Query 030847
Match_columns 170
No_of_seqs 109 out of 347
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04398 DUF538: Protein of un 100.0 6.4E-44 1.4E-48 271.5 7.0 108 36-146 1-110 (110)
2 cd03697 EFTU_II EFTU_II: Elong 45.5 62 0.0013 22.7 4.9 35 85-121 15-53 (87)
3 PF07494 Reg_prop: Two compone 39.3 36 0.00077 18.8 2.3 18 51-68 2-20 (24)
4 PF01454 MAGE: MAGE family; I 34.9 45 0.00097 26.7 3.2 35 15-49 104-138 (195)
5 PF10749 DUF2534: Protein of u 32.8 30 0.00066 25.7 1.7 37 14-50 11-48 (85)
6 cd01215 Dab Disabled (Dab) Pho 26.8 2.3E+02 0.0051 22.6 5.9 33 101-133 48-80 (139)
7 KOG3591 Alpha crystallins [Pos 26.4 52 0.0011 26.9 2.2 33 40-73 117-149 (173)
8 KOG2455 Delta-1-pyrroline-5-ca 25.5 42 0.00091 32.2 1.7 16 36-51 241-256 (561)
9 cd03690 Tet_II Tet_II: This su 25.3 2.4E+02 0.0052 19.7 5.2 49 80-128 18-69 (85)
10 smart00540 LEM in nuclear memb 24.9 61 0.0013 21.1 1.9 18 34-51 8-25 (44)
11 PF07419 PilM: PilM; InterPro 24.4 81 0.0017 24.7 2.9 57 42-104 58-118 (136)
12 PF15568 Imm20: Immunity prote 23.4 62 0.0013 25.5 2.0 44 4-52 81-124 (129)
13 cd06476 ACD_HspB2_like Alpha c 22.3 70 0.0015 22.8 2.0 32 40-72 52-83 (83)
14 PF13670 PepSY_2: Peptidase pr 21.8 2.8E+02 0.0061 19.1 5.0 29 34-69 31-59 (83)
15 PF12428 DUF3675: Protein of u 21.5 58 0.0013 25.3 1.5 19 11-29 60-78 (118)
16 cd03694 GTPBP_II Domain II of 21.5 1.7E+02 0.0037 20.5 3.8 36 84-121 14-55 (87)
17 PF15284 PAGK: Phage-encoded v 21.5 72 0.0016 22.4 1.8 14 16-29 5-18 (61)
18 PF14567 SUKH_5: SMI1-KNR4 cel 20.2 1.1E+02 0.0024 24.1 2.9 35 36-70 73-110 (132)
19 PF09351 DUF1993: Domain of un 20.2 59 0.0013 26.2 1.4 15 35-49 142-156 (162)
No 1
>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function.; PDB: 1YDU_A.
Probab=100.00 E-value=6.4e-44 Score=271.50 Aligned_cols=108 Identities=33% Similarity=0.642 Sum_probs=81.6
Q ss_pred hHHHHHHhcCCCCCCCCcceeeeeeccC-ceEEEEEcCeEEEEecc-eEEEeeEEEEEEecCceeccccceEEEEEeecc
Q 030847 36 SIHDLLKARGLPAGLLPKEVKSYALYEN-GTLEVELQGPCFTKYEN-RVFFESVFRANLSYGSLTGVEGLSQEELFIWLP 113 (170)
Q Consensus 36 ta~elL~e~GLP~GLLP~~V~~y~l~~t-G~f~V~L~~~C~~~~~~-~v~Y~~~ItG~i~~g~I~~L~GVkvK~lflWv~ 113 (170)
||||+|++||||+||||++|++|++|++ |+|||+|+++|++++++ +|+|+++|||+|++|+|++|+|||+|++|+|++
T Consensus 1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~~C~~~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~W~~ 80 (110)
T PF04398_consen 1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKSPCEFRFEGYLVSYDSEITGYIEKGKIKNLTGVKVKELFLWVP 80 (110)
T ss_dssp --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS-EEEESTTSEEEE-SEEEEEE-SS-EEEEES-EEE-SSSEES
T ss_pred CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecCCEEEEEEEEEEEEcCeEEEEECCCcCccccCEEEEEEEEEee
Confidence 7999999999999999999999999875 99999999999999996 899999999999999999999999999999999
Q ss_pred eeEEEecCCCCCeEEEEEeeeeeeecccCcCCC
Q 030847 114 VKDIIVDDPTSGLILFDIVVAHKELSLSLFEDP 146 (170)
