Query 030846
Match_columns 170
No_of_seqs 135 out of 340
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 08:17:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030846.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030846hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dzfa1 c.52.3.1 (A:5-143) Euk 100.0 5.1E-47 3.7E-51 292.9 7.8 130 4-134 1-139 (139)
2 d1eika_ d.78.1.1 (A:) RNA poly 99.5 3.4E-15 2.5E-19 103.6 3.5 40 131-170 1-40 (77)
3 d1dzfa2 d.78.1.1 (A:144-215) E 99.3 2.8E-13 2E-17 92.7 2.4 36 135-170 1-36 (72)
4 d1hmja_ d.78.1.1 (A:) RNA poly 98.5 1.9E-08 1.4E-12 67.5 2.0 29 142-170 1-29 (68)
5 d7reqa2 c.23.6.1 (A:561-728) M 82.9 0.98 7.2E-05 33.2 5.4 88 13-117 52-139 (168)
6 d2odgc1 a.140.1.1 (C:2-47) Inn 73.8 1 7.6E-05 26.7 2.4 20 144-163 3-22 (46)
7 d3bula2 c.23.6.1 (A:741-896) M 72.6 3.1 0.00023 29.8 5.5 77 16-109 24-100 (156)
8 d1y88a2 c.52.1.30 (A:3-127) Hy 69.7 3.2 0.00023 28.2 4.7 40 77-116 56-100 (125)
9 d1wd5a_ c.61.1.1 (A:) Putative 63.7 17 0.0013 26.1 8.2 81 74-160 127-207 (208)
10 d1kida_ c.8.5.1 (A:) GroEL, A 54.2 14 0.001 27.2 6.2 44 69-114 36-79 (193)
11 d1sjpa2 c.8.5.1 (A:189-372) Gr 51.2 22 0.0016 25.8 6.8 44 69-114 28-71 (184)
12 d1nn4a_ c.121.1.1 (A:) Alterna 44.6 10 0.00075 27.4 3.9 23 84-106 61-83 (159)
13 d2p5ka1 a.4.5.3 (A:2-64) Argin 37.9 4.7 0.00034 25.0 0.8 25 17-41 23-47 (63)
14 d1srva_ c.8.5.1 (A:) GroEL, A 37.7 50 0.0037 22.9 6.7 44 69-114 28-71 (145)
15 d1msza_ d.68.7.1 (A:) SmuBP-2 34.9 28 0.002 20.9 4.3 48 79-129 1-49 (62)
16 d1ioka2 c.8.5.1 (A:191-366) Gr 34.0 22 0.0016 25.7 4.2 44 69-114 29-72 (176)
17 d1pq4a_ c.92.2.2 (A:) Periplas 33.5 77 0.0056 23.5 7.8 83 10-116 176-258 (289)
18 d1k1va_ a.37.1.1 (A:) Mafg {Mo 31.3 22 0.0016 20.2 3.0 20 4-27 22-41 (41)
19 d1ccwa_ c.23.6.1 (A:) Glutamat 30.4 13 0.00092 25.7 2.2 74 16-106 21-94 (137)
20 d1o1xa_ c.121.1.1 (A:) Putativ 26.5 42 0.0031 23.4 4.6 20 12-31 14-33 (145)
21 d1jala1 c.37.1.8 (A:1-278) Ych 22.4 5.3 0.00039 30.3 -1.3 22 147-168 247-268 (278)
22 d1g55a_ c.66.1.26 (A:) DNMT2 { 22.3 15 0.0011 27.5 1.3 44 13-62 127-170 (343)
23 d1dkgd1 c.55.1.1 (D:3-185) Hea 21.2 55 0.004 22.4 4.4 43 81-123 119-161 (183)
24 d1pyya2 d.11.1.1 (A:693-750) P 20.9 23 0.0017 20.7 1.8 23 141-163 4-26 (58)
25 d1dhsa_ c.31.1.1 (A:) Deoxyhyp 20.3 18 0.0013 29.4 1.5 118 7-147 47-169 (361)
No 1
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=5.1e-47 Score=292.87 Aligned_cols=130 Identities=36% Similarity=0.585 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCC---CCCcceEEEeecCCC------CCCcEEEEeCC
