Query 030848
Match_columns 170
No_of_seqs 109 out of 1666
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 2.3E-32 5E-37 190.6 18.5 163 1-170 1-163 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 2.8E-32 6.1E-37 190.4 18.5 163 1-170 1-163 (182)
3 KOG0084 GTPase Rab1/YPT1, smal 100.0 5.9E-33 1.3E-37 188.5 12.9 144 15-170 7-157 (205)
4 smart00177 ARF ARF-like small 100.0 4.7E-31 1E-35 183.1 17.7 159 1-170 1-159 (175)
5 cd04149 Arf6 Arf6 subfamily. 100.0 7.5E-31 1.6E-35 181.0 17.0 151 13-170 5-155 (168)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.1E-30 2.3E-35 177.2 13.1 144 16-170 21-170 (221)
7 KOG0092 GTPase Rab5/YPT51 and 100.0 1.2E-30 2.5E-35 176.7 12.8 144 15-170 3-152 (200)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 8.6E-30 1.9E-34 174.2 17.1 146 18-170 1-146 (159)
9 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.8E-29 3.9E-34 175.0 18.2 160 4-170 2-161 (174)
10 cd04154 Arl2 Arl2 subfamily. 100.0 1.4E-29 2.9E-34 175.4 17.5 154 10-170 7-160 (173)
11 KOG0078 GTP-binding protein SE 100.0 1.2E-29 2.6E-34 174.6 13.8 144 15-170 10-159 (207)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.6E-29 3.5E-34 176.3 14.6 143 15-170 3-164 (182)
13 cd04121 Rab40 Rab40 subfamily. 100.0 4.4E-29 9.5E-34 174.9 15.6 142 16-170 5-152 (189)
14 cd04158 ARD1 ARD1 subfamily. 100.0 9.9E-29 2.1E-33 170.5 17.2 145 19-170 1-146 (169)
15 PF00025 Arf: ADP-ribosylation 100.0 1E-28 2.3E-33 171.3 17.3 159 5-170 1-161 (175)
16 KOG0080 GTPase Rab18, small G 100.0 9.5E-30 2.1E-34 167.5 10.7 143 16-169 10-158 (209)
17 smart00178 SAR Sar1p-like memb 100.0 2E-28 4.4E-33 171.2 18.3 162 2-170 1-170 (184)
18 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.3E-28 2.7E-33 169.4 17.0 152 19-170 1-154 (167)
19 cd04131 Rnd Rnd subfamily. Th 100.0 4.2E-29 9.1E-34 173.7 14.0 141 17-170 1-160 (178)
20 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.2E-28 4.8E-33 168.5 17.4 145 19-170 1-148 (167)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.9E-29 1.9E-33 171.3 15.1 143 17-170 2-149 (172)
22 cd04120 Rab12 Rab12 subfamily. 100.0 2E-28 4.2E-33 173.2 16.9 142 18-170 1-148 (202)
23 cd04133 Rop_like Rop subfamily 100.0 6.6E-29 1.4E-33 172.2 14.1 140 18-170 2-158 (176)
24 KOG0098 GTPase Rab2, small G p 100.0 5.7E-29 1.2E-33 167.6 12.5 145 14-170 3-153 (216)
25 KOG0070 GTP-binding ADP-ribosy 100.0 6.5E-29 1.4E-33 167.6 12.9 163 1-170 1-163 (181)
26 cd01875 RhoG RhoG subfamily. 100.0 1.4E-28 3E-33 173.0 14.9 142 16-170 2-162 (191)
