p~f~l~~~~G~~v~l~~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 87 (170)
|..+|+|++.+.+|+.++++++ +||++||+||++|||.|..+++.|.+++++++++++.+++|++|+...++.++.+.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 4679999999999999999998 899999999999999999999999999999998889999999986444445678999
Q ss_pred HHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecC---------CCCCchh
Q 030845 88 HEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYS---------PTTSPMA 158 (170)
Q Consensus 88 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~---------g~~~~~~ 158 (170)
++|+ ++++.+|+++.|.+ + .+.+. +++...|++||||++|+|+++.. +..+..+
T Consensus 81 ~~~~-~~~~~~~~~l~D~~--~----~~~~~----------~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 81 KAKA-KEHGYPFPYLLDET--Q----EVAKA----------YGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHH-HHCCCCceEEECCc--h----HHHHH----------cCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 9999 58899999997532 1 22222 36777899999999999998741 2234567
Q ss_pred HHHHHHHHhhc
Q 030845 159 IEGDIKNALGD 169 (170)
Q Consensus 159 ~~~~l~~ll~~ 169 (170)
+.+.|+++++.
T Consensus 144 ~~~~i~~~l~~ 154 (171)
T cd02969 144 LRAALDALLAG 154 (171)
T ss_pred HHHHHHHHHcC
Confidence 89999888753
No 15
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.95 E-value=1.3e-26 Score=161.65 Aligned_cols=138 Identities=23% Similarity=0.376 Sum_probs=119.6
Q ss_pred CCCCCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCH
Q 030845 5 ESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTS 84 (170)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 84 (170)
...++..+|+|++.+.+|+.+++++++||+++|+||++||++|+.+++.|.++++++++.++.+++|+.|. +.
T Consensus 34 ~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~-------~~ 106 (173)
T PRK03147 34 KVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-------TE 106 (173)
T ss_pred ccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC-------CH
Confidence 35688899999999999999999999999999999999999999999999999999998889999999874 67
Q ss_pred HHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHH
Q 030845 85 QEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIK 164 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 164 (170)
+.+++|+ ++++.+|+++.|.. ..+.+. +++..+|++|+||++|+++..+.|..+.+++.+.|+
T Consensus 107 ~~~~~~~-~~~~~~~~~~~d~~------~~~~~~----------~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~ 169 (173)
T PRK03147 107 LAVKNFV-NRYGLTFPVAIDKG------RQVIDA----------YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLE 169 (173)
T ss_pred HHHHHHH-HHhCCCceEEECCc------chHHHH----------cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 8889999 58899999886422 122222 478888999999999999999999888888888887
Q ss_pred HH
Q 030845 165 NA 166 (170)
Q Consensus 165 ~l 166 (170)
++
T Consensus 170 ~~ 171 (173)
T PRK03147 170 KI 171 (173)
T ss_pred Hh
Confidence 65
No 16
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.94 E-value=1.3e-26 Score=158.96 Aligned_cols=146 Identities=13% Similarity=0.176 Sum_probs=109.3
Q ss_pred CCCCCCcccceEeecCCCCeeecCccCCcEEEEEEecC-CCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCC
Q 030845 5 ESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVAS-KCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 83 (170)
....|..+|+|++++.+|+.+++++++||++||+||++ |||.|+.+++.|.++++++++.|+++|+|+.| +
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~ 74 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------K 74 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------C
Confidence 45678999999999999999999999999999999976 78889999999999999999999999999976 5
Q ss_pred HHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 84 SQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
.+.+++|+ ++++.+|+++.|. .+. ....|+..........++.. ..|++||||++|+|++++.|....+.+.+.+
T Consensus 75 ~~~~~~~~-~~~~~~~~~l~D~--~~~-~~~~~gv~~~~~~~~~~~~~-~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~ 149 (154)
T PRK09437 75 PEKLSRFA-EKELLNFTLLSDE--DHQ-VAEQFGVWGEKKFMGKTYDG-IHRISFLIDADGKIEHVFDKFKTSNHHDVVL 149 (154)
T ss_pred HHHHHHHH-HHhCCCCeEEECC--Cch-HHHHhCCCcccccccccccC-cceEEEEECCCCEEEEEEcCCCcchhHHHHH
Confidence 78899999 5789999998753 221 22222111000000000000 1267899999999999998866555544433
No 17
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.94 E-value=4.5e-27 Score=158.69 Aligned_cols=138 Identities=19% Similarity=0.315 Sum_probs=108.3
Q ss_pred CcccceEeecCCCCeeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHH
Q 030845 10 KSIYEFTVKDSKGKDVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAH 88 (170)
Q Consensus 10 ~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 88 (170)
.++|+|++++.+|+.+++++++||++||+|| ++|||.|..+++.|.++++++++.++.+++|+.| +.+.++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 5899999999999999999999889999999976 578899
Q ss_pred HHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 89 EFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
+|+ ++++++|+++.|.+ + .+.+.+........+ .....|++||||++|+|++++.|....+.+.+.+
T Consensus 73 ~~~-~~~~~~~~~l~D~~--~----~~~~~~gv~~~~~~~-~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 73 KFA-EKYGLPFPLLSDPD--G----KLAKAYGVWGEKKKK-YMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHH-HHhCCCceEEECCc--c----HHHHHhCCccccccc-cCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 999 58899999987533 2 223332111100000 1112389999999999999999987666666554
No 18
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.94 E-value=3.8e-26 Score=159.45 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=107.8
Q ss_pred CCCCcccceEeecCCCCe--eecCcc-CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCC
Q 030845 7 VPQKSIYEFTVKDSKGKD--VDLSIY-KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~--v~l~~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 83 (170)
..|..+|+|++++.+|+. ++++++ +||+++|+||++|||+|+.++|.++++++ +++.+++|+.+. +
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~-------~ 103 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYKD-------Q 103 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------C
Confidence 456789999999999974 454565 78999999999999999999999988865 369999998753 4
Q ss_pred HHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 84 SQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
.++..+|+ ++++.+|+.+. .|..+.... . +++..+|++|+||++|+|++++.|..+.+++.+.|
T Consensus 104 ~~~~~~~~-~~~~~~f~~v~-~D~~~~~~~----~----------~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l 167 (173)
T TIGR00385 104 SQNALKFL-KELGNPYQAIL-IDPNGKLGL----D----------LGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGF 167 (173)
T ss_pred hHHHHHHH-HHcCCCCceEE-ECCCCchHH----h----------cCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHH
Confidence 56677888 57889998432 133322111 1 46777899999999999999999998999999999
Q ss_pred HHHhhc
Q 030845 164 KNALGD 169 (170)
Q Consensus 164 ~~ll~~ 169 (170)
++++.+
T Consensus 168 ~~~~~~ 173 (173)
T TIGR00385 168 LPAMEK 173 (173)
T ss_pred HHHhhC
Confidence 998753
No 19
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.94 E-value=3.5e-25 Score=153.62 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=104.4
Q ss_pred CCCCCCcccceEeecCCCCeeecCccCCcEEEEEEecCC-CCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCC
Q 030845 5 ESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASK-CGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~-C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 83 (170)
....|..+|+|++.+.+|+.+++++++||++||+||++| ||+|..+++.|++++++++ ++.+++||.| +
T Consensus 17 ~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~ 86 (167)
T PRK00522 17 LPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------L 86 (167)
T ss_pred CCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------C
Confidence 346889999999999999999999999999999999998 9999999999999999983 7999999976 4
Q ss_pred HHHHHHHHHHhcCCC-CceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCC--CCchhHH
Q 030845 84 SQEAHEFACTRYKAE-YPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPT--TSPMAIE 160 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~--~~~~~~~ 160 (170)
....++|+ ++++++ +++++|. .+......|+..... ... .++ ..|++||||++|+|++.+.+. ....++.
T Consensus 87 ~~~~~~f~-~~~~~~~~~~lsD~--~~~~~~~~~gv~~~~-~~~--~g~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~ 159 (167)
T PRK00522 87 PFAQKRFC-GAEGLENVITLSDF--RDHSFGKAYGVAIAE-GPL--KGL-LARAVFVLDENNKVVYSELVPEITNEPDYD 159 (167)
T ss_pred HHHHHHHH-HhCCCCCceEeecC--CccHHHHHhCCeecc-ccc--CCc-eeeEEEEECCCCeEEEEEECCCcCCCCCHH
Confidence 67788898 578886 6888652 121222222111000 000 011 135999999999999998532 2333445
Q ss_pred HHHHH
Q 030845 161 GDIKN 165 (170)
Q Consensus 161 ~~l~~ 165 (170)
+.|+.
T Consensus 160 ~~l~~ 164 (167)
T PRK00522 160 AALAA 164 (167)
T ss_pred HHHHH
Confidence 54443
No 20
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.93 E-value=1.4e-25 Score=152.99 Aligned_cols=131 Identities=15% Similarity=0.263 Sum_probs=103.6
Q ss_pred CCCCcccceEeecCCCCeeecCccCC-cEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCH
Q 030845 7 VPQKSIYEFTVKDSKGKDVDLSIYKG-KVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTS 84 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~v~l~~~~g-k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 84 (170)
..|..+|+|++.+.+|+.+++++++| |+++|.|| ++||+.|+.+++.|+++++++++.++.+++|+.| +.
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~ 73 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP 73 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence 57889999999999999999999999 99999998 8999999999999999999999889999999976 57
Q ss_pred HHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCC
Q 030845 85 QEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTT 154 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~ 154 (170)
+.+++|+ ++++.+||++.|.+.. ..+...+...... .++ ..|++||||++|+|++++.|..
T Consensus 74 ~~~~~~~-~~~~~~~~~~~D~~~~----~~~~~~~g~~~~~---~~~-~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 74 FSLRAWA-EENGLTFPLLSDFWPH----GEVAKAYGVFDED---LGV-AERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHH-HhcCCCceEecCCCch----hHHHHHhCCcccc---CCC-ccceEEEECCCCEEEEEEecCC
Confidence 7889998 5889999998753211 1122222110000 011 2458999999999999998754
No 21
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.93 E-value=1.1e-25 Score=149.62 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=100.2
Q ss_pred cccceEeecCCC--CeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHH
Q 030845 11 SIYEFTVKDSKG--KDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAH 88 (170)
Q Consensus 11 ~~p~f~l~~~~G--~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 88 (170)
.+|+|++++.+| +.+++++++||+++|+||++|||+|..+++.|.++.+++ ++.+++|+.+ ++.+..+
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~~ 71 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENAL 71 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHHH
Confidence 589999999999 889999999999999999999999999999999998875 4999999976 3678889
Q ss_pred HHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchh
Q 030845 89 EFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMA 158 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~ 158 (170)
+|+ ++++.+|+.+. .|..+. +... +++..+|++|+||++|+++.++.|..+.+.
T Consensus 72 ~~~-~~~~~~~~~~~-~D~~~~----~~~~----------~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 72 AWL-ARHGNPYAAVG-FDPDGR----VGID----------LGVYGVPETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred HHH-HhcCCCCceEE-ECCcch----HHHh----------cCCCCCCeEEEECCCceEEEEEeccCChHh
Confidence 998 58888887442 122221 1222 478888999999999999999999777654
No 22
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.93 E-value=1.6e-25 Score=151.66 Aligned_cols=126 Identities=16% Similarity=0.165 Sum_probs=97.9
Q ss_pred CCCcccceEeecCCCCeeecCccCCcEEEEEEecCC-CCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHH
Q 030845 8 PQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASK-CGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQE 86 (170)
Q Consensus 8 ~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~-C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 86 (170)
.|..+|+|++.+.+|+.+++++++||++||+||++| ||+|..+++.|++++++++ |+.+++||.| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 578999999999999999999999999999999987 6999999999999999984 7999999976 5677
Q ss_pred HHHHHHHhcCC-CCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCC
Q 030845 87 AHEFACTRYKA-EYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPT 153 (170)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~ 153 (170)
.++|. ++++. +|++++|.. .......|..+... .++ ..|++||||++|+|++.+.|.
T Consensus 72 ~~~~~-~~~~~~~~~~l~D~~--~~~~~~~~gv~~~~------~~~-~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 72 QKRWC-GAEGVDNVTTLSDFR--DHSFGKAYGVLIKD------LGL-LARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred HHHHH-HhcCCCCceEeecCc--ccHHHHHhCCeecc------CCc-cceEEEEEcCCCeEEEEEECC
Confidence 88888 56775 788887532 11122222111000 011 258999999999999998764
No 23
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.93 E-value=1.7e-25 Score=156.13 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=103.1
Q ss_pred CCCcccceEeecCCC----CeeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCC
Q 030845 8 PQKSIYEFTVKDSKG----KDVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPG 82 (170)
Q Consensus 8 ~~~~~p~f~l~~~~G----~~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 82 (170)
.|..+|+|++.+.+| +.+++++++||++||+|| ++||++|+.+++.|++++++|++.|+.+++||.|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 478899999999887 789999999999999999 8999999999999999999999999999999987
Q ss_pred CHHHHHHHHHHh------cCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCC-
Q 030845 83 TSQEAHEFACTR------YKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTS- 155 (170)
Q Consensus 83 ~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~- 155 (170)
+.+..+.|.... .+.+|+++.|.+ +. +.+.+...... .+ ..+|++||||++|+|++++.+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~--~~----~~~~~gv~~~~---~~-~~~p~~~lID~~G~I~~~~~~~~~~ 142 (173)
T cd03015 73 SHFSHLAWRNTPRKEGGLGKINFPLLADPK--KK----ISRDYGVLDEE---EG-VALRGTFIIDPEGIIRHITVNDLPV 142 (173)
T ss_pred CHHHHHHHHHhhhhhCCccCcceeEEECCc--hh----HHHHhCCcccc---CC-ceeeEEEEECCCCeEEEEEecCCCC
Confidence 344555665321 457899997533 21 22221100000 01 135799999999999999965433
Q ss_pred ---chhHHHHHHHH
Q 030845 156 ---PMAIEGDIKNA 166 (170)
Q Consensus 156 ---~~~~~~~l~~l 166 (170)
.+++.+.|+.+
T Consensus 143 ~~~~~~il~~l~~~ 156 (173)
T cd03015 143 GRSVDETLRVLDAL 156 (173)
T ss_pred CCCHHHHHHHHHHh
Confidence 34455555443
No 24
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.93 E-value=1.1e-25 Score=149.47 Aligned_cols=113 Identities=23% Similarity=0.273 Sum_probs=94.3
Q ss_pred CCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCce
Q 030845 22 GKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPI 101 (170)
Q Consensus 22 G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (170)
|+++++++++||++||+||++||++|..+++.|++++++++++++.+++|+.+.+. ..++.+.+++|+ ++++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~--~~~~~~~~~~~~-~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFA--FERDLANVKSAV-LRYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccc--cccCHHHHHHHH-HHcCCCCCE
Confidence 57899999999999999999999999999999999999999989999999875321 124688999999 588999999
Q ss_pred eEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCC
Q 030845 102 FQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPT 153 (170)
Q Consensus 102 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~ 153 (170)
+.|.+ + .++.. +++.++|++||||++|+|++++.|.
T Consensus 90 ~~D~~--~----~~~~~----------~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 ANDND--Y----ATWRA----------YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred EECCc--h----HHHHH----------hCCCcCCeEEEECCCCcEEEEEecC
Confidence 87532 1 22332 3678889999999999999998874
No 25
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.93 E-value=1.2e-25 Score=158.55 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=97.3
Q ss_pred CCCCcccceEeec-CCCC--eeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCC
Q 030845 7 VPQKSIYEFTVKD-SKGK--DVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPG 82 (170)
Q Consensus 7 ~~~~~~p~f~l~~-~~G~--~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 82 (170)
..|..+|+|++.+ .+|+ .+++++++||++||+|| ++|||+|+.+++.|.+++++++++|+++++||.|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 4688999999998 6887 68888999999999999 9999999999999999999999889999999987
Q ss_pred CHHHHHHHHHH---hcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCC
Q 030845 83 TSQEAHEFACT---RYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSP 152 (170)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g 152 (170)
+.+..+.|... ..+++||+++|.+ ......|+.... . .++ ..|++||||++|+|++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpllsD~~---~~~a~~~gv~~~----~--~g~-~~p~tfiID~~G~I~~~~~~ 137 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPMLGDPT---GVLTRNFGVLIE----E--AGL-ADRGTFVIDPEGVIQAVEIT 137 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEEECCc---cHHHHHhCCccc----C--CCc-eeeEEEEECCCCEEEEEEEe
Confidence 45666666532 1368899997632 122222211100 0 011 35899999999999999754
No 26
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.92 E-value=3.6e-25 Score=149.67 Aligned_cols=134 Identities=19% Similarity=0.263 Sum_probs=103.4
Q ss_pred cccceEeecCCCCeeecCccCCcEEEEEEecCCCCC-chHhHHHHHHHHHHhccCC---eEEEEeeCCCCCCCCCCCHHH
Q 030845 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGF-TDSNYSQLTDLYNKYKHKG---LEILAFPCNQFLKQEPGTSQE 86 (170)
Q Consensus 11 ~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~~---v~vi~vs~d~~~~~~~~~~~~ 86 (170)
.+|+|++.+.+|+++++++++||++||+||++||+. |..+++.|+++++++++.+ +++++|+.|+ ..++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence 379999999999999999999999999999999997 9999999999999998864 9999999874 2356788
Q ss_pred HHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCc----cCcccccCceEEEECCCCcEEEecCC
Q 030845 87 AHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGY----FGSRIKWNFTKFLVDTEGNVIGRYSP 152 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~p~~~lid~~G~i~~~~~g 152 (170)
+++|+ ++++.+|+++.+.+. ....+.+.++...... .++++.+.|.+||||++|+|++++.|
T Consensus 77 ~~~~~-~~~~~~~~~l~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYA-KAFGPGWIGLTGTPE---EIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHH-HHhCCCcEEEECCHH---HHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 99999 578889998865321 1122333322111000 11345567899999999999998753
No 27
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=1.1e-24 Score=155.41 Aligned_cols=143 Identities=18% Similarity=0.262 Sum_probs=104.8
Q ss_pred CCCCCcccceEeecCCCCeeecCccCCcEEEE-EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCH
Q 030845 6 SVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLI-VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTS 84 (170)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 84 (170)
...|..+|+|++.+..| .+++++++||+++| +||++|||.|+.+++.|.+++++++++|+.+++||+| +.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~ 72 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SI 72 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CH
Confidence 35788999999999888 69999999997776 5789999999999999999999999999999999987 34
Q ss_pred HHHHHHHH---HhcC--CCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEec----CCCCC
Q 030845 85 QEAHEFAC---TRYK--AEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRY----SPTTS 155 (170)
Q Consensus 85 ~~~~~~~~---~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~----~g~~~ 155 (170)
....+|++ ++++ ++||+++|.+ +. ....|+.+... . + ...|++||||++|+|++.. .+..+
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~--~~-ia~~ygv~~~~----~--g-~~~p~~fiId~~G~I~~~~~~~~~~gr~ 142 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADID--KE-LAREYNLIDEN----S--G-ATVRGVFIIDPNQIVRWMIYYPAETGRN 142 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCC--hH-HHHHcCCcccc----C--C-cEEeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 44444442 3444 5899998643 21 11222111100 0 1 1358999999999999876 33346
Q ss_pred chhHHHHHHHHh
Q 030845 156 PMAIEGDIKNAL 167 (170)
Q Consensus 156 ~~~~~~~l~~ll 167 (170)
.+++.+.|+.+.
T Consensus 143 ~~ellr~l~~l~ 154 (202)
T PRK13190 143 IDEIIRITKALQ 154 (202)
T ss_pred HHHHHHHHHHhh
Confidence 677777777654
No 28
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.92 E-value=6.2e-24 Score=150.13 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=100.8
Q ss_pred CCCCCCcccceEeecCCCCeeecC--ccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCC
Q 030845 5 ESVPQKSIYEFTVKDSKGKDVDLS--IYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPG 82 (170)
Q Consensus 5 ~~~~~~~~p~f~l~~~~G~~v~l~--~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 82 (170)
....|..+|+|+++|.+|+.++++ +++||+++|+||++|||+|+.++|.++++++++ ++.+++|+.+
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~-------- 113 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG-------- 113 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------
Confidence 356888999999999999999995 569999999999999999999999999988753 5778888743
Q ss_pred CHHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 83 TSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
+.++.++|+ ++++++++.+.. . ..+... +++..+|++|+||++|+|+++.. ....+++++.
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~---~----~~i~~~----------y~v~~~P~~~lID~~G~I~~~g~-~~~~~~le~l 174 (189)
T TIGR02661 114 TPAEHRRFL-KDHELGGERYVV---S----AEIGMA----------FQVGKIPYGVLLDQDGKIRAKGL-TNTREHLESL 174 (189)
T ss_pred CHHHHHHHH-HhcCCCcceeec---h----hHHHHh----------ccCCccceEEEECCCCeEEEccC-CCCHHHHHHH
Confidence 578889999 578888775531 1 111111 47888899999999999998642 1233455555
Q ss_pred HHHH
Q 030845 163 IKNA 166 (170)
Q Consensus 163 l~~l 166 (170)
++++
T Consensus 175 l~~l 178 (189)
T TIGR02661 175 LEAD 178 (189)
T ss_pred HHHH
Confidence 5543
No 29
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=171.11 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=110.3
Q ss_pred CCCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHH
Q 030845 7 VPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQE 86 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 86 (170)
..+..+|+|++.|.+|+.++++ +||++||+|||+||++|+.++|.|++++++++..++.||+|+++... ...+.+.
T Consensus 33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~--~e~~~~~ 108 (521)
T PRK14018 33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFL--HEKKDGD 108 (521)
T ss_pred cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccc--ccccHHH
Confidence 3445899999999999999988 89999999999999999999999999999998778999999975321 1224567
Q ss_pred HHHHHHHhcCC-CCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHH
Q 030845 87 AHEFACTRYKA-EYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKN 165 (170)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 165 (170)
.++|+ +..+. ++|++.|. .+ .+... +++..+|+++|||++|+|+.++.|..+.+++.+.|+.
T Consensus 109 ~~~~~-~~~~y~~~pV~~D~--~~----~lak~----------fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 109 FQKWY-AGLDYPKLPVLTDN--GG----TLAQS----------LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHH-HhCCCcccceeccc--cH----HHHHH----------cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 77777 34444 46776542 11 22322 4788999999999999999999999998888888773
No 30
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.92 E-value=6.4e-25 Score=147.81 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=82.4
Q ss_pred eeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC-------CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcC
Q 030845 24 DVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK-------GLEILAFPCNQFLKQEPGTSQEAHEFACTRYK 96 (170)
Q Consensus 24 ~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-------~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
.+++++++||+++|+|||+|||+|+.++|.|.+++++++++ ++++|+||.|. +.+..++|+ ++.+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-------~~~~~~~f~-~~~~ 88 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFL-KDMP 88 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-------CHHHHHHHH-HHCC
Confidence 46788999999999999999999999999999999988643 69999999874 567788998 5778
Q ss_pred CCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEe
Q 030845 97 AEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGR 149 (170)
Q Consensus 97 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~ 149 (170)
++|+.+...+.. ...+... +++..+|++||||++|+|+.+
T Consensus 89 ~~~~~~p~~~~~---~~~l~~~----------y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 89 KKWLFLPFEDEF---RRELEAQ----------FSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCceeecccchH---HHHHHHH----------cCCCCCCEEEEECCCCcEEee
Confidence 776543211111 1122222 578889999999999999987
No 31
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.92 E-value=4.7e-24 Score=139.10 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=90.7
Q ss_pred cceEeecCCCCeeecCccC-CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHH
Q 030845 13 YEFTVKDSKGKDVDLSIYK-GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFA 91 (170)
Q Consensus 13 p~f~l~~~~G~~v~l~~~~-gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 91 (170)
|+|++.+.+|+.+++++++ ||+++|+||++||++|+.+++.++++++++++ ++.++.++ + ++.+..++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7899999999999999997 99999999999999999999999999988865 58888775 3 2577888898
Q ss_pred HHhcCCC-CceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEec
Q 030845 92 CTRYKAE-YPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRY 150 (170)
Q Consensus 92 ~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~ 150 (170)
+++++. ||.+.+ + .+... +++..+|++||||++|+|+++.
T Consensus 72 -~~~~~~~~p~~~~----~----~~~~~----------~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 -KKHGLEAFPYVLS----A----ELGMA----------YQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred -HHhCCCCCcEEec----H----HHHhh----------cCCCCcCeEEEECCCCeEEecc
Confidence 578884 887742 1 11112 4788889999999999999864
No 32
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.92 E-value=2.6e-24 Score=154.30 Aligned_cols=143 Identities=13% Similarity=0.156 Sum_probs=104.4
Q ss_pred CCCCcccceEeecCCCCeeecCccCCcEE-EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHH
Q 030845 7 VPQKSIYEFTVKDSKGKDVDLSIYKGKVL-LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQ 85 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~v~l~~~~gk~~-ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 85 (170)
..|..+|+|++.+.+|+.+.+++++||++ |++||++|||.|..+++.|.+++++|+++|+.+++||+| +..
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~ 74 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF 74 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 57889999999999999888889999976 567889999999999999999999999999999999987 444
Q ss_pred HHHHH---HHH--hcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCC----CCCc
Q 030845 86 EAHEF---ACT--RYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSP----TTSP 156 (170)
Q Consensus 86 ~~~~~---~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g----~~~~ 156 (170)
..+.| +++ .++++||+++|.+ + .....|+.+.... +....|++||||++|+|+..+.. ..+.
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil~D~~--~-~va~~yg~~~~~~------~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~ 145 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVIADDL--G-KVSNQLGMIHPGK------GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNV 145 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEEECCC--c-hHHHHcCCCccCC------CCceeeEEEEECCCCEEEEEEEcCCCCCCCH
Confidence 44444 422 3478999998643 2 2222332211100 11245899999999999998632 2245
Q ss_pred hhHHHHHHHH
Q 030845 157 MAIEGDIKNA 166 (170)
Q Consensus 157 ~~~~~~l~~l 166 (170)
+++.+.|+.|
T Consensus 146 ~eilr~l~~l 155 (215)
T PRK13599 146 DEILRALKAL 155 (215)
T ss_pred HHHHHHHHHh
Confidence 5666666554
No 33
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.91 E-value=3.7e-24 Score=144.38 Aligned_cols=129 Identities=17% Similarity=0.261 Sum_probs=100.8
Q ss_pred cccceEeecCCCCeeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHH
Q 030845 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHE 89 (170)
Q Consensus 11 ~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~ 89 (170)
.+|+|++.+.+|+++++++++||++||+|| ++||+.|..+++.|.++++++++.++.+++|+.| +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 379999999999999999999999999999 7899999999999999999998789999999976 5678899
Q ss_pred HHHHhc-CCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCC
Q 030845 90 FACTRY-KAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTS 155 (170)
Q Consensus 90 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~ 155 (170)
|+ +++ +.+|+++.|.+ + .+...+........+ +....|++||||++|+|++++.|...
T Consensus 73 ~~-~~~~~~~~~~l~D~~--~----~~~~~~g~~~~~~~~-~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 73 WA-EKEGGLNFPLLSDPD--G----EFAKAYGVLIEKSAG-GGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HH-hcccCCCceEEECCC--h----HHHHHcCCccccccc-cCceeEEEEEECCCCcEEEEEecCCC
Confidence 98 577 88999997532 2 222222111000000 11234789999999999999988655
No 34
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.91 E-value=4.4e-24 Score=150.00 Aligned_cols=142 Identities=13% Similarity=0.196 Sum_probs=104.1
Q ss_pred CCCCcccceEeec-CCC--CeeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCC
Q 030845 7 VPQKSIYEFTVKD-SKG--KDVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPG 82 (170)
Q Consensus 7 ~~~~~~p~f~l~~-~~G--~~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 82 (170)
..|.++|+|+... .+| ..++|++++||++||+|| ++|||.|..+++.|.++++++++.|+++++||.|
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D-------- 74 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC--------
Confidence 4688999999877 344 446778999999999999 9999999999999999999999999999999987
Q ss_pred CHHHHHHHHHHh---cCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCC----CC
Q 030845 83 TSQEAHEFACTR---YKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPT----TS 155 (170)
Q Consensus 83 ~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~----~~ 155 (170)
+....++|++.. .+++||+++|.+.. ....|+.+... .++ ..|++||||++|+|++.+... .+
T Consensus 75 ~~~~~~a~~~~~~~~~~l~fpllsD~~~~---ia~~ygv~~~~------~g~-~~r~tfIID~~G~I~~~~~~~~~~~~~ 144 (187)
T PRK10382 75 THFTHKAWHSSSETIAKIKYAMIGDPTGA---LTRNFDNMRED------EGL-ADRATFVVDPQGIIQAIEVTAEGIGRD 144 (187)
T ss_pred CHHHHHHHHHhhccccCCceeEEEcCchH---HHHHcCCCccc------CCc-eeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 677888888432 47899999874322 22222211100 012 238999999999999987432 24
Q ss_pred chhHHHHHHHH
Q 030845 156 PMAIEGDIKNA 166 (170)
Q Consensus 156 ~~~~~~~l~~l 166 (170)
.+++.+.|+.+
T Consensus 145 ~~eil~~l~al 155 (187)
T PRK10382 145 ASDLLRKIKAA 155 (187)
T ss_pred HHHHHHHHHhh
Confidence 45555555443
No 35
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.91 E-value=5.5e-24 Score=152.74 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=101.6
Q ss_pred CCCCCcccceEeecCCCCeeecCccCCcEEEE-EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCH
Q 030845 6 SVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLI-VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTS 84 (170)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 84 (170)
...|..+|+|++.+.+|+....++++||+++| +||++||+.|+.+++.|.+++++|+++|+++++||+| +.
T Consensus 7 ~~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s~ 78 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------SN 78 (215)
T ss_pred ccCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------CH
Confidence 45789999999999999844335579997776 6789999999999999999999999999999999987 34
Q ss_pred HHHHH---HHHH--hcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCC----CC
Q 030845 85 QEAHE---FACT--RYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPT----TS 155 (170)
Q Consensus 85 ~~~~~---~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~----~~ 155 (170)
...++ ++++ ..+++||+++|.+.. ....|..+.... .....|++||||++|+|++.+.+. .+
T Consensus 79 ~~h~aw~~~~~~~~~~~i~fPllsD~~~~---ia~~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~ 149 (215)
T PRK13191 79 ISHIEWVMWIEKNLKVEVPFPIIADPMGN---VAKRLGMIHAES------STATVRAVFIVDDKGTVRLILYYPMEIGRN 149 (215)
T ss_pred HHHHHHHhhHHHhcCCCCceEEEECCchH---HHHHcCCccccc------CCceeEEEEEECCCCEEEEEEecCCCCCCC
Confidence 44333 3422 246889999874422 222222211100 012357999999999999986432 24
Q ss_pred chhHHHHHHHH
Q 030845 156 PMAIEGDIKNA 166 (170)
Q Consensus 156 ~~~~~~~l~~l 166 (170)
.+++.+.|+.+
T Consensus 150 ~~eilr~l~al 160 (215)
T PRK13191 150 IDEILRAIRAL 160 (215)
T ss_pred HHHHHHHHHHh
Confidence 45666666543
No 36
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.91 E-value=7.3e-24 Score=151.30 Aligned_cols=141 Identities=12% Similarity=0.178 Sum_probs=100.0
Q ss_pred CCcccceEeecCCCCeeecCccCC-cEE-EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHH
Q 030845 9 QKSIYEFTVKDSKGKDVDLSIYKG-KVL-LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQE 86 (170)
Q Consensus 9 ~~~~p~f~l~~~~G~~v~l~~~~g-k~~-ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 86 (170)
|..+|+|++.+.+|. +++++++| |++ |++||++|||.|..+++.|.+++++++++|+++++||+| +...
T Consensus 2 G~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~~ 72 (203)
T cd03016 2 GDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVES 72 (203)
T ss_pred cCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHHH
Confidence 678999999999985 89999988 765 457789999999999999999999999999999999987 3455
Q ss_pred HHHHHHH-----hcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCC----Cch
Q 030845 87 AHEFACT-----RYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTT----SPM 157 (170)
Q Consensus 87 ~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~----~~~ 157 (170)
.++|+.+ +.+++||+++|.+. .+.+.++...... +.+. ..|++||||++|+|++.+.+.. +.+
T Consensus 73 ~~~~~~~i~~~~~~~~~fpil~D~~~------~ia~~yg~~~~~~-~~~~-~~r~~fiID~~G~I~~~~~~~~~~gr~~~ 144 (203)
T cd03016 73 HIKWIEDIEEYTGVEIPFPIIADPDR------EVAKLLGMIDPDA-GSTL-TVRAVFIIDPDKKIRLILYYPATTGRNFD 144 (203)
T ss_pred HHHHHhhHHHhcCCCCceeEEECchH------HHHHHcCCccccC-CCCc-eeeEEEEECCCCeEEEEEecCCCCCCCHH
Confidence 4455421 16889999986432 1222221110000 0011 2468999999999999875533 345
Q ss_pred hHHHHHHHH
Q 030845 158 AIEGDIKNA 166 (170)
Q Consensus 158 ~~~~~l~~l 166 (170)
++.+.|+++
T Consensus 145 ell~~l~~l 153 (203)
T cd03016 145 EILRVVDAL 153 (203)
T ss_pred HHHHHHHHH
Confidence 566666544
No 37
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=1.3e-23 Score=179.37 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=118.6
Q ss_pred CCCCcccceEeec--CCCCeeec-CccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCC
Q 030845 7 VPQKSIYEFTVKD--SKGKDVDL-SIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 7 ~~~~~~p~f~l~~--~~G~~v~l-~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 83 (170)
..+..+|+|+..+ .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|+++++.+++|+.+.+ + ...+
T Consensus 392 ~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~-D-~~~~ 469 (1057)
T PLN02919 392 KTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKF-D-NEKD 469 (1057)
T ss_pred ccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccc-c-cccc
Confidence 4688999999876 78999998 5899999999999999999999999999999999988999999986521 1 1224
Q ss_pred HHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 84 SQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
.+.+++++ .+++++||++.|.+ + .++.. +++..+|+++|||++|++++++.|....+++.+.|
T Consensus 470 ~~~~~~~~-~~~~i~~pvv~D~~--~----~~~~~----------~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l 532 (1057)
T PLN02919 470 LEAIRNAV-LRYNISHPVVNDGD--M----YLWRE----------LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLV 532 (1057)
T ss_pred HHHHHHHH-HHhCCCccEEECCc--h----HHHHh----------cCCCccceEEEECCCCeEEEEEecccCHHHHHHHH
Confidence 67888998 58999999886422 1 23332 47888999999999999999999988888888888
Q ss_pred HHHhh
Q 030845 164 KNALG 168 (170)
Q Consensus 164 ~~ll~ 168 (170)
++++.
T Consensus 533 ~~~l~ 537 (1057)
T PLN02919 533 EAALQ 537 (1057)
T ss_pred HHHHH
Confidence 87764
No 38
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.90 E-value=8.3e-24 Score=143.97 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=95.7
Q ss_pred cccceEeecCCCCeeecCccC-CcEEEEEE-ecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHH
Q 030845 11 SIYEFTVKDSKGKDVDLSIYK-GKVLLIVN-VASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAH 88 (170)
Q Consensus 11 ~~p~f~l~~~~G~~v~l~~~~-gk~~ll~f-~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 88 (170)
.+|+|++.+.+|+.++++++. +|+++|.| |++|||+|+.+++.|+++++++++.|+.+++|+.| +.+...