Q 030846 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINKALRND------SSDQIYVFFPD 74 (170)
Q Consensus 4 ~~~e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~---~~r~~L~~~~~~~~d------p~~~i~VfF~~ 74 (170)
+++|++||||+||||+|||+||||.|+++|+++|+++|+++||++ ++|+.|++.+.+.++ ++++||||||+
T Consensus 1 ~d~e~~rlfr~rrTv~EMl~DRGY~V~~~el~~s~~~F~~~~~~~~~~p~r~~l~~~~~~~~~~~~k~~~~~~I~V~F~~ 80 (139)
T d1dzfa1 1 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCD 80 (139)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHHHHHHHHBCTTSCBCGGGTCEEECBCHHHHHHCTTCCCEEEEECS
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcCCHHHHcCCHHHHHHHHccccCCcCHHHhcccCCCchhhhhccCCCCeEEEEECC
Confidence 478999999999999999999999999999999999999999987 568999999987765 45679999999
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhcccccceeeeeccccccc
Q 030846 75 EQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVN 134 (170)
Q Consensus 75 ~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F~e~ELl~n 134 (170)
+++||+|+||.|+++|+++|++|||||+|++|||+|++++.++++ ++||+|+|+|||||
T Consensus 81 ~~kvgvk~ir~~~~~m~~~~~~r~IlV~q~~iTp~Ak~~i~~~~~-~~iE~F~e~eLLVN 139 (139)
T d1dzfa1 81 EPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPP-ATIETFNEAALVVN 139 (139)
T ss_dssp SSEECHHHHHHHHHHHHHTTCSEEEEEESSEECHHHHTTTTSSTT-CEEEEEEHHHHSSC
T ss_pred CCccCHHHHHHHHHHHHhcCCceEEEEECCCCCHHHHHHHHhccC-ceEEEechhhcccC
Confidence 999999999999999999999999999999999999999998875 79999999999998
No 2
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.50 E-value=3.4e-15 Score=103.60 Aligned_cols=40 Identities=33% Similarity=0.457 Sum_probs=38.5
Q ss_pred cccccccccccccccccCHHHHHHHHhhcCCCCCCCCCCC
Q 030846 131 LLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVSDKF 170 (170)
Q Consensus 131 Ll~ni~~H~lVP~h~~l~~eE~~~ll~~y~~~~~qlP~~~ 170 (170)
|.+||++|+|||+|++||+||++++|++|+++.+|||+|.
T Consensus 1 l~~NI~~H~lVPkH~il~~ee~~~~l~~~~i~~~qLP~I~ 40 (77)
T d1eika_ 1 MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIK 40 (77)
T ss_dssp CCCCCCSSSSCCEEEEECHHHHHHHHHHTTCCTTTSCCCB
T ss_pred CCccccccccCCCeEEcCHHHHHHHHHHhcCCHHHCCeec
Confidence 6799999999999999999999999999999999999984
No 3
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.30 E-value=2.8e-13 Score=92.68 Aligned_cols=36 Identities=47% Similarity=0.731 Sum_probs=34.7
Q ss_pred cccccccccccccCHHHHHHHHhhcCCCCCCCCCCC
Q 030846 135 IKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVSDKF 170 (170)
Q Consensus 135 i~~H~lVP~h~~l~~eE~~~ll~~y~~~~~qlP~~~ 170 (170)
||+|+|||+|++||+||++++|++|+++.+|||.|.
