Your job contains 1 sequence.
>030846
MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL
RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK
FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVSDKF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030846
(170 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2087842 - symbol:NRPB5 species:3702 "Arabidops... 699 6.3e-69 1
FB|FBgn0033571 - symbol:Rpb5 "Rpb5" species:7227 "Drosoph... 401 2.4e-37 1
MGI|MGI:1913670 - symbol:Polr2e "polymerase (RNA) II (DNA... 399 3.9e-37 1
RGD|1589817 - symbol:Polr2e "polymerase (RNA) II (DNA dir... 399 3.9e-37 1
UNIPROTKB|F2Z4J4 - symbol:POLR2E "DNA-directed RNA polyme... 398 4.9e-37 1
UNIPROTKB|E2R2E8 - symbol:POLR2E "Uncharacterized protein... 398 4.9e-37 1
UNIPROTKB|F6X571 - symbol:POLR2E "Uncharacterized protein... 398 4.9e-37 1
UNIPROTKB|I3LSI7 - symbol:POLR2E "Uncharacterized protein... 398 4.9e-37 1
UNIPROTKB|Q5R587 - symbol:POLR2E "DNA-directed RNA polyme... 398 4.9e-37 1
UNIPROTKB|F1NHV9 - symbol:POLR2E "Uncharacterized protein... 397 6.3e-37 1
ZFIN|ZDB-GENE-040801-83 - symbol:polr2eb "polymerase (RNA... 392 2.1e-36 1
UNIPROTKB|P19388 - symbol:POLR2E "DNA-directed RNA polyme... 390 3.5e-36 1
UNIPROTKB|Q2T9T3 - symbol:POLR2E "DNA-directed RNA polyme... 388 5.7e-36 1
WB|WBGene00019246 - symbol:rpb-5 species:6239 "Caenorhabd... 385 1.2e-35 1
DICTYBASE|DDB_G0291636 - symbol:rpb5 "RNA polymerase II c... 364 2.0e-33 1
TAIR|locus:2174388 - symbol:RPB5C ""RNA polymerase II fif... 343 3.3e-31 1
GENEDB_PFALCIPARUM|PF13_0341 - symbol:PF13_0341 "DNA-dire... 311 8.2e-28 1
UNIPROTKB|Q8ID59 - symbol:PF13_0341 "DNA-directed RNA pol... 311 8.2e-28 1
POMBASE|SPAC23C4.15 - symbol:rpb5 "DNA-directed RNA polym... 297 2.5e-26 1
SGD|S000000358 - symbol:RPB5 "RNA polymerase subunit ABC2... 286 3.6e-25 1
TAIR|locus:2040257 - symbol:RPB5D ""RNA polymerase II fif... 281 1.2e-24 1
TAIR|locus:2080650 - symbol:NRPE5 species:3702 "Arabidops... 277 3.3e-24 1
ASPGD|ASPL0000062840 - symbol:AN0752 species:162425 "Emer... 178 3.2e-21 2
TAIR|locus:2096971 - symbol:RPB5E ""RNA polymerase II fif... 227 6.5e-19 1
TAIR|locus:2089338 - symbol:AT3G16680 species:3702 "Arabi... 213 2.0e-17 1
>TAIR|locus:2087842 [details] [associations]
symbol:NRPB5 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IPI] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IPI] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351 EMBL:AB022215
GO:GO:0003899 GO:GO:0000418 GO:GO:0005665 eggNOG:COG2012
HOGENOM:HOG000205213 KO:K03013 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
OMA:DEAETYK UniGene:At.28063 HSSP:O27122 EMBL:AF019248
EMBL:AF370551 EMBL:AF412101 EMBL:AY086150 EMBL:BT002130
IPI:IPI00519907 PIR:T51950 RefSeq:NP_188871.1 UniGene:At.6260
ProteinModelPortal:O81098 SMR:O81098 DIP:DIP-48677N IntAct:O81098
STRING:O81098 PaxDb:O81098 PRIDE:O81098 EnsemblPlants:AT3G22320.1
GeneID:821801 KEGG:ath:AT3G22320 TAIR:At3g22320 InParanoid:O81098
PhylomeDB:O81098 ProtClustDB:PLN03111 Genevestigator:O81098
Uniprot:O81098
Length = 205
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 133/164 (81%), Positives = 152/164 (92%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
L++EE+KRL+RI++T+MQMLRDRGYF+ D E+ M+K+QFI K G+NMKREDLV KA RN
Sbjct: 2 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D+SDQ+Y+FFPDE KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCI EIS+KFH
Sbjct: 62 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFH 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LEVFQEAE+LVNIKEHVLVPEHQVLT EEKKTLL+RYTVKETQ+
Sbjct: 122 LEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQL 165
>FB|FBgn0033571 [details] [associations]
symbol:Rpb5 "Rpb5" species:7227 "Drosophila melanogaster"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 EMBL:AE013599 GO:GO:0007095 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG2012 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 GeneTree:ENSGT00390000013841