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 479999999999999999874 46555555 69999999999999999999999889999999976 455666
Q ss_pred HHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCC-------------------ccCcccccCceEEEECCCCcEEEe
Q 030845 89 EFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTG-------------------YFGSRIKWNFTKFLVDTEGNVIGR 149 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~v~~~p~~~lid~~G~i~~~ 149 (170)
.|+ ++++++||++.|.+. .++..+...... ..+......|++||||++|+|++.
T Consensus 73 ~~~-~~~~~~~p~~~D~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~ 145 (149)
T cd02970 73 AFD-KGKFLPFPVYADPDR------KLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFA 145 (149)
T ss_pred HHH-HhcCCCCeEEECCch------hHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEE
Confidence 787 588999999986432 123332211000 001123357999999999999998
Q ss_pred cCC
Q 030845 150 YSP 152 (170)
Q Consensus 150 ~~g 152 (170)
+.|
T Consensus 146 ~~~ 148 (149)
T cd02970 146 HVD 148 (149)
T ss_pred ecC
Confidence 865
No 39
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.90 E-value=2e-23 Score=137.92 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=101.9
Q ss_pred cceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 030845 13 YEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFAC 92 (170)
Q Consensus 13 p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 92 (170)
|+|++++.+|+.+++++++||+++|+||++||++|+.+++.|++++++ +.+++|++|. ++.+.+++|+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~- 68 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFM- 68 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHH-
Confidence 789999999999999999999999999999999999999999999876 6678888763 3678899999
Q ss_pred HhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 93 TRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 93 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
++++++|+++.|.+ + .+... +++.+.|+++|+|++| +++++.|..+++++.+.
T Consensus 69 ~~~~~~~~~~~d~~--~----~~~~~----------~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 69 QKKGYGFPVINDPD--G----VISAR----------WGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred HHcCCCccEEECCC--c----HHHHh----------CCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 58899999886422 1 22322 4788899999999999 99999998888887654
No 40
>PRK15000 peroxidase; Provisional
Probab=99.90 E-value=2.8e-23 Score=147.67 Aligned_cols=141 Identities=12% Similarity=0.184 Sum_probs=99.1
Q ss_pred CCCCcccceEeecCC--CCe---eecCcc-CCcEEEEEEec-CCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCC
Q 030845 7 VPQKSIYEFTVKDSK--GKD---VDLSIY-KGKVLLIVNVA-SKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQ 79 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~--G~~---v~l~~~-~gk~~ll~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~ 79 (170)
..|..+|+|++.+.. |+. ++++++ +||++||+||+ +||+.|+.+++.|++++++|+++|+++++||+|
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----- 77 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----- 77 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 368899999999864 453 455665 79999999997 499999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHH---HhcC---CCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCC
Q 030845 80 EPGTSQEAHEFAC---TRYK---AEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPT 153 (170)
Q Consensus 80 ~~~~~~~~~~~~~---~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~ 153 (170)
+....+.|.. ++.+ ++||+++|.+. .....|+.+... .++ ..|++||||++|+|+..+.+.
T Consensus 78 ---~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~---~ia~~ygv~~~~------~g~-~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 78 ---SEFVHNAWRNTPVDKGGIGPVKYAMVADVKR---EIQKAYGIEHPD------EGV-ALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred ---CHHHHHHHHhhHHHhCCccccCceEEECCCc---HHHHHcCCccCC------CCc-EEeEEEEECCCCEEEEEEecC
Confidence 4554455532 2333 58999986432 122222211100 011 468999999999999988664
Q ss_pred CCc----hhHHHHHHH
Q 030845 154 TSP----MAIEGDIKN 165 (170)
Q Consensus 154 ~~~----~~~~~~l~~ 165 (170)
.+. +++.+.|+.
T Consensus 145 ~~~gr~~~eilr~l~a 160 (200)
T PRK15000 145 LPLGRNIDEMLRMVDA 160 (200)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 433 445555543
No 41
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.90 E-value=2.2e-23 Score=144.98 Aligned_cols=139 Identities=15% Similarity=0.122 Sum_probs=103.0
Q ss_pred CCCCCCCcccceEeecC----------CCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEE-----
Q 030845 4 SESVPQKSIYEFTVKDS----------KGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEI----- 68 (170)
Q Consensus 4 ~~~~~~~~~p~f~l~~~----------~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~v----- 68 (170)
.+...+..+|..++.+- +.++++.++++||+.||+|||+||++|..+.|.|.++ +++|+.+
T Consensus 21 ~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 21 HNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 34677888888877664 3556777889999999999999999999999999999 4456888
Q ss_pred -EEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCc---eeEEeecCCCCCchHHHHHhhhcCCccCcccccCceE-EEECCC
Q 030845 69 -LAFPCNQFLKQEPGTSQEAHEFACTRYKAEYP---IFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTK-FLVDTE 143 (170)
Q Consensus 69 -i~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~-~lid~~ 143 (170)
++|+.|. .......-+++|+ ++.+..|| ++.| .++... .. +++...|++ ||||++
T Consensus 97 t~~IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vllD--~~g~v~-~~-------------~gv~~~P~T~fVIDk~ 156 (184)
T TIGR01626 97 TTIINADD---AIVGTGMFVKSSA-KKGKKENPWSQVVLD--DKGAVK-NA-------------WQLNSEDSAIIVLDKT 156 (184)
T ss_pred eEEEECcc---chhhHHHHHHHHH-HHhcccCCcceEEEC--CcchHH-Hh-------------cCCCCCCceEEEECCC
Confidence 9999873 1111234456777 57788888 6654 233211 11 478888888 899999
Q ss_pred CcEEEecCCCCCchhHHHHHHHHh
Q 030845 144 GNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 144 G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
|+|++++.|..+.+++.+ +..++
T Consensus 157 GkVv~~~~G~l~~ee~e~-~~~li 179 (184)
T TIGR01626 157 GKVKFVKEGALSDSDIQT-VISLV 179 (184)
T ss_pred CcEEEEEeCCCCHHHHHH-HHHHH
Confidence 999999999988887766 44444
No 42
>PRK13189 peroxiredoxin; Provisional
Probab=99.90 E-value=5.9e-23 Score=148.16 Aligned_cols=143 Identities=17% Similarity=0.267 Sum_probs=101.3
Q ss_pred CCCCCcccceEeecCCCCeeecCc-cCCcEEEE-EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCC
Q 030845 6 SVPQKSIYEFTVKDSKGKDVDLSI-YKGKVLLI-VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~v~l~~-~~gk~~ll-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 83 (170)
...|..+|+|++.+.+|+ +++++ ++||+++| +||++|||.|+.+++.|.+++++|+++|+++++||+| +
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~ 79 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------Q 79 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------C
Confidence 457999999999999996 67776 49986655 6679999999999999999999999999999999987 3
Q ss_pred HHHHHHHHHH---h--cCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCC----
Q 030845 84 SQEAHEFACT---R--YKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTT---- 154 (170)
Q Consensus 84 ~~~~~~~~~~---~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~---- 154 (170)
.....+|++. + .+++||+++|.+ + .....|..+.... .-...|++||||++|+|+..+.+..
T Consensus 80 ~~~h~aw~~~~~~~~g~~i~fPllsD~~--~-~ia~~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr 150 (222)
T PRK13189 80 VFSHIKWVEWIKEKLGVEIEFPIIADDR--G-EIAKKLGMISPGK------GTNTVRAVFIIDPKGIIRAILYYPQEVGR 150 (222)
T ss_pred HHHHHHHHHhHHHhcCcCcceeEEEcCc--c-HHHHHhCCCcccc------CCCceeEEEEECCCCeEEEEEecCCCCCC
Confidence 4454455531 1 357899998643 2 1122222211000 0014589999999999998865322
Q ss_pred CchhHHHHHHHH
Q 030845 155 SPMAIEGDIKNA 166 (170)
Q Consensus 155 ~~~~~~~~l~~l 166 (170)
+.+++.+.|+.+
T Consensus 151 ~~~eilr~l~al 162 (222)
T PRK13189 151 NMDEILRLVKAL 162 (222)
T ss_pred CHHHHHHHHHHh
Confidence 345666666554
No 43
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.90 E-value=5.4e-23 Score=150.47 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=102.4
Q ss_pred CCCCcccceEeec-CCCC--eeecCcc-CCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCC
Q 030845 7 VPQKSIYEFTVKD-SKGK--DVDLSIY-KGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEP 81 (170)
Q Consensus 7 ~~~~~~p~f~l~~-~~G~--~v~l~~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~ 81 (170)
..|..+|+|++.+ .+|+ .++++++ +||++||+|| ++|||.|+.+++.|++++++|+++|+++++||+|
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D------- 141 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD------- 141 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-------
Confidence 6889999999987 5664 5899998 8888888887 8999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHH------hcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCC---
Q 030845 82 GTSQEAHEFACT------RYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSP--- 152 (170)
Q Consensus 82 ~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g--- 152 (170)
+....+.|... ..+++||+++|.+. .....|..+.. .+ ...|++||||++|+|++.+..
T Consensus 142 -s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~---~iakayGv~~~-------~g-~a~R~tFIID~dG~I~~~~~~~~~ 209 (261)
T PTZ00137 142 -SPFSHKAWKELDVRQGGVSPLKFPLFSDISR---EVSKSFGLLRD-------EG-FSHRASVLVDKAGVVKHVAVYDLG 209 (261)
T ss_pred -CHHHHHHHHhhhhhhccccCcceEEEEcCCh---HHHHHcCCCCc-------CC-ceecEEEEECCCCEEEEEEEeCCC
Confidence 45555566521 15788999987431 12222211100 01 136899999999999998732
Q ss_pred -CCCchhHHHHHHHH
Q 030845 153 -TTSPMAIEGDIKNA 166 (170)
Q Consensus 153 -~~~~~~~~~~l~~l 166 (170)
..+.+++.+.|+.+
T Consensus 210 ~gr~v~eiLr~l~al 224 (261)
T PTZ00137 210 LGRSVDETLRLFDAV 224 (261)
T ss_pred CCCCHHHHHHHHHHh
Confidence 22445555555543
No 44
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.89 E-value=5.3e-23 Score=146.53 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=99.0
Q ss_pred CCCCCCCCCCcccceEeec----CCCCeeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCC
Q 030845 1 MGASESVPQKSIYEFTVKD----SKGKDVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQ 75 (170)
Q Consensus 1 ~~~~~~~~~~~~p~f~l~~----~~G~~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 75 (170)
|.......|..+|+|++.+ .+|+.+++++++||++||+|| ++||+.|+.+++.|.+++++|+++|+++++||.|.
T Consensus 1 ~~~~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 1 MSCGDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCccccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 3344457899999999765 567899999999999999999 57999999999999999999999999999999873
Q ss_pred CCCCCCCCHHHHHHHHH-Hh-----cCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEe
Q 030845 76 FLKQEPGTSQEAHEFAC-TR-----YKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGR 149 (170)
Q Consensus 76 ~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~ 149 (170)
......|.. .+ .+++||+++|.+.. ....|..+... .++ ..|++||||++|+|+..
T Consensus 81 --------~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~---ia~~ygv~~~~------~g~-~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 81 --------EYAHLQWTLQERKKGGLGTMAIPMLADKTKS---IARSYGVLEEE------QGV-AYRGLFIIDPKGMLRQI 142 (199)
T ss_pred --------HHHHHHHHhChHhhCCccccccceEECcHhH---HHHHcCCcccC------CCc-eEEEEEEECCCCEEEEE
Confidence 333333321 11 14789999864322 22222211100 011 24799999999999998
Q ss_pred cCCCCCc
Q 030845 150 YSPTTSP 156 (170)
Q Consensus 150 ~~g~~~~ 156 (170)
+.+..+.
T Consensus 143 ~~~~~~~ 149 (199)
T PTZ00253 143 TVNDMPV 149 (199)
T ss_pred EecCCCC
Confidence 7654333
No 45
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.89 E-value=2.3e-22 Score=130.36 Aligned_cols=116 Identities=28% Similarity=0.441 Sum_probs=98.7
Q ss_pred ceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH
Q 030845 14 EFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACT 93 (170)
Q Consensus 14 ~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~ 93 (170)
+|++.+.+|+.+++++++||+++|.||++||+.|+..++.|.++.+++++.++.+++|++|. ++.+.+++++ +
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~-~ 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFL-K 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHH-H
Confidence 58899999999999999999999999999999999999999999999987789999999884 1489999999 5
Q ss_pred hcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCC
Q 030845 94 RYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSP 152 (170)
Q Consensus 94 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g 152 (170)
+++.+|+++.+.. ..+.+. +++..+|+++|+|++|++++++.|
T Consensus 74 ~~~~~~~~~~~~~------~~~~~~----------~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 74 KYGITFPVLLDPD------GELAKA----------YGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred HcCCCcceEEcCc------chHHHh----------cCcCccceEEEECCCCcEEEEecC
Confidence 7889999886431 122222 467788999999999999998765
No 46
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.89 E-value=5.2e-22 Score=141.62 Aligned_cols=153 Identities=20% Similarity=0.302 Sum_probs=119.7
Q ss_pred CCccc-ceEeecCCCCeeecCccCCcEEEEEEecCCCC-CchHhHHHHHHHHHHhc---cCCeEEEEeeCCCCCCCCCCC
Q 030845 9 QKSIY-EFTVKDSKGKDVDLSIYKGKVLLIVNVASKCG-FTDSNYSQLTDLYNKYK---HKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 9 ~~~~p-~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~-~C~~~~~~l~~~~~~~~---~~~v~vi~vs~d~~~~~~~~~ 83 (170)
+...+ +|+|+|++|+++++.+++||++||+|.+|.|| .|+.++..|.++++++. ..+++++.|++|+ ++|+
T Consensus 43 ~~~~~g~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP----erDt 118 (207)
T COG1999 43 AVYIGGDFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP----ERDT 118 (207)
T ss_pred ccccCCceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC----CCCC
Confidence 33444 79999999999999999999999999999999 59999999999999998 3469999999987 7889
Q ss_pred HHHHHHHHHH-hcCCCCceeEEeecCCCCCchHHHHHhhh-----cCCccCcccccCceEEEECCCCcEEEecCCCCCch
Q 030845 84 SQEAHEFACT-RYKAEYPIFQKVRVNGPNAEPLYKFLKAS-----KTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPM 157 (170)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~ 157 (170)
++.+++|+ + .+...|..++. .......++..+.-. ..+...|.+.|...+|+||++|+++..+.+..+++
T Consensus 119 p~~lk~Y~-~~~~~~~~~~ltg---~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~ 194 (207)
T COG1999 119 PEVLKKYA-ELNFDPRWIGLTG---TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPE 194 (207)
T ss_pred HHHHHHHh-cccCCCCeeeeeC---CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChH
Confidence 99999999 5 44444554432 122333333333221 11111368999999999999999999998877899
Q ss_pred hHHHHHHHHhhc
Q 030845 158 AIEGDIKNALGD 169 (170)
Q Consensus 158 ~~~~~l~~ll~~ 169 (170)
++.+.|++++++
T Consensus 195 ~i~~~l~~l~~~ 206 (207)
T COG1999 195 EIAADLKKLLKE 206 (207)
T ss_pred HHHHHHHHHhhc
Confidence 999999998864
No 47
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.89 E-value=5.3e-23 Score=137.60 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=84.0
Q ss_pred CCCC-eeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC--CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcC
Q 030845 20 SKGK-DVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK--GLEILAFPCNQFLKQEPGTSQEAHEFACTRYK 96 (170)
Q Consensus 20 ~~G~-~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
+||+ ++++++++||++||+||++||++|+.+++.|+++++++++. ++++++|+.|. +.+.++.|++ +++
T Consensus 4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~~-~~~ 75 (132)
T cd02964 4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYFS-EMP 75 (132)
T ss_pred ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHHh-cCC
Confidence 3444 89999999999999999999999999999999999999875 79999999884 5678889984 665
Q ss_pred CCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEec
Q 030845 97 AEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRY 150 (170)
Q Consensus 97 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~ 150 (170)
.|..+...+.. ....+-+. +++..+|+++|||++|+|+.+.
T Consensus 76 -~~~~~~~~d~~--~~~~~~~~----------~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 76 -PWLAVPFEDEE--LRELLEKQ----------FKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred -CeEeeccCcHH--HHHHHHHH----------cCCCCCCEEEEECCCCCEEchh
Confidence 44433211100 00111111 4788899999999999999874
No 48
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.89 E-value=1.9e-22 Score=139.55 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=94.0
Q ss_pred CCCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHH
Q 030845 7 VPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQE 86 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 86 (170)
.+..+.++|++. +|+.+++++++ ||+||++|||+|+.++|.|+++++++ ++.+++|++|. .
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~--- 110 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------Q--- 110 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------C---
Confidence 344567888874 99999999987 77899999999999999999999997 59999999873 1
Q ss_pred HHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcc--cccCceEEEECCCCcEEE-ecCCCCCchhHHHHH
Q 030845 87 AHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSR--IKWNFTKFLVDTEGNVIG-RYSPTTSPMAIEGDI 163 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~p~~~lid~~G~i~~-~~~g~~~~~~~~~~l 163 (170)
....||++.|.. +. .+... ++ +..+|++||||++|+++. .+.|..+.+++.+.|
T Consensus 111 --------~~~~fPv~~dd~--~~---~~~~~----------~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I 167 (181)
T PRK13728 111 --------GDTAFPEALPAP--PD---VMQTF----------FPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARM 167 (181)
T ss_pred --------CCCCCceEecCc--hh---HHHHH----------hCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHH
Confidence 125788885311 11 11222 23 257899999999999974 789999999999999
Q ss_pred HHHhh
Q 030845 164 KNALG 168 (170)
Q Consensus 164 ~~ll~ 168 (170)
+++++
T Consensus 168 ~~ll~ 172 (181)
T PRK13728 168 DTVLQ 172 (181)
T ss_pred HHHHh
Confidence 98875
No 49
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.88 E-value=1.4e-22 Score=141.36 Aligned_cols=137 Identities=19% Similarity=0.303 Sum_probs=105.2
Q ss_pred CCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCC-chHhHHHHHHHHHHhccC--CeEEEEeeCCCCCCCCCCCH
Q 030845 8 PQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGF-TDSNYSQLTDLYNKYKHK--GLEILAFPCNQFLKQEPGTS 84 (170)
Q Consensus 8 ~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~ 84 (170)
.....|+|+|.|++|+++++++++||++||+|.++.||. |+..+..|.++++++++. .+++++||+|| ++|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP----~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP----ERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST----TTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC----CCCCH
Confidence 556789999999999999999999999999999999995 999999999999999864 69999999987 67899
Q ss_pred HHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhh---cC---CccCcccccCceEEEECCCCcEEEecCC
Q 030845 85 QEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKAS---KT---GYFGSRIKWNFTKFLVDTEGNVIGRYSP 152 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~---~~~~~~v~~~p~~~lid~~G~i~~~~~g 152 (170)
+.+++|+ +.++..+..|.... .....+.+.+... .. ....+.+.|...+|||||+|+++..+.+
T Consensus 104 ~~L~~Y~-~~~~~~~~~ltg~~---~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYA-KKFGPDFIGLTGSR---EEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHH-HCHTTTCEEEEEEH---HHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHH-HhcCCCcceeEeCH---HHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 9999999 58888887774322 1223333332211 11 1122678899999999999999998854
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.87 E-value=2.4e-22 Score=134.18 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=84.5
Q ss_pred eecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC--CeEEEEeeCCCCCCCCCCCHHHHHHHHHHh
Q 030845 17 VKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK--GLEILAFPCNQFLKQEPGTSQEAHEFACTR 94 (170)
Q Consensus 17 l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~ 94 (170)
|.+.+|+.+++++++||++||+||++||++|+.+++.|+++++++++. ++++++|+.|. +.+..+++++ +
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~~-~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYFS-K 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHHH-c
Confidence 568999999999999999999999999999999999999999999864 79999999884 4567777773 3
Q ss_pred cCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEec
Q 030845 95 YKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRY 150 (170)
Q Consensus 95 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~ 150 (170)
++ +..+...+ ......+.+. +++..+|+++|||++|+++.+.
T Consensus 75 ~~--~~~~~~~~--~~~~~~~~~~----------~~v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 75 MP--WLAVPFSD--RERRSRLNRT----------FKIEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CC--eeEcccCC--HHHHHHHHHH----------cCCCCCCEEEEECCCCCEEccc
Confidence 32 21110000 0000112222 4788899999999999999874
No 51
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.85 E-value=3.8e-21 Score=131.79 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=98.5
Q ss_pred CCCcccceEeecCC---CCeeecCc-cCCcEEEEEEe-cCCCCCchHh-HHHHHHHHHHhccCCe-EEEEeeCCCCCCCC
Q 030845 8 PQKSIYEFTVKDSK---GKDVDLSI-YKGKVLLIVNV-ASKCGFTDSN-YSQLTDLYNKYKHKGL-EILAFPCNQFLKQE 80 (170)
Q Consensus 8 ~~~~~p~f~l~~~~---G~~v~l~~-~~gk~~ll~f~-~~~C~~C~~~-~~~l~~~~~~~~~~~v-~vi~vs~d~~~~~~ 80 (170)
.|..+|+|++.+.+ |+.++|++ ++||++||+|+ +.|||.|..+ ++.|++.++++++.|+ .|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 47889999999985 99999999 58887777776 8899999999 9999999999999999 69999987
Q ss_pred CCCHHHHHHHHHHhcCC--CCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCC
Q 030845 81 PGTSQEAHEFACTRYKA--EYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTT 154 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~ 154 (170)
+....++|+ ++++. +||+++|.+.+.... |..+..... .+.+......+|||| +|+|++.+....
T Consensus 75 --~~~~~~~~~-~~~~~~~~f~lLsD~~~~~~~~---ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~ 141 (155)
T cd03013 75 --DPFVMKAWG-KALGAKDKIRFLADGNGEFTKA---LGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEED 141 (155)
T ss_pred --CHHHHHHHH-HhhCCCCcEEEEECCCHHHHHH---cCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecC
Confidence 688888998 57786 899998754322222 222111110 111111235789999 699999875433
No 52
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.83 E-value=5.9e-21 Score=120.57 Aligned_cols=94 Identities=24% Similarity=0.306 Sum_probs=72.3
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhc-cCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYK-HKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
||+++|+||++||++|..+++.|++++++++ +.++++|+||+|. +.++.++++ ++++.++..+...+ .
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-------~~~~~~~~~-~~~~~~~~~~~~~~---~ 69 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-------DEEEWKKFL-KKNNFPWYNVPFDD---D 69 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-------SHHHHHHHH-HTCTTSSEEEETTT---H
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-------CHHHHHHHH-HhcCCCceEEeeCc---c
Confidence 7999999999999999999999999999999 5579999999984 678889998 46666666553211 1
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcE
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNV 146 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i 146 (170)
....+... +++..+|+++|+|++|+|
T Consensus 70 ~~~~l~~~----------~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 70 NNSELLKK----------YGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHHHH----------TT-TSSSEEEEEETTSBE
T ss_pred hHHHHHHH----------CCCCcCCEEEEECCCCCC
Confidence 12223333 589999999999999986
No 53
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.83 E-value=1.1e-19 Score=115.92 Aligned_cols=108 Identities=64% Similarity=1.146 Sum_probs=99.6
Q ss_pred ccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHH
Q 030845 12 IYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFA 91 (170)
Q Consensus 12 ~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 91 (170)
+.+|++.|.+|+.++|++++||++||.=.|+.|+.-. +...|++++++|+++|+.|+++.++.++.+|+.+.++++.++
T Consensus 1 iYdf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 1 IYDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GGGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred CcceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 3589999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceeEEeecCCCCCchHHHHHh
Q 030845 92 CTRYKAEYPIFQKVRVNGPNAEPLYKFLK 120 (170)
Q Consensus 92 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 120 (170)
..+++++||+....+..|..+.++|++++
T Consensus 80 ~~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 80 KEKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp CHCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred HhccCCcccceEEEEecCCCCcHHHHHhC
Confidence 76789999999999999999999998864
No 54
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.9e-20 Score=126.98 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=106.9
Q ss_pred CCCCCcccceEeecC-CCC---eeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCC
Q 030845 6 SVPQKSIYEFTVKDS-KGK---DVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQE 80 (170)
Q Consensus 6 ~~~~~~~p~f~l~~~-~G~---~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~ 80 (170)
...+.++|+|+.... .|. +++++++.||+++|+|| +.+.+.|+.++..+++.+++|+++|+++|+||+|
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------ 76 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------ 76 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC------
Confidence 356889999999998 774 89999998899999999 8899999999999999999999999999999998
Q ss_pred CCCHHHHHHHHH---HhcC---CCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCC--
Q 030845 81 PGTSQEAHEFAC---TRYK---AEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSP-- 152 (170)
Q Consensus 81 ~~~~~~~~~~~~---~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g-- 152 (170)
+...-.+|.. +..+ ++||+++|...+... .|..+.... ++ ....+|||||+|.|+.....
T Consensus 77 --s~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~---~ygvl~~~~------g~-a~R~~FIIDp~g~ir~~~v~~~ 144 (194)
T COG0450 77 --SVFSHKAWKATIREAGGIGKIKFPMIADPKGEIAR---AYGVLHPEE------GL-ALRGTFIIDPDGVIRHILVNPL 144 (194)
T ss_pred --cHHHHHHHHhcHHhcCCccceecceEEcCchhHHH---HcCCcccCC------Cc-ceeEEEEECCCCeEEEEEEecC
Confidence 4555555553 2455 689999875533322 333333222 11 22478999999999988632
Q ss_pred --CCCchhHHHHHHHH
Q 030845 153 --TTSPMAIEGDIKNA 166 (170)
Q Consensus 153 --~~~~~~~~~~l~~l 166 (170)
..+.+++.+.|+.+
T Consensus 145 ~iGRn~dEilR~idAl 160 (194)
T COG0450 145 TIGRNVDEILRVIDAL 160 (194)
T ss_pred CCCcCHHHHHHHHHHH
Confidence 22456666666654
No 55
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.80 E-value=1.5e-19 Score=123.06 Aligned_cols=109 Identities=15% Similarity=0.220 Sum_probs=75.3
Q ss_pred CCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCce
Q 030845 22 GKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPI 101 (170)
Q Consensus 22 G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (170)
|+.+++++ +.||+||++|||+|+.++|.|+++++++ ++.+++|++|. .. . . .||.
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~------~-~----~fp~ 98 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG------L-T----GFPD 98 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc------c-c----cccc
Confidence 56565554 5599999999999999999999999987 48899998873 11 0 1 2443
Q ss_pred eEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcE-EEecCCCCCchhHHHHHHHHh
Q 030845 102 FQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNV-IGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 102 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~ll 167 (170)
..+.+ .......|.. +++..+|++||||++|.+ +.++.|..+.+++.+.|+++|
T Consensus 99 ~~~~~--~~~~~~~~~~----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 99 PLPAT--PEVMQTFFPN----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred ccCCc--hHHHHHHhcc----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 32111 1100111100 157788999999999885 557899888888888888764
No 56
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.78 E-value=8.6e-19 Score=124.94 Aligned_cols=151 Identities=15% Similarity=0.215 Sum_probs=111.3
Q ss_pred cceEeecCCCCeeecCccCCcEEEEEEecCCCCC-chHhHHHHHHHHHHhccC-C--eEEEEeeCCCCCCCCCCCHHHHH
Q 030845 13 YEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGF-TDSNYSQLTDLYNKYKHK-G--LEILAFPCNQFLKQEPGTSQEAH 88 (170)
Q Consensus 13 p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~-~--v~vi~vs~d~~~~~~~~~~~~~~ 88 (170)
-.|+|.|.+|+.++-.++.||++||+|.+|.||. |+.+|..|.+..+++.+. + +.-++|++|+ ++|+++.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP----eRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP----ERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc----ccCCHHHHH
Confidence 6899999999999999999999999999999995 999999999999998765 3 3468888876 889999999
Q ss_pred HHHHHhcCCCCceeEEeecCCCCCchHHHHHhhh-cCC-ccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 89 EFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKAS-KTG-YFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
+|+ .+++...-=++.......+..+.|+.+-.. ... .-.|=|.|+-.+|||||+|+++..+--..+++++.+.|.+-
T Consensus 196 eY~-~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 196 EYV-SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HHH-HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence 999 577664432221111112223334333222 111 11256777788999999999998765566788888888765
Q ss_pred hh
Q 030845 167 LG 168 (170)
Q Consensus 167 l~ 168 (170)
++
T Consensus 275 v~ 276 (280)
T KOG2792|consen 275 VA 276 (280)
T ss_pred HH
Confidence 54
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.78 E-value=8.2e-19 Score=118.50 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=84.9
Q ss_pred EeecCCCCeeecCc--cCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH
Q 030845 16 TVKDSKGKDVDLSI--YKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACT 93 (170)
Q Consensus 16 ~l~~~~G~~v~l~~--~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~ 93 (170)
++.++.++...+.+ ..||++||+||++||++|+.+++.|.++.+++++. +.++.|++|. . .....+ .
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~--------~-~~~~~~-~ 70 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN--------P-KWLPEI-D 70 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC--------c-ccHHHH-H
Confidence 34555556655554 37899999999999999999999999999999764 8888887762 1 111222 1
Q ss_pred hcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhhc
Q 030845 94 RYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALGD 169 (170)
Q Consensus 94 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~~ 169 (170)
+ ++|..+|++++++++|+++.++.|..+.+++.+.|+++++.
T Consensus 71 ~----------------------------------~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 71 R----------------------------------YRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred H----------------------------------cCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 1 36777899999999999999999988888899999988753
No 58
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.4e-17 Score=108.62 Aligned_cols=143 Identities=20% Similarity=0.296 Sum_probs=106.6
Q ss_pred CCCCCcccceEeecCCCCeeecCccCC-cEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCC
Q 030845 6 SVPQKSIYEFTVKDSKGKDVDLSIYKG-KVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~v~l~~~~g-k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 83 (170)
...|+.+|||+|.|.||++++|.++.| |+++++|| +...|.|.++...+.+-|+++++.+.+|+++|-| +
T Consensus 63 v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D--------~ 134 (211)
T KOG0855|consen 63 VNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD--------D 134 (211)
T ss_pred eecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------c
Confidence 357899999999999999999999977 58888887 7799999999999999999999999999999976 6
Q ss_pred HHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchh-HHHH
Q 030845 84 SQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMA-IEGD 162 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~-~~~~ 162 (170)
....+.|. .+++++|.+++|. ++ ...+.|...+ ..+| +.. ....||+++.|.....+....+|+. +.+.
T Consensus 135 s~sqKaF~-sKqnlPYhLLSDp--k~-e~ik~lGa~k----~p~g-g~~-~Rsh~if~kg~~k~~ik~~~isPevsvd~a 204 (211)
T KOG0855|consen 135 SASQKAFA-SKQNLPYHLLSDP--KN-EVIKDLGAPK----DPFG-GLP-GRSHYIFDKGGVKQLIKNNQISPEVSVDEA 204 (211)
T ss_pred hHHHHHhh-hhccCCeeeecCc--ch-hHHHHhCCCC----CCCC-Ccc-cceEEEEecCCeEEEEEecccCccccHHHH
Confidence 78888898 6899999999863 22 2222232211 1111 222 1367999998776666555566663 4454
Q ss_pred HHHH
Q 030845 163 IKNA 166 (170)
Q Consensus 163 l~~l 166 (170)
+..+
T Consensus 205 ~k~~ 208 (211)
T KOG0855|consen 205 LKFL 208 (211)
T ss_pred HHHH
Confidence 4443
No 59
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.71 E-value=1.4e-16 Score=102.01 Aligned_cols=89 Identities=16% Similarity=0.223 Sum_probs=68.0
Q ss_pred ccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecC
Q 030845 29 IYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVN 108 (170)
Q Consensus 29 ~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 108 (170)
+.+||++||.||++||++|+.+.|.|.++.+++ .++.++.|+.|. ......++ .+
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~--------~~~~~~l~-~~-------------- 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE--------NDSTMELC-RR-------------- 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC--------ChHHHHHH-HH--------------
Confidence 346899999999999999999999999999999 348899998762 22334444 23
Q ss_pred CCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHH
Q 030845 109 GPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIK 164 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 164 (170)
++|..+|+++++ ++|+++.++.|. .++++.+.+.
T Consensus 67 --------------------~~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 67 --------------------EKIIEVPHFLFY-KDGEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred --------------------cCCCcCCEEEEE-eCCeEEEEEeCC-CHHHHHHHHH
Confidence 356667885555 999999999985 5666766654
No 60
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=107.18 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=93.1
Q ss_pred ceEeecCCCCeeecC-ccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC--CeEEEEeeCCCCCCCCCCCHHHHHHH
Q 030845 14 EFTVKDSKGKDVDLS-IYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK--GLEILAFPCNQFLKQEPGTSQEAHEF 90 (170)
Q Consensus 14 ~f~l~~~~G~~v~l~-~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~ 90 (170)
...|...+|..+..+ .++||++.++|.|.|||+|+...|.|+++|++.++. .++||.||.|. +.+++..|
T Consensus 14 g~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-------~~~~~~~y 86 (157)
T KOG2501|consen 14 GNRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-------DEESLDEY 86 (157)
T ss_pred CCeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-------CHHHHHHH
Confidence 367888999998777 579999999999999999999999999999999865 59999999885 68889999
Q ss_pred HHHhcCCCCceeEEeecCCCC-CchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEec
Q 030845 91 ACTRYKAEYPIFQKVRVNGPN-AEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRY 150 (170)
Q Consensus 91 ~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~ 150 (170)
. ..++..|..+. .+.. ..++-+. |.+..+|+..++.++|..+...