27 cd04122 Rab14 Rab14 subfamily. 100.0 2.8E-28 6.1E-33 167.7 15.3 142 17-170 2-149 (166)
28 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.5E-28 5.5E-33 175.5 15.6 144 14-170 10-172 (232)
29 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 8E-28 1.7E-32 165.3 17.4 142 20-169 2-144 (164)
30 cd04136 Rap_like Rap-like subf 100.0 3.1E-28 6.6E-33 166.7 15.3 142 18-170 2-148 (163)
31 cd04127 Rab27A Rab27a subfamil 100.0 3.7E-28 8E-33 169.0 15.9 144 16-170 3-162 (180)
32 cd00879 Sar1 Sar1 subfamily. 100.0 1.5E-27 3.2E-32 167.4 18.8 162 2-170 3-176 (190)
33 cd04175 Rap1 Rap1 subgroup. T 100.0 3.1E-28 6.7E-33 167.1 15.0 143 17-170 1-148 (164)
34 cd04157 Arl6 Arl6 subfamily. 100.0 8.8E-28 1.9E-32 164.2 17.1 147 19-170 1-149 (162)
35 PTZ00369 Ras-like protein; Pro 100.0 4.1E-28 8.8E-33 170.3 15.7 145 15-170 3-152 (189)
36 cd04151 Arl1 Arl1 subfamily. 100.0 9E-28 1.9E-32 163.9 16.7 145 19-170 1-145 (158)
37 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.7E-28 5.9E-33 174.5 14.7 142 17-170 1-160 (222)
38 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 5.5E-28 1.2E-32 171.2 16.1 143 18-170 1-153 (201)
39 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.4E-27 2.9E-32 162.9 17.1 145 19-170 1-145 (158)
40 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.3E-28 1.4E-32 164.7 15.4 143 17-170 1-147 (162)
41 cd04126 Rab20 Rab20 subfamily. 100.0 9.9E-28 2.2E-32 171.4 16.4 145 18-170 1-175 (220)
42 cd00877 Ran Ran (Ras-related n 100.0 6.7E-28 1.5E-32 165.9 15.0 140 18-170 1-144 (166)
43 cd04119 RJL RJL (RabJ-Like) su 100.0 8.4E-28 1.8E-32 165.0 15.1 142 18-170 1-152 (168)
44 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.8E-28 1.9E-32 166.7 15.3 141 18-170 2-160 (175)
45 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.2E-27 2.6E-32 163.9 15.4 143 17-170 2-149 (164)
46 KOG0076 GTP-binding ADP-ribosy 100.0 4.4E-29 9.4E-34 166.3 7.9 170 1-170 1-172 (197)
47 KOG0071 GTP-binding ADP-ribosy 100.0 1.7E-27 3.6E-32 153.6 14.9 163 1-170 1-163 (180)
48 KOG0073 GTP-binding ADP-ribosy 100.0 2.6E-27 5.7E-32 156.4 15.9 162 1-170 1-163 (185)
49 PLN03071 GTP-binding nuclear p 100.0 1E-27 2.2E-32 171.8 15.2 142 15-170 11-157 (219)
50 KOG0394 Ras-related GTPase [Ge 100.0 4.6E-29 9.9E-34 167.7 7.4 151 14-170 6-163 (210)
51 smart00173 RAS Ras subfamily o 100.0 1.8E-27 3.8E-32 163.2 15.5 142 18-170 1-147 (164)
52 cd04176 Rap2 Rap2 subgroup. T 100.0 1.6E-27 3.4E-32 163.4 15.2 143 17-170 1-148 (163)