T Consensus 1 It~H~lVPkH~~l~~eE~~~il~~y~i~~~qLP~I~ 36 (72)
T d1dzfa2 1 ITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQ 36 (72)
T ss_dssp GGGSTTSCEEEECCHHHHHHHHHHTTCCGGGSCEEC
T ss_pred CCcCccCCCeEEcCHHHHHHHHHHhCCCHhHCCeec
Confidence 799999999999999999999999999999999874
No 4
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.48 E-value=1.9e-08 Score=67.47 Aligned_cols=29 Identities=34% Similarity=0.735 Sum_probs=28.0
Q ss_pred ccccccCHHHHHHHHhhcCCCCCCCCCCC
Q 030846 142 PEHQVLTNEEKKTLLKRYTVKETQVSDKF 170 (170)
Q Consensus 142 P~h~~l~~eE~~~ll~~y~~~~~qlP~~~ 170 (170)
|+|++||+||++++|++|+++.+|||+|.
T Consensus 1 PkH~il~~eE~~~ll~~y~i~~~qLP~I~ 29 (68)
T d1hmja_ 1 PKHEIVPKEEVEEILKRYNIKIQQLPKIY 29 (68)
T ss_pred CCCEECCHHHHHHHHHHhCCCHHHCCccc
Confidence 99999999999999999999999999984
No 5
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=82.87 E-value=0.98 Score=33.23 Aligned_cols=88 Identities=8% Similarity=-0.007 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhh
Q 030846 13 RIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKS 92 (170)
Q Consensus 13 r~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~ 92 (170)
+-++.+..++++.||.|..--...|.++|.+..-+. +-+-+.++. -....+..++.+++.+.+
T Consensus 52 ~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~-~advI~iSs----------------~~~~~~~~~~~l~~~L~~ 114 (168)
T d7reqa2 52 RGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEA-DVHVVGVSS----------------LAGGHLTLVPALRKELDK 114 (168)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHH-TCSEEEEEE----------------CSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcceecCCCcCcHHHHHHHHHcc-CCCEEEEec----------------CcccchHHHHHHHHHHHh
Confidence 456788899999999998877888999999876443 122233322 223577889999999999
Q ss_pred cCCCeEEEEEcCCCCHHHHHHHHhc
Q 030846 93 ENVFRAILVVQQNLTPFARTCIQEI 117 (170)
Q Consensus 93 e~~~~~IiV~q~~lt~~Ar~~~~~~ 117 (170)
.+....++++.+.+.+.-...+.+.
T Consensus 115 ~g~~~v~VivGG~ip~~d~~~l~~~ 139 (168)
T d7reqa2 115 LGRPDILITVGGVIPEQDFDELRKD 139 (168)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHH
T ss_pred cCCCCeEEEEeCCCCHHHHHHHHhC
Confidence 9988887787777666555555544
No 6
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.78 E-value=1 Score=26.70 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.6
Q ss_pred ccccCHHHHHHHHhhcCCCC
Q 030846 144 HQVLTNEEKKTLLKRYTVKE 163 (170)
Q Consensus 144 h~~l~~eE~~~ll~~y~~~~ 163 (170)
.-.||++|-.++|.+|+|+-
T Consensus 3 y~~lSd~El~~lL~~y~I~H 22 (46)
T d2odgc1 3 YADLSDTELTTLLRRYNIPH 22 (46)
T ss_dssp GGGSCHHHHHHHHHHTTCCC
T ss_pred hhhhcHHHHHHHHHHhCCCC
Confidence 35799999999999999973
No 7
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=72.61 E-value=3.1 Score=29.80 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhhcCC
Q 030846 16 RTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENV 95 (170)
Q Consensus 16 rTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~e~~ 95 (170)
+-+.-||++.||.|-.-=.+.+.++|.+..-+. +.+-+.+++. -.-.+..++.+++.+.+.+.
T Consensus 24 ~iv~~~l~~~G~~Vi~LG~~~p~e~~~~~~~~~-~~d~i~lS~l----------------~~~~~~~~~~~~~~l~~~g~ 86 (156)
T d3bula2 24 NIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEV-NADLIGLSGL----------------ITPSLDEMVNVAKEMERQGF 86 (156)
T ss_dssp HHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHH-TCSEEEEECC----------------STHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhh-CCCEEEEecc----------------cccchHHHHHHHHHHHhccc
Confidence 456779999999998877788999998864322 2333444442 23477889999999999999
Q ss_pred CeEEEEEcCCCCHH
Q 030846 96 FRAILVVQQNLTPF 109 (170)
Q Consensus 96 ~~~IiV~q~~lt~~ 109 (170)
+.-|+|-...+|..