T Consensus 87 ~-~~~~~~W~~iP----f~d~~~~~l~~k----------y~v~~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 87 M-LEHHGDWLAIP----FGDDLIQKLSEK----------YEVKGIPALVILKPDGTVVTED 132 (157)
T ss_pred H-HhcCCCeEEec----CCCHHHHHHHHh----------cccCcCceeEEecCCCCEehHh
Confidence 8 46777777663 2322 2222222 5899999999999999888653
No 61
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.64 E-value=2.7e-15 Score=97.33 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=71.7
Q ss_pred cCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCC
Q 030845 30 YKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNG 109 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (170)
..|++++|.||++||++|+.+.|.+.++.+++++.++.++.|++|. .. ..+ .+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------~~---~l~-~~--------------- 74 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------ER---RLA-RK--------------- 74 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--------cH---HHH-HH---------------
Confidence 4689999999999999999999999999999987678888887652 11 122 12
Q ss_pred CCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 110 PNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
++|..+|+++++ ++|+++.+..|..+.+++.+.|+++
T Consensus 75 -------------------~~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 75 -------------------LGAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred -------------------cCCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 256777998888 5999999989987888887777654
No 62
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.62 E-value=5.9e-15 Score=94.28 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=66.9
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+++++|+||++||++|+.+.|.|.++++++++..+.++.++.| ..+ .+ .+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~~----~~-~~---------------- 66 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TID----TL-KR---------------- 66 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CHH----HH-HH----------------
Confidence 57899999999999999999999999999998666788888654 121 22 22
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
++++..|++ ++.++|+.+.+..|. +++.+.+.|+++
T Consensus 67 ------------------~~v~~~Pt~-~~~~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 67 ------------------YRGKCEPTF-LFYKNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred ------------------cCCCcCcEE-EEEECCEEEEEEecC-ChHHHHHHHhhC
Confidence 256667874 455799999999885 677788777653
No 63
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.2e-15 Score=99.65 Aligned_cols=160 Identities=13% Similarity=0.211 Sum_probs=115.4
Q ss_pred CCCCCCCCCCcccceEeecCCCCeeecCccCC-cEEEEE-EecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCC
Q 030845 1 MGASESVPQKSIYEFTVKDSKGKDVDLSIYKG-KVLLIV-NVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLK 78 (170)
Q Consensus 1 ~~~~~~~~~~~~p~f~l~~~~G~~v~l~~~~g-k~~ll~-f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~ 78 (170)
|.+..+..|..+|+|+..+..|+ +++.++.| -+.+|+ .-+.+.|.|..++..+..+..+|.++|+..|++|+|...+
T Consensus 1 m~~~~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves 79 (224)
T KOG0854|consen 1 MDGPRLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES 79 (224)
T ss_pred CCCCcccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence 66777889999999999889888 78999876 444443 3488999999999999999999999999999999996544
Q ss_pred CCCCCHHHHHHHHHHh-cCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecC----CC
Q 030845 79 QEPGTSQEAHEFACTR-YKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYS----PT 153 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~----g~ 153 (170)
+.. ..++++.|++.. +.++||++.|.. ....-++.++........+.+.. ..++|+||++.+|+-.+. -.
T Consensus 80 H~~-Wi~DIks~~~~~~~~~~yPIIaD~~---rela~~l~MlD~~e~~~~~~~~T-~Ravfvi~pdkKirLs~lYP~ttG 154 (224)
T KOG0854|consen 80 HKD-WIKDIKSYAKVKNHSVPYPIIADPN---RELAFLLNMLDPEEKKNIGDGKT-VRAVFVIDPDKKIRLSFLYPSTTG 154 (224)
T ss_pred HHH-HHHHHHHHHhccCCCCCCCeecCCc---hhhhhhhcccCHhHcCCCCCCce-EEEEEEECCCceEEEEEEcccccC
Confidence 432 356777777422 237899997532 33344455665554444332221 347899999999987751 13
Q ss_pred CCchhHHHHHHHH
Q 030845 154 TSPMAIEGDIKNA 166 (170)
Q Consensus 154 ~~~~~~~~~l~~l 166 (170)
.+.+++.+.|+.|
T Consensus 155 RN~dEiLRvidsL 167 (224)
T KOG0854|consen 155 RNFDEILRVIDSL 167 (224)
T ss_pred cCHHHHHHHHHHH
Confidence 3567777777665
No 64
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.61 E-value=8.6e-15 Score=96.88 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=75.2
Q ss_pred CC-cEEEEEEecCCCCCchHhHHHHH---HHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEee
Q 030845 31 KG-KVLLIVNVASKCGFTDSNYSQLT---DLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVR 106 (170)
Q Consensus 31 ~g-k~~ll~f~~~~C~~C~~~~~~l~---~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 106 (170)
.| |+++|.||++||++|+.+.+.+. ++.+.+++ ++.++.|+.+. +. ....|- .
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~-~~~~~~--~------------ 68 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DK-EVTDFD--G------------ 68 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cc-eeeccC--C------------
Confidence 57 99999999999999999998875 56666654 58888888763 11 111110 0
Q ss_pred cCCCCCchHHHHHhhhcCCccCcccccCceEEEECCC-CcEEEecCCCCCchhHHHHHHHHhhc
Q 030845 107 VNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTE-GNVIGRYSPTTSPMAIEGDIKNALGD 169 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~-G~i~~~~~g~~~~~~~~~~l~~ll~~ 169 (170)
.......+... +++..+|++++++++ |+++.+..|..+.+++.+.|+.++++
T Consensus 69 -~~~~~~~l~~~----------~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 69 -EALSEKELARK----------YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred -CCccHHHHHHH----------cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 00011111111 478889999999999 89999999988889999999988764
No 65
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.61 E-value=4.5e-15 Score=94.44 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=64.0
Q ss_pred CccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeec
Q 030845 28 SIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRV 107 (170)
Q Consensus 28 ~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (170)
++++||+++|.||++||++|+.++|.+.++.+++++ +.++.|..+. .. ...+ .+
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~-------~~---~~l~-~~------------- 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESS-------IK---PSLL-SR------------- 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCC-------CC---HHHH-Hh-------------
Confidence 457899999999999999999999999999999964 7777774320 00 1111 11
Q ss_pred CCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 108 NGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
++|..+||++++++ | .+.++.|..+.+++.+.
T Consensus 68 ---------------------~~V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 68 ---------------------YGVVGFPTILLFNS-T-PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred ---------------------cCCeecCEEEEEcC-C-ceeEecCCCCHHHHHhh
Confidence 36777899999975 4 67788888777766554
No 66
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.60 E-value=6e-15 Score=94.55 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=69.7
Q ss_pred CCcEEEEEEecCCCCCchHhHHHH---HHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeec
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQL---TDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRV 107 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (170)
.||++||.||++||++|..+.+.+ .++.+.+++ ++.++.|..+. +......++ .+
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~------------- 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KR------------- 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HH-------------
Confidence 579999999999999999998877 577777765 68998887652 222234444 22
Q ss_pred CCCCCchHHHHHhhhcCCccCcccccCceEEEECC-CCcEEEecCCCCCchhHHHHH
Q 030845 108 NGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDT-EGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~l 163 (170)
+++..+|+++++++ +|+++.++.|..+.+++.+.|
T Consensus 68 ---------------------~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 68 ---------------------FGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ---------------------cCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 25667799999999 999999999988888777665
No 67
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.7e-15 Score=97.59 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=74.5
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+.||||.|||+||++|+...|.|.++..+|.++ +.++-|++|. .. +.+ ++
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~~----ela-~~---------------- 110 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------HP----ELA-ED---------------- 110 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------cc----chH-hh----------------
Confidence 4689999999999999999999999999999776 9999998762 11 111 12
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
|+|...|+++++ ++|+.+.+..|..+.+.+.+.|+++++
T Consensus 111 ------------------Y~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 111 ------------------YEISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ------------------cceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 467777886666 899999999999999999999999875
No 68
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.59 E-value=6.5e-15 Score=109.25 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=81.3
Q ss_pred CCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCce
Q 030845 22 GKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPI 101 (170)
Q Consensus 22 G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (170)
.+...+++++|+++||+||++||++|..++|.|+++.+++ ++.|++|++|. ... ..||.
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~~-----------~~fp~ 214 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GPL-----------PGFPN 214 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Ccc-----------ccCCc
Confidence 3446788899999999999999999999999999999997 48999999874 110 11443
Q ss_pred eEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCC-CcEEEecCCCCCchhHHHHHHHHhh
Q 030845 102 FQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTE-GNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 102 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~-G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
+. .. .++... ++|..+|++||+|++ |++.....|..+.+++.+.+..+..
T Consensus 215 ~~---~d----~~la~~----------~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 215 AR---PD----AGQAQQ----------LKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred cc---CC----HHHHHH----------cCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 31 01 111222 478899999999995 6666667788889998888876653
No 69
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.58 E-value=2.4e-14 Score=90.34 Aligned_cols=85 Identities=11% Similarity=0.160 Sum_probs=67.3
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
+++++||+||++||++|+.+.+.+.++.+.+++. +.++.|+++. . ...+ .+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~---~~l~-~~---------------- 61 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDA--------Q---PQIA-QQ---------------- 61 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccC--------C---HHHH-HH----------------
Confidence 5789999999999999999999999999999764 8888887652 1 1222 12
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
+++...|++++++ +|+++.++.|..+.+++...|
T Consensus 62 ------------------~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 62 ------------------FGVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred ------------------cCCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 2566678999996 999999999887777777665
No 70
>PRK09381 trxA thioredoxin; Provisional
Probab=99.56 E-value=4.1e-14 Score=91.39 Aligned_cols=90 Identities=19% Similarity=0.188 Sum_probs=72.0
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+++++|.||++|||+|..+.|.++++.+++++. +.++.++++. .. . .+ .+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~~-~---~~-~~---------------- 70 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP-G---TA-PK---------------- 70 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------Ch-h---HH-Hh----------------
Confidence 4689999999999999999999999999999864 8889987752 11 1 11 11
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
+++...|+++++ ++|+++.+..|..+.+++.+.|++.++
T Consensus 71 ------------------~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 71 ------------------YGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred ------------------CCCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 256667887888 799999999998888889888887764
No 71
>PRK10996 thioredoxin 2; Provisional
Probab=99.53 E-value=3.1e-13 Score=90.99 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=70.6
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+|+++|+||++||++|+.+.+.|.++.+++.+. +.++.|..+. .. +++ .+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~-------~~----~l~-~~---------------- 101 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTEA-------ER----ELS-AR---------------- 101 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCCC-------CH----HHH-Hh----------------
Confidence 5799999999999999999999999999998764 8888886542 11 222 12
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
++|..+|+++++ ++|+++.++.|..+.+++.++|++++
T Consensus 102 ------------------~~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 102 ------------------FRIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred ------------------cCCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 356667887766 59999999999888888999888764
No 72
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.52 E-value=9.2e-14 Score=89.59 Aligned_cols=79 Identities=10% Similarity=-0.059 Sum_probs=60.8
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.++++||.|||+||++|+.+.|.|.++.+++++. +.++-|.+|. .. +.+ ++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-------~~----~la-~~---------------- 63 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-------VP----DFN-KM---------------- 63 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-------CH----HHH-HH----------------
Confidence 4689999999999999999999999999999865 7889997763 12 222 22
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCch
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPM 157 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~ 157 (170)
++|..+|+++++ ++|+.+.+..|..+..
T Consensus 64 ------------------~~V~~iPTf~~f-k~G~~v~~~~G~~~~~ 91 (114)
T cd02954 64 ------------------YELYDPPTVMFF-FRNKHMKIDLGTGNNN 91 (114)
T ss_pred ------------------cCCCCCCEEEEE-ECCEEEEEEcCCCCCc
Confidence 356667886555 7999999987755443
No 73
>PHA02278 thioredoxin-like protein
Probab=99.50 E-value=1.4e-13 Score=87.80 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=62.2
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.++++||+|||+||++|+.+.|.|.++.+++.. .+.++.|.+|. +.. .....+ ++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~------~~~-d~~~l~-~~---------------- 67 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDA------EDV-DREKAV-KL---------------- 67 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCc------ccc-ccHHHH-HH----------------
Confidence 578999999999999999999999999887543 36678887763 110 011222 22
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEG 161 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (170)
++|..+|++ ++-++|+.+.+..|..+.+++.+
T Consensus 68 ------------------~~I~~iPT~-i~fk~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 68 ------------------FDIMSTPVL-IGYKDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred ------------------CCCccccEE-EEEECCEEEEEEeCCCCHHHHHh
Confidence 357777875 45578999999999776665443
No 74
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.50 E-value=1.2e-13 Score=87.96 Aligned_cols=84 Identities=10% Similarity=0.182 Sum_probs=65.3
Q ss_pred cCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCC
Q 030845 30 YKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNG 109 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (170)
..+++++|.||++||++|+.+.|.+.++.+++++. +.+..|++|. . ...+ ++
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~----~~~~-~~--------------- 67 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------D----RMLC-RS--------------- 67 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------c----HHHH-HH---------------
Confidence 35689999999999999999999999999999864 8899998762 1 1233 22
Q ss_pred CCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHH
Q 030845 110 PNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEG 161 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~ 161 (170)
++|..+|+++++ ++|+.+.++.|..+.+++.+
T Consensus 68 -------------------~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 68 -------------------QGVNSYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred -------------------cCCCccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 256667887777 78988888888777776554
No 75
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.5e-13 Score=85.67 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=66.8
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+|+++|+|+|+||++|+.+.|.+.++..+|++ +.++.|++| . ....+. +
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~~-~---------------- 69 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVAK-E---------------- 69 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHHH-h----------------
Confidence 469999999999999999999999999999988 999999775 1 444442 2
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKN 165 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 165 (170)
+++..+||+.++ ++|+.+.+..|.. .+++.+.+.+
T Consensus 70 ------------------~~V~~~PTf~f~-k~g~~~~~~vGa~-~~~l~~~i~~ 104 (106)
T KOG0907|consen 70 ------------------FNVKAMPTFVFY-KGGEEVDEVVGAN-KAELEKKIAK 104 (106)
T ss_pred ------------------cCceEeeEEEEE-ECCEEEEEEecCC-HHHHHHHHHh
Confidence 356667886666 9999999998864 4455555543
No 76
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.48 E-value=5.6e-13 Score=89.15 Aligned_cols=91 Identities=10% Similarity=-0.004 Sum_probs=68.9
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.++++||.|||+||++|+.+-|.|.++.+++++. +.++-|.+|. .. +++ ..+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe--------~~---dla-~~y--------------- 73 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE--------VP---DFN-TMY--------------- 73 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC--------CH---HHH-HHc---------------
Confidence 5689999999999999999999999999999876 8889997762 22 333 232
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCc-EEEecCC--------CCCchhHHHHHHHHhh
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGN-VIGRYSP--------TTSPMAIEGDIKNALG 168 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~-i~~~~~g--------~~~~~~~~~~l~~ll~ 168 (170)
+|...|+++++-++|+ .+++..| ..+.+++.+.++.+++
T Consensus 74 -------------------~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 74 -------------------ELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred -------------------CccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 3444467776778888 8888888 4556677777777664
No 77
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.48 E-value=6.7e-14 Score=90.72 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=66.8
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHH---HHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeec
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDL---YNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRV 107 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~---~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (170)
.||+++++||.+|||+|+...+.+.+. ...+++ ++.++.++++. .......+. ...+...+...
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~---- 70 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVL-DFDGQKNVRLS---- 70 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHH-SHTCHSSCHHH----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------ccccccccc-ccccchhhhHH----
Confidence 579999999999999999888888754 444433 48888888752 223333443 22121111110
Q ss_pred CCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 108 NGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
...+.+. +++.++|+++++|++|+++.+..|..+++++.+.|
T Consensus 71 ----~~~l~~~----------~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 71 ----NKELAQR----------YGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp ----HHHHHHH----------TT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ----HHHHHHH----------cCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 0112222 48999999999999999999999999998887764
No 78
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.47 E-value=6.3e-13 Score=84.60 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=64.0
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
+|+ ++|.||++||++|+.+.|.+.++.++++..++.+..|.++. .. ..+ .+
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~----~~~-~~---------------- 66 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EP----GLS-GR---------------- 66 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CH----hHH-HH----------------
Confidence 556 57999999999999999999999998876678888887652 11 122 12
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIK 164 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 164 (170)
+++..+|+++++ ++|++ .++.|..+.+++.+.|+
T Consensus 67 ------------------~~i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 67 ------------------FFVTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred ------------------cCCcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 356667898776 88985 67888777777777665
No 79
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.46 E-value=5.8e-13 Score=86.04 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
+||+++|.||++||++|+.+.+.+.++.+++++.++.++.|.+|. +. ..++.+.
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~---~~~~~~~---------------- 73 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQ---REFAKEE---------------- 73 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cc---hhhHHhh----------------
Confidence 579999999999999999999999999999997779999997652 01 1222111
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCC-CCchhHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPT-TSPMAIEGD 162 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~-~~~~~~~~~ 162 (170)
+++..+|+++++++++.....|.|. .+.+.+..+
T Consensus 74 ------------------~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f 108 (109)
T cd02993 74 ------------------LQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMF 108 (109)
T ss_pred ------------------cCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence 2566678999999888777778874 455655443
No 80
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.46 E-value=6.1e-13 Score=85.20 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=63.8
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC--CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK--GLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVN 108 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 108 (170)
++++++|.||++||++|+.+.|.+.++.+++++. ++.+..+.++. . ...+ ++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~---~~~~-~~-------------- 67 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------Y---SSIA-SE-------------- 67 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------C---HhHH-hh--------------
Confidence 4579999999999999999999999999999754 36677775531 1 1122 11
Q ss_pred CCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 109 GPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
++|..+|++++++ +| ...++.|..+.+++.+.+++.
T Consensus 68 --------------------~~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 68 --------------------FGVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred --------------------cCCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence 3677779999994 44 456688877777777776653
No 81
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.45 E-value=8.3e-13 Score=84.50 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=65.3
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+++++|.||++||++|+.+.|.+.++.+++++. +.+..|+++. . .+.+ ++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~--------~---~~~~-~~---------------- 68 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQK--------Y---ESLC-QQ---------------- 68 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCc--------h---HHHH-HH----------------
Confidence 4679999999999999999999999999998654 8888887652 1 1233 22
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCC-chhHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTS-PMAIEGD 162 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~-~~~~~~~ 162 (170)
++|..+|+++++...|+.+.++.|..+ .+++.+.
T Consensus 69 ------------------~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 69 ------------------ANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred ------------------cCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 256667898999777688999998766 6666544
No 82
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.45 E-value=2.2e-12 Score=84.85 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=66.2
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.|+.++|+|+++|||+|+...|.|.++.++ .++.++.|++|.-...+..+.+++.++. ++++..+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~----------- 86 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPT----------- 86 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHH-HHcCCcc-----------
Confidence 467899999999999999999999999998 2367888887741111222334666776 3443322
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCC-CchhHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTT-SPMAIEGD 162 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~-~~~~~~~~ 162 (170)
++..+|+++++ ++|+.+.+..|.. +.+++.+.
T Consensus 87 -------------------~i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 87 -------------------SFMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred -------------------cCCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHH
Confidence 35556886644 8999999988843 44555443
No 83
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.44 E-value=9.6e-13 Score=85.31 Aligned_cols=85 Identities=12% Similarity=0.046 Sum_probs=64.8
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.++++||.|||+||++|+.+.|.+.++.+++++. +.++.|++|. ... .+.++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~--------~~~---l~~~~---------------- 79 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW--------PQG---KCRKQ---------------- 79 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC--------ChH---HHHHh----------------
Confidence 5689999999999999999999999999999765 8889997652 111 12112
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
++|..+|++.++ ++|+...++.|..+.+.+..+
T Consensus 80 ------------------~~I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 80 ------------------KHFFYFPVIHLY-YRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred ------------------cCCcccCEEEEE-ECCccceEEeCCCCHHHHHhh
Confidence 245556887777 788888888888777776553
No 84
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1e-12 Score=88.88 Aligned_cols=130 Identities=16% Similarity=0.194 Sum_probs=92.4
Q ss_pred CCcccceEee---cCCCCeeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCH
Q 030845 9 QKSIYEFTVK---DSKGKDVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTS 84 (170)
Q Consensus 9 ~~~~p~f~l~---~~~G~~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 84 (170)
..++|+|.-+ |..-+.++|++++||++++.|+ ..+.-.|+.+...+.+..++|++.|.+|+++|+| +.
T Consensus 7 ~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D--------S~ 78 (196)
T KOG0852|consen 7 FKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD--------SV 78 (196)
T ss_pred CCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------ch
Confidence 3344777744 4455678999999999999998 5677789999999999999999999999999998 56
Q ss_pred HHHHHHHH---HhcCC---CCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCc
Q 030845 85 QEAHEFAC---TRYKA---EYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSP 156 (170)
Q Consensus 85 ~~~~~~~~---~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~ 156 (170)
....+|+. ++.++ ++|+++|...+.... |..+.... ++. ...+||||++|.+|.......+.
T Consensus 79 fshlAW~ntprk~gGlg~~~iPllsD~~~~Isrd---yGvL~~~~------G~~-lRglfIId~~gi~R~it~NDlpv 146 (196)
T KOG0852|consen 79 FSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRD---YGVLKEDE------GIA-LRGLFIIDPDGILRQITINDLPV 146 (196)
T ss_pred hhhhhHhcCchhhCCcCccccceeeccchhhHHh---cCceecCC------Ccc-eeeeEEEccccceEEeeecccCC
Confidence 66666663 33444 499998754333322 33333222 221 23679999999999866444433
No 85
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.43 E-value=5.9e-13 Score=84.60 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=69.7
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC-CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK-GLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNG 109 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (170)
++++++|.||++||+.|+.+.+.+.++.+.++.. ++.++.+.++. ....+ ++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----------~~~~~-~~--------------- 64 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-----------EKDLA-SR--------------- 64 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-----------hHHHH-Hh---------------
Confidence 6899999999999999999999999999999765 37887776541 12222 12
Q ss_pred CCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 110 PNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
+++...|+++++++++. +..+.|..+.+++...|++.
T Consensus 65 -------------------~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 65 -------------------FGVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred -------------------CCCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 35667799999998887 67788888888888887764
No 86
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.43 E-value=1.5e-12 Score=82.30 Aligned_cols=85 Identities=13% Similarity=0.215 Sum_probs=65.6
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+++++++||++||+.|..+.+.+.++.+++.+ ++.++.++.|. .. +.+ .+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~--------~~---~l~-~~---------------- 62 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE--------DQ---EIA-EA---------------- 62 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC--------CH---HHH-HH----------------
Confidence 568999999999999999999999999999875 48888887652 11 122 12
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
+++..+|+++++ ++|+++.+..|..+.+++.+.|
T Consensus 63 ------------------~~v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 63 ------------------AGIMGTPTVQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred ------------------CCCeeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 245667898999 5899999998877777666554
No 87
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.43 E-value=5.4e-13 Score=84.89 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=62.3
Q ss_pred EEEEEEecCCCCCchHhHHHHHHHHHHhcc--CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCC
Q 030845 34 VLLIVNVASKCGFTDSNYSQLTDLYNKYKH--KGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPN 111 (170)
Q Consensus 34 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (170)
+++|.||++||++|+.+.|.+.++.+++++ .++.++.|.++. .. ..+ .+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--------~~---~~~-~~----------------- 68 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--------HR---ELC-SE----------------- 68 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--------Ch---hhH-hh-----------------
Confidence 599999999999999999999999999976 358888886542 11 122 11
Q ss_pred CchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 112 AEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
+++...|+++++ ++|+.+.++.|..+.+++.+.
T Consensus 69 -----------------~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 69 -----------------FQVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred -----------------cCCCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence 256667898888 788888889998776665543
No 88
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.42 E-value=9.8e-13 Score=84.78 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+++++|.||++||++|+.+.+.+.++.+++++. +.++.|+++. +.....+ .+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~---------~~~~~~~-~~---------------- 69 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE---------DKNKPLC-GK---------------- 69 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc---------cccHHHH-HH----------------
Confidence 4789999999999999999999999999998754 8888888762 1112233 12
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCC----cEEEecCCCCCchhHHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEG----NVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G----~i~~~~~g~~~~~~~~~~l 163 (170)
+++...|+++++++.+ .+...+.|..+.+++.++|
T Consensus 70 ------------------~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 70 ------------------YGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred ------------------cCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 2566679999998887 3556778877777776654
No 89
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.4e-13 Score=98.31 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=75.0
Q ss_pred cCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCC
Q 030845 30 YKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNG 109 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (170)
.+.+||||+||++||++|...+|.|.++..+++.+ +.+.-|++|. .+.. + .+
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------~p~v----A-aq--------------- 92 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------EPMV----A-AQ--------------- 92 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------chhH----H-HH---------------
Confidence 35579999999999999999999999999999886 9999998873 1111 1 11
Q ss_pred CCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 110 PNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
.+|+.+|++|++ ++|+-+.-+.|..+.+.++++|++++.
T Consensus 93 -------------------fgiqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 93 -------------------FGVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred -------------------hCcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 267788998888 899999999998877789999988764
No 90
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.39 E-value=5.5e-12 Score=79.84 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=68.6
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPN 111 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (170)
+++++|.||++||+.|....+.|+++.+++.+. +.++.|..+. .. .++ .+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~-------~~----~~~-~~----------------- 63 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVDE-------NP----DIA-AK----------------- 63 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECCC-------CH----HHH-HH-----------------
Confidence 579999999999999999999999999988753 8999987652 11 122 12
Q ss_pred CchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 112 AEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
+++...|+++++ ++|+++.+..|..+.+++.+.|++.+
T Consensus 64 -----------------~~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 64 -----------------YGIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred -----------------cCCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 256667898888 78888888888888788888887653
No 91
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.37 E-value=9.3e-13 Score=86.08 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=35.6
Q ss_pred cCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 27 LSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 27 l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
.+..++|++||.||++||++|+.+.+.+.+..+.... +..++.|.+|
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 3445789999999999999999999999997665432 2445555554
No 92
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.35 E-value=1.2e-11 Score=78.59 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=70.0
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.++++||.|+++||++|+...|.+.++.+++++ ++.++.|..+. . ...+ ++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~----~~l~-~~---------------- 66 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N----KELC-KK---------------- 66 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S----HHHH-HH----------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c----chhh-hc----------------
Confidence 369999999999999999999999999999987 69999997652 1 3333 23
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKN 165 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 165 (170)
+++..+|+++++ ++|+...++.|..+.+.+.+.|++
T Consensus 67 ------------------~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 67 ------------------YGVKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp ------------------TTCSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred ------------------cCCCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 256666886666 777778799998889999988875
No 93
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.34 E-value=9.1e-12 Score=89.80 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=68.7
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPN 111 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (170)
+++++|.||++||++|+.+.|.+.++.+++++. +.+..|.++. . .+.+ ++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~--------~---~~l~-~~----------------- 101 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATR--------A---LNLA-KR----------------- 101 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcc--------c---HHHH-HH-----------------
Confidence 579999999999999999999999999999864 7777775431 1 1222 22
Q ss_pred CchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 112 AEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
++|..+|++++++ +|+++....|..+.+++.+.+.+..+
T Consensus 102 -----------------~~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 102 -----------------FAIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred -----------------cCCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 3677778988887 78888877887888888888877653
No 94
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.34 E-value=4.9e-12 Score=81.51 Aligned_cols=85 Identities=20% Similarity=0.202 Sum_probs=61.8
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC-----CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEe
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK-----GLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKV 105 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-----~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 105 (170)
.+++++|.||++||++|+...|.+.++.+++++. .+.+..|.+|. . ...+ .+
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-------~----~~l~-~~----------- 73 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-------E----SDIA-DR----------- 73 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-------C----HHHH-Hh-----------
Confidence 4689999999999999999999999999887531 37788887652 1 1233 23
Q ss_pred ecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCc-EEEecCCCCCchhHHHH
Q 030845 106 RVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGN-VIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~-i~~~~~g~~~~~~~~~~ 162 (170)
++|..+|+++++ ++|+ +...+.|..+.+++.+.
T Consensus 74 -----------------------~~v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 74 -----------------------YRINKYPTLKLF-RNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred -----------------------CCCCcCCEEEEE-eCCcCcceecCCCCCHHHHHhh
Confidence 356667888877 6788 44667787777766554
No 95
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.33 E-value=1.3e-11 Score=83.93 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=60.8
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
++++++|+||++||++|+.+.|.+.++.+++++.++.++.|++|. .. +.+ +++++...
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-------~~----~la-~~~~V~~~---------- 103 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-------FP----NVA-EKFRVSTS---------- 103 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-------CH----HHH-HHcCceec----------
Confidence 467999999999999999999999999999987679999998763 22 223 23332110
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCC
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSP 152 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g 152 (170)
++++.+||++++ ++|+.+.+..|
T Consensus 104 ------------------~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 104 ------------------PLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred ------------------CCcCCCCEEEEE-ECCEEEEEEec
Confidence 245567886666 69999988865
No 96
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.31 E-value=1.4e-11 Score=100.34 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=70.3
Q ss_pred cCCcEEEEEEecCCCCCchHhHHHH---HHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEee
Q 030845 30 YKGKVLLIVNVASKCGFTDSNYSQL---TDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVR 106 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 106 (170)
.+||+++|+||++||++|+.+.+.. .++.++++ ++.++.+.++. +.++.++++ ++
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~------------ 529 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KH------------ 529 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HH------------
Confidence 4689999999999999999877654 56777775 37777777652 223334444 23
Q ss_pred cCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEE--EecCCCCCchhHHHHHHHHh
Q 030845 107 VNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVI--GRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~--~~~~g~~~~~~~~~~l~~ll 167 (170)
+++..+|+++++|++|+++ .++.|..+++++.+.|+++.
T Consensus 530 ----------------------~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 530 ----------------------YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred ----------------------cCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 3566679999999999984 67889888999998888753
No 97
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.31 E-value=1.6e-11 Score=77.36 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=60.4
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPN 111 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (170)
+++++|.||++||++|+.+.+.|.++.+++ ..++.++.+..+. ....+ .+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~-----------~~~~~-~~----------------- 63 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE-----------LPEIS-EK----------------- 63 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc-----------CHHHH-Hh-----------------
Confidence 689999999999999999999999999997 3358888885431 11222 22
Q ss_pred CchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 112 AEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
+++...|+++++ ++|+++.+..|. .++++.+.|
T Consensus 64 -----------------~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 64 -----------------FEITAVPTFVFF-RNGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred -----------------cCCccccEEEEE-ECCEEEEEEeCC-CHHHHHHhh
Confidence 245566887777 589999988875 455555443
No 98
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.4e-11 Score=79.32 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=92.9
Q ss_pred CCCCCCCcccceEeecCCCCeeecCccCCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCC
Q 030845 4 SESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPG 82 (170)
Q Consensus 4 ~~~~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 82 (170)
.....|..+|+|++.+.|.+.+++.++.||..+|..+ +-..|.|..+...+++...++.+ +.++.||+|
T Consensus 16 ~~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D-------- 85 (158)
T COG2077 16 NEPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD-------- 85 (158)
T ss_pred CCCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------
Confidence 3467899999999999999999999999988888777 45888999999999999998866 999999988
Q ss_pred CHHHHHHHHHHhcCCC-CceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEec
Q 030845 83 TSQEAHEFACTRYKAE-YPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRY 150 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~ 150 (170)
-+-..++|+. ..++. ...++|.. .....+-|..+..+.+ + .++-. .++|++|.+|+|++.-
T Consensus 86 LPFAq~RfC~-aeGi~nv~~lSd~r--~~~Fge~yGv~I~egp--L-~gLlA-RaV~V~De~g~V~y~e 147 (158)
T COG2077 86 LPFAQKRFCG-AEGIENVITLSDFR--DRAFGENYGVLINEGP--L-AGLLA-RAVFVLDENGKVTYSE 147 (158)
T ss_pred ChhHHhhhhh-hcCcccceEhhhhh--hhhhhHhhCEEecccc--c-cCeee-eEEEEEcCCCcEEEEE
Confidence 5778889994 66775 44454321 1111111211111111 0 01111 3679999999999874
No 99
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.30 E-value=1.7e-11 Score=78.16 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=62.1
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC-CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK-GLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNG 109 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (170)
++++++|.||++||++|+.+.+.+.++.+++++. .+.++.+..+. + ....++ .+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~---~~~~~~-~~--------------- 70 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK------P---EHDALK-EE--------------- 70 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC------C---ccHHHH-Hh---------------
Confidence 5679999999999999999999999999999743 46676676541 0 111222 12
Q ss_pred CCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 110 PNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
+++..+|+++ +.++|+++.++.|..+.+++.+.
T Consensus 71 -------------------~~i~~~Pt~~-~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 71 -------------------YNVKGFPTFK-YFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred -------------------CCCccccEEE-EEeCCCeeEEeCCCCCHHHHHhh
Confidence 2566668754 45688988899988777766554
No 100
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.28 E-value=5.4e-11 Score=77.75 Aligned_cols=88 Identities=9% Similarity=0.114 Sum_probs=68.2
Q ss_pred CcEEEEEEecCCCCC--ch--HhHHHHHHHHHHh-ccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEee
Q 030845 32 GKVLLIVNVASKCGF--TD--SNYSQLTDLYNKY-KHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVR 106 (170)
Q Consensus 32 gk~~ll~f~~~~C~~--C~--~~~~~l~~~~~~~-~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 106 (170)
..++|++||+.||++ |+ ...|.|.++.+++ ++.++.++-|++|. . .+.+ .+
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-------~----~~La-~~------------ 82 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-------D----AKVA-KK------------ 82 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------C----HHHH-HH------------
Confidence 368999999999987 99 7788899988887 23359999998763 1 2233 22
Q ss_pred cCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 107 VNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
++|..+||++++ ++|+++. +.|..+.+.+.+.|++++
T Consensus 83 ----------------------~~I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 83 ----------------------LGLDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ----------------------cCCccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 367777887777 6999887 999888999999998876
No 101
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.28 E-value=2.2e-11 Score=77.71 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=65.4
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhcc-CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKH-KGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNG 109 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (170)
.+++++|.||++||++|+...+.+.++.++++. .++.++.+..+. . ...++ .+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~---~~~~~-~~--------------- 70 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------A---NKDLA-KK--------------- 70 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------c---chhhH-Hh---------------
Confidence 357999999999999999999999999999973 358888887552 0 12222 12
Q ss_pred CCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 110 PNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
+++..+|+++++++.|+....+.|..+.+++.+.
T Consensus 71 -------------------~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 71 -------------------YGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred -------------------CCCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 2566678999999888777788887777666554
No 102
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.26 E-value=2.7e-11 Score=76.35 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhc-cCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYK-HKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNG 109 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (170)
++++++|.||++||++|....+.+.++.+.++ ..++.++.|+.+. ...++ ++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~-~~--------------- 66 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----------NNDLC-SE--------------- 66 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----------hHHHH-Hh---------------
Confidence 45699999999999999999999999999996 4468888886541 22333 22
Q ss_pred CCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHH
Q 030845 110 PNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGD 162 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~ 162 (170)
++++..|++++++++|....++.|..+.+++.+.
T Consensus 67 -------------------~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 67 -------------------YGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred -------------------CCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 2566679999999888778888887666666543
No 103
>PTZ00051 thioredoxin; Provisional
Probab=99.25 E-value=4.5e-11 Score=75.51 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=58.2
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+++++|+||++||++|+.+.+.+.++.+++.+ +.++.|+.+. ....+ ++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~-----------~~~~~-~~---------------- 66 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDE-----------LSEVA-EK---------------- 66 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcc-----------hHHHH-HH----------------
Confidence 468999999999999999999999999998754 7787776431 12223 22
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAI 159 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~ 159 (170)
+++...|+++ +.++|+++.++.|. .++++
T Consensus 67 ------------------~~v~~~Pt~~-~~~~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 67 ------------------ENITSMPTFK-VFKNGSVVDTLLGA-NDEAL 95 (98)
T ss_pred ------------------CCCceeeEEE-EEeCCeEEEEEeCC-CHHHh
Confidence 2566678855 44899999999885 44443
No 104
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.24 E-value=1.1e-10 Score=74.28 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=63.1
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPN 111 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (170)
+++++|.||++||++|+...+.+.++.++++.. +.++.+..+. . .+.+ .+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~~--------~---~~~~-~~----------------- 67 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADV--------H---QSLA-QQ----------------- 67 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECcc--------h---HHHH-HH-----------------
Confidence 567999999999999999999999999998764 8888886541 1 1222 12
Q ss_pred CchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 112 AEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
++++..|++++++++......+.|..+.+++.+++
T Consensus 68 -----------------~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 68 -----------------YGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred -----------------CCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 25666789899976656666788877777766553
No 105
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.22 E-value=1.5e-10 Score=74.25 Aligned_cols=82 Identities=10% Similarity=0.072 Sum_probs=63.7
Q ss_pred CCcEEEEEEecCC--CCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecC
Q 030845 31 KGKVLLIVNVASK--CGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVN 108 (170)
Q Consensus 31 ~gk~~ll~f~~~~--C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 108 (170)
.|.+++|.||++| ||+|..+.|.|.++.++|+++ +.++-|+.|. .. +.+ .+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------~~----~la-~~-------------- 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------EQ----ALA-AR-------------- 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------CH----HHH-HH--------------
Confidence 5678899999997 999999999999999999876 8888887662 22 222 22
Q ss_pred CCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHH
Q 030845 109 GPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIE 160 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~ 160 (170)
++|..+||++++ ++|+++.+..|..+-+++.
