Query 030847
Match_columns 170
No_of_seqs 109 out of 347
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:18:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 1.8E-41 6.3E-46 274.0 6.0 117 32-153 49-168 (170)
2 3hg9_A PILM; structural genomi 32.4 17 0.0006 27.6 1.5 58 42-102 43-103 (131)
3 3p7j_A Heterochromatin protein 26.6 46 0.0016 23.5 2.8 30 41-71 17-46 (87)
4 2nzc_A Hypothetical protein; s 24.7 19 0.00064 25.6 0.4 17 94-110 66-82 (86)
5 3q9p_A Heat shock protein beta 23.0 49 0.0017 22.2 2.3 31 42-73 54-84 (85)
6 3qth_A Uncharacterized protein 23.0 38 0.0013 26.8 1.9 15 35-49 144-158 (176)
7 2oqm_A Hypothetical protein; s 19.3 44 0.0015 26.9 1.6 15 35-49 163-177 (192)
8 3nw0_B Melanoma-associated ant 18.2 1.1E+02 0.0039 24.6 3.9 33 17-49 101-133 (217)
9 3q6s_A Chromobox protein homol 17.5 43 0.0015 23.1 1.0 28 43-71 3-30 (78)
10 2wa0_A Melanoma-associated ant 16.8 1.1E+02 0.0039 25.0 3.6 33 17-49 125-157 (240)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=100.00 E-value=1.8e-41 Score=273.97 Aligned_cols=117 Identities=25% Similarity=0.442 Sum_probs=110.3
Q ss_pred ccchhHHHHHHhcCCCCCCCCcceeeeeecc-CceEEEEEcCeEEEEec--ceEEEeeEEEEEEecCceeccccceEEEE
Q 030847 32 AFSSSIHDLLKARGLPAGLLPKEVKSYALYE-NGTLEVELQGPCFTKYE--NRVFFESVFRANLSYGSLTGVEGLSQEEL 108 (170)
Q Consensus 32 a~~~ta~elL~e~GLP~GLLP~~V~~y~l~~-tG~f~V~L~~~C~~~~~--~~v~Y~~~ItG~i~~g~I~~L~GVkvK~l 108 (170)
++.+++||+|++||||+||||.+|++|+||+ ||+|||+|+++|++.++ ++|+|+++|||+|++|+|++|+||++|+|
T Consensus 49 ~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~L 128 (170)
T 1ydu_A 49 KMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVM 128 (170)
T ss_dssp TTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESS
T ss_pred cccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEE
Confidence 6778999999999999999999999999985 69999999999999997 48999999999999999999999999999
Q ss_pred EeecceeEEEecCCCCCeEEEEEeeeeeeecccCcCCCCCCCCch
Q 030847 109 FIWLPVKDIIVDDPTSGLILFDIVVAHKELSLSLFEDPPDCKPQG 153 (170)
Q Consensus 109 flWv~I~eI~vd~~~~~~I~F~vG~isksFP~s~F~~~P~C~~~~ 153 (170)
+|++|++|.|+ +++|+|++|+ +++||+++|+.+|+|...+
T Consensus 129 -lWv~V~eI~v~---~~kI~F~vGi-~ksfp~saFe~~~~c~~~~ 168 (170)
T 1ydu_A 129 -IWVKVTSISTD---ASKVYFTAGM-KKSRSRDAYGVQRNGLRVD 168 (170)
T ss_dssp -SEESCCCBEEC---SSSEECTTSS-SSCCCHHHHSSCCCCCCTT
T ss_pred -EEeeEEEEEEe---CCEEEEEEcC-cccccHHHhcCCcCCcccC
Confidence 99999999994 5899999995 8999999999999998764
No 2
>3hg9_A PILM; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, P protein, unknown function; 2.40A {Pseudomonas aeruginosa}
Probab=32.40 E-value=17 Score=27.57 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=41.3
Q ss_pred HhcCCCCCCCCcc-eeeeeeccCceEEEEEcCeEEEEec--ceEEEeeEEEEEEecCceecccc
Q 030847 42 KARGLPAGLLPKE-VKSYALYENGTLEVELQGPCFTKYE--NRVFFESVFRANLSYGSLTGVEG 102 (170)
Q Consensus 42 ~e~GLP~GLLP~~-V~~y~l~~tG~f~V~L~~~C~~~~~--~~v~Y~~~ItG~i~~g~I~~L~G 102 (170)
.+.|||.+..|.. ++.|- +.|..|||....+.--+. ...+=++ .-|..+.|+|-.-.|
T Consensus 43 a~L~lP~wy~~~~~i~~~I--~~Gr~yV~~~~~~pgL~aaL~~~t~~S-l~G~~~~G~Lv~p~g 103 (131)
T 3hg9_A 43 SALGLPAWFRKPVRLQGYI--AAGTSYAFIASPPAGLAAAVDTGTESD-LVGVRRNGQLVTRRL 103 (131)
T ss_dssp TTTTCCSSCCCCTTEEEEE--SSSCEEEEESSCCTTHHHHHHHHCCCE-EEEEESSSSEEETTT
T ss_pred HHcCCCcccCCCCCeeEEE--ECCEEEEEecCCCchHHHHHHHhcCcc-eeEEeeCCEEECCCC
Confidence 4678999998864 88887 569999999543321111 1234455 889999999998887
No 3
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=26.63 E-value=46 Score=23.55 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=21.0
Q ss_pred HHhcCCCCCCCCcceeeeeeccCceEEEEEc
Q 030847 41 LKARGLPAGLLPKEVKSYALYENGTLEVELQ 71 (170)
Q Consensus 41 L~e~GLP~GLLP~~V~~y~l~~tG~f~V~L~ 71 (170)
=+.+||.+||=|..|.+.+ +.+|.+...++
T Consensus 17 ~k~~GF~RGle~EkIlgat-~~~Gel~fLVK 46 (87)
T 3p7j_A 17 SGSTGFDRGLEAEKILGAS-DNNGRLTFLIQ 46 (87)
T ss_dssp ---CTTTTTCCEEEEEEEE-EETTEEEEEEE
T ss_pred CCCCCccCCCCceEEeeEE-ccCCcEEEEEE
Confidence 3568999999999987765 56787665444
No 4
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=24.71 E-value=19 Score=25.62 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=14.3
Q ss_pred cCceeccccceEEEEEe
Q 030847 94 YGSLTGVEGLSQEELFI 110 (170)
Q Consensus 94 ~g~I~~L~GVkvK~lfl 110 (170)
.|+|.+|+||++|-+..