T Consensus 87 ~~~vivGG~~~~~~ 100 (156)
T d3bula2 87 TIPLLIGGATTSKA 100 (156)
T ss_dssp CSCEEEESTTCCHH
T ss_pred cceEEEecccccch
Confidence 87777777677653
No 8
>d1y88a2 c.52.1.30 (A:3-127) Hypothetical protein AF1548, N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=69.68 E-value=3.2 Score=28.19 Aligned_cols=40 Identities=5% Similarity=-0.030 Sum_probs=29.7
Q ss_pred ccchhHHHHH-----HHHHhhcCCCeEEEEEcCCCCHHHHHHHHh
Q 030846 77 KVGVKTMKTY-----TNRMKSENVFRAILVVQQNLTPFARTCIQE 116 (170)
Q Consensus 77 ~vgvk~Ir~~-----~~~~~~e~~~~~IiV~q~~lt~~Ar~~~~~ 116 (170)
.+++..++.+ +..+...+.+++|+|+-++.|+.|++....
T Consensus 56 ~~~~~~v~~~~~~~~~~~~~~~~~~~~iiVTt~~Ft~~A~~~A~~ 100 (125)
T d1y88a2 56 PVYTGLKEAMYTYARFLDVEKHGFTQPWIFTNTKFSEEAKKYAGC 100 (125)
T ss_dssp SCEECHHHHHHHHHHHHHHGGGTCSEEEEECSSEECHHHHHHHHH
T ss_pred CCCCChhhHHHHHHhhhhhhhcCCCeEEEEECCCCCHHHHHHHHH
Confidence 3555555544 344567899999999999999999876553
No 9
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426 (TTHA1462) {Thermus thermophilus [TaxId: 274]}
Probab=63.69 E-value=17 Score=26.13 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhcccccceeeeeccccccccccccccccccccCHHHHH
Q 030846 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKK 153 (170)
Q Consensus 74 ~~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F~e~ELl~ni~~H~lVP~h~~l~~eE~~ 153 (170)
++---+=.|++..++.+.+.|..+.++++.- .++.+.+.++... .+-+|...+-.+.+-.|.- .-+.||++|..
T Consensus 127 DD~I~TG~T~~aa~~~L~~~ga~~V~~a~~v-~~~~~~~~l~~~~---d~v~~~~p~~f~~v~~~y~--~f~~lsd~~v~ 200 (208)
T d1wd5a_ 127 DDGVATGASMEAALSVVFQEGPRRVVVAVPV-ASPEAVERLKARA---EVVALSVPQDFAAVGAYYL--DFGEVTDEDVE 200 (208)
T ss_dssp CSCBSSCHHHHHHHHHHHTTCCSEEEEEEEE-BCHHHHHHHHTTS---EEEEEECCTTCCCGGGGBS--CCCCCCHHHHH
T ss_pred cchhhhhHHHHHHHHHHHhcCCCEEEEeecc-CChHHHHhhccCC---CEEEECCCchhhhhhhhhC--CCCCCCHHHHH
Confidence 3333345899999999999999988776543 4566666665443 2223444443444554432 34689999999
Q ss_pred HHHhhcC
Q 030846 154 TLLKRYT 160 (170)
Q Consensus 154 ~ll~~y~ 160 (170)
++|++|.