T Consensus 79 --------------------f~V~sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 79 --------------------FGVLRTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred --------------------cCCCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 367777885555 7999999999977766654
No 106
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.21 E-value=1.1e-10 Score=74.87 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=39.0
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
.+|++||.|+++||++|+.+-|.|.++.+++++. +.++.|.+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 6899999999999999999999999999999765 888998654
No 107
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.20 E-value=3e-10 Score=69.31 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=58.2
Q ss_pred EEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCCCch
Q 030845 35 LLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEP 114 (170)
Q Consensus 35 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (170)
.+..||++||++|+...+.|.++.++++.. +.++.|..+. ..+. + .+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~~----~-~~-------------------- 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQK----A-ME-------------------- 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHHH----H-HH--------------------
Confidence 466799999999999999999999998654 8888886542 1211 1 11
Q ss_pred HHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 115 LYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
+++..+|++++ +|+. ++.|..+.+++.+.|++++
T Consensus 49 --------------~~v~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 49 --------------YGIMAVPAIVI---NGDV--EFIGAPTKEELVEAIKKRL 82 (82)
T ss_pred --------------cCCccCCEEEE---CCEE--EEecCCCHHHHHHHHHhhC
Confidence 25666788665 6664 5667767888888887754
No 108
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.20 E-value=3.6e-10 Score=73.43 Aligned_cols=90 Identities=13% Similarity=0.176 Sum_probs=63.3
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.++.++|+||++||++|+.+.+.|.++.++++ .+.+..|..|. .+ +.+ .+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~-------~~----~l~-~~---------------- 70 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDE-------DK----EKA-EK---------------- 70 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCc-------CH----HHH-HH----------------
Confidence 34678888899999999999999999998873 38888887652 11 222 12
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEE-EecCCCCCchhHHHHHHHHhh
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVI-GRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~-~~~~g~~~~~~~~~~l~~ll~ 168 (170)
+++.+.|++++.+..|..- .++.|..+.+++.+.|+.+++
T Consensus 71 ------------------~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 71 ------------------YGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ------------------cCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHh
Confidence 3677778988886533211 146676677788888888764
No 109
>PTZ00102 disulphide isomerase; Provisional
Probab=99.20 E-value=7.9e-11 Score=94.22 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=77.9
Q ss_pred eecCCCCeeecC-ccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC-CeEEEEeeCCCCCCCCCCCHHHHHHHHHHh
Q 030845 17 VKDSKGKDVDLS-IYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK-GLEILAFPCNQFLKQEPGTSQEAHEFACTR 94 (170)
Q Consensus 17 l~~~~G~~v~l~-~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~ 94 (170)
+....|..+... .-.||++||.||++||++|+.+.|.+.++.+++++. .+.+..+..+. .. . .+ .+
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~-------~~-~---~~-~~ 426 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA-------NE-T---PL-EE 426 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC-------Cc-c---ch-hc
Confidence 445566655432 235799999999999999999999999999998764 46666675441 00 0 01 00
Q ss_pred cCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 95 YKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 95 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
++++.+|+++++++++++..++.|..+.+++.+.|++...
T Consensus 427 ----------------------------------~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 427 ----------------------------------FSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred ----------------------------------CCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 2566779999999988876788998899999999887653
No 110
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.16 E-value=3e-10 Score=89.68 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=66.5
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
+++++||.||++||++|+.+.|.+.++.+++++.++.++.|.+|. ... ..+..+
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~-------~~~---~~~~~~---------------- 423 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG-------DQK---EFAKQE---------------- 423 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC-------Ccc---HHHHHH----------------
Confidence 678999999999999999999999999999987778999998762 111 122112
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecC-CCCCchhHHHHHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYS-PTTSPMAIEGDIKNA 166 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~-g~~~~~~~~~~l~~l 166 (170)
++|..+|+++++.+++.-...|. |..+.+.+...|+.+
T Consensus 424 ------------------~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 424 ------------------LQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ------------------cCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 24556688777765543333454 466788888877654
No 111
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.16 E-value=2.5e-10 Score=72.69 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=38.3
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhcc-CCeEEEEeeCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKH-KGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d 74 (170)
.+++++|.||++||++|+.+.+.+.++.+.+++ ..+.+..++++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 358999999999999999999999999999987 35788888654
No 112
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.16 E-value=8.7e-10 Score=72.56 Aligned_cols=86 Identities=3% Similarity=-0.038 Sum_probs=53.0
Q ss_pred CccCCcEEEEEEecCCCCCchHhHHH-HH--HHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEE
Q 030845 28 SIYKGKVLLIVNVASKCGFTDSNYSQ-LT--DLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQK 104 (170)
Q Consensus 28 ~~~~gk~~ll~f~~~~C~~C~~~~~~-l~--~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 104 (170)
+.-.+|+++|+|+++||++|+.+-.. +. ++.+.+.+ ++.+|-|..+. .++..+.+. +.
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~-------~~~~~~~~~-~~---------- 71 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREE-------RPDVDKIYM-NA---------- 71 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCc-------CcHHHHHHH-HH----------
Confidence 34478999999999999999877652 22 34444433 36666665431 122212222 11
Q ss_pred eecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCC
Q 030845 105 VRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSP 152 (170)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g 152 (170)
+... +++.+.|+++++|++|++++...+
T Consensus 72 -----------~~~~---------~~~~G~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 72 -----------AQAM---------TGQGGWPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred -----------HHHh---------cCCCCCCEEEEECCCCCEEeeeee
Confidence 0000 255667999999999999987643
No 113
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.15 E-value=8.1e-10 Score=71.76 Aligned_cols=42 Identities=7% Similarity=-0.092 Sum_probs=37.3
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
.+++++|.||++||++|+.+.+.|.++.+++++ +.++-|..+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 457999999999999999999999999999864 888888755
No 114
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.14 E-value=4e-10 Score=73.21 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=35.7
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 73 (170)
+++++|.||++||++|+.+.|.|.++.+++++ +.++-|..
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~ 63 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINA 63 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEc
Confidence 58999999999999999999999999999864 77887754
No 115
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.11 E-value=1e-09 Score=67.70 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCCC
Q 030845 33 KVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNA 112 (170)
Q Consensus 33 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (170)
++++|.||++||+.|....+.+.++.++ ..++.++.++.+. .. .++ .+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~-------~~----~~~-~~------------------ 58 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE-------NP----ELA-EE------------------ 58 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC-------Ch----hHH-Hh------------------
Confidence 8999999999999999999999999988 3458888887652 11 122 12
Q ss_pred chHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 113 EPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
+++...|+++++ ++|+++..+.|..+.+++.+.|
T Consensus 59 ----------------~~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 59 ----------------YGVRSIPTFLFF-KNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred ----------------cCcccccEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence 245556887777 5777888888876666665554
No 116
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.10 E-value=1.5e-09 Score=70.62 Aligned_cols=97 Identities=11% Similarity=0.112 Sum_probs=67.2
Q ss_pred CccCCcEEEEEEecCCCCCchHhHHH-H--HHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEE
Q 030845 28 SIYKGKVLLIVNVASKCGFTDSNYSQ-L--TDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQK 104 (170)
Q Consensus 28 ~~~~gk~~ll~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 104 (170)
+.-++|+++|+|+++||++|..+... | .++.+.+.+ ....+.+..+ + .+..+++ ..
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~~---------- 71 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-QS---------- 71 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-HH----------
Confidence 44468999999999999999876543 2 123333332 3555555432 1 2233444 22
Q ss_pred eecCCCCCchHHHHHhhhcCCccCcccccCceEEEECC-CCcEEEecCCCCCchhHHHHHHHHhhc
Q 030845 105 VRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDT-EGNVIGRYSPTTSPMAIEGDIKNALGD 169 (170)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~ll~~ 169 (170)
+++...|+++++|+ +|+++.+..|..+++++...|++.+..
T Consensus 72 ------------------------~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 72 ------------------------YKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred ------------------------hCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 24555689999999 899999999999999999999887653
No 117
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.08 E-value=1.2e-09 Score=70.99 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=36.1
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccC--CeEEEEeeCC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK--GLEILAFPCN 74 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d 74 (170)
+++++|.||++||++|+.+.+.+.++.+++++. .+.+..|+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 479999999999999999999999999998753 3677777543
No 118
>PLN02309 5'-adenylylsulfate reductase
Probab=99.07 E-value=1.5e-09 Score=85.75 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
+++++||.||++||++|+.+.+.+.++.++++..++.++.|++|. .. ...++++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~~---~~la~~~---------------- 417 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------DQ---KEFAKQE---------------- 417 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------cc---hHHHHhh----------------
Confidence 578999999999999999999999999999987789999997652 11 1223112
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecC-CCCCchhHHHHHHHH
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYS-PTTSPMAIEGDIKNA 166 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~-g~~~~~~~~~~l~~l 166 (170)
++|...|+++++.+...-...|. +..+.+.|..+|+.+
T Consensus 418 ------------------~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 418 ------------------LQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ------------------CCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 25666688888865543333454 356778888888765
No 119
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.06 E-value=6.9e-10 Score=72.36 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=38.9
Q ss_pred CCcEEEEEEec-------CCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 31 KGKVLLIVNVA-------SKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+|++++|.||| +||++|+.+.|.|+++.+++++ ++.++.|.+|
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd 69 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVG 69 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcC
Confidence 57999999999 9999999999999999999974 3889999876
No 120
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.04 E-value=1.8e-09 Score=75.38 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=36.3
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
++++||+||++||++|..+.+.|.++.+++.. +.++-|..+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence 35999999999999999999999999999864 888888654
No 121
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.7e-09 Score=77.57 Aligned_cols=92 Identities=23% Similarity=0.245 Sum_probs=69.1
Q ss_pred cCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEee
Q 030845 27 LSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVR 106 (170)
Q Consensus 27 l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 106 (170)
++.-.+|.++|.|+|+||++|+...|.++++..+|+. ..++-|. .++.+..+. .
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVd-----------Vd~c~~taa-~------------ 69 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVD-----------VDECRGTAA-T------------ 69 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEe-----------HHHhhchhh-h------------
Confidence 4444569999999999999999999999999999955 7888884 334444431 2
Q ss_pred cCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 107 VNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
++|...|| |++-.+|+-+.++.|. ++..|++.+.+.+.
T Consensus 70 ----------------------~gV~amPT-Fiff~ng~kid~~qGA-d~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 70 ----------------------NGVNAMPT-FIFFRNGVKIDQIQGA-DASGLEEKVAKYAS 107 (288)
T ss_pred ----------------------cCcccCce-EEEEecCeEeeeecCC-CHHHHHHHHHHHhc
Confidence 36777788 5555888888888775 66678888777653
No 122
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=99.01 E-value=2.3e-09 Score=76.90 Aligned_cols=142 Identities=10% Similarity=0.104 Sum_probs=96.6
Q ss_pred CCCCCcccceEeecCCCCe-eecCccC--CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCC------
Q 030845 6 SVPQKSIYEFTVKDSKGKD-VDLSIYK--GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQF------ 76 (170)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~-v~l~~~~--gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~------ 76 (170)
...|..+|+.++.+.+|+. .++.|+. ++|.||+|.+-.||+-...+..++++.++|.+. ++++.|-+...
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW 151 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGW 151 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCc
Confidence 4678999999999999999 8999983 599999999889999999999999999999985 45554433320
Q ss_pred -------CCCCCCCHHHH---HHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcE
Q 030845 77 -------LKQEPGTSQEA---HEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNV 146 (170)
Q Consensus 77 -------~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i 146 (170)
.-..+-+.++. ++.++ +....+|++.|.. .+.....|+. .+ -.+||| .+|+|
T Consensus 152 ~~~~~~~~i~qh~sledR~~aA~~l~-~~~~~~pi~vD~m--dN~~~~~YgA------------~P--eRlyIi-~~gkv 213 (237)
T PF00837_consen 152 AFGNNPYEIPQHRSLEDRLRAAKLLK-EEFPQCPIVVDTM--DNNFNKAYGA------------LP--ERLYII-QDGKV 213 (237)
T ss_pred cCCCCceeecCCCCHHHHHHHHHHHH-hhCCCCCEEEEcc--CCHHHHHhCC------------Cc--ceEEEE-ECCEE
Confidence 00111223322 23332 3457889887632 3444444432 11 256777 59999
Q ss_pred EEec-CC--CCCchhHHHHHHHH
Q 030845 147 IGRY-SP--TTSPMAIEGDIKNA 166 (170)
Q Consensus 147 ~~~~-~g--~~~~~~~~~~l~~l 166 (170)
++.. .| ...+++++++|++.
T Consensus 214 ~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 214 VYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred EEeCCCCCCcCCHHHHHHHHHhc
Confidence 9885 23 33567888887763
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.99 E-value=2.9e-09 Score=84.73 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCC--eEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKG--LEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVN 108 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 108 (170)
++++++|.||++||++|+...|.+.++.+.+++.+ +.++.|.++. . .+.+ .+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~-------------- 70 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------E----KDLA-QK-------------- 70 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------c----HHHH-Hh--------------
Confidence 56899999999999999999999999999887654 8888887652 1 1233 22
Q ss_pred CCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcE-EEecCCCCCchhHHHHHHHHhh
Q 030845 109 GPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNV-IGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
++|...|+++++ ++|+. +..+.|..+.+.+.+.+.+.+.
T Consensus 71 --------------------~~i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 71 --------------------YGVSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred --------------------CCCccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 256666877777 56666 6778888888888888887653
No 124
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.97 E-value=7.6e-09 Score=62.35 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=30.3
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEe
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAF 71 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~v 71 (170)
.|.||++|||+|....+.++++.+++... +.++-|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v 36 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKV 36 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe
Confidence 37899999999999999999999998754 777666
No 125
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.97 E-value=6.4e-09 Score=73.57 Aligned_cols=40 Identities=8% Similarity=0.084 Sum_probs=35.9
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 73 (170)
++++||+||++||++|..+.+.|.++..+|.. +.++-|..
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~a 141 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIS 141 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEh
Confidence 46999999999999999999999999999964 88888864
No 126
>PTZ00062 glutaredoxin; Provisional
Probab=98.97 E-value=4.7e-09 Score=74.68 Aligned_cols=77 Identities=10% Similarity=-0.029 Sum_probs=60.4
Q ss_pred cEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCCC
Q 030845 33 KVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNA 112 (170)
Q Consensus 33 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (170)
..++++|||+|||+|+.+.+.|.++.+++++ +.++.|.. + |
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~--------d----------------~------------- 58 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNL--------A----------------D------------- 58 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEcc--------c----------------c-------------
Confidence 5678999999999999999999999999965 88888831 1 0
Q ss_pred chHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 113 EPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
+|..+|+++++ ++|+++.+..|. ++.++...+.++.
T Consensus 59 -----------------~V~~vPtfv~~-~~g~~i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 59 -----------------ANNEYGVFEFY-QNSQLINSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred -----------------CcccceEEEEE-ECCEEEeeeeCC-CHHHHHHHHHHHc
Confidence 45666886666 799999999875 5667777776543
No 127
>PTZ00102 disulphide isomerase; Provisional
Probab=98.95 E-value=3e-09 Score=85.19 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=67.9
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC--CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK--GLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVN 108 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 108 (170)
+++.++|.||++||++|+...|.+.++.+.+++. ++.+..|.++. . .+.+ .+
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-------~----~~l~-~~-------------- 101 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-------E----MELA-QE-------------- 101 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-------C----HHHH-Hh--------------
Confidence 5789999999999999999999999998888654 47777776542 1 1233 22
Q ss_pred CCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 109 GPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
+++..+|++++++..+.+ ++.|..+.+.+.+.+++++.
T Consensus 102 --------------------~~i~~~Pt~~~~~~g~~~--~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 102 --------------------FGVRGYPTIKFFNKGNPV--NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred --------------------cCCCcccEEEEEECCceE--EecCCCCHHHHHHHHHHhhC
Confidence 256667898888766544 78888888999999888754
No 128
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.92 E-value=1.4e-08 Score=64.51 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=37.6
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 73 (170)
|+++++.|+++||++|....+.+.++.++++++ +.++.|..
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~ 52 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDA 52 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEch
Confidence 789999999999999999999999999999865 88888854
No 129
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.90 E-value=1.3e-08 Score=73.45 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=62.6
Q ss_pred cCCcEEEEEEec---CCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEee
Q 030845 30 YKGKVLLIVNVA---SKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVR 106 (170)
Q Consensus 30 ~~gk~~ll~f~~---~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 106 (170)
.++...++.|.+ +||++|+.+.|.++++.+++.+ +.+..+.+|. + +..+.+ .+
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~------~---~~~~l~-~~------------ 72 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT------P---EDKEEA-EK------------ 72 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC------c---ccHHHH-HH------------
Confidence 455555666777 9999999999999999999853 5555554441 1 112222 22
Q ss_pred cCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEE-EecCCCCCchhHHHHHHHHh
Q 030845 107 VNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVI-GRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~-~~~~g~~~~~~~~~~l~~ll 167 (170)
++|..+|++++++ +|+.+ .++.|..+.+++.+.|+.++
T Consensus 73 ----------------------~~V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 73 ----------------------YGVERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred ----------------------cCCCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 3677778877775 56666 48888777788888888775
No 130
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.87 E-value=1.7e-08 Score=72.72 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=70.7
Q ss_pred cCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEee
Q 030845 27 LSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVR 106 (170)
Q Consensus 27 l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 106 (170)
+.+..+++-|++|+.+.|+.|..+.|.|+.+.+++ |+.++.||+|.-.. ..||...
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~------------------~~fp~~~--- 170 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPI------------------PSFPNPR--- 170 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCC------------------cCCCCCC---
Confidence 34556789999999999999999999999999986 69999999984111 1122110
Q ss_pred cCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCC-cEEEecCCCCCchhHHHHH
Q 030845 107 VNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEG-NVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G-~i~~~~~g~~~~~~~~~~l 163 (170)
. -.+.... .+|..+|++||+++++ ++.-...|..+.++|.+.|
T Consensus 171 ~----~~g~~~~----------l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 171 P----DPGQAKR----------LGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred C----CHHHHHH----------cCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 0 0111111 2677889999999988 6666678888888776653
No 131
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.86 E-value=1.3e-08 Score=74.73 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=76.0
Q ss_pred cCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEee
Q 030845 27 LSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVR 106 (170)
Q Consensus 27 l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 106 (170)
++++.+++-|++|+.+.||+|..+.|.|+.+.++| |+.++.||+|.-. -..||...
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~------------------~p~fp~~~--- 200 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL------------------IPGLPNSR--- 200 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC------------------CCCCCCcc---
Confidence 34456789999999999999999999999999986 5999999998411 11122210
Q ss_pred cCCCCCchHHHHHhhhcCCccCcccccCceEEEECCC-CcEEEecCCCCCchhHHHHHHHHhh
Q 030845 107 VNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTE-GNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~-G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
.. .+.... .++..+|++||++++ +++.-...|.++.++|.+.|..++.
T Consensus 201 ~d----~gqa~~----------l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 201 SD----SGQAQH----------LGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred CC----hHHHHh----------cCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 00 000111 267778999999999 6666667999999999998887765
No 132
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.82 E-value=1.9e-08 Score=73.43 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=76.1
Q ss_pred cCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEee
Q 030845 27 LSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVR 106 (170)
Q Consensus 27 l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 106 (170)
++++.+++-|++|+.+.||+|..+.|.|+.+.+++ |+.++.||+|.-. ...||...
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~------------------~p~fp~~~--- 193 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI------------------NPLLPDSR--- 193 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC------------------CCCCCCCc---
Confidence 34456779999999999999999999999999985 6999999998511 11233210
Q ss_pred cCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCC-cEEEecCCCCCchhHHHHHHHHhh
Q 030845 107 VNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEG-NVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G-~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
.... .... .++...|++||++++. ++.-...|.++.++|.+.|..+..
T Consensus 194 ~d~g----qa~~----------l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 194 TDQG----QAQR----------LGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred cChh----HHHh----------cCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 0000 0111 2677789999999985 677777999999999988887654
No 133
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.78 E-value=4.5e-08 Score=77.90 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=67.5
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhcc-C-CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKH-K-GLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVN 108 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~-~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 108 (170)
.++.+||.||++||++|+.+.|.+.++.+.+++ . ++.++.+.++. . + + ..
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~-------n--~----~-~~-------------- 414 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-------N--D----V-PP-------------- 414 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC-------C--c----c-CC--------------
Confidence 479999999999999999999999999999987 2 68888886542 0 0 0 00
Q ss_pred CCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcE-EEecCCCCCchhHHHHHHHHh
Q 030845 109 GPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNV-IGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~ll 167 (170)
+++..+|+++++.+.++. ...+.|..+.+.+.+.|.+..
T Consensus 415 --------------------~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 415 --------------------FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred --------------------CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 145567899999776652 356778778888888887654
No 134
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.71 E-value=2.3e-07 Score=57.58 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=36.4
Q ss_pred cCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeC
Q 030845 27 LSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 27 l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 73 (170)
+.++++.+.+..|+++||++|+...+.++++.+++.+ +.+.-+..
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~ 51 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDG 51 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEh
Confidence 3456778888999999999999999999999988754 66666643
No 135
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.69 E-value=2.8e-08 Score=65.62 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.3
Q ss_pred cCCcEEEEEEecCCCCCchHhHHHH
Q 030845 30 YKGKVLLIVNVASKCGFTDSNYSQL 54 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~~~l 54 (170)
-.+|+++|+|++.||++|+.+-...
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 4689999999999999998776543
No 136
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.68 E-value=1.3e-07 Score=62.73 Aligned_cols=90 Identities=17% Similarity=0.265 Sum_probs=49.6
Q ss_pred CccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeec
Q 030845 28 SIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRV 107 (170)
Q Consensus 28 ~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (170)
+....+..++.|..+|||.|...+|.|.++.+..+. +.+--++ .++-.+.. ++ |..
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~-----------rd~~~el~-~~----~lt------ 92 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIIL-----------RDENKELM-DQ----YLT------ 92 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE------------HHHHHHHT-TT----TTT------
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEE-----------ecCChhHH-HH----HHh------
Confidence 344567889999999999999999999999998764 4444442 22222322 11 100
Q ss_pred CCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHH
Q 030845 108 NGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIK 164 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 164 (170)
.+...+|+++++|.+|+.++++.+ .|+.+.+.+.
T Consensus 93 ---------------------~g~~~IP~~I~~d~~~~~lg~wge--rP~~~~~~~~ 126 (129)
T PF14595_consen 93 ---------------------NGGRSIPTFIFLDKDGKELGRWGE--RPKEVQELVD 126 (129)
T ss_dssp ----------------------SS--SSEEEEE-TT--EEEEEES--S-HHHH----
T ss_pred ---------------------CCCeecCEEEEEcCCCCEeEEEcC--CCHHHhhccc
Confidence 256668999999999999999865 4665555443
No 137
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.67 E-value=2.5e-07 Score=66.77 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=30.7
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 73 (170)
.+.+.++.||++||++|+...+.++++..+.. ++.+.-+..
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~ 172 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEA 172 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeC
Confidence 44456666999999999999998888887753 366666643
No 138
>PHA02125 thioredoxin-like protein
Probab=98.58 E-value=7e-07 Score=53.55 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=19.4
Q ss_pred EEEEecCCCCCchHhHHHHHHH
Q 030845 36 LIVNVASKCGFTDSNYSQLTDL 57 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~ 57 (170)
++.|+++||++|+...+.|.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 6889999999999999988754
No 139
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2e-07 Score=73.78 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=66.5
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC--CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK--GLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVN 108 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 108 (170)
....+||.|||+||++|++..|.+.+....+++. .+.+.-|-. .++ ...+ .+|
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa----------t~~-~~~~-~~y------------- 95 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA----------TEE-SDLA-SKY------------- 95 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec----------chh-hhhH-hhh-------------
Confidence 4478999999999999999999999999999987 566666632 122 5555 343
Q ss_pred CCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 109 GPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
.|+..||+ -|-++|.....|.|....+.+..++.+.
T Consensus 96 ---------------------~v~gyPTl-kiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 96 ---------------------EVRGYPTL-KIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred ---------------------cCCCCCeE-EEEecCCcceeccCcccHHHHHHHHHhc
Confidence 45555664 4458888777788888888888888754
No 140
>smart00594 UAS UAS domain.
Probab=98.50 E-value=9.6e-07 Score=58.07 Aligned_cols=91 Identities=10% Similarity=0.055 Sum_probs=59.0
Q ss_pred CccCCcEEEEEEecCCCCCchHhHHHH-H--HHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEE
Q 030845 28 SIYKGKVLLIVNVASKCGFTDSNYSQL-T--DLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQK 104 (170)
Q Consensus 28 ~~~~gk~~ll~f~~~~C~~C~~~~~~l-~--~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 104 (170)
+.-.+|+++|+|++.||+.|....... . ++.+.+.+ ++.++.+..+ +. +..+++ ..
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~-eg~~l~-~~---------- 81 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TS-EGQRVS-QF---------- 81 (122)
T ss_pred HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------Ch-hHHHHH-Hh----------
Confidence 334689999999999999998766532 1 12223322 4555555433 12 223343 22
Q ss_pred eecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCC-----cEEEecCCCCCchhHHHHH
Q 030845 105 VRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEG-----NVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G-----~i~~~~~g~~~~~~~~~~l 163 (170)
+++...|++.+++++| .++.+..|..+++++...|
T Consensus 82 ------------------------~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 82 ------------------------YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ------------------------cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 2455568899999998 5777888988888877665
No 141
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.50 E-value=1.6e-06 Score=50.68 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=30.3
Q ss_pred EEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 35 LLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 35 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
-+..|+++|||+|+...+.|+++.+... ++.+..+..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 3677999999999999999999977643 4777777654
No 142
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.45 E-value=6.3e-07 Score=57.21 Aligned_cols=49 Identities=27% Similarity=0.345 Sum_probs=41.1
Q ss_pred eecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 25 VDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 25 v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
......+++++++.||++||++|....+.+.++.+++.. .+.++.+...
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344444589999999999999999999999999999986 5888888753
No 143
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.37 E-value=6.3e-06 Score=59.11 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=77.6
Q ss_pred cccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCC---eEEEEeeCCCCCCCCCCCHHHH
Q 030845 11 SIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKG---LEILAFPCNQFLKQEPGTSQEA 87 (170)
Q Consensus 11 ~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~---v~vi~vs~d~~~~~~~~~~~~~ 87 (170)
+.|.+++.+. -...+..|+++||-+--.+|..|..+...|..|+.++.+.| |.++.|+- ++. ....+
T Consensus 9 ~~p~W~i~~~----~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~-----~~~-~s~~~ 78 (238)
T PF04592_consen 9 PPPPWKIGGQ----DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH-----QGE-HSRLK 78 (238)
T ss_pred CCCCceECCc----hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC-----CCc-chhHH
Confidence 4566665443 25677899999999998899999999999999999998764 56666652 111 22223
Q ss_pred HHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEec
Q 030845 88 HEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRY 150 (170)
Q Consensus 88 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~ 150 (170)
...++.+....+|++. .......+|..+....+ -+||+|+.|++.+..
T Consensus 79 ~~~l~~r~~~~ipVyq----q~~~q~dvW~~L~G~kd-----------D~~iyDRCGrL~~~i 126 (238)
T PF04592_consen 79 YWELKRRVSEHIPVYQ----QDENQPDVWELLNGSKD-----------DFLIYDRCGRLTYHI 126 (238)
T ss_pred HHHHHHhCCCCCceec----CCccccCHHHHhCCCcC-----------cEEEEeccCcEEEEe
Confidence 2333333344588773 11234557877764432 358999999999875
No 144
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.31 E-value=2.7e-06 Score=51.87 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=32.3
Q ss_pred cCCcEEEEEEecCCCCCchHhHHHH---HHHHHHhccCCeEEEEeeCC
Q 030845 30 YKGKVLLIVNVASKCGFTDSNYSQL---TDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vi~vs~d 74 (170)
-.||+++|+|+++||+.|..+-..+ .++.+.+. +++..+-|..+
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcC
Confidence 3689999999999999999877666 33444344 34777777654
No 145
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.28 E-value=6e-06 Score=46.63 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=32.0
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQ 75 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 75 (170)
|+.||++||+.|....+.+.++ +..+.++.++.++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence 4789999999999999999999 4445579999998763
No 146
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.25 E-value=2.9e-06 Score=68.18 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=69.2
Q ss_pred cCCcEEEEEEecCCCCCchHhHHH-HHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecC
Q 030845 30 YKGKVLLIVNVASKCGFTDSNYSQ-LTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVN 108 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~~~-l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 108 (170)
.++|+++|+|+|+||-.|+..-+. +++.+...+-.|+..+-+.... +..+..+..+ ++
T Consensus 472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~-------~~p~~~~lLk-~~------------- 530 (569)
T COG4232 472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA-------NDPAITALLK-RL------------- 530 (569)
T ss_pred CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC-------CCHHHHHHHH-Hc-------------
Confidence 355699999999999999876554 4466666666678888876543 3455556663 43
Q ss_pred CCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 109 GPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
++-..|+.++++++|+-.....|.++.+.+.+.+++.
T Consensus 531 ---------------------~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 531 ---------------------GVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred ---------------------CCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 3444578899999998777678888888888888764
No 147
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.7e-05 Score=62.15 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=60.8
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+++.+|.||++||++|.+..+...++.+.+++. +.+..|. ...-...+ +++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd-----------~~~~~~~~-~~y--------------- 97 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVD-----------CDEHKDLC-EKY--------------- 97 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeC-----------chhhHHHH-Hhc---------------
Confidence 4689999999999999999999999999999873 6677763 33444444 343
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
+|.+.|+..++.+. .-...+.|..+.+.+...+...+
T Consensus 98 -------------------~i~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~ 134 (383)
T KOG0191|consen 98 -------------------GIQGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKEL 134 (383)
T ss_pred -------------------CCccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhh
Confidence 45555676666666 32334555555666666655544
No 148
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.17 E-value=0.00024 Score=48.18 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=82.3
Q ss_pred CCCCcccceEeecC----------CCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHH-hccCCeEEEEeeCCC
Q 030845 7 VPQKSIYEFTVKDS----------KGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNK-YKHKGLEILAFPCNQ 75 (170)
Q Consensus 7 ~~~~~~p~f~l~~~----------~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~-~~~~~v~vi~vs~d~ 75 (170)
..+.++|..++.+. ..++++.+.+.||+-+|.+.|----.-...-|-+..+.+. |+...++..+|-.-.
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 34667777776552 3455666778899999977754333333333444445444 555556666653221
Q ss_pred CCCCCCCCHHHHHHHHHHhcC--CCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCC
Q 030845 76 FLKQEPGTSQEAHEFACTRYK--AEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPT 153 (170)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~ 153 (170)
+--..+---++..+. ... .++..+. .|.+|. ....|+.-. ..-.++++|++|+|++...|.
T Consensus 82 --DAi~gt~~fVrss~e-~~kk~~p~s~~v-lD~~G~-~~~aW~L~~------------~~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 82 --DAIWGTGGFVRSSAE-DSKKEFPWSQFV-LDSNGV-VRKAWQLQE------------ESSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred --cccccchHHHHHHHH-HhhhhCCCcEEE-EcCCCc-eeccccCCC------------CCceEEEEcCCccEEEEECCC
Confidence 111123345556553 333 3444221 355554 344453311 113678999999999999999
Q ss_pred CCchhHHHHHHH
Q 030845 154 TSPMAIEGDIKN 165 (170)
Q Consensus 154 ~~~~~~~~~l~~ 165 (170)
++++++.+.|.-
T Consensus 145 Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 145 LSPAEVQQVIAL 156 (160)
T ss_pred CCHHHHHHHHHH
Confidence 999998887763
No 149
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.14 E-value=2.6e-05 Score=45.86 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=24.0
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+..|+++|||+|....+.|.+ .++.+..++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~ 33 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE 33 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence 456889999999987776654 45777777665
No 150
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.3e-05 Score=52.32 Aligned_cols=130 Identities=20% Similarity=0.231 Sum_probs=79.5
Q ss_pred CCCCCcccceEeecCCCC-------eeecCc-cCCcEEEE-EEecCCCCCchH-hHHHHHHHHHHhccCCe-EEEEeeCC
Q 030845 6 SVPQKSIYEFTVKDSKGK-------DVDLSI-YKGKVLLI-VNVASKCGFTDS-NYSQLTDLYNKYKHKGL-EILAFPCN 74 (170)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~-------~v~l~~-~~gk~~ll-~f~~~~C~~C~~-~~~~l~~~~~~~~~~~v-~vi~vs~d 74 (170)
...|.++|..++....+. .++..+ ++||.++| ..-+.+.|.|.. ++|...+++++++++|| .|+.||+|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 357888999888775222 244444 47765555 345889999996 99999999999999998 67777776
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCC--CceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEec
Q 030845 75 QFLKQEPGTSQEAHEFACTRYKAE--YPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRY 150 (170)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~ 150 (170)
+.-.+..|.+ ..+.. ..++. |..+.-.+. +.++-.... +|.+++.-....|+ .||.+....
T Consensus 83 --------D~FVm~AWak-~~g~~~~I~fi~--Dg~geFTk~-~Gm~~d~~~--~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 83 --------DAFVMNAWAK-SQGGEGNIKFIP--DGNGEFTKA-MGMLVDKSD--LGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred --------cHHHHHHHHH-hcCCCccEEEec--CCCchhhhh-cCceeeccc--CCcceeeeeEEEEE-eCCeEEEEE
Confidence 5778888885 44443 44454 333332221 112111111 22234333344455 678776654
No 151
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.10 E-value=2.8e-05 Score=50.46 Aligned_cols=42 Identities=14% Similarity=0.046 Sum_probs=30.4
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC--CeEEEEeeCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK--GLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d 74 (170)
+.+.+||.|+|+| |.|.+ +|+.+++..++... .+.+.-|.++
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~ 60 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIK 60 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecc
Confidence 4589999999966 55655 58888888887432 3777777664
No 152
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.09 E-value=6.2e-05 Score=48.99 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=64.1
Q ss_pred CccCCcEEEEEEecC----CCCCchHhH--HHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCce
Q 030845 28 SIYKGKVLLIVNVAS----KCGFTDSNY--SQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPI 101 (170)
Q Consensus 28 ~~~~gk~~ll~f~~~----~C~~C~~~~--~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (170)
+.-.+|+++|+++++ ||..|+..+ +.+.++.+ .++.+++.++. ..+..+.+ ...