T Consensus 66 ~gkLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 66 SGKLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHTSTTEEEEEEEC
T ss_pred HHHhCCCCCEEEEEEEe
Confidence 47899999999998753
No 5
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=23.02 E-value=49 Score=22.22 Aligned_cols=31 Identities=42% Similarity=0.614 Sum_probs=22.4
Q ss_pred HhcCCCCCCCCcceeeeeeccCceEEEEEcCe
Q 030847 42 KARGLPAGLLPKEVKSYALYENGTLEVELQGP 73 (170)
Q Consensus 42 ~e~GLP~GLLP~~V~~y~l~~tG~f~V~L~~~ 73 (170)
+++-||.++=|..|+. .+.++|-++|.+|++
T Consensus 54 R~~~LP~~vd~~~i~A-~~~~~GvL~I~lPK~ 84 (85)
T 3q9p_A 54 RKYTLPPGVDPTQVSS-SLSPEGTLTVEAPMP 84 (85)
T ss_dssp EEEECCTTCCGGGCEE-EECTTSEEEEEEECC
T ss_pred EEEECCCCcChHHcEE-EECCCCEEEEEEEcC
Confidence 4566888887777765 334679999999864
No 6
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=22.99 E-value=38 Score=26.84 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=14.0
Q ss_pred hhHHHHHHhcCCCCC
Q 030847 35 SSIHDLLKARGLPAG 49 (170)
Q Consensus 35 ~ta~elL~e~GLP~G 49 (170)
.|||.+|+..|.|.|
T Consensus 144 tTAYaILR~~GV~LG 158 (176)
T 3qth_A 144 SMVYAIAKNNGVSVT 158 (176)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCcC
Confidence 589999999999988
No 7
>2oqm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.83A {Shewanella denitrificans} SCOP: a.213.1.3
Probab=19.29 E-value=44 Score=26.89 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=14.0
Q ss_pred hhHHHHHHhcCCCCC
Q 030847 35 SSIHDLLKARGLPAG 49 (170)
Q Consensus 35 ~ta~elL~e~GLP~G 49 (170)
.|||.+|+..|.|.|
T Consensus 163 tTAYaILR~~GV~LG 177 (192)
T 2oqm_A 163 TTAYGILRHNGVEVG 177 (192)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCCCC
Confidence 589999999999988
No 8
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=18.21 E-value=1.1e+02 Score=24.56 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCccccchhHHHHHHhcCCCCC
Q 030847 17 KILLTSFLILLLSPIAFSSSIHDLLKARGLPAG 49 (170)
Q Consensus 17 ~~~l~~~~~l~~~~~a~~~ta~elL~e~GLP~G 49 (170)
++++++.+|.+-...+..+.+.+.|...|++.|
T Consensus 101 LL~~IL~~Ifm~Gn~~~Ee~lw~~L~~lgv~~g 133 (217)
T 3nw0_B 101 LLMIVLGLIFMKGNTLKETEAWDFLRRLGVYPT 133 (217)
T ss_dssp HHHHHHHHHHHTTTCBCHHHHHHHHHHC-CCC-
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCC
Confidence 344444444444466778899999999998754
No 9
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=17.45 E-value=43 Score=23.06 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=20.8
Q ss_pred hcCCCCCCCCcceeeeeeccCceEEEEEc
Q 030847 43 ARGLPAGLLPKEVKSYALYENGTLEVELQ 71 (170)
Q Consensus 43 e~GLP~GLLP~~V~~y~l~~tG~f~V~L~ 71 (170)
.+||.+||=|..|.+.+ +.+|.+...++
T Consensus 3 ~~Gf~rGle~EkI~g~~-~~~Gel~fLvK 30 (78)
T 3q6s_A 3 PRGFARGLEPERIIGAT-DSSGELMFLMK 30 (78)
T ss_dssp CCGGGGCCCEEEEEEEE-CTTSSCEEEEE
T ss_pred CCccccCCCceEEeeEE-cCCCcEEEEEE
Confidence 47999999999988765 56687654443
No 10
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Probab=16.76 E-value=1.1e+02 Score=25.00 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCccccchhHHHHHHhcCCCCC
Q 030847 17 KILLTSFLILLLSPIAFSSSIHDLLKARGLPAG 49 (170)
Q Consensus 17 ~~~l~~~~~l~~~~~a~~~ta~elL~e~GLP~G 49 (170)
++.+++.+|++-...+..+.+.+.|...|+..|
T Consensus 125 LL~~IL~~Ifm~gn~~~Ee~Lw~~L~~lgv~~g 157 (240)
T 2wa0_A 125 LLIIVLGTIAMEGDSASEEEIWEELGVMGVYDG 157 (240)
T ss_dssp HHHHHHHHHHHHSSCEEHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCC
Confidence 344444445445566777899999999999986
Done!