53 cd01867 Rab8_Rab10_Rab13_like 100.0 2E-27 4.2E-32 163.7 15.6 143 16-170 2-150 (167)
54 cd04117 Rab15 Rab15 subfamily. 100.0 2.7E-27 5.9E-32 162.1 15.9 141 18-170 1-147 (161)
55 cd01865 Rab3 Rab3 subfamily. 100.0 2.5E-27 5.4E-32 162.8 15.8 141 18-170 2-148 (165)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2E-27 4.3E-32 164.2 14.8 141 19-170 2-150 (170)
57 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.8E-27 1E-31 161.5 16.3 142 17-170 2-149 (166)
58 KOG0079 GTP-binding protein H- 100.0 1.8E-28 3.9E-33 159.4 8.6 140 18-170 9-154 (198)
59 cd04140 ARHI_like ARHI subfami 100.0 2.9E-27 6.3E-32 162.5 15.0 142 18-170 2-150 (165)
60 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.7E-27 5.8E-32 163.5 14.8 142 17-169 2-150 (170)
61 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 8.1E-27 1.8E-31 162.9 17.2 147 17-170 3-155 (183)
62 cd04109 Rab28 Rab28 subfamily. 100.0 4.5E-27 9.8E-32 168.1 16.1 142 18-170 1-151 (215)
63 cd01871 Rac1_like Rac1-like su 100.0 2.5E-27 5.4E-32 164.3 14.2 142 17-170 1-160 (174)
64 cd04156 ARLTS1 ARLTS1 subfamil 100.0 9.1E-27 2E-31 159.0 16.4 145 19-170 1-147 (160)
65 cd04111 Rab39 Rab39 subfamily. 100.0 4.8E-27 1E-31 167.5 15.5 143 17-170 2-151 (211)
66 cd04106 Rab23_lke Rab23-like s 100.0 6.2E-27 1.3E-31 160.1 15.1 140 18-170 1-148 (162)
67 PF00071 Ras: Ras family; Int 100.0 9.1E-27 2E-31 159.3 15.6 140 19-170 1-146 (162)
68 cd04159 Arl10_like Arl10-like 100.0 2E-26 4.4E-31 156.4 17.1 145 20-170 2-146 (159)
69 cd04144 Ras2 Ras2 subfamily. 100.0 4.3E-27 9.3E-32 165.3 14.2 141 19-170 1-148 (190)
70 cd04128 Spg1 Spg1p. Spg1p (se 100.0 8E-27 1.7E-31 162.8 15.4 140 18-170 1-151 (182)
71 cd04110 Rab35 Rab35 subfamily. 100.0 1.1E-26 2.4E-31 164.3 16.2 142 16-170 5-152 (199)
72 cd04116 Rab9 Rab9 subfamily. 100.0 9.8E-27 2.1E-31 160.5 15.5 146 15-170 3-156 (170)
73 cd04155 Arl3 Arl3 subfamily. 100.0 4E-26 8.8E-31 157.8 18.3 152 12-170 9-160 (173)
74 cd01864 Rab19 Rab19 subfamily. 99.9 2.1E-26 4.6E-31 158.1 16.5 144 16-170 2-151 (165)
75 cd04124 RabL2 RabL2 subfamily. 99.9 8.3E-27 1.8E-31 159.7 14.2 139 18-170 1-143 (161)
76 cd04113 Rab4 Rab4 subfamily. 99.9 1.2E-26 2.6E-31 158.6 14.8 141 18-170 1-147 (161)
77 KOG0075 GTP-binding ADP-ribosy 99.9 3.8E-27 8.2E-32 153.1 11.5 160 4-169 4-166 (186)
78 cd01868 Rab11_like Rab11-like. 99.9 1.5E-26 3.3E-31 158.8 15.2 142 17-170 3-150 (165)
79 cd01866 Rab2 Rab2 subfamily. 99.9 2.1E-26 4.7E-31 158.7 15.5 142 17-170 4-151 (168)