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~---------~~eg~~la-~~l------ 72 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVA---------KPEGYRVS-QAL------ 72 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecC---------ChHHHHHH-HHh------
Confidence 345689999999988 667786555 45555554 24666666553 12223333 121
Q ss_pred eEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEE---CCCCcEEEecCCCCCchhHHHHHHHHhhc
Q 030845 102 FQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLV---DTEGNVIGRYSPTTSPMAIEGDIKNALGD 169 (170)
Q Consensus 102 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~li---d~~G~i~~~~~g~~~~~~~~~~l~~ll~~ 169 (170)
++...|.+.++ +.+.+++.+..|..+++++...|+.++++
T Consensus 73 ----------------------------~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 73 ----------------------------RERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred ----------------------------CCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 34445677777 66777899999999999999999988764
No 153
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.95 E-value=0.00027 Score=52.14 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=74.8
Q ss_pred CCCcccceEeecCCCCeeecCc-cCCcEEEEEEecC-CCCCchHhH--HHHHHHHHHhccCCeEEEEeeCCCCCCCCCCC
Q 030845 8 PQKSIYEFTVKDSKGKDVDLSI-YKGKVLLIVNVAS-KCGFTDSNY--SQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 83 (170)
Q Consensus 8 ~~~~~p~f~l~~~~G~~v~l~~-~~gk~~ll~f~~~-~C~~C~~~~--~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 83 (170)
...-+|+|...+++|+.+++.+ ++||+.||..+++ |-..|...- |.++++... +...++++-|++-
T Consensus 97 kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~-~~~~~q~v~In~~--------- 166 (252)
T PF05176_consen 97 KALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQE-PYGRVQIVEINLI--------- 166 (252)
T ss_pred hCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhC-CCCceEEEEEecc---------
Confidence 3446899999999999998877 5899999888755 443343322 223333222 2116999999864
Q ss_pred HHHHHHHHHH----h--cCCC---CceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCC
Q 030845 84 SQEAHEFACT----R--YKAE---YPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTT 154 (170)
Q Consensus 84 ~~~~~~~~~~----~--~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~ 154 (170)
..-++.++.. . ..++ +..+.... .+.....+-+.+. ..=.....+||||.+|+|||...|..
T Consensus 167 e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~-~~~~~~~iRe~Lg--------i~N~~~GYvyLVD~~grIRWagsG~A 237 (252)
T PF05176_consen 167 ENWLKSWLVKLFMGSLRKSIPEERHDRYFIVY-RGQLSDDIREALG--------INNSYVGYVYLVDPNGRIRWAGSGPA 237 (252)
T ss_pred hHHHHHHHHHHHhhhhhccCCHHHCceEEEEe-CCcccHHHHHHhC--------CCCCCcCeEEEECCCCeEEeCccCCC
Confidence 2223333321 1 0111 11111111 1111111111111 11222347899999999999999988
Q ss_pred CchhHHH
Q 030845 155 SPMAIEG 161 (170)
Q Consensus 155 ~~~~~~~ 161 (170)
+++++..
T Consensus 238 t~~E~~~ 244 (252)
T PF05176_consen 238 TPEELES 244 (252)
T ss_pred CHHHHHH
Confidence 8887544
No 154
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.88 E-value=4.1e-05 Score=57.02 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=59.0
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccC----CeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeec
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK----GLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRV 107 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~----~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (170)
..+++|.|+|+||+..+...|.+.+..++++++ .+.+-.|.+| ...++..+|.+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd------------~e~~ia~ky~I---------- 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD------------KEDDIADKYHI---------- 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc------------hhhHHhhhhcc----------
Confidence 569999999999999999999999977777643 3444444433 12233234433
Q ss_pred CCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEE-ecCCCCCchhHHHHHHHHh
Q 030845 108 NGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIG-RYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~-~~~g~~~~~~~~~~l~~ll 167 (170)
...||.=|+ ++|.+.. .|.|..+.+.+.+.|++-+
T Consensus 71 ------------------------~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 71 ------------------------NKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred ------------------------ccCceeeee-eccchhhhhhccchhHHHHHHHHHHHh
Confidence 333443333 5787776 4777778888888777654
No 155
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.85 E-value=0.00058 Score=48.55 Aligned_cols=85 Identities=12% Similarity=0.182 Sum_probs=67.2
Q ss_pred cccceEeecCCCCeeecCcc-CCcEEEE--EEe-----cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCC
Q 030845 11 SIYEFTVKDSKGKDVDLSIY-KGKVLLI--VNV-----ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPG 82 (170)
Q Consensus 11 ~~p~f~l~~~~G~~v~l~~~-~gk~~ll--~f~-----~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 82 (170)
.-.+..|...+|+ ++|+++ .||-.|| .|. ..-|+.|...+.++.-....+..+++.++.||- .
T Consensus 45 v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr--------a 115 (211)
T PF05988_consen 45 VDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR--------A 115 (211)
T ss_pred CCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC--------C
Confidence 3344778788888 899995 7764444 343 358999999999998888888888999999984 3
Q ss_pred CHHHHHHHHHHhcCCCCceeEEe
Q 030845 83 TSQEAHEFACTRYKAEYPIFQKV 105 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~d~ 105 (170)
+.+.+..|. ++.|-++|+++..
T Consensus 116 P~~~i~afk-~rmGW~~pw~Ss~ 137 (211)
T PF05988_consen 116 PLEKIEAFK-RRMGWTFPWYSSY 137 (211)
T ss_pred CHHHHHHHH-HhcCCCceEEEcC
Confidence 789999998 5889999999754
No 156
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=3e-05 Score=61.80 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=36.1
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC-CeEEEEe
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK-GLEILAF 71 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vi~v 71 (170)
.+|-+||.|+|+||++|+...|.+++|.++|++. ++.|.-+
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKm 424 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKM 424 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence 5799999999999999999999999999999986 5555554
No 157
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00061 Score=46.04 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=66.5
Q ss_pred CccCCcEEEEEEecCCCCCchHhHHHH---HHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEE
Q 030845 28 SIYKGKVLLIVNVASKCGFTDSNYSQL---TDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQK 104 (170)
Q Consensus 28 ~~~~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 104 (170)
..-.+|..++.|-...|++|...-..+ .++++-+++. +.++.+.... +. |++..
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~-------sk---------------pv~f~ 94 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISY-------SK---------------PVLFK 94 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEecc-------Cc---------------ceEee
Confidence 334689999999999999997654433 3455555443 5555554321 00 11100
Q ss_pred e-ec-CCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHH
Q 030845 105 V-RV-NGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKN 165 (170)
Q Consensus 105 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 165 (170)
. +. .......+.+. ++++.+|++++.|++|+.+...-|-++++++...+.-
T Consensus 95 ~g~kee~~s~~ELa~k----------f~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 95 VGDKEEKMSTEELAQK----------FAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred cCceeeeecHHHHHHH----------hccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 0 00 01111233333 4799999999999999999999999999988776653
No 158
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.75 E-value=0.00031 Score=41.72 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.0
Q ss_pred EEEEecCCCCCchHhHHHHHHH
Q 030845 36 LIVNVASKCGFTDSNYSQLTDL 57 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~ 57 (170)
+..||++|||+|....+.|.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5679999999999988877554
No 159
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00019 Score=48.31 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=65.1
Q ss_pred CCCCCCCcccc--eE-eecC----CCCeeecCcc-CCcEEEEE-EecCCCCC-chHhHHHHHHHHHHhccCCe-EEEEee
Q 030845 4 SESVPQKSIYE--FT-VKDS----KGKDVDLSIY-KGKVLLIV-NVASKCGF-TDSNYSQLTDLYNKYKHKGL-EILAFP 72 (170)
Q Consensus 4 ~~~~~~~~~p~--f~-l~~~----~G~~v~l~~~-~gk~~ll~-f~~~~C~~-C~~~~~~l~~~~~~~~~~~v-~vi~vs 72 (170)
+....|+.+|+ .+ +.+. .|.+++++++ +||-++|+ ..+.+.|. |..++|-+.+-.++++.+|+ +|+.||
T Consensus 7 a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 7 APIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred ccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 45577888888 44 2221 1337888886 78666663 34779998 56899999999999999998 678888
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhcCCC--CceeEE
Q 030845 73 CNQFLKQEPGTSQEAHEFACTRYKAE--YPIFQK 104 (170)
Q Consensus 73 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d 104 (170)
+| ++-.++.|.+ .++.+ -.+++|
T Consensus 87 Vn--------DpFv~~aW~k-~~g~~~~V~f~aD 111 (171)
T KOG0541|consen 87 VN--------DPFVMKAWAK-SLGANDHVKFVAD 111 (171)
T ss_pred cC--------cHHHHHHHHh-hcCccceEEEEec
Confidence 77 5778888884 55553 445554
No 160
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.69 E-value=0.00045 Score=44.73 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=57.5
Q ss_pred HHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHh-------------
Q 030845 54 LTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLK------------- 120 (170)
Q Consensus 54 l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------------- 120 (170)
|.+..+++++.|+.++.|.+. +.+.++.|+ +..+.+++++.|.+. .+|+.+.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly~D~~~------~lY~~lg~~~~~~~~~~~~~ 66 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLYVDPER------KLYKALGLKRGLKWSLLPPA 66 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEEEeCcH------HHHHHhCCccccccCCCchH
Confidence 566778888889999999875 566699999 578899999887542 1121111
Q ss_pred -------------hh-cCCcc-CcccccCceEEEECCCCcEEEecC
Q 030845 121 -------------AS-KTGYF-GSRIKWNFTKFLVDTEGNVIGRYS 151 (170)
Q Consensus 121 -------------~~-~~~~~-~~~v~~~p~~~lid~~G~i~~~~~ 151 (170)
.. ..+.. ...+.....+||+|++|++++.|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 67 LWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 11 11112 335666688999999999999874
No 161
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.68 E-value=0.0014 Score=43.43 Aligned_cols=90 Identities=10% Similarity=0.054 Sum_probs=63.3
Q ss_pred cEEEEEEecC--CCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 33 KVLLIVNVAS--KCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 33 k~~ll~f~~~--~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
...+|.|.+. -+|-+....-.|.++.++|.+..+.++-|..|. . .+.+ .+
T Consensus 35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--------~---~~LA-~~---------------- 86 (132)
T PRK11509 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--------S---EAIG-DR---------------- 86 (132)
T ss_pred CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--------C---HHHH-HH----------------
Confidence 3455545433 566677777888888888865448888887652 1 1222 22
Q ss_pred CCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhhc
Q 030845 111 NAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALGD 169 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~~ 169 (170)
++|..+|+++++ ++|+++.+..|..+.+++.+.|++++.+
T Consensus 87 ------------------fgV~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 87 ------------------FGVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred ------------------cCCccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 367777885555 9999999999988889999999998864
No 162
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.65 E-value=0.0002 Score=43.38 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=32.4
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFAC 92 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 92 (170)
++.|+++|||+|....+.|.++. .+. .+.++-|+.+. ..++.++++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~-------~~~~~~~~l~ 47 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLS-------NGSEIQDYLE 47 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCC-------ChHHHHHHHH
Confidence 45688999999999999998875 222 37777776442 3455555553
No 163
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.56 E-value=0.00071 Score=40.49 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=23.8
Q ss_pred ecCCCCCchHhHHHHHHHHHHhccCCeEEEEe
Q 030845 40 VASKCGFTDSNYSQLTDLYNKYKHKGLEILAF 71 (170)
Q Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~v 71 (170)
++++||.|+.....++++.++++ ..++++-+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~ 36 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG-IEVEIIDI 36 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT-EEEEEEET
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEc
Confidence 56779999999999999988874 33555554
No 164
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.56 E-value=0.0011 Score=49.07 Aligned_cols=130 Identities=9% Similarity=0.102 Sum_probs=64.2
Q ss_pred cCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHh--------cCCC
Q 030845 27 LSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTR--------YKAE 98 (170)
Q Consensus 27 l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~--------~~~~ 98 (170)
...-.+|.+|+.|.-..||+|++....+.++.+. . ++.+.-+.... ..+++....+..+... +...
T Consensus 112 ~g~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip~~~---l~~~S~~~a~ailca~d~~~a~~~~~~~ 185 (251)
T PRK11657 112 DGKADAPRIVYVFADPNCPYCKQFWQQARPWVDS-G--KVQLRHILVGI---IKPDSPGKAAAILAAKDPAKALQEYEAS 185 (251)
T ss_pred ccCCCCCeEEEEEECCCChhHHHHHHHHHHHhhc-C--ceEEEEEeccc---cCcchHHHHHHHHhccCHHHHHHHHHHh
Confidence 3333568899999999999999999998887654 2 25544443211 1122222222211111 1111
Q ss_pred CceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHH
Q 030845 99 YPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIK 164 (170)
Q Consensus 99 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 164 (170)
+... ...............+..+..-....++..+|++|+.|.+|.+.. ..|..+++++.+.|.
T Consensus 186 ~~~~-~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~-v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 186 GGKL-GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQ-VVGLPDPAQLAEIMG 249 (251)
T ss_pred hhcc-CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEE-ecCCCCHHHHHHHhC
Confidence 1100 000000001111111111111001147889999999999997543 456666777766653
No 165
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.51 E-value=0.0011 Score=45.90 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=34.8
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 73 (170)
.++++|+.|+...||+|....+.+.++.++++. ++.+.-+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcCC
Confidence 678999999999999999999999999999854 365554443
No 166
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.41 E-value=0.0029 Score=46.24 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=32.0
Q ss_pred ecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 26 DLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 26 ~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
....-.|+.+++.|.-..||+|++..+.+.++.+ .++.+..+.
T Consensus 101 ~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~ 143 (232)
T PRK10877 101 VYKAPQEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLA 143 (232)
T ss_pred EecCCCCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEe
Confidence 3333357899999999999999999988877643 456666553
No 167
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0012 Score=51.79 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=35.4
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhcc-CCeEEEEee
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKH-KGLEILAFP 72 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~vi~vs 72 (170)
....++.|+++||++|+...+...++-..++. .++.+..+.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d 203 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKID 203 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeec
Confidence 46788999999999999999999999999874 567887774
No 168
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.0002 Score=57.59 Aligned_cols=60 Identities=17% Similarity=0.341 Sum_probs=45.3
Q ss_pred cEEEEEEecCCCCCchHhHHHHHHHHHHhccC-C-eEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCC-Ccee
Q 030845 33 KVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK-G-LEILAFPCNQFLKQEPGTSQEAHEFACTRYKAE-YPIF 102 (170)
Q Consensus 33 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~-v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (170)
+.-+|.|+++||++|+...|.++++.+.+.+= + +.|.+|.+- .+.....+ .+++++ ||.+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~lC-Ref~V~~~Ptl 120 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKLC-REFSVSGYPTL 120 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhhH-hhcCCCCCcee
Confidence 58899999999999999999999999888752 3 567777663 34455666 466664 6655
No 169
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.33 E-value=0.00077 Score=46.30 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=17.7
Q ss_pred ecCccCCcEEEEEEecCCCCCchHhHH
Q 030845 26 DLSIYKGKVLLIVNVASKCGFTDSNYS 52 (170)
Q Consensus 26 ~l~~~~gk~~ll~f~~~~C~~C~~~~~ 52 (170)
..+.-.+|+++|++.++||..|..+..
T Consensus 31 ~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 31 EKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 334446899999999999999987663
No 170
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.28 E-value=0.00089 Score=50.06 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=29.5
Q ss_pred cEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeE
Q 030845 33 KVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLE 67 (170)
Q Consensus 33 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~ 67 (170)
-..+|.|+|+||.+|++.-|.-.++--++++.|.-
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLP 78 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCc
Confidence 58899999999999999999888887777766543
No 171
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.25 E-value=0.008 Score=39.19 Aligned_cols=105 Identities=12% Similarity=0.221 Sum_probs=63.9
Q ss_pred cCccCC--cEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCC-CCCHHHHHHHHHHhcCCCCcee
Q 030845 27 LSIYKG--KVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQE-PGTSQEAHEFACTRYKAEYPIF 102 (170)
Q Consensus 27 l~~~~g--k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 102 (170)
|+++++ +++|| |- ...-+.-..++..|.+-...+.++++.++.+.-+...... .-+........ ..++++
T Consensus 3 L~~~~w~~R~lvv-~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~---- 76 (118)
T PF13778_consen 3 LDQFRWKNRLLVV-FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIP---- 76 (118)
T ss_pred hhHhcCcCceEEE-ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCC----
Confidence 455555 34444 33 3355557788889999888999999999988543211100 01112222222 232221
Q ss_pred EEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 103 QKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 103 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
+...+.+||++||.+..++....+++++-+.|+..
T Consensus 77 -----------------------------~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 77 -----------------------------PGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred -----------------------------CCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 01136799999999999988888888887777653
No 172
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.0019 Score=46.08 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=61.9
Q ss_pred EeecCCCCeeecCcc-CCcEEEE--EE-----ecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHH
Q 030845 16 TVKDSKGKDVDLSIY-KGKVLLI--VN-----VASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEA 87 (170)
Q Consensus 16 ~l~~~~G~~v~l~~~-~gk~~ll--~f-----~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 87 (170)
.+.+.+|+ .+|+++ .||-.|| .| |..-||.|...+.++.-....+...++.++.|| +-+.+++
T Consensus 56 ~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~Vs--------RAPl~~l 126 (247)
T COG4312 56 VFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVS--------RAPLEEL 126 (247)
T ss_pred EeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEe--------cCcHHHH
Confidence 34456775 688886 6764444 34 233699999999999888888888899999998 3468899
Q ss_pred HHHHHHhcCCCCceeEEeec
Q 030845 88 HEFACTRYKAEYPIFQKVRV 107 (170)
Q Consensus 88 ~~~~~~~~~~~~~~~~d~~~ 107 (170)
..|- .+.|-.||+++..+.
T Consensus 127 ~~~k-~rmGW~f~w~Ss~~s 145 (247)
T COG4312 127 VAYK-RRMGWQFPWVSSTDS 145 (247)
T ss_pred HHHH-HhcCCcceeEeccCc
Confidence 8887 588889999976544
No 173
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.21 E-value=0.00091 Score=43.59 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCcEEEEEEec-------CCCCCchHhHHHHHHHHHHhccCCeEEEEeeC
Q 030845 31 KGKVLLIVNVA-------SKCGFTDSNYSQLTDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~ll~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 73 (170)
.++++.|.|.+ +|||.|....|.+++..+..++ +..+|.|.+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~V 66 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEV 66 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE-
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 46778888874 3999999999999999998554 588877754
No 174
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.17 E-value=0.00068 Score=48.21 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=26.0
Q ss_pred eecCccCCcEEEEEEecCCCCCchHhHHHHHH
Q 030845 25 VDLSIYKGKVLLIVNVASKCGFTDSNYSQLTD 56 (170)
Q Consensus 25 v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~ 56 (170)
+.+..-.++..++.|....||+|.+..+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 33433357899999999999999999998877
No 175
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.91 E-value=0.0022 Score=43.20 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=33.1
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
.++++|+.|+..+||+|....+.+.++..++++..+.+..++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 468999999999999999999999999888765334444443
No 176
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.76 E-value=0.013 Score=35.61 Aligned_cols=37 Identities=5% Similarity=0.085 Sum_probs=28.7
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+..|..+|||.|.+....|+++..++. ++.+.-++++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIH 39 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECC
Confidence 556889999999999999999988764 4555555544
No 177
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.68 E-value=0.0055 Score=41.73 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=39.4
Q ss_pred eeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhc-cCCeEEEEeeCC
Q 030845 24 DVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYK-HKGLEILAFPCN 74 (170)
Q Consensus 24 ~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~vi~vs~d 74 (170)
.+.+.+-.++++|+.|+...||+|....+.+.++.+++- +..+.++.+.+.
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 345666678999999999999999999999999999982 224777777653
No 178
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.51 E-value=0.021 Score=47.11 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=28.3
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEe
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAF 71 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~v 71 (170)
++..+-.|..++||+|+.....++++..+.++-..+++-+
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~ 515 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDV 515 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEEC
Confidence 3444556679999999998888888888876433344443
No 179
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.51 E-value=0.02 Score=33.11 Aligned_cols=32 Identities=13% Similarity=0.350 Sum_probs=22.0
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
++.|.++|||+|......|.+ .++.+..+.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 455788999999886666554 34666666554
No 180
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.014 Score=37.78 Aligned_cols=43 Identities=9% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCcEEEEEEec--------CCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 31 KGKVLLIVNVA--------SKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~--------~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+|+-+.+.|.+ +|||.|....|.+.+..+...+ ++.+|-|-+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEec
Confidence 56667777764 5899999999999999886554 4888888654
No 181
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.24 E-value=0.019 Score=34.37 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=24.4
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
++.|..+|||.|......|.++.. .+.++-+..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence 355778999999888888887644 2566666544
No 182
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.94 E-value=0.041 Score=33.60 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=25.5
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
++.|..+|||+|......|.++..++. ++.+.-+.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 455778899999988888888765443 3555555443
No 183
>PHA03050 glutaredoxin; Provisional
Probab=95.92 E-value=0.032 Score=35.79 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=23.3
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
++.|..+|||+|.+....|.+.--+.+ .++++-|.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~--~~~~i~i~ 49 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG--AYEIVDIK 49 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC--CcEEEECC
Confidence 455889999999887777766533221 25666664
No 184
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.87 E-value=0.062 Score=31.52 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=22.1
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+..|..++||.|......|++ .++.+-.+.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~ 33 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD 33 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence 345778999999887777765 34555556554
No 185
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.76 E-value=0.037 Score=31.17 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=21.7
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
++.|..++||+|......|.+ .|+.+-.+.++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cCCeeeEcccc
Confidence 456888999999877776632 34655555554
No 186
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.69 E-value=0.049 Score=32.47 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=16.0
Q ss_pred EEEecCCCCCchHhHHHHHH
Q 030845 37 IVNVASKCGFTDSNYSQLTD 56 (170)
Q Consensus 37 l~f~~~~C~~C~~~~~~l~~ 56 (170)
..|+.++||.|......|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~ 21 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS 21 (79)
T ss_pred EEEecCCChhHHHHHHHHHH
Confidence 45778999999888777764
No 187
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.61 E-value=0.063 Score=30.75 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=17.4
Q ss_pred EEEEecCCCCCchHhHHHHHHH
Q 030845 36 LIVNVASKCGFTDSNYSQLTDL 57 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~ 57 (170)
++.|..+|||.|......|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~ 23 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3457789999998888777765
No 188
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.60 E-value=0.15 Score=38.14 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=33.3
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeC
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 73 (170)
+-+|||+||-+.++.|..+-..|..+..+|.. +.++-|..
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a 185 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRA 185 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEE
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEeh
Confidence 45899999999999999999999999999987 88888753
No 189
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.51 E-value=0.12 Score=42.28 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=29.2
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEe
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAF 71 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~v 71 (170)
.+..-+..|....||+|+.....++++....+. +..-.|
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~--i~~~~i 153 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPN--ITHTMI 153 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCC--ceEEEE
Confidence 345667778899999999988888888887653 554444
No 190
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.48 E-value=0.081 Score=31.66 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=24.2
Q ss_pred cEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 33 KVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 33 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+..++.|..+|||+|.+....|.+ .|+.+..+.++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~ 41 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG 41 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence 334556889999999888777753 35666566654
No 191
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.19 Score=35.23 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=44.7
Q ss_pred ecCCCCeeecCcc-CCcEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 18 KDSKGKDVDLSIY-KGKVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 18 ~~~~G~~v~l~~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
.+..|+.|...++ +.+..+|.|- -.-|-.|+++...|.++..-+++.|+..|+|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5678999999997 4445555554 77999999999999999777788899999985
No 192
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.14 E-value=0.18 Score=29.50 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=22.0
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+..|..++||.|.+....|.+ .|+.+-.+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 344678999999888777775 34555555544
No 193
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.08 E-value=0.22 Score=40.77 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=29.3
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEe
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAF 71 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~v 71 (170)
.++.-+..|....||+|+.....++++..+.+. +..-.+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~--i~~~~i 154 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPN--ISHTMI 154 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--ceEEEE
Confidence 455667788899999999888888888887663 544333
No 194
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.00 E-value=0.056 Score=38.75 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=36.8
Q ss_pred CCCeeecC--ccCCcEEEEEEecCCCCCchHhHHHH---HHHHHHhccCCeEEEEeeC
Q 030845 21 KGKDVDLS--IYKGKVLLIVNVASKCGFTDSNYSQL---TDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 21 ~G~~v~l~--~~~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vi~vs~ 73 (170)
+|+.++.- ...|++.|+.|+.-.||+|...-+.+ ..+.+.+++. +.++-+..
T Consensus 24 ~G~~Y~~~~~p~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~-v~~~~~~~ 80 (207)
T PRK10954 24 DGKQYTTLDKPVAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG-TKMTKYHV 80 (207)
T ss_pred CCceeEEecCcCCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC-CeEEEecc
Confidence 46654332 23678999999999999999887765 7788887653 55555443
No 195
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.16 Score=30.58 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=28.1
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFAC 92 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 92 (170)
+..|.-++||+|.+....|. .+|+.+.-+.++. +..++.+++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~~ 46 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMVK 46 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHHH
Confidence 45577889999988777776 3455555554442 23456667774
No 196
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.68 E-value=0.19 Score=30.34 Aligned_cols=32 Identities=6% Similarity=0.276 Sum_probs=22.3
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+..|..+|||+|......|.+ .|+.+-.+.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECC
Confidence 445778999999876666633 56777666655
No 197
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.59 E-value=0.034 Score=40.27 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=24.5
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEE
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEI 68 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~v 68 (170)
++.|+++|||.|....+++.++..-=.+-++.+
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~v 75 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKV 75 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeE
Confidence 556999999999988888887765544444444
No 198
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.42 E-value=0.35 Score=30.79 Aligned_cols=59 Identities=8% Similarity=0.246 Sum_probs=37.2
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAE 98 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 98 (170)
..++++|+=-++.||.....+.++++..+...+. +.++.|-+- ....+-+.+.+++++.
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGVK 76 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCCC
Confidence 4678888667999999999999999999998765 666666442 3456666665666553
No 199
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.037 Score=39.77 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+++.+++.||+.||..|..+...+..+.+.. .++.++.+..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7789999999999999977777777777766 45888887644
No 200
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.24 E-value=0.18 Score=31.72 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=15.9
Q ss_pred EEEEecCCCCCchHhHHHHHHH
Q 030845 36 LIVNVASKCGFTDSNYSQLTDL 57 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~ 57 (170)
++.|..+|||+|.+....|.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3448889999998776655543
No 201
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.00 E-value=0.24 Score=28.88 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=21.7
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
++.|..++||.|.+....|.+ .|+.+..+.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 455778999999888666663 34555555554
No 202
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.00 E-value=0.22 Score=29.06 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=21.7
Q ss_pred EEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 37 IVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 37 l~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
..|..++||.|......|.+ .|+.+-.+.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 34678899999888777764 45666555554
No 203
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.79 E-value=0.54 Score=29.39 Aligned_cols=26 Identities=15% Similarity=0.315 Sum_probs=17.2
Q ss_pred CcEEEEEEe----cCCCCCchHhHHHHHHH
Q 030845 32 GKVLLIVNV----ASKCGFTDSNYSQLTDL 57 (170)
Q Consensus 32 gk~~ll~f~----~~~C~~C~~~~~~l~~~ 57 (170)
.+.++|+-. .+|||+|.+....|.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC 40 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc
Confidence 345566443 37999998777766653
No 204
>PRK10638 glutaredoxin 3; Provisional
Probab=93.59 E-value=0.49 Score=28.44 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+..|..++||+|.+....|.+ .|+.+..+.++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~ 35 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID 35 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 345668899999877777764 34555445544
No 205
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.22 Score=36.47 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=39.3
Q ss_pred cCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEE
Q 030845 19 DSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEI 68 (170)
Q Consensus 19 ~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~v 68 (170)
..+|..+...+..++++++.|.-..||+|.+.++.+.+.+...++..+.+
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~ 120 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVL 120 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEE
Confidence 35566666666667999999999999999999999999888877654443
No 206
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.54 E-value=0.38 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=17.0
Q ss_pred CCcEEEEEEec----CCCCCchHhHHHHHHH
Q 030845 31 KGKVLLIVNVA----SKCGFTDSNYSQLTDL 57 (170)
Q Consensus 31 ~gk~~ll~f~~----~~C~~C~~~~~~l~~~ 57 (170)
+.++++|+--. +|||+|......|.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 44566664332 5999997766666554
No 207
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=93.49 E-value=0.92 Score=30.02 Aligned_cols=35 Identities=6% Similarity=-0.178 Sum_probs=27.7
Q ss_pred CceEEEECCCCcEEEe-cCCCCCchhHHHHHHHHhhc
Q 030845 134 NFTKFLVDTEGNVIGR-YSPTTSPMAIEGDIKNALGD 169 (170)
Q Consensus 134 ~p~~~lid~~G~i~~~-~~g~~~~~~~~~~l~~ll~~ 169 (170)
.|++.+++.++. ++. +.|..+.+.+.+.+++.++.
T Consensus 82 ~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 82 YPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred CCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence 467788888776 665 67888899999999988753
No 208
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.30 E-value=0.16 Score=30.86 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=28.5
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+..|+...||+|....+.+.++...... ++.+..+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 3568888999999999999999855443 4666665554
No 209
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=1.1 Score=37.68 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.6
Q ss_pred cCCcEEEEEEecCCCCCchHhH
Q 030845 30 YKGKVLLIVNVASKCGFTDSNY 51 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~ 51 (170)
-.+||++|...++||..|+.|.
T Consensus 41 ~edkPIflSIGys~CHWChVM~ 62 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMA 62 (667)
T ss_pred HhCCCEEEEeccccccchHHHh
Confidence 3689999999999999998766
No 210
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.1 Score=37.57 Aligned_cols=43 Identities=19% Similarity=0.016 Sum_probs=36.5
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 73 (170)
+.+..||.||+.|-|.|....|.+.++..+|...++.+=.|.+
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDi 185 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDI 185 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceee
Confidence 3468999999999999999999999999999877676665544
No 211
>PRK10824 glutaredoxin-4; Provisional
Probab=92.25 E-value=0.69 Score=30.00 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=18.7
Q ss_pred CCcEEEEEEec----CCCCCchHhHHHHHHH
Q 030845 31 KGKVLLIVNVA----SKCGFTDSNYSQLTDL 57 (170)
Q Consensus 31 ~gk~~ll~f~~----~~C~~C~~~~~~l~~~ 57 (170)
..+.++|+.-. +|||+|.+....|.++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 34566664444 5999998887777665
No 212
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.93 E-value=1.9 Score=35.72 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=24.3
Q ss_pred ccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEE
Q 030845 29 IYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILA 70 (170)
Q Consensus 29 ~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~ 70 (170)
.+++.+.|+.|+...|..|......|+++. ++.++ +.+..
T Consensus 363 ~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~ 402 (555)
T TIGR03143 363 RLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEA 402 (555)
T ss_pred hcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEE
Confidence 455667777777777888866655555555 33333 44433
No 213
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.38 Score=28.48 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=28.3
Q ss_pred EEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 030845 37 IVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFAC 92 (170)
Q Consensus 37 l~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 92 (170)
+.|++..||.|......|..+.- +.+.+-|. .+-..+++|++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v-----~yd~VeIt---------~Sm~NlKrFl~ 46 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV-----DYDFVEIT---------ESMANLKRFLH 46 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC-----Cceeeehh---------hhhhhHHHHHh
Confidence 45889999999888777776532 24444443 25677888874
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.76 E-value=2.8 Score=33.71 Aligned_cols=65 Identities=8% Similarity=0.113 Sum_probs=47.6
Q ss_pred CcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCC
Q 030845 10 KSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQ 75 (170)
Q Consensus 10 ~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 75 (170)
..+....+.-.+|+.+++.+++|..-+|...++ -..|...+...+...+++.++||.||-|.++.
T Consensus 274 e~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 274 ETLSRLPVRLSTNRIVELVQLRDITRPVILAGT-KESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hhhccceEeccCCCEEeHHHhcCcceEEEEECC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 344455555556889999999985433333322 25677889999999999999999999999874
No 215
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.57 E-value=3.5 Score=27.16 Aligned_cols=40 Identities=8% Similarity=-0.094 Sum_probs=33.9
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEe
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAF 71 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~v 71 (170)
..|+++|-|.-.|-|.|..+=..|....++..+. ++++-|
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylv 61 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLV 61 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEE
Confidence 4589999999999999999999999999998774 555555
No 216
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=90.55 E-value=3.2 Score=28.50 Aligned_cols=32 Identities=13% Similarity=-0.040 Sum_probs=19.8
Q ss_pred cCceEEEECCCCcE-EEecCCCCCchhHHHHHH
Q 030845 133 WNFTKFLVDTEGNV-IGRYSPTTSPMAIEGDIK 164 (170)
Q Consensus 133 ~~p~~~lid~~G~i-~~~~~g~~~~~~~~~~l~ 164 (170)
..|.+++++....- .+...+..+++.+.+.|+
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 45888999955443 333466667777777665
No 217
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=90.04 E-value=2.6 Score=33.50 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=34.9
Q ss_pred cccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 129 SRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 129 ~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
|.+.-+|+.|+|+..|.-+.+..|....++|...|++..
T Consensus 73 Yp~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 73 YPYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred cccccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 577888999999999999999999989999998888764
No 218
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=88.96 E-value=1.5 Score=29.78 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=71.7
Q ss_pred CCCCCCcccceEeec-----CCCCe-----eecCccCCcEEEEEEecCCCCCchHhHHHHHHHHH-HhccCCeEEEEe-e
Q 030845 5 ESVPQKSIYEFTVKD-----SKGKD-----VDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYN-KYKHKGLEILAF-P 72 (170)
Q Consensus 5 ~~~~~~~~p~f~l~~-----~~G~~-----v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~-~~~~~~v~vi~v-s 72 (170)
+...+.++|...+.+ .+|+. +..+++-||+-+|..-|--...-.+..+-+..+.. +|+....+--+| +
T Consensus 22 nlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIiN 101 (184)
T COG3054 22 NLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTTIIN 101 (184)
T ss_pred hcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeEEec
Confidence 345666666665544 23333 44566789988887765443322222233333221 222222333222 3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhcCCCCceeEE-eecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecC
Q 030845 73 CNQFLKQEPGTSQEAHEFACTRYKAEYPIFQK-VRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYS 151 (170)
Q Consensus 73 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~ 151 (170)
.|. --+.+---.+.-+ +..+-.||+-.. .|.+| -...+|+.-. ....++++|++|++.+...