HSSP:P20434 OMA:DEAETYK EMBL:AY071329 RefSeq:NP_610630.1
UniGene:Dm.5984 SMR:Q7JZF5 STRING:Q7JZF5 EnsemblMetazoa:FBtr0088237
EnsemblMetazoa:FBtr0331935 GeneID:36160 KEGG:dme:Dmel_CG11979
UCSC:CG11979-RA CTD:36160 FlyBase:FBgn0033571 InParanoid:Q7JZF5
OrthoDB:EOG4MCVGC GenomeRNAi:36160 NextBio:797126 Uniprot:Q7JZF5
Length = 210
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 81/170 (47%), Positives = 117/170 (68%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL RY +KE +
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENML 170
>MGI|MGI:1913670 [details] [associations]
symbol:Polr2e "polymerase (RNA) II (DNA directed)
polypeptide E" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 MGI:MGI:1913670 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:BC045521
IPI:IPI00337955 RefSeq:NP_079830.2 UniGene:Mm.18579
ProteinModelPortal:Q80UW8 SMR:Q80UW8 IntAct:Q80UW8 STRING:Q80UW8
PhosphoSite:Q80UW8 PaxDb:Q80UW8 PRIDE:Q80UW8 DNASU:66420
Ensembl:ENSMUST00000004786 GeneID:66420 KEGG:mmu:66420
InParanoid:Q80UW8 NextBio:321639 Bgee:Q80UW8 CleanEx:MM_POLR2E
Genevestigator:Q80UW8 GermOnline:ENSMUSG00000004667 Uniprot:Q80UW8
Length = 210
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 78/167 (46%), Positives = 117/167 (70%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E+Q+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQL 170
>RGD|1589817 [details] [associations]
symbol:Polr2e "polymerase (RNA) II (DNA directed) polypeptide E"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;ISS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0006468 "protein phosphorylation"
evidence=ISO] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 RGD:1589817 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 EMBL:BC158787 IPI:IPI00765968
RefSeq:NP_001103084.1 UniGene:Rn.65038 ProteinModelPortal:B0BNE2
SMR:B0BNE2 STRING:B0BNE2 PRIDE:B0BNE2 Ensembl:ENSRNOT00000018169
GeneID:690966 KEGG:rno:690966 UCSC:RGD:1589817 NextBio:742073
ArrayExpress:B0BNE2 Genevestigator:B0BNE2 Uniprot:B0BNE2
Length = 210
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 78/167 (46%), Positives = 117/167 (70%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E+Q+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQL 170
>UNIPROTKB|F2Z4J4 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9913 "Bos taurus" [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 IPI:IPI00702043 UniGene:Bt.4678 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:DAAA02020247
ProteinModelPortal:F2Z4J4 PRIDE:F2Z4J4 Ensembl:ENSBTAT00000027684
Uniprot:F2Z4J4
Length = 210
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 78/167 (46%), Positives = 116/167 (69%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>UNIPROTKB|E2R2E8 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
Ensembl:ENSCAFT00000031075 Uniprot:E2R2E8
Length = 212
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 78/167 (46%), Positives = 116/167 (69%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>UNIPROTKB|F6X571 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK Ensembl:ENSCAFT00000031075
EMBL:AAEX03012666 Uniprot:F6X571
Length = 210
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 78/167 (46%), Positives = 116/167 (69%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>UNIPROTKB|I3LSI7 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 KO:K03013 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:FP475994
RefSeq:XP_003354010.1 RefSeq:XP_003354011.1
ProteinModelPortal:I3LSI7 PRIDE:I3LSI7 Ensembl:ENSSSCT00000023998
GeneID:100623333 KEGG:ssc:100623333 Uniprot:I3LSI7
Length = 210
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 78/167 (46%), Positives = 116/167 (69%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>UNIPROTKB|Q5R587 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9601 "Pongo abelii" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0003677