T Consensus 201 ~~L~~~~ 207 (208)
T d1wd5a_ 201 AILLEWA 207 (208)
T ss_dssp HHHHTTC
T ss_pred HHHHHhc
Confidence 9999984
No 10
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}
Probab=54.21 E-value=14 Score=27.20 Aligned_cols=44 Identities=9% Similarity=0.333 Sum_probs=31.0
Q ss_pred EEEeCCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHH
Q 030846 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114 (170)
Q Consensus 69 ~VfF~~~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~ 114 (170)
+|+.++..--.++.|--+.+.+.++| +-++|.-..+...|.+++
T Consensus 36 ~ILitd~kI~~~~~i~p~Le~~~~~~--~pLlIIA~di~~~aL~~L 79 (193)
T d1kida_ 36 FILLADKKISNIREMLPVLEAVAKAG--KPLLIIAEDVEGEALATL 79 (193)
T ss_dssp EEEEBSSEECCHHHHHHHHHHHHHHT--CCEEEEESEECHHHHHHH
T ss_pred EEEEEcCCcccHHHHHHHHHHHHhhC--CcEEEEeccccHHHHHHH
Confidence 77777776567888888888887666 345555677777776554
No 11
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Probab=51.17 E-value=22 Score=25.75 Aligned_cols=44 Identities=11% Similarity=0.251 Sum_probs=29.4
Q ss_pred EEEeCCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHH
Q 030846 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114 (170)
Q Consensus 69 ~VfF~~~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~ 114 (170)
+|+.++..--+++.|--+.+.+.+++-. ++|+-..+.+.|.+.+
T Consensus 28 ~ili~d~ki~~~~~i~p~Le~~~~~~rP--LlIIA~di~~~aL~~L 71 (184)
T d1sjpa2 28 YILLVSSKVSTVKDLLPLLEKVIGAGKP--LLIIAEDVEGEALSTL 71 (184)
T ss_dssp EEEEESSCBCCSTTTHHHHHHHHTTTCC--EEEEESCBCHHHHHHH
T ss_pred EEEEecCccCcHHHHHHHHHHhhccCCc--EEEEcchhhHHHHHHH
Confidence 6666666656778888888877766643 4455566777766554
No 12
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}
Probab=44.63 E-value=10 Score=27.36 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=16.9
Q ss_pred HHHHHHHhhcCCCeEEEEEcCCC
Q 030846 84 KTYTNRMKSENVFRAILVVQQNL 106 (170)
Q Consensus 84 r~~~~~~~~e~~~~~IiV~q~~l 106 (170)
...++.+.+....+||+|+..++
T Consensus 61 ~~va~~v~~~~~~~GIliCGtG~ 83 (159)
T d1nn4a_ 61 SQVALAVAGGEVDGGILICGTGV 83 (159)
T ss_dssp HHHHHHHHTTSSSEEEEEESSSH
T ss_pred HHHHHHHHhccceeEEEecCCch
Confidence 45556667777888888888775
No 13
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=37.94 E-value=4.7 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=20.3
Q ss_pred HHHHHhcCCCCCCChhhhccCHHHH
Q 030846 17 TVMQMLRDRGYFVGDFEINMSKEQF 41 (170)
Q Consensus 17 Tv~eMl~DRGY~v~~~e~~~s~~~F 41 (170)
-+.+.|.++||.|+++.+.-++.+.
T Consensus 23 eL~~~L~~~G~~vTQaTlSRDL~eL 47 (63)
T d2p5ka1 23 ELVDMLKQDGYKVTQATVSRDIKEL 47 (63)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeeHHHHHHHHHHh
Confidence 4678999999999999887666555
No 14
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]}
Probab=37.66 E-value=50 Score=22.88 Aligned_cols=44 Identities=7% Similarity=0.308 Sum_probs=30.4
Q ss_pred EEEeCCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHH
Q 030846 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114 (170)
Q Consensus 69 ~VfF~~~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~ 114 (170)
+|..++..--+++.|--+.+...+++ |-++|.-..+.+.|-.++
T Consensus 28 ~ILi~d~kI~~~~~ilp~Le~~~~~~--rPLlIIA~di~~eaL~~L 71 (145)
T d1srva_ 28 FILIVEKKVSNVRELLPILEQVAQTG--KPLLIIAEDVEGEALATL 71 (145)
T ss_dssp EEEEESSEECCHHHHHHHHHHHHTTT--CCEEEEESEECHHHHHHH
T ss_pred eeeecccccccHHHHHHHHHHHHHhC--CcEEEEeCccCHHHHHHH
Confidence 66667666567788888888777655 345555677778776655
No 15
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.90 E-value=28 Score=20.87 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHh-hcCCCeEEEEEcCCCCHHHHHHHHhcccccceeeeecc
Q 030846 79 GVKTMKTYTNRMK-SENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEA 129 (170)
Q Consensus 79 gvk~Ir~~~~~~~-~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F~e~ 129 (170)
|+..++..+.... ..+ .. +..+..||+.-|+.+.+++..+.+......