Q Consensus 114 I~eI~vd~~~~~~I~F~vG~isksFP~s~F~~~ 146 (170)
|++|.+ ++++|+|++|.++++||+++|++|
T Consensus 81 v~~i~~---~~~~i~F~~g~~s~sfp~~~F~~s 110 (110)
T PF04398_consen 81 VTEISV---DGDKIYFKVGGISKSFPVSAFEES 110 (110)
T ss_dssp ---BEE----SSSEE-TTSSSS----TTTTSS-
T ss_pred EEEEEE---cCCEEEEEEeeEeccCCHHHhccC
Confidence 999999 458999999999999999999986
No 2
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=45.52 E-value=62 Score=22.71 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=24.0
Q ss_pred eeEEEEEEecCceeccccceEEEE----EeecceeEEEecC
Q 030847 85 ESVFRANLSYGSLTGVEGLSQEEL----FIWLPVKDIIVDD 121 (170)
Q Consensus 85 ~~~ItG~i~~g~I~~L~GVkvK~l----flWv~I~eI~vd~ 121 (170)
.+.++|+|+.|+|+ .|-++..+ .....|..|.+.+
T Consensus 15 G~vv~G~v~~G~v~--~gd~v~~~p~~~~~~~~V~si~~~~ 53 (87)
T cd03697 15 GTVVTGRIERGTIK--VGDEVEIVGFGETLKTTVTGIEMFR 53 (87)
T ss_pred EEEEEEEECCCCCc--cCCEEEEeCCCCCceEEEEEEEECC
Confidence 46799999999998 44444433 3456677777654
No 3
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=39.29 E-value=36 Score=18.82 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=11.6
Q ss_pred CCcc-eeeeeeccCceEEE
Q 030847 51 LPKE-VKSYALYENGTLEV 68 (170)
Q Consensus 51 LP~~-V~~y~l~~tG~f~V 68 (170)
||.+ |.+---|.+|.+||
T Consensus 2 L~~n~I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 2 LPNNNIYSIYEDSDGNLWI 20 (24)
T ss_dssp BSSSCEEEEEE-TTSCEEE
T ss_pred CCCCeEEEEEEcCCcCEEE
Confidence 4544 66655577899998
No 4
>PF01454 MAGE: MAGE family; InterPro: IPR002190 The first mammalian members of the MAGE (melanoma-associated antigen) gene family were originally described as completely silent in normal adult tissues, with the exception of male germ cells and, for some of them, placenta. By contrast, these genes were expressed in various kinds of tumors. However, other members of the family were recently found to be expressed in normal cells, indicating that the family is larger and more disparate than initially expected. MAGE-like genes have also been identified in non-mammalian species, including Drosophila melanogaster (Fruit fly) and Danio rerio (Zebrafish). Although no MAGE homologous sequences have been identified in Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast) or Schizosaccharomyces pombe (Fission yeast), MAGE sequences have been found in several vegetal species, including Arabidopsis thaliana (Mouse-ear cress) []. The only region of homology shared by all of the members of the family is a stretch of about 200 amino acids which has been named the MAGE conserved domain. The MAGE conserved domain is usually located close to the C-terminal, although it can also be found in a more central position in some proteins. The MAGE conserved domain is generally present as a single copy but it is duplicated in some proteins. It has been proposed that the MAGE conserved domain of MAGE-D proteins might interact with p75 neurotrophin or related receptors [].; PDB: 3NW0_B 2WA0_A 1I4F_C.