GO:GO:0006468 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
HOVERGEN:HBG057019 KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 EMBL:CR860977
RefSeq:NP_001126823.1 UniGene:Pab.18581 ProteinModelPortal:Q5R587
GeneID:100173829 KEGG:pon:100173829 InParanoid:Q5R587
Uniprot:Q5R587
Length = 210
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 78/167 (46%), Positives = 116/167 (69%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>UNIPROTKB|F1NHV9 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:AADN02066638
IPI:IPI00604284 Ensembl:ENSGALT00000004080 Uniprot:F1NHV9
Length = 215
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 78/167 (46%), Positives = 116/167 (69%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 9 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 68
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 69 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 128
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 129 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 175
>ZFIN|ZDB-GENE-040801-83 [details] [associations]
symbol:polr2eb "polymerase (RNA) II (DNA directed)
polypeptide E, b" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 ZFIN:ZDB-GENE-040801-83 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
HOVERGEN:HBG057019 KO:K03013 OrthoDB:EOG479F81 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:CU695074
EMBL:BC077151 IPI:IPI00497952 RefSeq:NP_001003564.1
UniGene:Dr.82162 STRING:Q6DEG5 Ensembl:ENSDART00000035670
GeneID:445170 KEGG:dre:445170 CTD:445170 InParanoid:Q6DEG5
NextBio:20831932 Uniprot:Q6DEG5
Length = 210
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 77/167 (46%), Positives = 116/167 (69%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQL 170
>UNIPROTKB|P19388 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
Reactome:REACT_116125 GO:GO:0019048 GO:GO:0016032 GO:GO:0003677
Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471139 GO:GO:0006368
GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006370
GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892 GO:GO:0003899
EMBL:AC004151 GO:GO:0006386 GO:GO:0006385 GO:GO:0005665 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 EMBL:J04965
EMBL:S42643 EMBL:D38251 EMBL:AK312625 EMBL:BC004441 EMBL:BC034144
IPI:IPI00291093 PIR:S52002 RefSeq:NP_002686.2 UniGene:Hs.24301
ProteinModelPortal:P19388 SMR:P19388 DIP:DIP-56N IntAct:P19388
MINT:MINT-193645 STRING:P19388 PhosphoSite:P19388 DMDM:116242767
REPRODUCTION-2DPAGE:IPI00291093 SWISS-2DPAGE:P19388 PaxDb:P19388
PeptideAtlas:P19388 PRIDE:P19388 DNASU:5434 Ensembl:ENST00000215587
GeneID:5434 KEGG:hsa:5434 UCSC:uc002lre.4 GeneCards:GC19M001086
HGNC:HGNC:9192 MIM:180664 neXtProt:NX_P19388 PharmGKB:PA33512
InParanoid:P19388 OMA:DEAETYK PhylomeDB:P19388 GenomeRNAi:5434
NextBio:21025 ArrayExpress:P19388 Bgee:P19388 CleanEx:HS_POLR2E
Genevestigator:P19388 GermOnline:ENSG00000099817 Uniprot:P19388
Length = 210
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 77/167 (46%), Positives = 115/167 (68%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+ G+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>UNIPROTKB|Q2T9T3 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9913 "Bos taurus" [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0006468 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 EMBL:BC111280 IPI:IPI00702043
RefSeq:NP_001033182.1 UniGene:Bt.4678 ProteinModelPortal:Q2T9T3
STRING:Q2T9T3 PRIDE:Q2T9T3 GeneID:512971 KEGG:bta:512971 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019
InParanoid:Q2T9T3 KO:K03013 OrthoDB:EOG479F81 NextBio:20870640
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 Uniprot:Q2T9T3
Length = 210