80 cd01860 Rab5_related Rab5-rela 99.9 2.2E-26 4.7E-31 157.6 15.4 142 17-170 1-148 (163)
81 cd04103 Centaurin_gamma Centau 99.9 2.3E-26 4.9E-31 157.1 15.3 138 18-170 1-144 (158)
82 cd04177 RSR1 RSR1 subgroup. R 99.9 2E-26 4.3E-31 158.8 15.0 144 17-170 1-149 (168)
83 cd01863 Rab18 Rab18 subfamily. 99.9 3.1E-26 6.8E-31 156.5 15.4 142 18-170 1-147 (161)
84 cd04125 RabA_like RabA-like su 99.9 2.8E-26 6.1E-31 160.8 15.2 141 18-170 1-147 (188)
85 cd04132 Rho4_like Rho4-like su 99.9 3.3E-26 7.2E-31 160.2 15.2 140 18-170 1-152 (187)
86 cd04101 RabL4 RabL4 (Rab-like4 99.9 4.9E-26 1.1E-30 156.0 15.6 142 18-170 1-149 (164)
87 cd01861 Rab6 Rab6 subfamily. 99.9 5.6E-26 1.2E-30 155.2 15.7 141 18-170 1-147 (161)
88 cd04143 Rhes_like Rhes_like su 99.9 4.2E-26 9.2E-31 165.8 15.7 143 18-170 1-156 (247)
89 cd04134 Rho3 Rho3 subfamily. 99.9 1.7E-26 3.6E-31 162.2 13.2 141 18-170 1-159 (189)
90 KOG0087 GTPase Rab11/YPT3, sma 99.9 8.7E-27 1.9E-31 160.0 11.3 143 16-170 13-161 (222)
91 cd04112 Rab26 Rab26 subfamily. 99.9 4E-26 8.7E-31 160.4 15.1 141 18-170 1-148 (191)
92 PLN03110 Rab GTPase; Provision 99.9 4.9E-26 1.1E-30 162.9 15.6 143 16-170 11-159 (216)
93 smart00176 RAN Ran (Ras-relate 99.9 3.4E-26 7.4E-31 161.5 14.0 135 23-170 1-139 (200)
94 cd01873 RhoBTB RhoBTB subfamil 99.9 3.5E-26 7.5E-31 161.1 13.9 144 17-170 2-181 (195)
95 KOG0093 GTPase Rab3, small G p 99.9 1.4E-26 3.1E-31 150.5 10.8 142 17-170 21-168 (193)
96 cd01862 Rab7 Rab7 subfamily. 99.9 1.3E-25 2.9E-30 154.8 15.8 143 18-170 1-152 (172)
97 cd04139 RalA_RalB RalA/RalB su 99.9 1.4E-25 2.9E-30 153.5 14.8 142 18-170 1-147 (164)
98 smart00175 RAB Rab subfamily o 99.9 1.3E-25 2.8E-30 153.7 14.7 141 18-170 1-147 (164)
99 smart00174 RHO Rho (Ras homolo 99.9 6.8E-26 1.5E-30 156.8 13.3 138 20-170 1-157 (174)
100 cd04146 RERG_RasL11_like RERG/ 99.9 7E-26 1.5E-30 155.5 13.2 141 19-170 1-148 (165)
101 KOG0086 GTPase Rab4, small G p 99.9 6.8E-26 1.5E-30 148.3 12.2 142 17-170 9-156 (214)
102 cd04123 Rab21 Rab21 subfamily. 99.9 2E-25 4.3E-30 152.3 15.0 141 18-170 1-147 (162)
103 PLN03108 Rab family protein; P 99.9 2.7E-25 5.8E-30 158.4 15.9 143 16-170 5-153 (210)
104 cd04142 RRP22 RRP22 subfamily. 99.9 1.6E-25 3.5E-30 158.1 14.6 143 18-170 1-159 (198)
105 PLN03118 Rab family protein; P 99.9 3.8E-25 8.2E-30 157.8 16.2 145 14-170 11-162 (211)
106 cd00154 Rab Rab family. Rab G 99.9 5.2E-25 1.1E-29 149.3 15.5 141 18-170 1-147 (159)
107 KOG0091 GTPase Rab39, small G 99.9 8.5E-26 1.8E-30 149.3 11.0 144 16-170 7-158 (213)
