BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030847
         (170 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
           GN=At5g01610 PE=1 SV=1
          Length = 170

 Score = 36.2 bits (82), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 39  DLLKARGLPAGLLPKEVKSYAL-YENGTLEVELQGPCFTKYENRVF--FESVFRANLSYG 95
           +LLK   LP G+ P +  +Y    E   L V +   C   Y++     F +    +L  G
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 96  SLTGVEGLSQEELFIWLPVKDIIVD 120
            LT VEG+ + ++ IW+ V  I  D
Sbjct: 116 KLTDVEGI-KTKVMIWVKVTSISTD 139


>sp|Q54P65|Y6475_DICDI Uncharacterized protein DDB_G0284767 OS=Dictyostelium discoideum
           GN=DDB_G0284767 PE=4 SV=1
          Length = 757

 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 9/48 (18%)

Query: 10  MFSTKNNKILLTSFLILLLSPIAFSSSIHDLLKARGLPAGLLPKEVKS 57
           M ST NNK  LT ++          +SI+++LK+  LP  LLP ++KS
Sbjct: 255 MLSTLNNKGFLTKYIW---------NSINEVLKSNNLPFSLLPSDLKS 293


>sp|P33256|ATPF_MYCGA ATP synthase subunit b OS=Mycoplasma gallisepticum (strain R(low
          / passage 15 / clone 2)) GN=atpF PE=3 SV=2
          Length = 198

 Score = 30.4 bits (67), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 10 MFSTKNNKILLTSFLILLLSPIAFSSSIHDLLKARGLPAGLLP 52
          M+ST+  K+LL SF  L++S I  S SI + L+A+ +     P
Sbjct: 1  MWSTRVKKLLLLSFNFLIISAIVSSCSIPEELQAKTIVNEFFP 43


>sp|Q894L3|SCPB_CLOTE Segregation and condensation protein B OS=Clostridium tetani
           (strain Massachusetts / E88) GN=scpB PE=3 SV=1
          Length = 189

 Score = 30.0 bits (66), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 20/96 (20%)

Query: 29  SPIAFSSSIHDLLKARGLPAGL-----------------LPKEVKSYALYENGT--LEVE 69
           + + F S I  LL A G P GL                 L K ++ Y + + G   +E+E
Sbjct: 12  NELRFFSIIESLLFASGEPLGLKDISEIIELNTLDTKEILQKMIREYEIEKRGIKLIEIE 71

Query: 70  LQGPCFTKYENRVFFESVFRANLSYG-SLTGVEGLS 104
            +    TK EN  F E + + N S   S   +E LS
Sbjct: 72  KKYQLVTKEENSCFIEQLLKTNSSQSLSQAALETLS 107


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.139    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,437,592
Number of Sequences: 539616
Number of extensions: 2657218
Number of successful extensions: 4870
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4868
Number of HSP's gapped (non-prelim): 6
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)