T Consensus 102 ~DD---Ai~GtgmFVkssa-e~~Kke~pwSq~vlD~~g-vak~AWqL~e------------~~SaivVlDk~G~Vkfvke 164 (184)
T COG3054 102 TDD---AIPGTGMFVKSSA-ESNKKEYPWSQFVLDSNG-VAKNAWQLKE------------ESSAVVVLDKDGRVKFVKE 164 (184)
T ss_pred cCC---ccccccceeecch-hhccccCCceeeEEccch-hhhhhhcccc------------ccceEEEEcCCCcEEEEec
Confidence 331 1111222233333 333444553322 23344 3343554311 1136789999999999999
Q ss_pred CCCCchhHHHHHH
Q 030845 152 PTTSPMAIEGDIK 164 (170)
Q Consensus 152 g~~~~~~~~~~l~ 164 (170)
|..+..++.+.|.
T Consensus 165 GaLt~aevQ~Vi~ 177 (184)
T COG3054 165 GALTQAEVQQVID 177 (184)
T ss_pred CCccHHHHHHHHH
Confidence 9988888776665
No 219
>PHA03075 glutaredoxin-like protein; Provisional
Probab=88.75 E-value=0.45 Score=30.66 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=26.0
Q ss_pred cEEEEEEecCCCCCchHhHHHHHHHHHHhc
Q 030845 33 KVLLIVNVASKCGFTDSNYSQLTDLYNKYK 62 (170)
Q Consensus 33 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~ 62 (170)
|.+||-|.-+.|+.|......|+++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578888999999999998888888877774
No 220
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=88.69 E-value=1.2 Score=28.49 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=30.4
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKA 97 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (170)
.|..++|+.|++...-|++. |+.+-.+.+. .++.+.+++..++ ...+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~----~~~~~~~el~~~~-~~~~~ 50 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIV----EEPPSKEELKKWL-EKSGL 50 (111)
T ss_pred EEECCCCHHHHHHHHHHHHc-------CCceEEeccc----CCcccHHHHHHHH-HHcCC
Confidence 46688999998887776653 4444444432 1345678888887 34443
No 221
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=2 Score=27.29 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=27.4
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFAC 92 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 92 (170)
.+++++ |.-+|||+|...-..|.+ +. -...++-+.-+ + ...++++++.
T Consensus 13 ~~~VVi-fSKs~C~~c~~~k~ll~~----~~-v~~~vvELD~~------~-~g~eiq~~l~ 60 (104)
T KOG1752|consen 13 ENPVVI-FSKSSCPYCHRAKELLSD----LG-VNPKVVELDED------E-DGSEIQKALK 60 (104)
T ss_pred cCCEEE-EECCcCchHHHHHHHHHh----CC-CCCEEEEccCC------C-CcHHHHHHHH
Confidence 345555 888999999874444444 22 12455555322 2 3347777663
No 222
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=88.51 E-value=1.2 Score=28.80 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=32.5
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEY 99 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.|+.++|+.|+.....|.+ .|+.+-.+.+. .++.+.+++.+++ +..+..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDGI 52 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCCH
Confidence 4678899999888877766 34555444443 2345678888888 4555433
No 223
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=87.73 E-value=1.5 Score=27.67 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=30.3
Q ss_pred EEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcC
Q 030845 37 IVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYK 96 (170)
Q Consensus 37 l~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
..|..++|+.|++....|++. +..++.+-+.- ++.+.+++.++. ...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~------~~~~~~~l~~~~-~~~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK------EPPTKEELKELL-AKLG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc------CCCCHHHHHHHH-HhcC
Confidence 346688999998887766653 22244555532 245678888887 3444
No 224
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=87.52 E-value=1.3 Score=32.69 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=29.6
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHK 64 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~ 64 (170)
.||+.+++..+.|||.|..+.=.|-....+|...
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 5899999999999999998888888888888764
No 225
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.34 E-value=1.9 Score=27.34 Aligned_cols=48 Identities=4% Similarity=0.012 Sum_probs=32.1
Q ss_pred EEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcC
Q 030845 37 IVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYK 96 (170)
Q Consensus 37 l~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
..|..++|+.|++....|.+. +..+.++-+.- ++.+.++++.++. ..+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~------~p~s~~eL~~~l~-~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRK------DGLDAATLERWLA-KVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEeccc------CCCCHHHHHHHHH-HhC
Confidence 346688999998877777654 22345555533 3457899999984 555
No 226
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=86.59 E-value=8.5 Score=26.61 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=33.2
Q ss_pred CCcccceEeec-CCCCeeecCcc---CCcEEEEEEecC-CCCCchHhHHHHHH
Q 030845 9 QKSIYEFTVKD-SKGKDVDLSIY---KGKVLLIVNVAS-KCGFTDSNYSQLTD 56 (170)
Q Consensus 9 ~~~~p~f~l~~-~~G~~v~l~~~---~gk~~ll~f~~~-~C~~C~~~~~~l~~ 56 (170)
|..+|++.++. .||+++.|.+. .|++-|+.|-.. -++.....+..+.+
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~ 53 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCD 53 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHH
Confidence 45678888877 79999988774 689999988765 44444444444443
No 227
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=86.34 E-value=2.8 Score=26.97 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=31.3
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAE 98 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 98 (170)
.|+.++|+.|++....|++. |+.+-.+.+. .++.+.+++.+++ +..+..
T Consensus 4 iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~----~~~~~~~el~~~~-~~~~~~ 52 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEEH-------QIPFEERNLF----KQPLTKEELKEIL-SLTENG 52 (115)
T ss_pred EEeCCCCHHHHHHHHHHHHC-------CCceEEEecC----CCcchHHHHHHHH-HHhcCC
Confidence 45678999998877777663 4444444432 2345678888888 455433
No 228
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=85.80 E-value=2.8 Score=27.79 Aligned_cols=43 Identities=14% Similarity=-0.030 Sum_probs=36.1
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
..|+++|-|.-.|-|.|..+=..|.+..++.++. ..++.|.++
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 5799999999999999999999999999998875 677777544
No 229
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.29 E-value=2.4 Score=28.11 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=30.2
Q ss_pred EEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 030845 37 IVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKA 97 (170)
Q Consensus 37 l~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (170)
..|..++|+.|++...-|.+. |+.+-.+.+. .++.+.+++..++. ..+.
T Consensus 3 ~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~----~~~~~~~eL~~~l~-~~~~ 51 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIF----SSPLTIDEIKQILR-MTED 51 (131)
T ss_pred EEEeCCCChHHHHHHHHHHHc-------CCCcEEeecc----CChhhHHHHHHHHH-HhcC
Confidence 346688999998876655543 4444444432 23456788888884 4433
No 230
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=85.03 E-value=7 Score=27.10 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=45.1
Q ss_pred CCCCCCCcccceEeec-CCCCeeecCcc---CCcEEEEEEecC-CCCCchHhHHHHHHHH-------HHhccC------C
Q 030845 4 SESVPQKSIYEFTVKD-SKGKDVDLSIY---KGKVLLIVNVAS-KCGFTDSNYSQLTDLY-------NKYKHK------G 65 (170)
Q Consensus 4 ~~~~~~~~~p~f~l~~-~~G~~v~l~~~---~gk~~ll~f~~~-~C~~C~~~~~~l~~~~-------~~~~~~------~ 65 (170)
....+|..+|+..++. .||+++.+.+. .|++-|+.|-.. ..+.+...+..|.+.. .+|... -
T Consensus 28 ~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~ 107 (169)
T PF07976_consen 28 GGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSV 107 (169)
T ss_dssp TTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSS
T ss_pred cCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCe
Confidence 3568999999999977 79999999874 789999989865 4445555555555533 344432 2
Q ss_pred eEEEEeeCC
Q 030845 66 LEILAFPCN 74 (170)
Q Consensus 66 v~vi~vs~d 74 (170)
++++.|...
T Consensus 108 ~~~~~I~~~ 116 (169)
T PF07976_consen 108 FDVLLIHSS 116 (169)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEecC
Confidence 788888754
No 231
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=84.58 E-value=4.4 Score=28.86 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=39.6
Q ss_pred cEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCcee
Q 030845 33 KVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIF 102 (170)
Q Consensus 33 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (170)
.-.+..|.-..|+.|...+..+.. .+..+.++.|-.. .+++.++.|+. +++++-..+
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~-------~dD~~Ir~WA~-~~~Idp~~V 165 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQ-------GDDERIRQWAN-RHQIDPAKV 165 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCC-------CCHHHHHHHHH-HcCCCHHHe
Confidence 344555667999999888877744 3345777777543 37899999994 777764433
No 232
>PTZ00062 glutaredoxin; Provisional
Probab=84.41 E-value=4.8 Score=28.89 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCcEEEEEEec----CCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 31 KGKVLLIVNVA----SKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
..++++|+.-+ ++||.|.+....|++. ++.+..+.++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------~i~y~~~DI~ 151 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-------GVKYETYNIF 151 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHc-------CCCEEEEEcC
Confidence 34566765543 4788887666555532 4555555544
No 233
>PRK10026 arsenate reductase; Provisional
Probab=84.04 E-value=11 Score=25.47 Aligned_cols=101 Identities=12% Similarity=0.163 Sum_probs=55.5
Q ss_pred EEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCC-----------CceeEEe
Q 030845 37 IVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAE-----------YPIFQKV 105 (170)
Q Consensus 37 l~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~ 105 (170)
..|+.+.|.-|++.+.-|++. +..++++-+-- ++.+.++++.++. ..+.. |.-+...
T Consensus 5 ~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~------~ppt~~eL~~~l~-~~g~~~~~lint~~~~yr~L~~~ 72 (141)
T PRK10026 5 TIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLE------TPPTRDELVKLIA-DMGISVRALLRKNVEPYEELGLA 72 (141)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeC------CCcCHHHHHHHHH-hCCCCHHHHHHcCCchHHHcCCC
Confidence 345688999998888777664 22345555533 3457899999984 55532 2222110
Q ss_pred ecCCCCCchHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 106 RVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
...-....++..+.... .+- -+=+|++.+|.++.| +++.+.+.|
T Consensus 73 -~~~ls~~e~l~ll~~~P------~LI--KRPIi~~~~~a~i~R-----p~e~v~~~l 116 (141)
T PRK10026 73 -EDKFTDDQLIDFMLQHP------ILI--NRPIVVTPLGTRLCR-----PSEVVLEIL 116 (141)
T ss_pred -ccCCCHHHHHHHHHhCc------cce--eCcEEEcCCCeEEEC-----CHHHHHHHh
Confidence 01111122333332221 011 122688889988887 677666665
No 234
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=83.61 E-value=17 Score=27.40 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=44.8
Q ss_pred CcccceEeecCCCCeeecCccCC-cEEEEEEecCCCCCchHhHHHHHHHHHHhcc--CCeEEEEeeCCCCCCCCCCCHHH
Q 030845 10 KSIYEFTVKDSKGKDVDLSIYKG-KVLLIVNVASKCGFTDSNYSQLTDLYNKYKH--KGLEILAFPCNQFLKQEPGTSQE 86 (170)
Q Consensus 10 ~~~p~f~l~~~~G~~v~l~~~~g-k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~v~vi~vs~d~~~~~~~~~~~~ 86 (170)
..+|=|+++|.+|.++-.+.-.| +.+-++++-. ..- -..|.++.++-++ .++.|+.|+++ .
T Consensus 80 ~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~q--edA---~afL~~lk~~~p~l~~~~kV~pvsL~-----------~ 143 (270)
T TIGR00995 80 AGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQ--EDA---EAFLAQLRKRKPEVGSQAKVVPITLD-----------Q 143 (270)
T ss_pred cCCceEEEEcCCCCeEEEECCCCCceEEEEECCH--HHH---HHHHHHHHhhCccccCCceEEEEEHH-----------H
Confidence 46899999999999987776544 6666533311 112 2334444443332 35899999643 5
Q ss_pred HHHHHHHhcCCCCcee
Q 030845 87 AHEFACTRYKAEYPIF 102 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~ 102 (170)
+.+... -++.|.++
T Consensus 144 vYkl~~--e~l~F~fi 157 (270)
T TIGR00995 144 VYKLKV--EGIGFRFL 157 (270)
T ss_pred HHHHhh--cCccEEEe
Confidence 555542 24777766
No 235
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=83.59 E-value=1.7 Score=31.71 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=23.7
Q ss_pred eEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 136 TKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
.+||||..|+|++...|..+|+++++-+
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve~L~ 277 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVEQLL 277 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHHHHH
Confidence 5699999999999999999998765543
No 236
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=83.15 E-value=2.2 Score=29.72 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=33.0
Q ss_pred EEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCC
Q 030845 35 LLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQ 75 (170)
Q Consensus 35 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 75 (170)
+|.+|+...||.|-...+.|.++.+++.+-.+....+++.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 46667788999999999999999999955557777776553
No 237
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=82.45 E-value=2.7 Score=22.69 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.1
Q ss_pred EEECCCCcEEEecCC--CCCchhHHHHHHHHhh
Q 030845 138 FLVDTEGNVIGRYSP--TTSPMAIEGDIKNALG 168 (170)
Q Consensus 138 ~lid~~G~i~~~~~g--~~~~~~~~~~l~~ll~ 168 (170)
|.|++||++.....| ..+-.++.+.|+++|.
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG 35 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALG 35 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhC
Confidence 789999999988766 3355678888887774
No 238
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=81.82 E-value=3.5 Score=24.64 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=33.4
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeE
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQ 103 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (170)
|+.|....|+-|......|.++..+ .++.+-.|.++. .++ +. ++|+...|++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~--------d~~---l~-~~Y~~~IPVl~ 54 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDIDE--------DPE---LF-EKYGYRIPVLH 54 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETTT--------THH---HH-HHSCTSTSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECCC--------CHH---HH-HHhcCCCCEEE
Confidence 5667788999998777777775444 346666666552 222 33 47777667663
No 239
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=80.72 E-value=32 Score=29.26 Aligned_cols=147 Identities=12% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCCCCCcccceEeec-CCCCeeecCc-c--CCcEEEEEEecC-CCCCchHhHHHHHHHH--------HHhccC------C
Q 030845 5 ESVPQKSIYEFTVKD-SKGKDVDLSI-Y--KGKVLLIVNVAS-KCGFTDSNYSQLTDLY--------NKYKHK------G 65 (170)
Q Consensus 5 ~~~~~~~~p~f~l~~-~~G~~v~l~~-~--~gk~~ll~f~~~-~C~~C~~~~~~l~~~~--------~~~~~~------~ 65 (170)
...+|..+|++.++. .||+++.|.+ + .|++.|+.|-.. -.+.....+..+.+.. .+|... -
T Consensus 462 ~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (634)
T PRK08294 462 GFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDAV 541 (634)
T ss_pred CCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCcE
Confidence 457889999999887 6888877664 2 679999988754 3344555554444433 223221 1
Q ss_pred eEEEEeeCCCCCCCCCCCHHHHHHHHH---HhcCC-CCc-eeEEeecCCCCCchHHHHHhhhcCCccCcccccC-ceEEE
Q 030845 66 LEILAFPCNQFLKQEPGTSQEAHEFAC---TRYKA-EYP-IFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWN-FTKFL 139 (170)
Q Consensus 66 v~vi~vs~d~~~~~~~~~~~~~~~~~~---~~~~~-~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-p~~~l 139 (170)
++++.|...+... ....++-.... ..++. .|. ++.| +..+. ..|.. ++|... -.++|
T Consensus 542 ~~~~~i~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~----------~gi~~~~g~~vv 604 (634)
T PRK08294 542 IDVRAIFQQPHRE---LDLEDVPALLLPRKGRFGLTDYEKVFCA-DLSGA---DIFDL----------RGIDRDRGAVVV 604 (634)
T ss_pred EEEEEEecCCCCc---cchhhCcHhhCCcccccCccchhheecC-CCchh---hHHHh----------hCCCCCceeEEE
Confidence 6677776442111 11111112221 12222 221 2222 10111 23333 344432 47899
Q ss_pred ECCCCcEEEecCCCCCchhHHHHHHHHhhc
Q 030845 140 VDTEGNVIGRYSPTTSPMAIEGDIKNALGD 169 (170)
Q Consensus 140 id~~G~i~~~~~g~~~~~~~~~~l~~ll~~ 169 (170)
+-|||.|-+.. .....+.+.+.+..++.+
T Consensus 605 vRPD~~v~~~~-~l~~~~~l~~yf~~~~~~ 633 (634)
T PRK08294 605 VRPDQYVANVL-PLDAHAELAAFFAGFLLA 633 (634)
T ss_pred ECCCCceEEEe-cCccHHHHHHHHHHhccC
Confidence 99999877653 233456677777776643
No 240
>PRK12559 transcriptional regulator Spx; Provisional
Probab=80.15 E-value=5.1 Score=26.55 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=29.4
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFAC 92 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 92 (170)
+..|..++|+.|++...-|.+. +..++++-+.- ++.+.++++.++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~------~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS------NSMTVDELKSILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC------CcCCHHHHHHHHH
Confidence 3446688999998877655543 11244444433 3457899999984
No 241
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=79.98 E-value=16 Score=24.64 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=23.9
Q ss_pred EEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 34 VLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 34 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
.-++.|..++|+=|..-...|+ ..|++|=.+..|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~ 59 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETD 59 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecC
Confidence 4456677899999976665554 467888777654
No 242
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=77.54 E-value=3.4 Score=31.95 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=34.5
Q ss_pred cccccCceEEEECC-CCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 129 SRIKWNFTKFLVDT-EGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 129 ~~v~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
|.+...|...+||| .|+-+.++.|..+++++...+.+.+.
T Consensus 150 y~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 150 YHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred eeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 46777789999999 79989999998899999999988875
No 243
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=76.83 E-value=3.2 Score=26.55 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=42.4
Q ss_pred CeeecCccCC-cEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCC---CCCHHHHHHHHHHhcCC
Q 030845 23 KDVDLSIYKG-KVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQE---PGTSQEAHEFACTRYKA 97 (170)
Q Consensus 23 ~~v~l~~~~g-k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~---~~~~~~~~~~~~~~~~~ 97 (170)
+.-.++.+.+ .+-|+-|+ .|+.|+ -..+....+++++.|+++|-+++=...+.. =...+.+.+.+.+.+++
T Consensus 26 r~g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi 100 (107)
T PF08821_consen 26 RKGAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGI 100 (107)
T ss_pred ccCccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCC
Confidence 3345677765 57777665 577776 666666777777778887777654321110 01357777777544333
No 244
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=74.87 E-value=19 Score=22.99 Aligned_cols=31 Identities=10% Similarity=-0.084 Sum_probs=20.7
Q ss_pred ceEEEECCCCcEEEecCCCC-CchhHHHHHHHH
Q 030845 135 FTKFLVDTEGNVIGRYSPTT-SPMAIEGDIKNA 166 (170)
Q Consensus 135 p~~~lid~~G~i~~~~~g~~-~~~~~~~~l~~l 166 (170)
|.+.+++.++ ..+...+.. +.+.+.+.+++.
T Consensus 79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 6777888766 455555666 667777777654
No 245
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=74.11 E-value=21 Score=24.99 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=26.7
Q ss_pred EecCCCCCchHhHHHHHHHHHHhcc---CCeEEEEeeCCC
Q 030845 39 NVASKCGFTDSNYSQLTDLYNKYKH---KGLEILAFPCNQ 75 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~---~~v~vi~vs~d~ 75 (170)
|+-.-||.|-...+.|.++.++++. ..+++..+.+++
T Consensus 4 ~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~ 43 (201)
T cd03024 4 WSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNP 43 (201)
T ss_pred EecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeCC
Confidence 4456899999999999999999963 234444554443
No 246
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=73.63 E-value=14 Score=24.50 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=30.7
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEY 99 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.|..++|+.|++...-|.+ .|+.+-.+.+. .++-+.+++..++. ..+..+
T Consensus 4 iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~----~~~~s~~eL~~~l~-~~~~~~ 53 (132)
T PRK13344 4 IYTISSCTSCKKAKTWLNA-------HQLSYKEQNLG----KEPLTKEEILAILT-KTENGI 53 (132)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCCeEEEECC----CCCCCHHHHHHHHH-HhCCCH
Confidence 4567899999886655544 34444444332 23457889999984 545443
No 247
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=73.15 E-value=9.7 Score=26.49 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=45.4
Q ss_pred cEEEEEEecCCCCC-chHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCcee
Q 030845 33 KVLLIVNVASKCGF-TDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIF 102 (170)
Q Consensus 33 k~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (170)
|.+++.+=.|=-|. -....|.+++...++++.|+.++-+|.+ +...++.++ +..+++|-.-
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~-~~l~v~fi~~ 90 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAA-EKLGVPFIYR 90 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhh-hhcCCceeec
Confidence 67777765554442 4467799999999999999999999875 567777777 5777776543
No 248
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=72.93 E-value=12 Score=26.85 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=26.3
Q ss_pred EEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
||..| +-.|..|+.-=..|.++..+ .+|..++..+|
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVD 37 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVD 37 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-S
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCC
Confidence 45555 55999999999999999888 36999999987
No 249
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.60 E-value=1.5 Score=32.10 Aligned_cols=28 Identities=4% Similarity=0.001 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCCCchHhHHHHHHHHHH
Q 030845 33 KVLLIVNVASKCGFTDSNYSQLTDLYNK 60 (170)
Q Consensus 33 k~~ll~f~~~~C~~C~~~~~~l~~~~~~ 60 (170)
....+.|....|++|......+....++
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 146 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCAADQ 146 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHhccc
Confidence 4555556688999998888877776663
No 250
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=72.28 E-value=2.9 Score=33.36 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=21.9
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
++.|..+|||+|.+....|.+ .|+.+-.+.++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 556889999999777666655 35555555554
No 251
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=70.48 E-value=13 Score=26.57 Aligned_cols=40 Identities=8% Similarity=-0.086 Sum_probs=33.2
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
+..-|++.||-.....|+.+=.+|..+.+++-+ ..+|-|+
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvn 122 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVN 122 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEe
Confidence 345788899999889999999999999988754 7788875
No 252
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=70.38 E-value=6.7 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=22.1
Q ss_pred cccccCceEEEECCCCcEEEecCCCCCchhHHHHHHH
Q 030845 129 SRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKN 165 (170)
Q Consensus 129 ~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 165 (170)
.+|.++|+++| +|+.+ .+..+.+++.+.|++
T Consensus 132 ~~i~~tPt~~i---nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 132 LGITGTPTFFI---NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HT-SSSSEEEE---TTCEE---ETTTSHHHHHHHHHH
T ss_pred cCCccccEEEE---CCEEe---CCCCCHHHHHHHHcC
Confidence 57889999766 88775 445678888877764
No 253
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=67.58 E-value=51 Score=24.89 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=29.5
Q ss_pred CcccceEeecCCCCeeecCccC--CcEEEEEEecCCCCCchHhH-HHHHHHHHHhc--cCCeEEEEeeCC
Q 030845 10 KSIYEFTVKDSKGKDVDLSIYK--GKVLLIVNVASKCGFTDSNY-SQLTDLYNKYK--HKGLEILAFPCN 74 (170)
Q Consensus 10 ~~~p~f~l~~~~G~~v~l~~~~--gk~~ll~f~~~~C~~C~~~~-~~l~~~~~~~~--~~~v~vi~vs~d 74 (170)
..+|=|.++|.+|.++-.+.-. ++.+.+.|+ |+... ..|.++..+.+ ..++.|..|+++
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 3589999999999998776654 566666555 33332 33444444433 346999999643
No 254
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=67.08 E-value=30 Score=22.03 Aligned_cols=35 Identities=3% Similarity=-0.122 Sum_probs=23.9
Q ss_pred ceEEEECCCCcEEEe-cCCCCCchhHHHHHHHHhhc
Q 030845 135 FTKFLVDTEGNVIGR-YSPTTSPMAIEGDIKNALGD 169 (170)
Q Consensus 135 p~~~lid~~G~i~~~-~~g~~~~~~~~~~l~~ll~~ 169 (170)
|.+.+++-++.-.+. ..+..+++.+.+.+++.++.
T Consensus 75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence 566777766533444 45667788899998887753
No 255
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=65.73 E-value=36 Score=25.34 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=59.8
Q ss_pred EEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCCCc
Q 030845 34 VLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAE 113 (170)
Q Consensus 34 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (170)
-+|| +.+..|+- ...++.+..+|.++|+.+|-|.-+. -.....+-+.+. .....|-++.| |.......
T Consensus 54 nvLL-~G~rGtGK----SSlVkall~~y~~~GLRlIev~k~~-----L~~l~~l~~~l~-~~~~kFIlf~D-DLsFe~~d 121 (249)
T PF05673_consen 54 NVLL-WGARGTGK----SSLVKALLNEYADQGLRLIEVSKED-----LGDLPELLDLLR-DRPYKFILFCD-DLSFEEGD 121 (249)
T ss_pred ceEE-ecCCCCCH----HHHHHHHHHHHhhcCceEEEECHHH-----hccHHHHHHHHh-cCCCCEEEEec-CCCCCCCc
Confidence 4444 44557763 3456678888888999999996432 223445555553 44566777766 66666667
Q ss_pred hHHHHHhhhcCCccCcccccCceEEEECCCCc
Q 030845 114 PLYKFLKASKTGYFGSRIKWNFTKFLVDTEGN 145 (170)
Q Consensus 114 ~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~ 145 (170)
.-|..++....|. +...|..++|-..-+
T Consensus 122 ~~yk~LKs~LeGg----le~~P~NvliyATSN 149 (249)
T PF05673_consen 122 TEYKALKSVLEGG----LEARPDNVLIYATSN 149 (249)
T ss_pred HHHHHHHHHhcCc----cccCCCcEEEEEecc
Confidence 7777777655544 444566666655444
No 256
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=64.90 E-value=9.8 Score=26.42 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.2
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhc
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYK 62 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~ 62 (170)
|.+|+-..||.|-...+.|.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 455667799999999999999999984
No 257
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=62.21 E-value=34 Score=21.98 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=30.3
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYK 96 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
.|..+.|..|++.+.-|.+- +..++++-+.- ++.+.++++.++. ..+
T Consensus 4 iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~------~p~s~~eL~~~l~-~~g 50 (113)
T cd03033 4 FYEKPGCANNARQKALLEAA-----GHEVEVRDLLT------EPWTAETLRPFFG-DLP 50 (113)
T ss_pred EEECCCCHHHHHHHHHHHHc-----CCCcEEeehhc------CCCCHHHHHHHHH-HcC
Confidence 45678999998877665543 12345555533 3457899999984 444
No 258
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=61.70 E-value=43 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=22.2
Q ss_pred hHhHHHHHHHHHHhccCCeEEEEeeCCC
Q 030845 48 DSNYSQLTDLYNKYKHKGLEILAFPCNQ 75 (170)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 75 (170)
-.+|-.+....+.++++|+.+.-.++..
T Consensus 23 d~eL~~~a~~~~~Lk~~gv~v~RyNL~~ 50 (123)
T PF06953_consen 23 DPELVRFAADLDWLKEQGVEVERYNLAQ 50 (123)
T ss_dssp -HHHHHHHHHHHHHHHTT-EEEEEETTT
T ss_pred CHHHHHHHHHHHHHHhCCceEEEEcccc
Confidence 4688899999999999999988888753
No 259
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=59.68 E-value=10 Score=21.66 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=18.2
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
.|.+.+||.|.+..-.|.+. +..++.+.+.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~ 32 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----GITVELREVE 32 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----CCCcEEEEeC
Confidence 35678999997765555443 2235555553
No 260
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=59.66 E-value=37 Score=21.72 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=31.7
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKA 97 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (170)
.|..+.|.-|++.+.-|++. +..++++-+.- ++.+.+++..++. ..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~------~p~t~~el~~~l~-~~g~ 50 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK------NPPTKSELEAIFA-KLGL 50 (114)
T ss_pred EEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC------CCcCHHHHHHHHH-HcCC
Confidence 35678999999888777663 22244444432 3568899999984 5554
No 261
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=58.94 E-value=14 Score=22.07 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=20.5
Q ss_pred ceEEEECCCCcEEEec-CCCCCchhHHHHHHHH
Q 030845 135 FTKFLVDTEGNVIGRY-SPTTSPMAIEGDIKNA 166 (170)
Q Consensus 135 p~~~lid~~G~i~~~~-~g~~~~~~~~~~l~~l 166 (170)
|...++|.+|+.+-+. .-.++.+++.+.|.+.
T Consensus 43 P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 43 PELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp -EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 8999999999987765 4456777777777653
No 262
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.79 E-value=53 Score=24.05 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=28.2
Q ss_pred cEEEEEEe-cCCCCCchHhHHHHHHHHHHhccC-CeEEEE
Q 030845 33 KVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHK-GLEILA 70 (170)
Q Consensus 33 k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~-~v~vi~ 70 (170)
+.+-|++| -.-||.|-.--+.|.....+++.. .+++..
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w 43 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRW 43 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEe
Confidence 34555566 459999999999999999999854 455443
No 263
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=57.78 E-value=33 Score=22.96 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=27.8
Q ss_pred ceEEEECCCCcEEEec-CCCCCchhHHHHHHHHhhcC
Q 030845 135 FTKFLVDTEGNVIGRY-SPTTSPMAIEGDIKNALGDV 170 (170)
Q Consensus 135 p~~~lid~~G~i~~~~-~g~~~~~~~~~~l~~ll~~~ 170 (170)
|..-++|.+|++.-.. .-.++.+.+.+.+++-++++
T Consensus 118 P~l~llDadgk~kE~lsI~kWntdtl~eff~ekleri 154 (154)
T KOG3384|consen 118 PVLKLLDADGKHKESLSIDKWNTDTLEEFFREKLERI 154 (154)
T ss_pred CeeEeecCCCCccceeeecccChHHHHHHHHHHhcCC
Confidence 8889999999987664 34667788888887766653
No 264
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=57.12 E-value=14 Score=22.16 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=21.8
Q ss_pred EEEECCCCcEEEecCC-----CCCchhHHHHHHHHhhc
Q 030845 137 KFLVDTEGNVIGRYSP-----TTSPMAIEGDIKNALGD 169 (170)
Q Consensus 137 ~~lid~~G~i~~~~~g-----~~~~~~~~~~l~~ll~~ 169 (170)
.+.|+++|.|..-..| ..+.+++++.|.+.+++
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 4899999999876644 56778888888777653
No 265
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=56.60 E-value=23 Score=25.50 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
.|-+|+|..+...-|-|......|+.+..+|++ +.+|-+.
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 577999999999999999999999999999987 6666653
No 266
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=55.64 E-value=16 Score=25.28 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=21.3
Q ss_pred cccccCceEEEECCCCcEEEecCCCCCchhHHHHHH
Q 030845 129 SRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIK 164 (170)
Q Consensus 129 ~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 164 (170)
.++.+.|+++| +|+ ....|..+.+.+.+.|+
T Consensus 163 ~gv~GvP~~vv---~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 163 LGVFGVPTFVV---NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp TTCSSSSEEEE---TTT--EEEESCSSHHHHHHHH-
T ss_pred cCCcccCEEEE---CCE--EEEECCCCHHHHHHHhC
Confidence 57888899666 565 45566667777777664
No 267
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=54.04 E-value=34 Score=24.60 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCc
Q 030845 49 SNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYP 100 (170)
Q Consensus 49 ~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+..|.+.++...++.+|.+++-+| .--..+..+++++.++++.
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liS---------GGF~~~i~~Va~~Lgi~~~ 130 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLIS---------GGFRQLIEPVAEQLGIPKS 130 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEc---------CChHHHHHHHHHHhCCcHh
Confidence 345677888888998999999987 2467888888777777663
No 268
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.73 E-value=22 Score=25.14 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=33.2
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHH
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFA 91 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 91 (170)
.||...|+.-.....++.++..-.++.|+.|+.-.- ++.+.++...-++.|+
T Consensus 44 ~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaq--p~~qs~~draLL~d~W 95 (218)
T COG1535 44 SPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTAQ--PGEQSPEDRALLKDFW 95 (218)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEec--CCcCCHHHHHHHHHhc
Confidence 466777776667777888888888888887766532 2334333334455554
No 269
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=50.43 E-value=66 Score=24.17 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=47.1
Q ss_pred HHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCccc
Q 030845 52 SQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRI 131 (170)
Q Consensus 52 ~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 131 (170)
.-.+++..+|.++|..+|-|+-+ +-.+...+-+-++ ...-.|.++.| |.....-...|..++....| +|
T Consensus 100 SLVKA~~~e~~~~glrLVEV~k~-----dl~~Lp~l~~~Lr-~~~~kFIlFcD-DLSFe~gd~~yK~LKs~LeG----~v 168 (287)
T COG2607 100 SLVKALLNEYADEGLRLVEVDKE-----DLATLPDLVELLR-ARPEKFILFCD-DLSFEEGDDAYKALKSALEG----GV 168 (287)
T ss_pred HHHHHHHHHHHhcCCeEEEEcHH-----HHhhHHHHHHHHh-cCCceEEEEec-CCCCCCCchHHHHHHHHhcC----Cc
Confidence 34567777888888999999522 1111222333332 33445666654 55555556667777654443 46
Q ss_pred ccCceEEEECCCCc
Q 030845 132 KWNFTKFLVDTEGN 145 (170)
Q Consensus 132 ~~~p~~~lid~~G~ 145 (170)
...|..+|+-..-+
T Consensus 169 e~rP~NVl~YATSN 182 (287)
T COG2607 169 EGRPANVLFYATSN 182 (287)
T ss_pred ccCCCeEEEEEecC
Confidence 66677777755443
No 270
>PRK10853 putative reductase; Provisional
Probab=50.16 E-value=61 Score=20.97 Aligned_cols=48 Identities=8% Similarity=-0.002 Sum_probs=30.9
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKA 97 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (170)
.|..+.|.-|++.+.-|.+. +..++++-+-- ++.+.+++..++. +.+.
T Consensus 4 iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k------~p~s~~eL~~~l~-~~g~ 51 (118)
T PRK10853 4 LYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRV------DGLDSELLQGFID-ELGW 51 (118)
T ss_pred EEcCCCCHHHHHHHHHHHHc-----CCCcEEeehcc------CCcCHHHHHHHHH-HcCH
Confidence 45578999998887777653 22244444422 3457899999984 5553
No 271
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=49.95 E-value=7.5 Score=26.38 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=11.4
Q ss_pred CCCCchHhHHHHHHH
Q 030845 43 KCGFTDSNYSQLTDL 57 (170)
Q Consensus 43 ~C~~C~~~~~~l~~~ 57 (170)
+||+|......|+++
T Consensus 15 t~~~C~~ak~iL~~~ 29 (147)
T cd03031 15 TFEDCNNVRAILESF 29 (147)
T ss_pred cChhHHHHHHHHHHC
Confidence 899997776666654
No 272
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=49.48 E-value=60 Score=20.65 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=30.5
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKA 97 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (170)
.|..+.|..|++.+.-|++. +..++++-+.- ++.+.+++..++ +..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~------~~~t~~el~~~l-~~~~~ 50 (112)
T cd03034 3 IYHNPRCSKSRNALALLEEA-----GIEPEIVEYLK------TPPTAAELRELL-AKLGI 50 (112)
T ss_pred EEECCCCHHHHHHHHHHHHC-----CCCeEEEeccc------CCcCHHHHHHHH-HHcCC
Confidence 45678999998877666553 12244444432 345788999998 45553
No 273
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=49.12 E-value=16 Score=27.98 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=11.7
Q ss_pred cCCCCCchHhHHHHHHHHHHh
Q 030845 41 ASKCGFTDSNYSQLTDLYNKY 61 (170)
Q Consensus 41 ~~~C~~C~~~~~~l~~~~~~~ 61 (170)
.+|||.|- ....++.+.+.+
T Consensus 18 ~~~CpGCg-~~~i~~~i~~al 37 (301)
T PRK05778 18 TTWCPGCG-NFGILNAIIQAL 37 (301)
T ss_pred CCCCCCCC-ChHHHHHHHHHH
Confidence 46999994 444444444444
No 274
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=48.26 E-value=20 Score=20.20 Aligned_cols=20 Identities=5% Similarity=-0.142 Sum_probs=14.4
Q ss_pred EEecCCCCCchHhHHHHHHH
Q 030845 38 VNVASKCGFTDSNYSQLTDL 57 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~ 57 (170)
.|+.++|+.|.+..-.|...