108 KOG0095 GTPase Rab30, small G 99.9 5E-26 1.1E-30 148.4 9.5 143 16-169 6-153 (213)
109 cd04118 Rab24 Rab24 subfamily. 99.9 5.3E-25 1.2E-29 154.9 15.3 140 18-170 1-151 (193)
110 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.6E-25 5.6E-30 153.9 13.3 140 18-170 1-159 (173)
111 cd04135 Tc10 TC10 subfamily. 99.9 2.6E-25 5.6E-30 153.9 13.2 141 18-170 1-159 (174)
112 cd01893 Miro1 Miro1 subfamily. 99.9 4.7E-25 1E-29 151.7 13.9 142 18-170 1-149 (166)
113 cd04102 RabL3 RabL3 (Rab-like3 99.9 8.6E-25 1.9E-29 154.4 15.0 116 18-139 1-143 (202)
114 cd01892 Miro2 Miro2 subfamily. 99.9 5.5E-25 1.2E-29 151.8 13.1 143 15-170 2-151 (169)
115 cd04148 RGK RGK subfamily. Th 99.9 1.2E-24 2.7E-29 156.1 15.1 140 18-170 1-148 (221)
116 cd04137 RheB Rheb (Ras Homolog 99.9 2.1E-24 4.5E-29 150.2 15.0 142 18-170 2-148 (180)
117 cd00876 Ras Ras family. The R 99.9 1.8E-24 4E-29 147.2 14.3 141 19-170 1-146 (160)
118 cd04114 Rab30 Rab30 subfamily. 99.9 6E-24 1.3E-28 146.3 16.8 145 15-170 5-154 (169)
119 cd04147 Ras_dva Ras-dva subfam 99.9 1.9E-24 4.2E-29 152.7 14.4 142 19-170 1-148 (198)
120 cd01870 RhoA_like RhoA-like su 99.9 1.2E-24 2.7E-29 150.6 13.0 141 18-170 2-160 (175)
121 cd00157 Rho Rho (Ras homology) 99.9 1.6E-24 3.4E-29 149.3 13.4 142 18-170 1-158 (171)
122 KOG0395 Ras-related GTPase [Ge 99.9 1.3E-24 2.8E-29 152.6 12.3 144 16-170 2-150 (196)
123 KOG0081 GTPase Rab27, small G 99.9 2.9E-26 6.4E-31 150.9 3.2 142 18-170 10-166 (219)
124 PTZ00132 GTP-binding nuclear p 99.9 8.4E-24 1.8E-28 151.2 16.0 145 13-170 5-153 (215)
125 KOG0074 GTP-binding ADP-ribosy 99.9 1.2E-23 2.6E-28 136.0 13.3 153 11-170 11-164 (185)
126 cd04129 Rho2 Rho2 subfamily. 99.9 2E-23 4.3E-28 146.3 13.6 142 17-170 1-158 (187)
127 PLN00023 GTP-binding protein; 99.9 3.8E-23 8.2E-28 153.3 15.0 134 15-154 19-188 (334)
128 cd01898 Obg Obg subfamily. Th 99.9 1E-22 2.2E-27 140.2 14.5 144 19-170 2-156 (170)
129 KOG0088 GTPase Rab21, small G 99.9 2.6E-24 5.7E-29 141.6 5.6 143 16-170 12-160 (218)
130 KOG0097 GTPase Rab14, small G 99.9 5.1E-23 1.1E-27 133.4 11.3 143 16-170 10-158 (215)
131 cd01897 NOG NOG1 is a nucleola 99.9 3.3E-22 7.1E-27 137.5 15.5 142 18-170 1-153 (168)
132 cd04171 SelB SelB subfamily. 99.9 1.7E-22 3.7E-27 138.1 12.8 144 18-170 1-151 (164)
133 cd01891 TypA_BipA TypA (tyrosi 99.9 7.5E-22 1.6E-26 139.1 15.3 148 18-170 3-167 (194)
134 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.6E-24 3.4E-29 139.0 0.8 137 22-170 2-145 (192)