Probab=34.92 E-value=45 Score=26.73 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHhcCccccchhHHHHHHhcCCCCC
Q 030847 15 NNKILLTSFLILLLSPIAFSSSIHDLLKARGLPAG 49 (170)
Q Consensus 15 ~~~~~l~~~~~l~~~~~a~~~ta~elL~e~GLP~G 49 (170)
...+.+++++|++....+..+.+.+.|+..|++.+
T Consensus 104 ~Gll~~IL~lI~~~g~~i~E~~L~~~L~~lgi~~~ 138 (195)
T PF01454_consen 104 TGLLMLILSLIFMSGNSISEDDLWKFLRRLGIDED 138 (195)
T ss_dssp HHHHHHHHHHHHHCTT-EEHHHHHHHHHHTT--TT
T ss_pred hhHHHHHHHHHHhcCCccCHHHHHHHHHhcCCCcc
Confidence 34455555555555566778899999999999977
No 5
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=32.81 E-value=30 Score=25.70 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=27.0
Q ss_pred cchhHHHHHHHHHhcCcc-ccchhHHHHHHhcCCCCCC
Q 030847 14 KNNKILLTSFLILLLSPI-AFSSSIHDLLKARGLPAGL 50 (170)
Q Consensus 14 ~~~~~~l~~~~~l~~~~~-a~~~ta~elL~e~GLP~GL 50 (170)
..|+.+++++.+.++..+ ..+.+.--+-+|||+|-.=
T Consensus 11 ~~kkFl~~l~~vfiia~~Vv~rAt~gGVi~qYniP~s~ 48 (85)
T PF10749_consen 11 EGKKFLLALAIVFIIAATVVGRATIGGVIEQYNIPFSE 48 (85)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCChhh
Confidence 456666666666666544 6677999999999999653
No 6
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=26.78 E-value=2.3e+02 Score=22.63 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=26.9
Q ss_pred ccceEEEEEeecceeEEEecCCCCCeEEEEEee
Q 030847 101 EGLSQEELFIWLPVKDIIVDDPTSGLILFDIVV 133 (170)
Q Consensus 101 ~GVkvK~lflWv~I~eI~vd~~~~~~I~F~vG~ 133 (170)
+|-+-+...+|+++.+|.+-|+.++.|...-.+
T Consensus 48 ~~~kk~kV~L~IS~dGi~v~D~~T~~ll~~~~i 80 (139)
T cd01215 48 AGAHKTRITLQINIDGIKVLDEKTGAVLHHHPV 80 (139)
T ss_pred hccccceEEEEEccCCEEEEcCCCCcEEEeece
Confidence 556777788999999999998888877776665
No 7
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=52 Score=26.93 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=27.2
Q ss_pred HHHhcCCCCCCCCcceeeeeeccCceEEEEEcCe
Q 030847 40 LLKARGLPAGLLPKEVKSYALYENGTLEVELQGP 73 (170)
Q Consensus 40 lL~e~GLP~GLLP~~V~~y~l~~tG~f~V~L~~~ 73 (170)
.-++|-||.|.=|..|++ .|.++|.++|.-+.+
T Consensus 117 F~R~y~LP~~vdp~~V~S-~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTS-TLSSDGVLTIEAPKP 149 (173)
T ss_pred EEEEecCCCCCChhheEE-eeCCCceEEEEccCC
Confidence 346789999999999887 568899999987753
No 8
>KOG2455 consensus Delta-1-pyrroline-5-carboxylate dehydrogenase [Amino acid transport and metabolism]
Probab=25.49 E-value=42 Score=32.22 Aligned_cols=16 Identities=38% Similarity=0.798 Sum_probs=14.9
Q ss_pred hHHHHHHhcCCCCCCC
Q 030847 36 SIHDLLKARGLPAGLL 51 (170)
Q Consensus 36 ta~elL~e~GLP~GLL 51 (170)
-+|++|+|.|||.|++
T Consensus 241 ii~~il~EAGlP~Gvi 256 (561)
T KOG2455|consen 241 IIYRILREAGLPPGVI 256 (561)
T ss_pred HHHHHHHHcCCCccce
Confidence 6899999999999987
No 9
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=25.28 E-value=2.4e+02 Score=19.65 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=33.8
Q ss_pred ceEEEeeEEEEEEecCceeccc-c--ceEEEEEeecceeEEEecCCCCCeEE
Q 030847 80 NRVFFESVFRANLSYGSLTGVE-G--LSQEELFIWLPVKDIIVDDPTSGLIL 128 (170)
Q Consensus 80 ~~v~Y~~~ItG~i~~g~I~~L~-G--VkvK~lflWv~I~eI~vd~~~~~~I~ 128 (170)
..+.|..-.+|.|..|..-... + .++..++.+..-....++....|.|-
T Consensus 18 G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ 69 (85)
T cd03690 18 ERLAYLRLYSGTLRLRDSVRVNREEKIKITELRVFNNGEVVTADTVTAGDIA 69 (85)
T ss_pred CeEEEEEEccCEEcCCCEEEeCCCcEEEeceeEEEeCCCeEECcEECCCCEE
Confidence 3578888888998888544322 2 45567878877777777766667665
No 10
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=24.91 E-value=61 Score=21.09 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=14.3
Q ss_pred chhHHHHHHhcCCCCCCC
Q 030847 34 SSSIHDLLKARGLPAGLL 51 (170)
Q Consensus 34 ~~ta~elL~e~GLP~GLL 51 (170)
.....+.|.+||+|.|=+
T Consensus 8 d~eL~~~L~~~G~~~gPI 25 (44)
T smart00540 8 DAELRAELKQYGLPPGPI 25 (44)
T ss_pred HHHHHHHHHHcCCCCCCc
Confidence 456788999999999843
No 11
>PF07419 PilM: PilM; InterPro: IPR009987 This entry contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body [].; PDB: 3EOI_A 3HG9_A.