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 78/167 (46%), Positives = 115/167 (68%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG----ENM-KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V ++ + E+F A+FG E +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>WB|WBGene00019246 [details] [associations]
symbol:rpb-5 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006351
GO:GO:0040035 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 EMBL:FO081567 RefSeq:NP_491961.1
ProteinModelPortal:Q9N5K2 SMR:Q9N5K2 IntAct:Q9N5K2 STRING:Q9N5K2
PaxDb:Q9N5K2 EnsemblMetazoa:H27M09.2 GeneID:172412
KEGG:cel:CELE_H27M09.2 CTD:172412 WormBase:H27M09.2
GeneTree:ENSGT00390000013841 InParanoid:Q9N5K2 OMA:DQPLETF
NextBio:875409 Uniprot:Q9N5K2
Length = 211
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 78/171 (45%), Positives = 118/171 (69%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F ++G+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+++ K+ LE F EAEL+VNI EH LVPEH V+T EEK LL RY +K++Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQL 171
>DICTYBASE|DDB_G0291636 [details] [associations]
symbol:rpb5 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
dictyBase:DDB_G0291636 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006366 GO:GO:0006383 GO:GO:0006360
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 GO:GO:0005665
eggNOG:COG2012 KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 RefSeq:XP_635268.1
HSSP:P20434 ProteinModelPortal:Q54EH2 STRING:Q54EH2 GeneID:8628212
KEGG:ddi:DDB_G0291636 ProtClustDB:PTZ00061 Uniprot:Q54EH2
Length = 197
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 80/163 (49%), Positives = 105/163 (64%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+I RL +IR+TV+QML DR Y + +E +E F++ RE+L + ++D +
Sbjct: 2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPT 54
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA--KFHL 123
D IYVFFPD KVGV +K Y + MK RAI+VVQQN+TPFA+ + E S K L
Sbjct: 55 DSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITL 114
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
E F EAELLVNI H LVP+H +LT EEK LL RY +KE+Q+
Sbjct: 115 EQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQL 157
>TAIR|locus:2174388 [details] [associations]
symbol:RPB5C ""RNA polymerase II fifth largest subunit,
C"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006351 EMBL:AB013396
GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
ProtClustDB:PLN03111 IPI:IPI00523401 RefSeq:NP_200606.1
UniGene:At.55610 ProteinModelPortal:Q9FJL8 SMR:Q9FJL8 STRING:Q9FJL8
PaxDb:Q9FJL8 PRIDE:Q9FJL8 EnsemblPlants:AT5G57980.1 GeneID:835909
KEGG:ath:AT5G57980 TAIR:At5g57980 InParanoid:Q9FJL8 OMA:GYTIEES
PhylomeDB:Q9FJL8 Genevestigator:Q9FJL8 Uniprot:Q9FJL8
Length = 210
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 70/170 (41%), Positives = 113/170 (66%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKR---EDLVIN 57
M+ D+EI R+F++RRTV+QMLRDRGY + + ++N+ +E+F+ +F + M + E L ++
Sbjct: 1 MSDMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVS 60
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTN-RMKSENVFRAILVVQQNLTPFARTCIQE 116
+ +D+IYVF+P+ KVGV +K +M+ + V R I+VV +T AR + E
Sbjct: 61 ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ +EVF+EAEL+ NI EH LV ++ VL ++ KK LL YTV++TQ+
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQL 170
>GENEDB_PFALCIPARUM|PF13_0341 [details] [associations]
symbol:PF13_0341 "DNA-directed RNA polymerase
2, putative" species:5833 "Plasmodium falciparum" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 GO:GO:0003677 GO:GO:0006366
EMBL:AL844509 GO:GO:0003899 GO:GO:0005665 HOGENOM:HOG000205213
KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287
ProtClustDB:PTZ00061 OMA:DEAETYK RefSeq:XP_001350359.1 HSSP:O27122
ProteinModelPortal:Q8ID59 PRIDE:Q8ID59
EnsemblProtists:PF13_0341:mRNA GeneID:814300 KEGG:pfa:PF13_0341
EuPathDB:PlasmoDB:PF3D7_1364800 Uniprot:Q8ID59
Length = 205