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc
Confidence 35567899998777666654
No 275
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=47.98 E-value=32 Score=17.20 Aligned_cols=19 Identities=5% Similarity=0.086 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHhcCCCCc
Q 030845 81 PGTSQEAHEFACTRYKAEYP 100 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (170)
.++.+++++|+ +.+++.++
T Consensus 3 tWs~~~L~~wL-~~~gi~~~ 21 (38)
T PF10281_consen 3 TWSDSDLKSWL-KSHGIPVP 21 (38)
T ss_pred CCCHHHHHHHH-HHcCCCCC
Confidence 46889999999 58888776
No 276
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=47.86 E-value=55 Score=25.48 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=35.9
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
.|||+++.|-...-|.+...+..+.+...+..-.|+.++++...
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~~ 200 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQGS 200 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 68999997777666778889999999888877677889988753
No 277
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=46.71 E-value=96 Score=21.47 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=62.4
Q ss_pred CcccceEeecCCCCeeecCccCC-cEEEEEEecCCCC-------CchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCC
Q 030845 10 KSIYEFTVKDSKGKDVDLSIYKG-KVLLIVNVASKCG-------FTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEP 81 (170)
Q Consensus 10 ~~~p~f~l~~~~G~~v~l~~~~g-k~~ll~f~~~~C~-------~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~ 81 (170)
--+|..++++..--++...+++| |.+++. -.+|- .-+.+++.++++...|.++++.+++=|.. ..+-
T Consensus 20 ~~~Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG---~~~~ 94 (190)
T KOG2961|consen 20 FVLPHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAG---LTEY 94 (190)
T ss_pred eeccccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcC---cccc
Confidence 34566666666555666666666 555553 33442 25678999999999999888877775543 2233
Q ss_pred CCHHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhh
Q 030845 82 GTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKA 121 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 121 (170)
|...+.+..+.+ +...|++--...+.....+.+.++..
T Consensus 95 D~d~s~Ak~le~--k~gIpVlRHs~kKP~ct~E~~~y~~~ 132 (190)
T KOG2961|consen 95 DHDDSKAKALEA--KIGIPVLRHSVKKPACTAEEVEYHFG 132 (190)
T ss_pred CCchHHHHHHHH--hhCCceEeecccCCCccHHHHHHHhC
Confidence 334444444423 45567774333444555666666654
No 278
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=46.64 E-value=46 Score=17.82 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=20.3
Q ss_pred eEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 136 TKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
.+.|.+.+|+|+....+-.+.....+.|+.+
T Consensus 7 ~f~L~a~ng~viasse~Y~sk~~a~~~I~~V 37 (49)
T PF07411_consen 7 RFRLKAGNGEVIASSEGYSSKADAEKGIESV 37 (49)
T ss_dssp EEEEE-TTS-EEEEBEEBSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEecCCcCCHHHHHHHHHHH
Confidence 4578999999999766555666666666544
No 279
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=45.84 E-value=62 Score=19.71 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=21.2
Q ss_pred ceEEEECCCCcEEEec-CCCCC-chhHHHHHHHHhh
Q 030845 135 FTKFLVDTEGNVIGRY-SPTTS-PMAIEGDIKNALG 168 (170)
Q Consensus 135 p~~~lid~~G~i~~~~-~g~~~-~~~~~~~l~~ll~ 168 (170)
|.++++|.+|+-+-.. .|..- .+++.+.|.+++.
T Consensus 39 PaVvvvde~g~~vIplL~GH~GGan~lA~~iA~~lg 74 (84)
T PF11760_consen 39 PAVVVVDEDGRFVIPLLGGHRGGANELARQIAELLG 74 (84)
T ss_dssp -EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHhC
Confidence 7889999999966543 44444 6788888888764
No 280
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.84 E-value=1.5e+02 Score=23.31 Aligned_cols=110 Identities=17% Similarity=0.298 Sum_probs=65.5
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGP 110 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (170)
.+||.++.|.+.+-..=.+.+..|...+ ++.|..++-...|.|+.- -.++++.|. ++.++ +++.- ..|.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l---~~~g~~VllaA~DTFRAa---AiEQL~~w~-er~gv--~vI~~--~~G~ 204 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYL---KQQGKSVLLAAGDTFRAA---AIEQLEVWG-ERLGV--PVISG--KEGA 204 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHH---HHCCCeEEEEecchHHHH---HHHHHHHHH-HHhCC--eEEcc--CCCC
Confidence 4679999999888776656555555554 456777777777754333 356888888 56565 44432 2455
Q ss_pred CCc-hHHHHHhhhcCCccCcccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHH
Q 030845 111 NAE-PLYKFLKASKTGYFGSRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNA 166 (170)
Q Consensus 111 ~~~-~~~~~~~~~~~~~~~~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 166 (170)
+.. -+|+....... +++ -.+|||--|++- +...|++.|+++
T Consensus 205 DpAaVafDAi~~Aka----r~~----DvvliDTAGRLh-------nk~nLM~EL~KI 246 (340)
T COG0552 205 DPAAVAFDAIQAAKA----RGI----DVVLIDTAGRLH-------NKKNLMDELKKI 246 (340)
T ss_pred CcHHHHHHHHHHHHH----cCC----CEEEEeCccccc-------CchhHHHHHHHH
Confidence 543 34554442221 122 348999988743 234455555554
No 281
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=45.75 E-value=85 Score=20.60 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=29.7
Q ss_pred EEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 030845 36 LIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFAC 92 (170)
Q Consensus 36 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 92 (170)
+..|..+.|.-|++.+.-|.+. +..++++-+- .++.+.++++.|+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~------~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDIL------KEPWHADTLRPYFG 48 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEecc------CCCcCHHHHHHHHH
Confidence 3446678999998877776654 2224444442 23457899999984
No 282
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=45.10 E-value=48 Score=22.09 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=22.9
Q ss_pred CceEEEECCCCcEEEec----CCCCCchhHHHHHHHHhh
Q 030845 134 NFTKFLVDTEGNVIGRY----SPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 134 ~p~~~lid~~G~i~~~~----~g~~~~~~~~~~l~~ll~ 168 (170)
.|++-|+ ++|+++... .-..+++.+.+.|..+.+
T Consensus 96 SPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 96 SPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred Cchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 4676666 899998764 223367778888877665
No 283
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=44.33 E-value=21 Score=20.52 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=12.6
Q ss_pred EecCCCCCchHhHHHHHH
Q 030845 39 NVASKCGFTDSNYSQLTD 56 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~ 56 (170)
|....||.|.+..-.|.+
T Consensus 5 y~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 5 YQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEcCCCHHHHHHHHHHHH
Confidence 556789999777655544
No 284
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=42.95 E-value=43 Score=18.97 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=12.0
Q ss_pred eEEEECCCCcEEEec
Q 030845 136 TKFLVDTEGNVIGRY 150 (170)
Q Consensus 136 ~~~lid~~G~i~~~~ 150 (170)
..|.||++|++....
T Consensus 14 v~~~i~~~G~v~~~~ 28 (74)
T TIGR01352 14 VRFTVDADGRVTSVS 28 (74)
T ss_pred EEEEECCCCCEEEEE
Confidence 459999999998653
No 285
>PRK12359 flavodoxin FldB; Provisional
Probab=42.69 E-value=84 Score=21.88 Aligned_cols=30 Identities=17% Similarity=-0.037 Sum_probs=15.7
Q ss_pred EEECCCCcEEEecC-----CCCCchhHHHHHHHHh
Q 030845 138 FLVDTEGNVIGRYS-----PTTSPMAIEGDIKNAL 167 (170)
Q Consensus 138 ~lid~~G~i~~~~~-----g~~~~~~~~~~l~~ll 167 (170)
-++|..++.+.-.. ...+.+.+.++++++.
T Consensus 131 a~~~~~~~f~gl~lD~~nq~~~t~~ri~~W~~~~~ 165 (172)
T PRK12359 131 PLTADGQLFVGLALDEVNQYDLSDERIQQWCEQIL 165 (172)
T ss_pred eeEcCCCEEEEEEEcCCCchhhhHHHHHHHHHHHH
Confidence 45654455665432 1234455677766654
No 286
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=42.40 E-value=38 Score=23.29 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=41.2
Q ss_pred eecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 030845 17 VKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFAC 92 (170)
Q Consensus 17 l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 92 (170)
+.|.||+ ++.+|..|...-+ ....|+. +...+++.++.+.|..++-++.=+ -+-....+.|+.
T Consensus 3 vsDIDGT-iT~SD~~G~i~~~-~G~d~~h------~g~~~l~~~i~~~GY~ilYlTaRp-----~~qa~~Tr~~L~ 65 (157)
T PF08235_consen 3 VSDIDGT-ITKSDVLGHILPI-LGKDWTH------PGAAELYRKIADNGYKILYLTARP-----IGQANRTRSWLA 65 (157)
T ss_pred EEeccCC-cCccchhhhhhhc-cCchhhh------hcHHHHHHHHHHCCeEEEEECcCc-----HHHHHHHHHHHH
Confidence 5688998 6788877765433 3334544 456688888999999999997431 122345567773
No 287
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=42.25 E-value=15 Score=21.35 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=18.7
Q ss_pred eEEEECCCCcEEEecCC-CCCchhHHHHHHHHhh
Q 030845 136 TKFLVDTEGNVIGRYSP-TTSPMAIEGDIKNALG 168 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g-~~~~~~~~~~l~~ll~ 168 (170)
..|.||++|++.....- ......+.+...+.++
T Consensus 20 v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~ 53 (79)
T PF03544_consen 20 VEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVK 53 (79)
T ss_dssp EEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHC
T ss_pred EEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHH
Confidence 45899999999865311 1122235555554443
No 288
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=41.66 E-value=25 Score=26.69 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=13.2
Q ss_pred ecCCCCCchHhHHHHHHHHHHh
Q 030845 40 VASKCGFTDSNYSQLTDLYNKY 61 (170)
Q Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~ 61 (170)
..+|||.|-... .++.+.+.+
T Consensus 16 ~~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 16 EPRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCCcCCCCCCHH-HHHHHHHHH
Confidence 346999996433 555555555
No 289
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=41.59 E-value=45 Score=19.67 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=17.1
Q ss_pred eEEEECCCCcEEEe-cCCCCCchhHHHHHHHHh
Q 030845 136 TKFLVDTEGNVIGR-YSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 136 ~~~lid~~G~i~~~-~~g~~~~~~~~~~l~~ll 167 (170)
..+-||++|+|... .........+.+.+.+.+
T Consensus 30 V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai 62 (85)
T PF13103_consen 30 VRITIDPDGRVISVRIVKSSGNPAFDAAVRRAI 62 (85)
T ss_dssp EEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEecCCCCHHHHHHHHHHH
Confidence 45899999998533 222223445555555554
No 290
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=41.30 E-value=1.2e+02 Score=25.16 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=27.9
Q ss_pred CCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHH
Q 030845 45 GFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFA 91 (170)
Q Consensus 45 ~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 91 (170)
.-...+...|-++..+++++|+.+|.||- ..+++.+.+
T Consensus 175 aLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISH---------rl~Ei~~i~ 212 (500)
T COG1129 175 ALTVKETERLFDLIRRLKAQGVAIIYISH---------RLDEVFEIA 212 (500)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEcC---------cHHHHHHhc
Confidence 34567888888888888888888888873 455555554
No 291
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=41.28 E-value=27 Score=20.28 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=13.5
Q ss_pred EEecCCCCCchHhHHHHHHH
Q 030845 38 VNVASKCGFTDSNYSQLTDL 57 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~ 57 (170)
.+..++||.|.+..-.|.+.
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred EecCCCCchHHHHHHHHHHc
Confidence 35567999997666555543
No 292
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=41.20 E-value=39 Score=23.48 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=23.0
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEE
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEI 68 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~v 68 (170)
.|.-+.|+.|-..-+.+.++..+++.+ +.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~ 31 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEF 31 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEE
Confidence 467889999999999999999999876 443
No 293
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=40.91 E-value=30 Score=18.70 Aligned_cols=29 Identities=7% Similarity=-0.134 Sum_probs=17.6
Q ss_pred EecCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 39 NVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
|...+||.|.+....|... +..++++.+.
T Consensus 4 y~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~ 32 (71)
T cd00570 4 YYFPGSPRSLRVRLALEEK-----GLPYELVPVD 32 (71)
T ss_pred EeCCCCccHHHHHHHHHHc-----CCCcEEEEeC
Confidence 5567899998666655554 2234555554
No 294
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=40.76 E-value=45 Score=21.43 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=28.1
Q ss_pred cccceEeec-CCCCee---ecCccCCcEEEEEEecCCCCCchHhHHHH
Q 030845 11 SIYEFTVKD-SKGKDV---DLSIYKGKVLLIVNVASKCGFTDSNYSQL 54 (170)
Q Consensus 11 ~~p~f~l~~-~~G~~v---~l~~~~gk~~ll~f~~~~C~~C~~~~~~l 54 (170)
.+|+-+|-+ ..++.+ .+.+..|..++|.=-.+-|+.|+-.|..+
T Consensus 41 gFP~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~ 88 (118)
T PF14427_consen 41 GFPESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRA 88 (118)
T ss_pred CCchhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHh
Confidence 355555555 344443 33444588899988888999997655443
No 295
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=40.64 E-value=1e+02 Score=19.98 Aligned_cols=50 Identities=8% Similarity=0.144 Sum_probs=31.2
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEY 99 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.|+.+.|..|++.+.-|++.-- ..+++-+..+ +-+.+++.+++ +..+..+
T Consensus 5 iy~~p~C~t~rka~~~L~~~gi-----~~~~~~y~~~------~~s~~eL~~~l-~~~g~~~ 54 (117)
T COG1393 5 IYGNPNCSTCRKALAWLEEHGI-----EYTFIDYLKT------PPSREELKKIL-SKLGDGV 54 (117)
T ss_pred EEeCCCChHHHHHHHHHHHcCC-----CcEEEEeecC------CCCHHHHHHHH-HHcCccH
Confidence 3568899999887766655311 2344544433 34788999998 4555433
No 296
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=40.03 E-value=55 Score=22.41 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=25.3
Q ss_pred eEEEECCCCcEEEecCC-----CCCchhHHHHHHHHhh
Q 030845 136 TKFLVDTEGNVIGRYSP-----TTSPMAIEGDIKNALG 168 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g-----~~~~~~~~~~l~~ll~ 168 (170)
..+.|+++|.|-.-+.| ..+++++++.|++.++
T Consensus 21 ~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 58 (165)
T TIGR03027 21 GSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLA 58 (165)
T ss_pred cceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHH
Confidence 45899999999877655 4577888888877764
No 297
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=39.95 E-value=90 Score=20.54 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=26.6
Q ss_pred HHHHHHHHhccCCeEEEEeeCCCCCCCC-------CCCHHHHHHHHHHhcCCCCcee
Q 030845 53 QLTDLYNKYKHKGLEILAFPCNQFLKQE-------PGTSQEAHEFACTRYKAEYPIF 102 (170)
Q Consensus 53 ~l~~~~~~~~~~~v~vi~vs~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 102 (170)
...+..+++++.|..++.+|--+..... ..+.....+|+ ++++++|.-+
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL-~k~~ipYd~l 83 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWL-NQHNVPYDEI 83 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHH-HHcCCCCceE
Confidence 3334444444567888888732210000 01113667888 5889998655
No 298
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.80 E-value=56 Score=23.96 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=26.4
Q ss_pred cccccCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhhc
Q 030845 129 SRIKWNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALGD 169 (170)
Q Consensus 129 ~~v~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~~ 169 (170)
.+|+..|++++ +|.+. ..|..+++.+...|+++++.
T Consensus 180 ~gI~gVP~fv~---d~~~~--V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 180 MGIRGVPTFVF---DGKYA--VSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred CCCccCceEEE---cCcEe--ecCCCCHHHHHHHHHHHHhc
Confidence 57888899555 55433 45667889999999998763
No 299
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=39.52 E-value=1.3e+02 Score=20.75 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=39.2
Q ss_pred CCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 8 PQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 8 ~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
|+...|.|.....++ +-+.+.+.+..++.|.-....|+.+.+.|.+..+.|--+.
T Consensus 113 p~~~~P~f~~~~~~~----------~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~ 167 (171)
T PF07700_consen 113 PDAKPPSFRCEEEDD----------NELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVE 167 (171)
T ss_dssp TTSS--EEEEEEEET----------TEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCcCCeEEEEECCC----------CEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 666777777765433 3456667778889999999999999999988446665554
No 300
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=39.33 E-value=30 Score=23.88 Aligned_cols=35 Identities=6% Similarity=-0.040 Sum_probs=26.1
Q ss_pred EecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 39 NVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
|+-.-||.|-...+.|.++..+++ ..+.+..+.++
T Consensus 4 ~~D~~cP~cy~~~~~l~~~~~~~~-~~i~~~p~~l~ 38 (192)
T cd03022 4 YFDFSSPYSYLAHERLPALAARHG-ATVRYRPILLG 38 (192)
T ss_pred EEeCCChHHHHHHHHHHHHHHHhC-CeeEEeeeeHH
Confidence 445699999999999999999885 23665555443
No 301
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=38.46 E-value=30 Score=26.33 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=9.3
Q ss_pred CchhHHHHHHHHhh
Q 030845 155 SPMAIEGDIKNALG 168 (170)
Q Consensus 155 ~~~~~~~~l~~ll~ 168 (170)
+++++.+.|++.++
T Consensus 161 ~~~eL~~ai~~Al~ 174 (287)
T TIGR02177 161 DVAHLKEIIKEAIN 174 (287)
T ss_pred CHHHHHHHHHHHHh
Confidence 56677777776654
No 302
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=38.31 E-value=28 Score=19.64 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=12.0
Q ss_pred EecCCCCCchHhHHHHHH
Q 030845 39 NVASKCGFTDSNYSQLTD 56 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~ 56 (170)
++..+||.|.+..-.|..
T Consensus 4 y~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 4 YIYEHCPFCVKARMIAGL 21 (71)
T ss_pred EecCCCcHhHHHHHHHHH
Confidence 456899999765554443
No 303
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=36.86 E-value=1.4e+02 Score=24.59 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=35.3
Q ss_pred CcEEEEEEe--cC--CCCCchHhHHHHHHHHHHhccCCeEEEEeeCCC
Q 030845 32 GKVLLIVNV--AS--KCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQ 75 (170)
Q Consensus 32 gk~~ll~f~--~~--~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 75 (170)
+||-||+|| |. +-..-+..+..+.++.+-...+||-++.|+-++
T Consensus 253 dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P 300 (502)
T PF05872_consen 253 DKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNP 300 (502)
T ss_pred CCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 489999888 33 333466788899999999999999999998775
No 304
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=36.51 E-value=1.7e+02 Score=21.46 Aligned_cols=46 Identities=9% Similarity=0.119 Sum_probs=27.8
Q ss_pred CCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCC
Q 030845 45 GFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEY 99 (170)
Q Consensus 45 ~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+.+...+..|.++.+.....++.++-++- -+.+...+.+ .+++++.
T Consensus 15 ~~~~~~~~~l~~~l~~~~~~~~~~v~~TG--------Rs~~~~~~~~-~~~~l~~ 60 (247)
T PF05116_consen 15 DGDDEALARLEELLEQQARPEILFVYVTG--------RSLESVLRLL-REYNLPQ 60 (247)
T ss_dssp HCHHHHHHHHHHHHHHHHCCGEEEEEE-S--------S-HHHHHHHH-HHCT-EE
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEECC--------CCHHHHHHHH-HhCCCCC
Confidence 66778888888888833344577777752 2567777776 3544433
No 305
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=36.37 E-value=1.4e+02 Score=20.25 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=45.7
Q ss_pred ccceEeecCCCCeeecCcc-CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 12 IYEFTVKDSKGKDVDLSIY-KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 12 ~p~f~l~~~~G~~v~l~~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
+-++.|.+..|..+++++. +...-++...|+.-.+=...+..++.+++-++...+.+.++.+.
T Consensus 37 Le~l~l~~~~~~~v~l~~~~~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~ 100 (142)
T PF07801_consen 37 LEDLKLLDNPGPFVDLSSSSKNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLS 100 (142)
T ss_pred HhhhhhccCCCcceecccccccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 3455567777888888875 44445554556666677778888888998898888999888763
No 306
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=35.90 E-value=53 Score=24.88 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=14.4
Q ss_pred cCCCCCchHh--HHHHHHHHHHh
Q 030845 41 ASKCGFTDSN--YSQLTDLYNKY 61 (170)
Q Consensus 41 ~~~C~~C~~~--~~~l~~~~~~~ 61 (170)
.+|||.|... +..+++..+++
T Consensus 7 ~~~CpGCg~~~il~al~~al~~l 29 (279)
T PRK11866 7 PIWCPGCGNYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCChHHHHHHHHHHHHh
Confidence 4799999643 56666666665
No 307
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=35.10 E-value=6.1 Score=20.98 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=15.6
Q ss_pred CCCCchHhHHHHHHHHHHhcc
Q 030845 43 KCGFTDSNYSQLTDLYNKYKH 63 (170)
Q Consensus 43 ~C~~C~~~~~~l~~~~~~~~~ 63 (170)
.|.+|+.-++.|.++.+++.+
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCcHhHHHHHHHHHHHHHc
Confidence 577898888899998888753
No 308
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=35.02 E-value=1e+02 Score=19.40 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=26.8
Q ss_pred ecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCc
Q 030845 40 VASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYP 100 (170)
Q Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
..+.|..|++.+.-|.+ .|+.+-.+.+- .++-+.+++..++ +..+..+.
T Consensus 2 ~~~~C~t~rka~~~L~~-------~gi~~~~~d~~----k~p~s~~el~~~l-~~~~~~~~ 50 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEE-------NGIEYEFIDYK----KEPLSREELRELL-SKLGNGPD 50 (110)
T ss_dssp E-TT-HHHHHHHHHHHH-------TT--EEEEETT----TS---HHHHHHHH-HHHTSSGG
T ss_pred cCCCCHHHHHHHHHHHH-------cCCCeEeehhh----hCCCCHHHHHHHH-HHhcccHH
Confidence 45678888777666654 45555555542 2345789999998 46675443
No 309
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=34.73 E-value=37 Score=19.11 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=11.9
Q ss_pred EecCCCCCchHhHHHHH
Q 030845 39 NVASKCGFTDSNYSQLT 55 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~ 55 (170)
|...+||.|.+..-.|.
T Consensus 4 y~~~~~~~~~~v~~~l~ 20 (73)
T cd03059 4 YSGPDDVYSHRVRIVLA 20 (73)
T ss_pred EECCCChhHHHHHHHHH
Confidence 55678999977665553
No 310
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=34.47 E-value=53 Score=22.08 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=28.0
Q ss_pred EEEEEecCCCCCchH-------hHHHHHHHHHHhccCCeEEEEee
Q 030845 35 LLIVNVASKCGFTDS-------NYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 35 ~ll~f~~~~C~~C~~-------~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
.=|.|.++.|=.|.. .-..++++.++|...++.++-=+
T Consensus 31 aevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ 75 (150)
T PF04723_consen 31 AEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGA 75 (150)
T ss_pred ceEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecC
Confidence 345688999999975 34578888999988887665544
No 311
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=34.07 E-value=2.9e+02 Score=23.52 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=33.2
Q ss_pred cEEEEEEecCCCCCchHhHHHHHHHHHHhc-cCCeEEEEeeCC
Q 030845 33 KVLLIVNVASKCGFTDSNYSQLTDLYNKYK-HKGLEILAFPCN 74 (170)
Q Consensus 33 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~vi~vs~d 74 (170)
-.++|.|.|+.-=.-++.+|.|-.++..-. .+++.||++.-.
T Consensus 88 ~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~ 130 (573)
T PLN02640 88 TLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYART 130 (573)
T ss_pred CeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 477787888888788899999999987532 347999999744
No 312
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=33.71 E-value=96 Score=20.75 Aligned_cols=38 Identities=8% Similarity=-0.023 Sum_probs=28.2
Q ss_pred cccCceEEEECCCC---cEEEecCCCCCchhHHHHHHHHhh
Q 030845 131 IKWNFTKFLVDTEG---NVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 131 v~~~p~~~lid~~G---~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
....|...+|-+.. .++.+..|..+++++...|.+.+.
T Consensus 94 ~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 94 TDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred cCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 44456666776554 677888999999999998887664
No 313
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=33.50 E-value=46 Score=20.04 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=11.2
Q ss_pred eEEEECCCCcEEEecCC
Q 030845 136 TKFLVDTEGNVIGRYSP 152 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g 152 (170)
-+.|.|++|+.+++++-
T Consensus 27 D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp EEEEE-TT--EEEETTT
T ss_pred EEEEECCCCCEEEEecC
Confidence 45788999999999853
No 314
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=33.30 E-value=1.3e+02 Score=19.27 Aligned_cols=7 Identities=14% Similarity=-0.016 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 030845 85 QEAHEFA 91 (170)
Q Consensus 85 ~~~~~~~ 91 (170)
..+..++
T Consensus 100 ~~~~~~l 106 (140)
T TIGR01753 100 DDWEERL 106 (140)
T ss_pred HHHHHHH
Confidence 3455555
No 315
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=33.19 E-value=1.7e+02 Score=20.47 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=29.1
Q ss_pred EEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEE--EeeCCCCCCCCCCCHHHHHHHHHHh
Q 030845 35 LLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEIL--AFPCNQFLKQEPGTSQEAHEFACTR 94 (170)
Q Consensus 35 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi--~vs~d~~~~~~~~~~~~~~~~~~~~ 94 (170)
+-+.+.++.|+.....-..+++....+. ++.-+ .+..|+ +|+.+-+.+.++.+
T Consensus 117 I~mtLt~p~c~~~~~L~~dV~~aL~~l~--gV~~V~V~l~~dp-----~W~~~~~s~~ar~~ 171 (174)
T TIGR03406 117 IEMTLTAPGCGMGPVLVEDVEDKVLAVP--NVDEVEVELVFDP-----PWSREMMSEAAKLE 171 (174)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCC--CceeEEEEEEecC-----CCChHHCCHHHHHH
Confidence 4445567788866555555555554443 34433 334443 57777666666433
No 316
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.92 E-value=16 Score=27.90 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=33.6
Q ss_pred cCCcEEEEEEecCCCCCchHhHHHHHH-HHHHhccCCeEEEEeeCC
Q 030845 30 YKGKVLLIVNVASKCGFTDSNYSQLTD-LYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~~~l~~-~~~~~~~~~v~vi~vs~d 74 (170)
+..|+-+|-..|-.-..|..++..++. ++.++...|++++...+|
T Consensus 173 LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPtD 218 (406)
T KOG3859|consen 173 LDSKVNIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPTD 218 (406)
T ss_pred HhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCceeeeccch
Confidence 445666666666666677778877765 888888889999999876
No 317
>PHA02762 hypothetical protein; Provisional
Probab=32.87 E-value=70 Score=17.60 Aligned_cols=16 Identities=6% Similarity=-0.051 Sum_probs=13.0
Q ss_pred eEEEECCCCcEEEecC
Q 030845 136 TKFLVDTEGNVIGRYS 151 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~ 151 (170)
.++=||.+|++.+...
T Consensus 30 vtigide~g~iayisi 45 (62)
T PHA02762 30 VTIGIDENDKISYISI 45 (62)
T ss_pred EEEeECCCCcEEEEEe
Confidence 5678999999998743
No 318
>COG3411 Ferredoxin [Energy production and conversion]
Probab=32.69 E-value=76 Score=18.25 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=19.7
Q ss_pred EEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 138 FLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 138 ~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
+++-++|. +.+..+++...+.+++.+.
T Consensus 20 l~vYpegv----WY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 20 LVVYPEGV----WYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred EEEecCCe----eEeccCHHHHHHHHHHHHh
Confidence 67779993 3335688888888888764
No 319
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=32.13 E-value=1.5e+02 Score=21.94 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhccCCeEEEEeeCCC
Q 030845 51 YSQLTDLYNKYKHKGLEILAFPCNQ 75 (170)
Q Consensus 51 ~~~l~~~~~~~~~~~v~vi~vs~d~ 75 (170)
...|.++-.++.+.|+.|++|.+|.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4556677778888899999998885
No 320
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=31.99 E-value=1.6e+02 Score=19.60 Aligned_cols=16 Identities=13% Similarity=-0.220 Sum_probs=12.4
Q ss_pred cccccCceEEEECCCC
Q 030845 129 SRIKWNFTKFLVDTEG 144 (170)
Q Consensus 129 ~~v~~~p~~~lid~~G 144 (170)
|+|...|+++++..++
T Consensus 67 f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 67 FDITAVPAFVVVKDGL 82 (130)
T ss_pred cCceEcCEEEEECCCC
Confidence 6899999977776553
No 321
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=31.56 E-value=64 Score=21.69 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=27.0
Q ss_pred EEEEEecCCCCCchH-------hHHHHHHHHHHhccCCeEEEEee
Q 030845 35 LLIVNVASKCGFTDS-------NYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 35 ~ll~f~~~~C~~C~~-------~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
.=|.|.+|-|=.|.. .-..++++.++|...++.++-=+
T Consensus 32 aevvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGa 76 (154)
T PRK13265 32 AEVVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGA 76 (154)
T ss_pred ceEEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecc
Confidence 345688999988875 33577888888888776555433
No 322
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=31.34 E-value=1.2e+02 Score=18.09 Aligned_cols=36 Identities=6% Similarity=0.109 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEe
Q 030845 32 GKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAF 71 (170)
Q Consensus 32 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~v 71 (170)
.++++|-|+..+|. .....+.++.+.+++. +.+..+
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~~ 52 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGHT 52 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEEE
Confidence 46777777777776 4566666666666543 544443
No 323
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.77 E-value=2.6e+02 Score=21.78 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=30.0
Q ss_pred EeecCCCCeeecCccCCcEEEEEEecC----CCCCchHhHHHHHHHHHHhcc
Q 030845 16 TVKDSKGKDVDLSIYKGKVLLIVNVAS----KCGFTDSNYSQLTDLYNKYKH 63 (170)
Q Consensus 16 ~l~~~~G~~v~l~~~~gk~~ll~f~~~----~C~~C~~~~~~l~~~~~~~~~ 63 (170)
.+.|.+=+.+.....++--+++.|.|. .|..|.....+++-+.+.+..
T Consensus 44 ~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~ 95 (331)
T KOG2603|consen 44 RMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRY 95 (331)
T ss_pred EecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhc
Confidence 333333333333445666667767654 788898888888888887753
No 324
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=29.86 E-value=87 Score=19.77 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=22.5
Q ss_pred EEEEecCCCCCchHh-HHHHHH--HHHHhccC-CeEEEEe
Q 030845 36 LIVNVASKCGFTDSN-YSQLTD--LYNKYKHK-GLEILAF 71 (170)
Q Consensus 36 ll~f~~~~C~~C~~~-~~~l~~--~~~~~~~~-~v~vi~v 71 (170)
|-.|+-+-||.|+.. ..+|.. .++++.+. ++.++-.
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~ 42 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPF 42 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEE
Confidence 445788999999875 455666 34666554 3444433
No 325
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=29.85 E-value=73 Score=21.53 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=10.4
Q ss_pred HHHHHHHHhccCCe-EEEEee
Q 030845 53 QLTDLYNKYKHKGL-EILAFP 72 (170)
Q Consensus 53 ~l~~~~~~~~~~~v-~vi~vs 72 (170)
.|++..+.+++.|+ .|+.|+
T Consensus 72 ~L~~w~~~l~~~GFkhV~~lT 92 (142)
T PF10673_consen 72 RLNDWCEELKESGFKHVFYLT 92 (142)
T ss_pred HHHHHHHHHHhcCCcEEEEEe
Confidence 45555566655555 344443
No 326
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=29.74 E-value=42 Score=23.04 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=24.0
Q ss_pred cCceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 133 WNFTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 133 ~~p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
..|++|++|=+|.|.+. ..+.+++.|..+|.
T Consensus 96 ~~~r~~VldF~Gdi~A~-----~v~~LReeisail~ 126 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKAS-----EVESLREEISAILS 126 (155)
T ss_pred CCCeEEEEecCCCccHH-----HHHHHHHHHHHHHH
Confidence 35899999999999875 45667777777664
No 327
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=29.74 E-value=93 Score=16.32 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=16.5
Q ss_pred eEEEECCCCcEEEecCCCCCchhHHHHH
Q 030845 136 TKFLVDTEGNVIGRYSPTTSPMAIEGDI 163 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~~~~~l 163 (170)
...++|.+|++++.. +..++.+.+
T Consensus 32 ~~~V~d~~~~~~G~i----s~~dl~~~l 55 (57)
T PF00571_consen 32 RLPVVDEDGKLVGII----SRSDLLKAL 55 (57)
T ss_dssp EEEEESTTSBEEEEE----EHHHHHHHH
T ss_pred EEEEEecCCEEEEEE----EHHHHHhhh
Confidence 567999999988875 445554443
No 328
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=29.47 E-value=79 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.8
Q ss_pred eEEEECCCCcEEEecCCC
Q 030845 136 TKFLVDTEGNVIGRYSPT 153 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g~ 153 (170)
..++.||+|+.+..+.|.