Probab=24.37 E-value=81 Score=24.74 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=37.6
Q ss_pred HhcCCCCCCCCc-ceeeeeeccCceEEEEEcCeEEEEec---ceEEEeeEEEEEEecCceeccccce
Q 030847 42 KARGLPAGLLPK-EVKSYALYENGTLEVELQGPCFTKYE---NRVFFESVFRANLSYGSLTGVEGLS 104 (170)
Q Consensus 42 ~e~GLP~GLLP~-~V~~y~l~~tG~f~V~L~~~C~~~~~---~~v~Y~~~ItG~i~~g~I~~L~GVk 104 (170)
.+.|||- .|. ++..|- +.|..|||.+..+ .+- ...+=++-.-|.++.|++.+..|-.
T Consensus 58 ~~L~lp~--~~~~~i~~~i--~~Gr~yVw~~~~p--gL~~aL~~~s~~S~l~G~~~~G~L~~~~g~~ 118 (136)
T PF07419_consen 58 SQLGLPP--NPDPRISNVI--SNGRLYVWMPEQP--GLYAALREQSRGSALVGRVQNGRLVDPSGTD 118 (136)
T ss_dssp CCCTS-S---SSTTEEEEE--CTTEEEEEECS-T--THHHHHHHCTTT-EEEEEECTTCEEETTTEE
T ss_pred HHcCCCC--CCchhhheee--eCCeEEEEeCCCc--hHHHHHHHhcCCceEEEEecCCEEECCCCCC
Confidence 4567888 444 577766 5699999999765 111 1234556788999999999999854
No 12
>PF15568 Imm20: Immunity protein 20
Probab=23.41 E-value=62 Score=25.46 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=34.7
Q ss_pred ceeeeeeeeccchhHHHHHHHHHhcCccccchhHHHHHHhcCCCCCCCC
Q 030847 4 RKMEIFMFSTKNNKILLTSFLILLLSPIAFSSSIHDLLKARGLPAGLLP 52 (170)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~a~~~ta~elL~e~GLP~GLLP 52 (170)
-|||+.--|..||+=++-++|.. ++.+-..++=+.||||.-+|-
T Consensus 81 L~m~~L~~A~~~~~~~~~~~F~~-----~~i~~Li~V~~KY~LP~~~L~ 124 (129)
T PF15568_consen 81 LKMEILEWADQNNLEVVYDIFMI-----GAIEALIHVSKKYKLPNHPLE 124 (129)
T ss_pred eeehhhhhcccccHHHHHHHHHH-----HHHHHHHHHHHhcCCCCchhH
Confidence 37888888999998888777764 445667788899999988763
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=22.31 E-value=70 Score=22.76 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=22.7
Q ss_pred HHHhcCCCCCCCCcceeeeeeccCceEEEEEcC
Q 030847 40 LLKARGLPAGLLPKEVKSYALYENGTLEVELQG 72 (170)
Q Consensus 40 lL~e~GLP~GLLP~~V~~y~l~~tG~f~V~L~~ 72 (170)
.=+.+-||.++=|..|++ .+.++|-+.|.+|+
T Consensus 52 F~R~~~LP~~vd~~~v~A-~~~~dGvL~I~~Pr 83 (83)
T cd06476 52 FTRTYILPMDVDPLLVRA-SLSHDGILCIQAPR 83 (83)
T ss_pred EEEEEECCCCCChhhEEE-EecCCCEEEEEecC
Confidence 345677888888887776 33457998888864
No 14
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=21.84 E-value=2.8e+02 Score=19.15 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=20.2
Q ss_pred chhHHHHHHhcCCCCCCCCcceeeeeeccCceEEEE
Q 030847 34 SSSIHDLLKARGLPAGLLPKEVKSYALYENGTLEVE 69 (170)
Q Consensus 34 ~~ta~elL~e~GLP~GLLP~~V~~y~l~~tG~f~V~ 69 (170)
.+.+...|++.|. .|.+..++++|..+|+
T Consensus 31 ~~~~~~~l~~~G~-------~v~~ve~~~~g~yev~ 59 (83)
T PF13670_consen 31 IEQAVAKLEAQGY-------QVREVEFDDDGCYEVE 59 (83)
T ss_pred HHHHHHHHHhcCC-------ceEEEEEcCCCEEEEE
Confidence 3467777777553 5788888777777776