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 67/164 (40%), Positives = 104/164 (63%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-MKREDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F +N +R + I+ +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S+++I V+F DE +K GVK ++ T RM+ +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E F + ELLVNI +H LVP H LT++EKK LL+RY + E ++
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKL 165
>UNIPROTKB|Q8ID59 [details] [associations]
symbol:PF13_0341 "DNA-directed RNA polymerase 2, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0006366 EMBL:AL844509
GO:GO:0003899 GO:GO:0005665 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287
ProtClustDB:PTZ00061 OMA:DEAETYK RefSeq:XP_001350359.1 HSSP:O27122
ProteinModelPortal:Q8ID59 PRIDE:Q8ID59
EnsemblProtists:PF13_0341:mRNA GeneID:814300 KEGG:pfa:PF13_0341
EuPathDB:PlasmoDB:PF3D7_1364800 Uniprot:Q8ID59
Length = 205
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 67/164 (40%), Positives = 104/164 (63%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-MKREDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F +N +R + I+ +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S+++I V+F DE +K GVK ++ T RM+ +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E F + ELLVNI +H LVP H LT++EKK LL+RY + E ++
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKL 165
>POMBASE|SPAC23C4.15 [details] [associations]
symbol:rpb5 "DNA-directed RNA polymerase I, II and III
subunit Rpb5" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IGI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=IGI] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IGI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IGI]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 PomBase:SPAC23C4.15 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006366 GO:GO:0006383
GO:GO:0006360 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
GO:GO:0005665 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 OMA:DEAETYK EMBL:AF027820
EMBL:D43785 PIR:T38270 RefSeq:NP_593187.1 PDB:3H0G PDBsum:3H0G
ProteinModelPortal:Q09191 SMR:Q09191 IntAct:Q09191
MINT:MINT-1214324 STRING:Q09191 EnsemblFungi:SPAC23C4.15.1
GeneID:2541910 KEGG:spo:SPAC23C4.15 OrthoDB:EOG40CMS4
EvolutionaryTrace:Q09191 NextBio:20802997 Uniprot:Q09191
Length = 210
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 64/170 (37%), Positives = 101/170 (59%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAK---FGENMKREDLVIN 57
M+ ++ I R+FR +T Q++ DRGY V E++++ +QF A G N+ R L
Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60
Query: 58 KALRNDSSD-QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
NDS+ IY+ F E VG+K M+T+ + + N IL+ ++TP A I
Sbjct: 61 AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIAT 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ +F +E FQE++L+VNI H LVP+H +L+ +EKK LL RY ++ETQ+
Sbjct: 121 VTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQL 170
>SGD|S000000358 [details] [associations]
symbol:RPB5 "RNA polymerase subunit ABC27" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI;IMP]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IMP] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IDA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0001054 "RNA polymerase I activity"
evidence=IC] [GO:0001055 "RNA polymerase II activity" evidence=IDA]
[GO:0001056 "RNA polymerase III activity" evidence=IDA] [GO:0042797
"tRNA transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 SGD:S000000358 GO:GO:0003677
EMBL:BK006936 GO:GO:0006366 GO:GO:0006360 EMBL:X71329 EMBL:S59774
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
GO:GO:0005665 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 GeneTree:ENSGT00390000013841
OMA:DEAETYK OrthoDB:EOG40CMS4 EMBL:X53287 EMBL:Z36023 PIR:A34588
RefSeq:NP_009712.1 PDB:1DZF PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1DZF PDBsum:1I3Q
PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9
PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO
PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH
PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77
PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J
PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ
PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z
PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ
PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL
PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V
PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A
PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1
PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16
PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R
PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
PDBsum:4BBS ProteinModelPortal:P20434 SMR:P20434 DIP:DIP-71N
IntAct:P20434 MINT:MINT-530046 STRING:P20434 PaxDb:P20434
PeptideAtlas:P20434 EnsemblFungi:YBR154C GeneID:852451
KEGG:sce:YBR154C CYGD:YBR154c Reactome:REACT_87991
EvolutionaryTrace:P20434 NextBio:971369 Genevestigator:P20434
GermOnline:YBR154C GO:GO:0042797 Uniprot:P20434
Length = 215
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 67/172 (38%), Positives = 99/172 (57%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
++ I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANP 64
Query: 64 SSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A +
Sbjct: 65 TEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLV 124
Query: 115 QEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I +E F EA L+VNI H LVP+H L+++EK+ LLKRY +KE+Q+
Sbjct: 125 PSIPPAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQL 175
>TAIR|locus:2040257 [details] [associations]
symbol:RPB5D ""RNA polymerase II fifth largest subunit,
D"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC005662
GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
ProtClustDB:PLN03111 EMBL:AY078926 IPI:IPI00521699 PIR:E84840
RefSeq:NP_181665.1 UniGene:At.42846 ProteinModelPortal:Q9ZVB9
SMR:Q9ZVB9 STRING:Q9ZVB9 PaxDb:Q9ZVB9 PRIDE:Q9ZVB9
EnsemblPlants:AT2G41340.1 GeneID:818732 KEGG:ath:AT2G41340
TAIR:At2g41340 InParanoid:Q9ZVB9 OMA:YLARRTT PhylomeDB:Q9ZVB9
ArrayExpress:Q9ZVB9 Genevestigator:Q9ZVB9 Uniprot:Q9ZVB9
Length = 218
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 67/164 (40%), Positives = 103/164 (62%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S E + + RRT M+MLRDRGY V D +IN+S +QF A +GE+ + L I+ R D
Sbjct: 17 SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKS-ENVFRAILVVQQNLTPFARTCIQEISAKFH 122
SS +I V F V V M+ + S EN+ ILV+Q ++T A ++ S F
Sbjct: 77 SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FK 134
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E+F+ +LLVN+ +HVL P+HQVL ++EK++LLK+++++E Q+
Sbjct: 135 VELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQL 178
>TAIR|locus:2080650 [details] [associations]
symbol:NRPE5 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IPI] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
EMBL:CP002686 GO:GO:0003677 GO:GO:0006351 EMBL:AL138655
GO:GO:0003899 GO:GO:0000419 KO:K03013 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434 ProtClustDB:PLN03111
EMBL:BT005410 EMBL:AK118958 IPI:IPI00518077 PIR:T47768
RefSeq:NP_191267.1 UniGene:At.28133 ProteinModelPortal:Q9M1J2
SMR:Q9M1J2 DIP:DIP-48680N STRING:Q9M1J2 PRIDE:Q9M1J2
EnsemblPlants:AT3G57080.1 GeneID:824875 KEGG:ath:AT3G57080
TAIR:At3g57080 InParanoid:Q9M1J2 OMA:TVVKVIY PhylomeDB:Q9M1J2
ArrayExpress:Q9M1J2 Genevestigator:Q9M1J2 Uniprot:Q9M1J2
Length = 222
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 65/165 (39%), Positives = 99/165 (60%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
LS EE R + RR +QMLRDRGY V D +IN+S F +GE + L I+ R+
Sbjct: 20 LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYT-NRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