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 368999999999877664
No 329
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=29.37 E-value=38 Score=25.69 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=12.5
Q ss_pred cCCCCCch--HhHHHHHHHHHHh
Q 030845 41 ASKCGFTD--SNYSQLTDLYNKY 61 (170)
Q Consensus 41 ~~~C~~C~--~~~~~l~~~~~~~ 61 (170)
-+|||.|- ..+..+.+...++
T Consensus 8 ~~~CpGCg~~~i~~~~~~a~~~l 30 (280)
T PRK11869 8 IAWCPGCGNFGIRNALMKALSEL 30 (280)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHc
Confidence 56999995 3444444444444
No 330
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.79 E-value=28 Score=22.97 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCCCcccceEeecCCCCeeecCccCC-cEEEEEEec-CCCCCc
Q 030845 7 VPQKSIYEFTVKDSKGKDVDLSIYKG-KVLLIVNVA-SKCGFT 47 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~v~l~~~~g-k~~ll~f~~-~~C~~C 47 (170)
.-+..+|++.|+-+||++- .-++| |.-|-..|- -|-..|
T Consensus 89 typ~tapeialpeldgkta--kmyrggkiclt~hfkplwarn~ 129 (167)
T KOG3357|consen 89 TYPTTAPEIALPELDGKTA--KMYRGGKICLTDHFKPLWARNV 129 (167)
T ss_pred ccCCCCccccccccCchhh--hhhcCceEeeccccchhhhhcC
Confidence 4456799999999999964 33555 666655442 244444
No 331
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=28.78 E-value=38 Score=21.33 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=22.2
Q ss_pred EecCCCCCchHhHHHHHHHHHHhccCCeEEEEe
Q 030845 39 NVASKCGFTDSNYSQLTDLYNKYKHKGLEILAF 71 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~v 71 (170)
||-..||.|......+... +. ...+.++.+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~--~~~l~~~~~ 31 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DR--GGRLRFVDI 31 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CC--CCCEEEEEC
Confidence 5677999999888888777 11 134888887
No 332
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=28.59 E-value=3e+02 Score=22.09 Aligned_cols=71 Identities=20% Similarity=0.414 Sum_probs=42.7
Q ss_pred hccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCCCchHHHHHhhhcCCccCcccccCceEEEE
Q 030845 61 YKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPNAEPLYKFLKASKTGYFGSRIKWNFTKFLV 140 (170)
Q Consensus 61 ~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~li 140 (170)
++.-|.++...++|++ ++.++....++..+++ |+++ .+|......|..+.. -+.+-|. ++|
T Consensus 65 L~a~GAeV~~a~cNpl-----STqD~vaaAl~~~~Gi--pVfA---~kGe~~eeY~~~~~~--------vl~~~p~-iii 125 (420)
T COG0499 65 LKAGGAEVRWASCNPL-----STQDDVAAALAAKEGI--PVFA---WKGETLEEYYEAIDQ--------VLDWEPN-III 125 (420)
T ss_pred HHhcCceEEEecCCCC-----cccHHHHHHHhhccCc--eEEE---EcCCCHHHHHHHHHH--------HhCcCCC-EEE
Confidence 3334566777777763 4556666666444444 5553 467777777776652 2333344 788
Q ss_pred CCCCcEEEec
Q 030845 141 DTEGNVIGRY 150 (170)
Q Consensus 141 d~~G~i~~~~ 150 (170)
|..|......
T Consensus 126 DDG~D~~~~v 135 (420)
T COG0499 126 DDGGDLTKLV 135 (420)
T ss_pred ecCcceeeee
Confidence 8777766543
No 333
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=28.52 E-value=1.2e+02 Score=20.10 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=27.4
Q ss_pred HHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeE
Q 030845 56 DLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQ 103 (170)
Q Consensus 56 ~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (170)
++.++++++ +++++++... +.+.+.+-+ .+|++.|-.+.
T Consensus 16 dVi~~~~d~-f~v~~Lsa~~-------n~~~L~~q~-~~f~p~~v~i~ 54 (129)
T PF02670_consen 16 DVIRKHPDK-FEVVALSAGS-------NIEKLAEQA-REFKPKYVVIA 54 (129)
T ss_dssp HHHHHCTTT-EEEEEEEESS-------THHHHHHHH-HHHT-SEEEES
T ss_pred HHHHhCCCc-eEEEEEEcCC-------CHHHHHHHH-HHhCCCEEEEc
Confidence 455666664 8898888763 778888888 47888876664
No 334
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=27.83 E-value=91 Score=17.64 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHhcCCCC
Q 030845 83 TSQEAHEFACTRYKAEY 99 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (170)
+...+++|+ +..++.|
T Consensus 46 ~~~~l~~~l-D~~gIt~ 61 (64)
T PF09494_consen 46 DPSKLKEWL-DSQGITF 61 (64)
T ss_pred CHHHHHHHH-HHCCcee
Confidence 456666666 4555543
No 335
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.52 E-value=90 Score=21.32 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=19.0
Q ss_pred CceEEEECCCCcEEEecCCCCCchhHH
Q 030845 134 NFTKFLVDTEGNVIGRYSPTTSPMAIE 160 (170)
Q Consensus 134 ~p~~~lid~~G~i~~~~~g~~~~~~~~ 160 (170)
.-.+.++|.++.+++...-..+..++.
T Consensus 114 ~dEvlVVne~d~LlAvGra~ls~~E~~ 140 (155)
T COG1370 114 GDEVLVVNEDDELLAVGRALLSGAEMR 140 (155)
T ss_pred CCeEEEECCCCcEEEeeeEeecHHHHh
Confidence 346799999999998865444555443
No 336
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=27.49 E-value=36 Score=16.61 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=9.8
Q ss_pred EeecCCCCeeecCc
Q 030845 16 TVKDSKGKDVDLSI 29 (170)
Q Consensus 16 ~l~~~~G~~v~l~~ 29 (170)
++.|.+|+++++.+
T Consensus 14 ~l~Dv~G~~Inl~~ 27 (32)
T PF10813_consen 14 PLKDVKGNPINLYK 27 (32)
T ss_pred cccccCCCEEechh
Confidence 45677888877754
No 337
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=27.43 E-value=1.4e+02 Score=19.33 Aligned_cols=50 Identities=10% Similarity=0.232 Sum_probs=27.4
Q ss_pred CCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCcee
Q 030845 43 KCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIF 102 (170)
Q Consensus 43 ~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (170)
.||+| ..+.-+-..+..+.++ ++|.-|.... +...+-+.+- +-+=+-|++
T Consensus 23 ~Cp~c-~~iEGlLa~~P~l~~~-ldV~rV~f~R-------PR~~vi~llG-E~~QslPvL 72 (112)
T PF11287_consen 23 YCPHC-AAIEGLLASFPDLRER-LDVRRVDFPR-------PRQAVIALLG-EANQSLPVL 72 (112)
T ss_pred ECCch-HHHHhHHhhChhhhhc-ccEEEeCCCC-------chHHHHHHhC-hhccCCCEE
Confidence 59999 4455555555666554 6666664321 4555555552 323344544
No 338
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=27.43 E-value=2e+02 Score=19.37 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=27.0
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEee
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFP 72 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs 72 (170)
..++-++.+|-..|+.|.....-|.+. =+...+.+.++.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~---D~~~~i~f~~~q 43 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRR---DQGGRIRFAALQ 43 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHh---ccCCcEEEEecc
Confidence 356778888999999998866555543 123457777773
No 339
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=26.93 E-value=77 Score=21.09 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=11.9
Q ss_pred eEEEECCCCcEEE
Q 030845 136 TKFLVDTEGNVIG 148 (170)
Q Consensus 136 ~~~lid~~G~i~~ 148 (170)
.++++|++|++++
T Consensus 52 ~~~~~d~~g~~~~ 64 (161)
T PF05228_consen 52 LIFILDPDGRVLY 64 (161)
T ss_pred EEEEEcCCCCEEE
Confidence 5699999999998
No 340
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=26.74 E-value=53 Score=19.45 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=12.8
Q ss_pred eEEEECCCCcEEEe
Q 030845 136 TKFLVDTEGNVIGR 149 (170)
Q Consensus 136 ~~~lid~~G~i~~~ 149 (170)
..+|++++|.++..
T Consensus 17 ~~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 17 GAVLVDKDGLVIAS 30 (91)
T ss_dssp EEEEEETTSEEEEE
T ss_pred EEEEEcCCCCEEEE
Confidence 67999999999988
No 341
>PRK06756 flavodoxin; Provisional
Probab=26.62 E-value=1.8e+02 Score=19.14 Aligned_cols=7 Identities=14% Similarity=-0.287 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 030845 85 QEAHEFA 91 (170)
Q Consensus 85 ~~~~~~~ 91 (170)
..+.+.+
T Consensus 104 ~~l~~~l 110 (148)
T PRK06756 104 DILIEKL 110 (148)
T ss_pred HHHHHHH
Confidence 3444444
No 342
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=26.62 E-value=68 Score=18.01 Aligned_cols=18 Identities=0% Similarity=-0.276 Sum_probs=12.3
Q ss_pred EecCCCCCchHhHHHHHH
Q 030845 39 NVASKCGFTDSNYSQLTD 56 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~ 56 (170)
|+...|+.|.+..-.|.+
T Consensus 4 y~~~~~~~~~~v~~~l~~ 21 (74)
T cd03045 4 YYLPGSPPCRAVLLTAKA 21 (74)
T ss_pred EeCCCCCcHHHHHHHHHH
Confidence 557789999765555554
No 343
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=26.36 E-value=2.6e+02 Score=20.32 Aligned_cols=28 Identities=7% Similarity=-0.129 Sum_probs=18.0
Q ss_pred cccccCceEEEECCCCcEEEecCCCCCchh
Q 030845 129 SRIKWNFTKFLVDTEGNVIGRYSPTTSPMA 158 (170)
Q Consensus 129 ~~v~~~p~~~lid~~G~i~~~~~g~~~~~~ 158 (170)
|+|...|++++....+. .+..|..+...
T Consensus 158 F~I~~VPafVv~C~~~y--D~I~GNIsl~~ 185 (212)
T PRK13730 158 YGIRSVPALVVFCSQGY--DIIRGNLRVGQ 185 (212)
T ss_pred cCCccccEEEEEcCCCC--CEEEecccHHH
Confidence 78999999888755433 33455555443
No 344
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.15 E-value=2.3e+02 Score=22.99 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=34.6
Q ss_pred cCCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCC
Q 030845 30 YKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAE 98 (170)
Q Consensus 30 ~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 98 (170)
-++|+.+|.|..-.-..-++.+..|.-. |+++|..+.-|.-|.|+... -++++..+ .+-+++
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y---~kkkG~K~~LvcaDTFRagA---fDQLkqnA-~k~~iP 158 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYY---YKKKGYKVALVCADTFRAGA---FDQLKQNA-TKARVP 158 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHH---HHhcCCceeEEeecccccch---HHHHHHHh-HhhCCe
Confidence 3688999988754433322222333322 34477888888877655443 34666655 344443
No 345
>PRK15383 type III secretion system protein; Provisional
Probab=26.09 E-value=1.9e+02 Score=21.62 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=56.3
Q ss_pred CCCCCcccceEeecCCCCeeecCccCCcEEEEEEecCCCCC----------chHhHHHHHHHHHHhccCCeEEEEeeCCC
Q 030845 6 SVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGF----------TDSNYSQLTDLYNKYKHKGLEILAFPCNQ 75 (170)
Q Consensus 6 ~~~~~~~p~f~l~~~~G~~v~l~~~~gk~~ll~f~~~~C~~----------C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 75 (170)
..|..+.|.....+-.|+.+.|.-+..|.-+|+-|+.--|. -.++.|.|.++-+.-.=..-.+|+|-+|.
T Consensus 18 ~~p~~~~~~~q~~sFaGkeY~l~~iDektPilFQWFE~nP~R~~k~evPIiNTk~~PYL~NiinaA~IE~eR~IGv~VDG 97 (335)
T PRK15383 18 IAPTLSPPSSGHVSFAGIDYPLLPLDHHTPLVFQWFERNPDRFGQNEIPIINTQKNPYLNNIINAAIIEKERIIGIFVDG 97 (335)
T ss_pred ccccccCCCccceeecCccccccccCCCCCeeeeeccCCHHHhCCCCCceeecCcCchHHHhhhHhhhccccEEEEEEcC
Confidence 34566667777777889999998888888888778665552 33566778887766543345678887774
Q ss_pred CCCCCCCCHHHHHHHHHHh
Q 030845 76 FLKQEPGTSQEAHEFACTR 94 (170)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~ 94 (170)
+ -+..+.++|.+-+
T Consensus 98 --d---Fs~~Qk~af~kLE 111 (335)
T PRK15383 98 --D---FSKGQRKALGKLE 111 (335)
T ss_pred --C---cChhHHHHHHHHH
Confidence 1 2456666776533
No 346
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=25.95 E-value=15 Score=15.44 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=8.0
Q ss_pred CCCchHhHHHHHHHHH
Q 030845 44 CGFTDSNYSQLTDLYN 59 (170)
Q Consensus 44 C~~C~~~~~~l~~~~~ 59 (170)
|+.|....+...++..
T Consensus 3 C~~C~~~~~~~~~l~~ 18 (24)
T PF13894_consen 3 CPICGKSFRSKSELRQ 18 (24)
T ss_dssp -SSTS-EESSHHHHHH
T ss_pred CcCCCCcCCcHHHHHH
Confidence 6777666555555443
No 347
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.17 E-value=1.8e+02 Score=18.04 Aligned_cols=43 Identities=7% Similarity=0.130 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCC
Q 030845 51 YSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEY 99 (170)
Q Consensus 51 ~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+|.-.+..+.+++.|..++.++.+. ..+.++..+.+ .+.+++.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns-----~~s~~~~~~~L-~~~Gi~~ 58 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS-----SRSREEYAKKL-KKLGIPV 58 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S-----SS-HHHHHHHH-HHTTTT-
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC-----CCCHHHHHHHH-HhcCcCC
Confidence 4445566666677788999998774 33556666666 4666653
No 348
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=24.83 E-value=3.6e+02 Score=21.46 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred ceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 135 FTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 135 p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
+++|++ ++|+++- |.|..+++.+...|..++.
T Consensus 114 ~SiyVf-kd~~~IE-ydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 114 GSIYVF-KDGEVIE-YDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp TEEEEE-ETTEEEE-E-S--SHHHHHHHHHHHHS
T ss_pred CcEEEE-ECCcEEE-ecCccCHHHHHHHHHHhcc
Confidence 466665 7888775 6699999999999988864
No 349
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=24.83 E-value=42 Score=19.54 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=11.9
Q ss_pred eEEEECCCCcEEEec
Q 030845 136 TKFLVDTEGNVIGRY 150 (170)
Q Consensus 136 ~~~lid~~G~i~~~~ 150 (170)
..||+|++|+++..-
T Consensus 55 ~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 55 YAFIVDKNGTIIAHP 69 (81)
T ss_dssp EEEEEETTSBBCE-S
T ss_pred EEEEEECCCCEEEeC
Confidence 469999999999853
No 350
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=24.25 E-value=2.6e+02 Score=19.72 Aligned_cols=37 Identities=3% Similarity=0.031 Sum_probs=25.3
Q ss_pred EEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCC
Q 030845 38 VNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQ 75 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 75 (170)
.|+-.-||.|-.-...|.++.++.+ ..+....+.+++
T Consensus 5 ~~~D~vcPwcylg~~~l~~~~~~~~-v~i~~~P~~L~~ 41 (209)
T cd03021 5 LYYDVVSPYSYLAFEVLCRYQTAWN-VDITYVPVFLGG 41 (209)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC-CeEEEEeeehhH
Confidence 3446689999999999999887643 235555555543
No 351
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=24.24 E-value=49 Score=16.82 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=13.9
Q ss_pred cCCcEEEE-EEecCCCCCch
Q 030845 30 YKGKVLLI-VNVASKCGFTD 48 (170)
Q Consensus 30 ~~gk~~ll-~f~~~~C~~C~ 48 (170)
++|+.++| .+.+-.|+.|-
T Consensus 20 ~~~~~~~i~~vp~~~C~~CG 39 (46)
T TIGR03831 20 YGGELIVIENVPALVCPQCG 39 (46)
T ss_pred eCCEEEEEeCCCccccccCC
Confidence 46777777 66777899984
No 352
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=24.08 E-value=1.7e+02 Score=17.64 Aligned_cols=38 Identities=5% Similarity=0.040 Sum_probs=19.9
Q ss_pred HHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCC
Q 030845 57 LYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEY 99 (170)
Q Consensus 57 ~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
..+..+...+..+-|+.|- ++...+.+..++ +.+++++
T Consensus 16 vlkaIk~gkakLViiA~Da----~~~~~k~i~~~c-~~~~Vpv 53 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDA----EEHVTKKIKELC-EEKSIKI 53 (82)
T ss_pred HHHHHHcCCeeEEEEeCCC----CHHHHHHHHHHH-HhCCCCE
Confidence 3344443346666666553 123445555556 4667766
No 353
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=24.04 E-value=2.2e+02 Score=19.29 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHH
Q 030845 49 SNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFA 91 (170)
Q Consensus 49 ~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 91 (170)
....=|++-.+++++.+..-+-|+++ +.+.++...
T Consensus 73 ~S~~WL~~~~~~L~~l~AvGlVVNV~--------t~~~L~~Lr 107 (142)
T PF11072_consen 73 LSRQWLQQNAEELKQLGAVGLVVNVA--------TEAALQRLR 107 (142)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH
Confidence 45566777888888777766666665 566666654
No 354
>PF14903 WG_beta_rep: WG containing repeat
Probab=23.87 E-value=57 Score=15.34 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=8.8
Q ss_pred EECCCCcEEEe
Q 030845 139 LVDTEGNVIGR 149 (170)
Q Consensus 139 lid~~G~i~~~ 149 (170)
+||.+|+++-.
T Consensus 3 ~id~~G~~vi~ 13 (35)
T PF14903_consen 3 YIDKNGKIVIP 13 (35)
T ss_pred EEeCCCCEEEE
Confidence 78899998754
No 355
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=23.81 E-value=24 Score=23.74 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.0
Q ss_pred CCCCCchHhHHHHHH
Q 030845 42 SKCGFTDSNYSQLTD 56 (170)
Q Consensus 42 ~~C~~C~~~~~~l~~ 56 (170)
.-||+|+..+|.|.-
T Consensus 10 i~CPhCRQ~ipALtL 24 (163)
T TIGR02652 10 IRCPHCRQNIPALTL 24 (163)
T ss_pred CcCchhhcccchhee
Confidence 379999998887753
No 356
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=23.76 E-value=23 Score=23.72 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=11.9
Q ss_pred CCCCCchHhHHHHHH
Q 030845 42 SKCGFTDSNYSQLTD 56 (170)
Q Consensus 42 ~~C~~C~~~~~~l~~ 56 (170)
.-||+|...+|.|.-
T Consensus 7 i~CPhCRq~ipALtL 21 (161)
T PF09654_consen 7 IQCPHCRQTIPALTL 21 (161)
T ss_pred CcCchhhcccchhee
Confidence 379999998887753
No 357
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=23.72 E-value=1.1e+02 Score=24.10 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=25.1
Q ss_pred EEECCCCcEEEecCC-----CCCchhHHHHHHHHhhc
Q 030845 138 FLVDTEGNVIGRYSP-----TTSPMAIEGDIKNALGD 169 (170)
Q Consensus 138 ~lid~~G~i~~~~~g-----~~~~~~~~~~l~~ll~~ 169 (170)
+.|+++|.|-.-+.| ..+++++++.|.+.|++
T Consensus 105 ~~V~~dG~I~~P~vG~V~vaG~T~~q~~~~I~~~L~~ 141 (355)
T PRK15175 105 ILVTDSNTVQVPYAGTIPVSGLDVTQLADEIKKRLSR 141 (355)
T ss_pred eEECCCCeEEecccceEEECCCCHHHHHHHHHHHHHh
Confidence 799999999887755 45778888888776653
No 358
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=23.67 E-value=93 Score=23.86 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.9
Q ss_pred eEEEECCCCcEEEec
Q 030845 136 TKFLVDTEGNVIGRY 150 (170)
Q Consensus 136 ~~~lid~~G~i~~~~ 150 (170)
.+|+||++|++++..
T Consensus 106 ~vf~vd~~G~~vy~~ 120 (295)
T COG3322 106 GVFVVDPSGKLVYSK 120 (295)
T ss_pred EEEEECCCCCEEEEe
Confidence 569999999999874
No 359
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=23.59 E-value=87 Score=21.61 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=17.7
Q ss_pred cCCCCCchHhHHHHHHHHHHhccCCe
Q 030845 41 ASKCGFTDSNYSQLTDLYNKYKHKGL 66 (170)
Q Consensus 41 ~~~C~~C~~~~~~l~~~~~~~~~~~v 66 (170)
.++|+.| -+-+.+..+.+.+++..+
T Consensus 4 ~~~c~gc-~~~~~~~~l~~~l~~~~i 28 (178)
T cd02008 4 PGLCPGC-PHRPSFYALRKAFKKDSI 28 (178)
T ss_pred CCcCCCC-CChHHHHHHHHHhcCCeE
Confidence 3689999 556677778777775433
No 360
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=23.32 E-value=77 Score=16.03 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=12.4
Q ss_pred CcEEEEEE----ecCCCCCchHhHH
Q 030845 32 GKVLLIVN----VASKCGFTDSNYS 52 (170)
Q Consensus 32 gk~~ll~f----~~~~C~~C~~~~~ 52 (170)
|+|+++.+ |...|+.|.+++.
T Consensus 10 ~eP~~~k~~~~~y~fCC~tC~~~fk 34 (37)
T PF08394_consen 10 GEPIVVKIGNKVYYFCCPTCLSQFK 34 (37)
T ss_pred CCEEEEEECCeEEEEECHHHHHHHH
Confidence 44555543 3457888876653
No 361
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=23.30 E-value=4.3e+02 Score=21.88 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=25.1
Q ss_pred CCCCcccceEeecCCCCeeecCccCC-cEEEEEEec
Q 030845 7 VPQKSIYEFTVKDSKGKDVDLSIYKG-KVLLIVNVA 41 (170)
Q Consensus 7 ~~~~~~p~f~l~~~~G~~v~l~~~~g-k~~ll~f~~ 41 (170)
.+|..+|+..+. .+|..+++.++-| ..+||.|..
T Consensus 428 ~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~~ 462 (547)
T PRK08132 428 VPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFGD 462 (547)
T ss_pred CCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEecC
Confidence 478889998876 4677777877644 688887653
No 362
>PTZ00304 NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Probab=23.08 E-value=69 Score=26.22 Aligned_cols=21 Identities=10% Similarity=0.252 Sum_probs=18.4
Q ss_pred CCCCchHhHHHHHHHHHHhcc
Q 030845 43 KCGFTDSNYSQLTDLYNKYKH 63 (170)
Q Consensus 43 ~C~~C~~~~~~l~~~~~~~~~ 63 (170)
+|.+|+.-++.|.++++++.+
T Consensus 369 QCtPCReGt~~L~~iL~~i~~ 389 (461)
T PTZ00304 369 QCTPCREGTPWLVKMMERFVV 389 (461)
T ss_pred CCCChHhHHHHHHHHHHHHHc
Confidence 788999999999999988764
No 363
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=22.87 E-value=1.3e+02 Score=18.74 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=15.3
Q ss_pred eEEEECCCCcEEEecCCC
Q 030845 136 TKFLVDTEGNVIGRYSPT 153 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g~ 153 (170)
..++.||+|..+..+.|.
T Consensus 94 ~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 94 SFYFLDPDGHKLELHVGS 111 (121)
T ss_pred EEEEECCCCCEEEEEeCC
Confidence 569999999999888764
No 364
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=22.84 E-value=75 Score=21.01 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHhcCC
Q 030845 82 GTSQEAHEFACTRYKA 97 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~ 97 (170)
.+++++.+|..++||-
T Consensus 74 ~sd~eI~~~~v~RYG~ 89 (126)
T PRK10144 74 KSEVEIIGWMTERYGD 89 (126)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 3788999998887764
No 365
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=22.76 E-value=3e+02 Score=19.78 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=31.2
Q ss_pred hHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCce
Q 030845 48 DSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPI 101 (170)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (170)
....|...++.+.+++.|..++-||- +...+.+.+.++.++.+-+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSg---------g~~~lv~~ia~~lg~d~~~ 120 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISG---------GFTFLVEPIAERLGIDYVV 120 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcC---------ChHHHHHHHHHHhCCchhe
Confidence 45567778888888888888888873 4555655555666665543
No 366
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=22.75 E-value=3.9e+02 Score=21.12 Aligned_cols=61 Identities=10% Similarity=0.203 Sum_probs=40.0
Q ss_pred EEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeec
Q 030845 35 LLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRV 107 (170)
Q Consensus 35 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (170)
++=.++.|-...-.....++.+|.+ .|.+++-|+++ +.++...+..-+.+++.|++.|...
T Consensus 23 ~VQSMTnT~T~Dv~aTv~QI~~L~~----aG~dIVRvtv~--------~~e~A~A~~~Ik~~~~vPLVaDiHf 83 (361)
T COG0821 23 VVQSMTNTDTADVEATVAQIKALER----AGCDIVRVTVP--------DMEAAEALKEIKQRLNVPLVADIHF 83 (361)
T ss_pred EEEeccCCCcccHHHHHHHHHHHHH----cCCCEEEEecC--------CHHHHHHHHHHHHhCCCCEEEEeec
Confidence 3334566666666677777777755 57888888876 4555555544345778999987554
No 367
>PF13021 DUF3885: Domain of unknown function (DUF3885)
Probab=22.54 E-value=1.2e+02 Score=15.35 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=9.5
Q ss_pred hccCCeEEEEee
Q 030845 61 YKHKGLEILAFP 72 (170)
Q Consensus 61 ~~~~~v~vi~vs 72 (170)
|.++|+.|++.+
T Consensus 4 YDDRGcdvia~~ 15 (38)
T PF13021_consen 4 YDDRGCDVIANN 15 (38)
T ss_pred ccCCCcEEeeCC
Confidence 567899999974
No 368
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=22.38 E-value=1.4e+02 Score=17.53 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCcEEEEEEecCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCC
Q 030845 31 KGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 74 (170)
.+.-+-+.|++..-..-...-..+.++.+++...|+.+..+++.
T Consensus 34 ~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~ 77 (85)
T PF02120_consen 34 QGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVS 77 (85)
T ss_dssp ETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEE
T ss_pred eCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEE
Confidence 44566677876655555566677888888888899988877765
No 369
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=22.31 E-value=2.9e+02 Score=19.46 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=35.0
Q ss_pred cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCc
Q 030845 41 ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYP 100 (170)
Q Consensus 41 ~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
++-|..--..-..+..+..+++=+...+|+|+-+. +.-.+-+++|+++..+-...
T Consensus 43 ~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvsv~~~~-----pk~del~akF~~EH~H~d~E 97 (181)
T COG1791 43 AEKEHIIDAYETEIDRLIRERGYKNRDVVSVSPSN-----PKLDELRAKFLQEHLHTDDE 97 (181)
T ss_pred cchhhhHhhHHHHHHHHHHhhCCceeeEEEeCCCC-----ccHHHHHHHHHHHhccCCce
Confidence 55555433566777888888776678999997542 23345567888655554443
No 370
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=22.19 E-value=67 Score=24.56 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=13.5
Q ss_pred CCCCCchHhHHHHHHHHHHhc
Q 030845 42 SKCGFTDSNYSQLTDLYNKYK 62 (170)
Q Consensus 42 ~~C~~C~~~~~~l~~~~~~~~ 62 (170)
+|||.| -+...|+.+.+.+.
T Consensus 16 ~~CpGC-G~~~~l~~i~~a~~ 35 (294)
T COG1013 16 RWCPGC-GEFIILKLLTQALG 35 (294)
T ss_pred CcCCCC-CchHHHHHHHHhcc
Confidence 699999 55566666665533
No 371
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=22.15 E-value=1.7e+02 Score=16.78 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=20.4
Q ss_pred CCCeeecCccCCcEEEEEEecCCCCCchHhHHHH
Q 030845 21 KGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQL 54 (170)
Q Consensus 21 ~G~~v~l~~~~gk~~ll~f~~~~C~~C~~~~~~l 54 (170)
+|=.+.+-+.++..+.|.|. -.|..|+.....+
T Consensus 15 dGGdv~lv~v~~~~V~V~l~-GaC~gC~~s~~Tl 47 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLT-GACSGCPSSDMTL 47 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEE-SSCCSSCCHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEE-eCCCCCCCHHHHH
Confidence 55667777787777777665 3455665444444
No 372
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=22.14 E-value=53 Score=19.80 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=16.8
Q ss_pred CCCCCchHhHHHHHHHHHHhcc
Q 030845 42 SKCGFTDSNYSQLTDLYNKYKH 63 (170)
Q Consensus 42 ~~C~~C~~~~~~l~~~~~~~~~ 63 (170)
..||.|..++...+.+...++.
T Consensus 37 ~~C~~C~~e~~~~~~~~~~L~~ 58 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKLLKR 58 (84)
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 4799999999877777666553
No 373
>PHA01548 hypothetical protein
Probab=22.00 E-value=1.9e+02 Score=19.39 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=18.9
Q ss_pred eEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 136 TKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
+..|||++|+-... ..+.+...|++++.
T Consensus 106 rvvlidKdGkayha-----~SQgVVssIQkiis 133 (167)
T PHA01548 106 RVVLIDKDGKAYHA-----VSQGVVSSIQKIIS 133 (167)
T ss_pred EEEEEccCCCEeee-----ehHHHHHHHHHHHH
Confidence 56899999985544 34456666766653
No 374
>PRK10200 putative racemase; Provisional
Probab=21.94 E-value=1.8e+02 Score=21.16 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeE
Q 030845 49 SNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQ 103 (170)
Q Consensus 49 ~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (170)
...+.|.+..+.+.+.|++++.+.+| +.-...+.+++. .+.|++.
T Consensus 59 ~~~~~l~~~~~~L~~~g~~~iviaCN--------Tah~~~~~l~~~--~~iPii~ 103 (230)
T PRK10200 59 KTGDILAEAALGLQRAGAEGIVLCTN--------TMHKVADAIESR--CSLPFLH 103 (230)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCc--------hHHHHHHHHHHh--CCCCEee
Confidence 35678888888888889999999887 444444444333 3556653
No 375
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=21.85 E-value=2.1e+02 Score=17.68 Aligned_cols=31 Identities=10% Similarity=-0.012 Sum_probs=20.4
Q ss_pred ceEEEECCCCcEEEecCCCCCchhHHHHHHHHhh
Q 030845 135 FTKFLVDTEGNVIGRYSPTTSPMAIEGDIKNALG 168 (170)
Q Consensus 135 p~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 168 (170)
|.+-+.+|+|.+.+. ..+++++.+.+++.+.
T Consensus 49 PlV~V~~p~g~v~Y~---~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 49 PLVEVETPGGRVAYG---PVTPADVASLLDAGAL 79 (92)
T ss_pred CEEEEEeCCCcEEEE---eCCHHHHHHHHHHHhh
Confidence 555566788865554 4578887777776543
No 376
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=21.56 E-value=3.2e+02 Score=23.36 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=38.3
Q ss_pred cEEEEEEe-cCCCCCchHhHHHHHHHHHHhccCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHhcCCCCceeEEeecCCCC
Q 030845 33 KVLLIVNV-ASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQEAHEFACTRYKAEYPIFQKVRVNGPN 111 (170)
Q Consensus 33 k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (170)
.|+.|-=. .+....-...+.++.++.+ .|.++|-|++.. ..+......+++-+ .+.+.+-|+++|.......
T Consensus 25 ~PI~vQSMt~t~T~D~~atv~Qi~~l~~----aGceiVRvtv~~--~~~a~~l~~I~~~l-~~~G~~iPLVADIHF~~~~ 97 (611)
T PRK02048 25 NPIRIQSMTNTSTMDTEACVAQAKRIID----AGGEYVRLTTQG--VREAENLMNINIGL-RSQGYMVPLVADVHFNPKV 97 (611)
T ss_pred CceEEEecCCCCcccHHHHHHHHHHHHH----cCCCEEEEcCCC--HHHHHhHHHHHHHH-hhcCCCCCEEEecCCCcHH
Confidence 56655433 3333344455555555544 578888887652 11111112222222 1346789999886655544
Q ss_pred Cc
Q 030845 112 AE 113 (170)
Q Consensus 112 ~~ 113 (170)
+.
T Consensus 98 A~ 99 (611)
T PRK02048 98 AD 99 (611)
T ss_pred HH
Confidence 33
No 377
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=21.28 E-value=50 Score=25.95 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.2
Q ss_pred cCCCCCchHhHHHHHHHHHHhcc
Q 030845 41 ASKCGFTDSNYSQLTDLYNKYKH 63 (170)
Q Consensus 41 ~~~C~~C~~~~~~l~~~~~~~~~ 63 (170)
.++||.|...+..|+++.+++-.
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999988854
No 378
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=20.93 E-value=4e+02 Score=21.60 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=6.4
Q ss_pred EEEECCCCcEE
Q 030845 137 KFLVDTEGNVI 147 (170)
Q Consensus 137 ~~lid~~G~i~ 147 (170)
..++|.+|+++
T Consensus 248 ~~vvd~~G~~l 258 (446)
T PRK14324 248 LVVVDEKGEIV 258 (446)
T ss_pred EEEECCCCCEe
Confidence 35666666644
No 379
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=2.7e+02 Score=22.77 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=28.6
Q ss_pred cccccCceEEEECCCCcEEEec----------------CCCCCchhHHHHHHHH
Q 030845 129 SRIKWNFTKFLVDTEGNVIGRY----------------SPTTSPMAIEGDIKNA 166 (170)
Q Consensus 129 ~~v~~~p~~~lid~~G~i~~~~----------------~g~~~~~~~~~~l~~l 166 (170)
++++++..+|=+|.+|.+.-.. .|..+++++.+.+.+.
T Consensus 499 RGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eA 552 (663)
T KOG0100|consen 499 RGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEA 552 (663)
T ss_pred CCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHH
Confidence 6788888999999999765332 4567788887777654
No 380
>PF02625 XdhC_CoxI: XdhC and CoxI family; InterPro: IPR003777 This entry is often found in association with an NAD-binding region, related to TrkA-N (IPR003148 from INTERPRO). XdhC is believed to be involved in the attachment of molybdenum to Xanthine Dehydrogenase [].; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=20.67 E-value=1.6e+02 Score=17.00 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=19.0
Q ss_pred eEEEECCCCcEEEecCCCCCchhHHHHHHHHh
Q 030845 136 TKFLVDTEGNVIGRYSPTTSPMAIEGDIKNAL 167 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 167 (170)
+..+|.++|++.....|.--..++.+...+++
T Consensus 28 a~mlv~~dg~~~GtigGG~lE~~v~~~A~~~l 59 (71)
T PF02625_consen 28 AKMLVTPDGETIGTIGGGCLEADVIERAREAL 59 (71)
T ss_dssp -EEEEETTS-EEE-SSSSCHHHHHHHHHHHHH
T ss_pred CeEEEeCCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 45899999998887665443444555555544
No 381
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=20.54 E-value=89 Score=20.66 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHhcCC
Q 030845 82 GTSQEAHEFACTRYKA 97 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~ 97 (170)
.+++++.+|..++||-
T Consensus 74 ~Sd~eI~~~~v~RYG~ 89 (126)
T TIGR03147 74 KSNQQIIDFMTARFGD 89 (126)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 3788999998887765
No 382
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=20.28 E-value=3.6e+02 Score=20.40 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=17.5
Q ss_pred eEEEECC---CCcEEEecCCCCCchhHHHHHHH
Q 030845 136 TKFLVDT---EGNVIGRYSPTTSPMAIEGDIKN 165 (170)
Q Consensus 136 ~~~lid~---~G~i~~~~~g~~~~~~~~~~l~~ 165 (170)
.+.|+|+ +-..|-+..|..++++..+.+++
T Consensus 133 eiviFdRSwYnr~gVeRVmGfct~~q~~rfl~e 165 (270)
T COG2326 133 EIVIFDRSWYNRAGVERVMGFCTPKQYKRFLRE 165 (270)
T ss_pred eEEEechhhccccCeeeccccCCHHHHHHHHHH
Confidence 4567776 33345556777777765555543
Done!