No 15
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=21.50 E-value=58 Score=25.31 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.8
Q ss_pred eeccchhHHHHHHHHHhcC
Q 030847 11 FSTKNNKILLTSFLILLLS 29 (170)
Q Consensus 11 ~~~~~~~~~l~~~~~l~~~ 29 (170)
+|+|||++-|++..+|+.=
T Consensus 60 ~a~~CRsvAli~m~LLllR 78 (118)
T PF12428_consen 60 GAACCRSVALIFMVLLLLR 78 (118)
T ss_pred ceeHHHHHHHHHHHHHHHH
Confidence 5889999999988888743
No 16
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=21.47 E-value=1.7e+02 Score=20.53 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=25.0
Q ss_pred EeeEEEEEEecCceeccccceEEEE------EeecceeEEEecC
Q 030847 84 FESVFRANLSYGSLTGVEGLSQEEL------FIWLPVKDIIVDD 121 (170)
Q Consensus 84 Y~~~ItG~i~~g~I~~L~GVkvK~l------flWv~I~eI~vd~ 121 (170)
.++.|+|+++.|.++ .|-++..+ +....|..|.+++
T Consensus 14 ~GtVv~G~v~~G~v~--~g~~v~~~P~~~g~~~~~~V~sI~~~~ 55 (87)
T cd03694 14 VGTVVGGTVSKGVIR--LGDTLLLGPDQDGSFRPVTVKSIHRNR 55 (87)
T ss_pred cceEEEEEEecCEEe--CCCEEEECCCCCCCEeEEEEEEEEECC
Confidence 367899999999999 44444332 2466778887764
No 17
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.46 E-value=72 Score=22.39 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHhcC
Q 030847 16 NKILLTSFLILLLS 29 (170)
Q Consensus 16 ~~~~l~~~~~l~~~ 29 (170)
++|.|+++|+|+.+
T Consensus 5 ksifL~l~~~LsA~ 18 (61)
T PF15284_consen 5 KSIFLALVFILSAA 18 (61)
T ss_pred HHHHHHHHHHHHHh
Confidence 68889999988865
No 18
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=20.23 E-value=1.1e+02 Score=24.12 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=19.5
Q ss_pred hHHHHHHhcCCCCCCCCcc--eee-eeeccCceEEEEE
Q 030847 36 SIHDLLKARGLPAGLLPKE--VKS-YALYENGTLEVEL 70 (170)
Q Consensus 36 ta~elL~e~GLP~GLLP~~--V~~-y~l~~tG~f~V~L 70 (170)
.+..-+++.|||+-++|.. ..+ |-++++|.+..|-
T Consensus 73 e~~~~ar~~glP~~~ipice~~~~yYcl~~~g~V~~W~ 110 (132)
T PF14567_consen 73 EVTADARSIGLPRELIPICEDGGDYYCLDQEGEVVYWS 110 (132)
T ss_dssp HHHHHHHHHT--TTSEEEEEETTEEEEE-TTS-EEEE-
T ss_pred HHHHHHHHcCCChhheeEEecCCcEEEEeCCCeEEEec
Confidence 3444567799999999984 333 4557777754443
No 19
>PF09351 DUF1993: Domain of unknown function (DUF1993); InterPro: IPR018531 This family of proteins are functionally uncharacterised. ; PDB: 2OQM_C 3QTH_A.
Probab=20.20 E-value=59 Score=26.24 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=10.3
Q ss_pred hhHHHHHHhcCCCCC
Q 030847 35 SSIHDLLKARGLPAG 49 (170)
Q Consensus 35 ~ta~elL~e~GLP~G 49 (170)
.|||.+|+..|.|.|
T Consensus 142 ttAYaILR~~GV~lG 156 (162)
T PF09351_consen 142 TTAYAILRHKGVPLG 156 (162)
T ss_dssp HHHHHHHHHCT----
T ss_pred HHHHHHHHhcCCCCC
Confidence 589999999999987
Done!