T Consensus 1 ~~~~~~~~i~~Fv~s~~-~~--~~f~p~m~~~~R~~vH~lA~~~gl~s~S~G 49 (62)
T d1msza_ 1 GVDHFRAMIVEFMASKK-MQ--LEFPPSLNSHDRLRVHQIAEEHGLRHDSSG 49 (62)
T ss_dssp CCHHHHHHHHHHHHHTC-SE--EEECTTCCSHHHHHHHHHHHHTTEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCC-CE--EEeCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 5667777666653 333 22 567777999999999999877777665443
No 16
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]}
Probab=33.96 E-value=22 Score=25.66 Aligned_cols=44 Identities=11% Similarity=0.319 Sum_probs=15.5
Q ss_pred EEEeCCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHH
Q 030846 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114 (170)
Q Consensus 69 ~VfF~~~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~ 114 (170)
+|+.++..--+++.|--+.+.+.+.+ +-++|.-..+.+.|...+
T Consensus 29 ~ILi~d~kI~~~~~i~p~Le~~~~~~--~PLlIIA~di~~~aL~~L 72 (176)
T d1ioka2 29 YILLHEKKLSSLQPMVPLLESVIQSQ--KPLLIVAEDVEGEALATL 72 (176)
T ss_dssp EEEECSSCBCCCCC-----------C--CCCEEEESCBC-------
T ss_pred EEEEEccccCcHHHHHHHHHHHHhcC--CcEEEEecCCCHHHHHHH
Confidence 66667666556777777777766554 334444556666654443
No 17
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=33.47 E-value=77 Score=23.49 Aligned_cols=83 Identities=18% Similarity=0.112 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHH
Q 030846 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNR 89 (170)
Q Consensus 10 rl~r~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~ 89 (170)
.|-...+..+.=+.+|.|.+... .+.-|.++||-. .... . ..+...+.+.|+.+.+.
T Consensus 176 ~l~~~~~~~l~~~~~~~~v~~H~----a~~Yf~~~ygl~-------~~~~-----------~-~~~~eps~~~l~~l~~~ 232 (289)
T d1pq4a_ 176 RLNQELGQILQPLPQRKFIVFHP----SWAYFARDYNLV-------QIPI-----------E-VEGQEPSAQELKQLIDT 232 (289)
T ss_dssp HHHHHHHHHHTTCSCCEEEESSC----CCHHHHHHTTCE-------EEES-----------C-BTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCceeeecc----cHHHHHHhcCce-------eeee-----------e-ccCCCCCHHHHHHHHHH
Confidence 33344444445566777776532 466788888643 2211 1 12335789999999999
Q ss_pred HhhcCCCeEEEEEcCCCCHHHHHHHHh
Q 030846 90 MKSENVFRAILVVQQNLTPFARTCIQE 116 (170)
Q Consensus 90 ~~~e~~~~~IiV~q~~lt~~Ar~~~~~ 116 (170)
+++.++. +|++=.+.-+..+++..++
T Consensus 233 ik~~~i~-~if~e~q~~~~~~~~la~~ 258 (289)
T d1pq4a_ 233 AKENNLT-MVFGETQFSTKSSEAIAAE 258 (289)
T ss_dssp HHTTTCC-EEEEETTSCCHHHHHHHHH
T ss_pred HHHcCCC-EEEEcCCCCcHHHHHHHHH
Confidence 9999998 5556555555666544344
No 18
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.27 E-value=22 Score=20.17 Aligned_cols=20 Identities=55% Similarity=0.846 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCC
Q 030846 4 SDEEIKRLFRIRRTVMQMLRDRGY 27 (170)
Q Consensus 4 ~~~e~~rl~r~rrTv~eMl~DRGY 27 (170)
+..++.+|=.-|||+ +.|||
T Consensus 22 ~keev~~lKqrRRTL----KNRGY 41 (41)
T d1k1va_ 22 SKEEIIQLKQRRRTL----KNRGY 41 (41)
T ss_dssp CHHHHHHHHHHHHHH----TTSCC