DS+ ++ + F V V +++ + + E + ILV+Q ++T A I+ S F
Sbjct: 80 DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--F 137
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E+FQ +LLVNI +H L P+HQVL +EEK TLLK+++++E Q+
Sbjct: 138 KVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQL 182
>ASPGD|ASPL0000062840 [details] [associations]
symbol:AN0752 species:162425 "Emericella nidulans"
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001055 "RNA polymerase
II activity" evidence=IEA] [GO:0001056 "RNA polymerase III
activity" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
EMBL:AACD01000012 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 OrthoDB:EOG40CMS4
RefSeq:XP_658356.1 ProteinModelPortal:Q5BFC8 SMR:Q5BFC8
STRING:Q5BFC8 EnsemblFungi:CADANIAT00001913 GeneID:2876528
KEGG:ani:AN0752.2 OMA:EQDLLVN Uniprot:Q5BFC8
Length = 235
Score = 178 (67.7 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 38/100 (38%), Positives = 60/100 (60%)
Query: 68 IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
IY+ F PD+ +G K ++T+ + + N I + + ++P A + I + E F
Sbjct: 97 IYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFITKTPISPSAVRLLSGIPGRI-CEHF 155
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
QE +LLVNI H LVP+H +L+ EEK LL+RY +KE+Q+
Sbjct: 156 QEQDLLVNITRHELVPKHVLLSPEEKSKLLQRYRLKESQL 195
Score = 85 (35.0 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF-GEN--MKREDLVI 56
++ E R++R RTV +ML+DRGY V + E+ + ++F K+ GE RE L I
Sbjct: 12 AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKI 67
>TAIR|locus:2096971 [details] [associations]
symbol:RPB5E ""RNA polymerase II fifth largest subunit,
E"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351 EMBL:AL138656
GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
ProtClustDB:PLN03111 IPI:IPI00548152 PIR:T47608 RefSeq:NP_191013.1
UniGene:At.1460 UniGene:At.71274 ProteinModelPortal:Q9M1H8
SMR:Q9M1H8 STRING:Q9M1H8 EnsemblPlants:AT3G54490.1 GeneID:824614
KEGG:ath:AT3G54490 TAIR:At3g54490 InParanoid:Q9M1H8 OMA:SKMNHFA
PhylomeDB:Q9M1H8 Genevestigator:Q9M1H8 Uniprot:Q9M1H8
Length = 233
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 55/162 (33%), Positives = 93/162 (57%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E KR + R T +MLRDRGY V + E++++ +F + FGE + E L I LR+D
Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENV--FRAILVVQQNLTPFARTCIQEISAKFHLE 124
+I V F + + VK+++ ++ S NV ILV+Q + FA+ + F +E
Sbjct: 95 KILVVFMGTEPITVKSVRALHIQI-SNNVGLHAMILVLQSKMNHFAQKALTTFP--FTVE 151
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
F +LLVNI +H+ P+ ++L EEK+ LL+++ +++ Q+
Sbjct: 152 TFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQL 193
>TAIR|locus:2089338 [details] [associations]
symbol:AT3G16680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
ProDom:PD005155 GO:GO:0005634 EMBL:CP002686 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
SUPFAM:SSF53036 IPI:IPI00538237 RefSeq:NP_188290.1 UniGene:At.53338
ProteinModelPortal:F4J2R9 SMR:F4J2R9 EnsemblPlants:AT3G16680.1
GeneID:820920 KEGG:ath:AT3G16680 Uniprot:F4J2R9
Length = 87
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 45/79 (56%), Positives = 58/79 (73%)
Query: 83 MKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK---FHLEVFQEAELLVNIKEHV 139
MK Y +++KS NVFRAILVVQ ++ F+R + + A FH+EVFQE EL+VN+KEHV
Sbjct: 1 MKKYIDQLKSANVFRAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHV 59
Query: 140 LVPEHQVLTNEEKKTLLKR 158
VPEHQ LT EEK+ L+R
Sbjct: 60 FVPEHQALTTEEKQKFLER 78
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 170 170 0.00086 108 3 10 22 0.49 31
31 0.47 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 572 (61 KB)
Total size of DFA: 179 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.59u 0.17s 25.76t Elapsed: 00:00:01
Total cpu time: 25.59u 0.17s 25.76t Elapsed: 00:00:01
Start: Fri May 10 00:15:32 2013 End: Fri May 10 00:15:33 2013