BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030847
         (170 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
           Thaliana Protein Containing Duf538 Domain
          Length = 170

 Score = 36.6 bits (83), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 39  DLLKARGLPAGLLPKEVKSYAL-YENGTLEVELQGPCFTKYENRVF--FESVFRANLSYG 95
           +LLK   LP G+ P +  +Y    E   L V +   C   Y++     F +    +L  G
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 96  SLTGVEGLSQEELFIWLPVKDIIVD 120
            LT VEG+ + ++ IW+ V  I  D
Sbjct: 116 KLTDVEGI-KTKVMIWVKVTSISTD 139


>pdb|4H3Y|A Chain A, Crystal Structure Of An Asymmetric Dimer Of A Trna
           (Guanine-(N(1)-)- Methyltransferase From Burkholderia
           Phymatum Bound To S-Adenosyl Homocystein In One
           Half-Site
 pdb|4H3Y|B Chain B, Crystal Structure Of An Asymmetric Dimer Of A Trna
           (Guanine-(N(1)-)- Methyltransferase From Burkholderia
           Phymatum Bound To S-Adenosyl Homocystein In One
           Half-Site
 pdb|4H3Z|A Chain A, Crystal Structure Of A Symmetric Dimer Of A Trna
           (Guanine-(N(1)-)- Methyltransferase From Burkholderia
           Phymatum Bound To S-Adenosyl Homocystein In Both
           Half-Sites
 pdb|4H3Z|B Chain B, Crystal Structure Of A Symmetric Dimer Of A Trna
           (Guanine-(N(1)-)- Methyltransferase From Burkholderia
           Phymatum Bound To S-Adenosyl Homocystein In Both
           Half-Sites
          Length = 276

 Score = 31.6 bits (70), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 64  GTLEVELQGPCFTKYENRVFFESVFRANLSYGSLTGVEGLSQEELFIWLPVKDIIVDD 121
           GTLE + QGP   +++    F  +FRA   +G  +      +  L  W P +D   D+
Sbjct: 10  GTLEAQTQGPGSMQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNP-RDFTTDN 66


>pdb|1S4N|A Chain A, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
           Kre2pMNT1P
 pdb|1S4N|B Chain B, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
           Kre2pMNT1P
 pdb|1S4O|A Chain A, Crystal Structure Of Yeast Alpha1,2-mannosyltransferase
           Kre2p/mnt1p: Binary Complex With Gdp/mn
 pdb|1S4O|B Chain B, Crystal Structure Of Yeast Alpha1,2-mannosyltransferase
           Kre2p/mnt1p: Binary Complex With Gdp/mn
 pdb|1S4P|A Chain A, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
           Kre2pMNT1P: Ternary Complex With GdpMN AND
           METHYL-Alpha-Mannoside Acceptor
 pdb|1S4P|B Chain B, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
           Kre2pMNT1P: Ternary Complex With GdpMN AND
           METHYL-Alpha-Mannoside Acceptor
          Length = 348

 Score = 26.2 bits (56), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 49  GLLPKEVKSYALYENGTLEVELQGPCFTKY 78
           G+LPKE  SY  + N T   E++    TKY
Sbjct: 89  GILPKEHWSYPEWINQTKAAEIRADAATKY 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,727,937
Number of Sequences: 62578
Number of extensions: 182588
Number of successful extensions: 295
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 6
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)