T ss_pred CHHHHHHHHHHHHhh----hcCCC
Confidence 467888998899984 67998
No 19
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=30.41 E-value=13 Score=25.70 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=48.2
Q ss_pred HHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhhcCC
Q 030846 16 RTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENV 95 (170)
Q Consensus 16 rTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~e~~ 95 (170)
+-+..+|++.||.|..-=.+.+.++|.+..-+. +.+-+.+++... -....++.+++.+.+.+.
T Consensus 21 ~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~-~~d~v~lS~~~~----------------~~~~~~~~~~~~l~~~~~ 83 (137)
T d1ccwa_ 21 KILDHAFTNAGFNVVNIGVLSPQELFIKAAIET-KADAILVSSLYG----------------QGEIDCKGLRQKCDEAGL 83 (137)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH-TCSEEEEEECSS----------------THHHHHTTHHHHHHHTTC
T ss_pred HHHHHHHHHCCCeEEecccccCHHHHHHHHHhc-CCCEEEEeeccc----------------cchHHHHHHHHHHHHhcc
Confidence 456679999999998866678999998854322 133455544311 235677788888887776
Q ss_pred CeEEEEEcCCC
Q 030846 96 FRAILVVQQNL 106 (170)
Q Consensus 96 ~~~IiV~q~~l 106 (170)
...-+++.+.+
T Consensus 84 ~~i~iivGG~~ 94 (137)
T d1ccwa_ 84 EGILLYVGGNI 94 (137)
T ss_dssp TTCEEEEEESC
T ss_pred CCCEEEEeCCc
Confidence 55444555554
No 20
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=26.47 E-value=42 Score=23.38 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCCCCCCh
Q 030846 12 FRIRRTVMQMLRDRGYFVGD 31 (170)
Q Consensus 12 ~r~rrTv~eMl~DRGY~v~~ 31 (170)
|....++.+.|+++||.|.+
T Consensus 14 ~~lK~~l~~~L~~~g~~v~D 33 (145)
T d1o1xa_ 14 FELKEKVKNYLLGKGIEVED 33 (145)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 44567788888888888866
No 21
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=22.35 E-value=5.3 Score=30.27 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.2
Q ss_pred cCHHHHHHHHhhcCCCCCCCCC
Q 030846 147 LTNEEKKTLLKRYTVKETQVSD 168 (170)
Q Consensus 147 l~~eE~~~ll~~y~~~~~qlP~ 168 (170)
|+++|+.+.|+.|+++++.|.+
T Consensus 247 L~~eE~~efL~~~gl~e~gl~k 268 (278)
T d1jala1 247 LDDEEKVEFLQDLGIEEPGLNR 268 (278)
T ss_dssp SCSSTTHHHHTTSSCCSCTTHH
T ss_pred CCHHHHHHHHHHcCCChhhHHH
Confidence 6788899999999999988865
No 22
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.29 E-value=15 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCC
Q 030846 13 RIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62 (170)
Q Consensus 13 r~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~ 62 (170)
+.+.++.+.|.+-||.|....++ ...||-.-.|+++.+.+.+.+
T Consensus 127 ~~~~~i~~~l~~~GY~v~~~vln------a~dyGvPQ~R~Rvfivg~r~~ 170 (343)
T d1g55a_ 127 STRDLLIQTIENCGFQYQEFLLS------PTSLGIPNSRLRYFLIAKLQS 170 (343)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEC------GGGGTCSCCCCEEEEEEEESS
T ss_pred hhhHHHHhhhhccccccceeeee------ccccCCcccceeEEEEEEeCC
Confidence 45778899999999999775554 234788888999998887654
No 23
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Probab=21.16 E-value=55 Score=22.44 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhcccccce
Q 030846 81 KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123 (170)
Q Consensus 81 k~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~i 123 (170)
+.|+..++......+.+++|=++..-++.+|+++.+....-.+
T Consensus 119 ~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~ 161 (183)
T d1dkgd1 119 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL 161 (183)
T ss_dssp HHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 3344455555567789999999999999999999887643344
No 24
>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.86 E-value=23 Score=20.68 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.9
Q ss_pred cccccccCHHHHHHHHhhcCCCC
Q 030846 141 VPEHQVLTNEEKKTLLKRYTVKE 163 (170)
Q Consensus 141 VP~h~~l~~eE~~~ll~~y~~~~ 163 (170)
||.-.=+|.+|+.++|+.++++.
T Consensus 4 vPdl~G~s~~~A~~~l~~~gl~v 26 (58)
T d1pyya2 4 VPDMYGWTKETAETLAKWLNIEL 26 (58)
T ss_dssp CCCCTTCBHHHHHHHHHHTTCEE
T ss_pred CCCcCCCcHHHHHHHHHHcCCEE
Confidence 89999999999999999998863
No 25
>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.34 E-value=18 Score=29.38 Aligned_cols=118 Identities=11% Similarity=0.109 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHH
Q 030846 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTY 86 (170)
Q Consensus 7 e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~ 86 (170)
..++|.++.+.+-+|++||...+..++-+ . .+-.. ...+..+.-||.+-...+...-+|.+
T Consensus 47 qA~~Lg~A~~i~~~Mi~~~~~~~~~~~~~-~-~~~~~-----------------~~~~~~~ctIfLt~agam~saGlr~~ 107 (361)
T d1dhsa_ 47 QATNFGRAVQQVNAMIEKKLEPLSQDEDQ-H-ADLTQ-----------------SRRPLTSCTIFLGYTSNLISSGIRET 107 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC------------------------------------CSSEEEEEECTHHHHSTHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhccCCcccccc-c-ccccc-----------------hhcccccceEEEecccccchhhHHHH
Confidence 45789999999999999997655443321 0 00000 01111122333333347777788999
Q ss_pred HHHHhhcCCCeEEEEEcCCCCHHHHHHHHhcccccceeeeecccc-----cccccccccccccccc
Q 030846 87 TNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAEL-----LVNIKEHVLVPEHQVL 147 (170)
Q Consensus 87 ~~~~~~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F~e~EL-----l~ni~~H~lVP~h~~l 147 (170)
+..|-++|.=.+|+.+.+.+.....+++ .+. +.-.|..+|- =+|=.--.++|+....
T Consensus 108 i~~LIr~g~Vd~IVtTga~lehDi~~~~---g~~-y~g~f~~dd~~Lr~~ginRIgdv~Ipee~~~ 169 (361)
T d1dhsa_ 108 IRYLVQHNMVDVLVTTAGGVEEDLIKCL---APT-YLGEFSLRGKELRENGINRIGNLLVPNENYC 169 (361)
T ss_dssp HHHHHHTTCCSEEEECHHHHHHHHHTTT---SCC-EECCTTCCHHHHHHTTEEEETTEEEETHHHH
T ss_pred HHHHHHcCCCCEEEecCCcchHHHHHHh---Ccc-ccCcccCChHHHhhcCcccccceeeCHHHHH
Confidence 9999999999999998877766554443 443 3444544321 2333344567755543
Done!