135 TIGR00231 small_GTP small GTP- 99.9 2.1E-21 4.5E-26 131.2 15.6 143 17-170 1-149 (161)
136 cd01890 LepA LepA subfamily. 99.9 1.6E-21 3.5E-26 135.4 15.2 145 19-170 2-162 (179)
137 PRK12299 obgE GTPase CgtA; Rev 99.9 9.3E-22 2E-26 148.4 14.6 144 18-170 159-313 (335)
138 KOG0393 Ras-related small GTPa 99.9 5.7E-23 1.2E-27 142.0 6.3 142 16-169 3-163 (198)
139 cd01878 HflX HflX subfamily. 99.9 2.2E-21 4.7E-26 137.7 14.3 142 15-170 39-190 (204)
140 TIGR02729 Obg_CgtA Obg family 99.9 1.6E-21 3.6E-26 146.9 14.2 146 17-170 157-314 (329)
141 PF08477 Miro: Miro-like prote 99.9 5.9E-22 1.3E-26 129.0 9.6 116 19-136 1-119 (119)
142 KOG0072 GTP-binding ADP-ribosy 99.9 1.5E-21 3.2E-26 126.7 9.0 159 5-170 5-164 (182)
143 cd00882 Ras_like_GTPase Ras-li 99.9 7.7E-21 1.7E-25 127.3 12.8 138 22-170 1-145 (157)
144 cd00881 GTP_translation_factor 99.9 4.5E-20 9.8E-25 128.8 17.1 147 19-170 1-172 (189)
145 TIGR02528 EutP ethanolamine ut 99.9 2.1E-21 4.5E-26 130.2 9.7 123 19-170 2-130 (142)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.6E-20 3.4E-25 129.0 14.1 142 19-170 2-151 (168)
147 TIGR03598 GTPase_YsxC ribosome 99.9 1.1E-20 2.3E-25 131.6 13.3 147 11-170 12-175 (179)
148 COG1100 GTPase SAR1 and relate 99.9 1.2E-20 2.5E-25 135.1 13.7 119 16-141 4-127 (219)
149 PF00009 GTP_EFTU: Elongation 99.9 2.5E-20 5.5E-25 130.7 13.9 151 15-170 1-172 (188)
150 cd01881 Obg_like The Obg-like 99.9 1.3E-20 2.8E-25 130.3 12.3 142 22-170 1-162 (176)
151 PRK15494 era GTPase Era; Provi 99.9 2.7E-20 6E-25 141.1 15.1 145 14-170 49-201 (339)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 5.2E-20 1.1E-24 124.8 14.8 133 18-170 2-142 (157)
153 cd04105 SR_beta Signal recogni 99.9 2.3E-20 5E-25 132.3 13.3 122 19-147 2-131 (203)
154 PRK12296 obgE GTPase CgtA; Rev 99.8 1.9E-20 4.1E-25 146.6 13.4 146 16-170 158-325 (500)
155 PF02421 FeoB_N: Ferrous iron 99.8 3.6E-21 7.9E-26 129.8 8.1 134 18-170 1-146 (156)
156 PRK03003 GTP-binding protein D 99.8 4.3E-20 9.3E-25 145.8 15.4 147 16-170 210-367 (472)
157 cd01889 SelB_euk SelB subfamil 99.8 2.8E-20 6E-25 130.9 12.7 148 18-170 1-171 (192)
158 TIGR03156 GTP_HflX GTP-binding 99.8 5.7E-20 1.2E-24 139.7 15.2 140 16-170 188-337 (351)
159 TIGR00450 mnmE_trmE_thdF tRNA 99.8 7.8E-20 1.7E-24 142.6 16.0 137 14-169 200-345 (442)
160 cd01895 EngA2 EngA2 subfamily. 99.8 1.6E-19 3.5E-24 124.2 15.6 146 17-170 2-160 (174)
161 cd01879 FeoB Ferrous iron tran 99.8 3.4E-20 7.3E-25 126.1 11.9 133 22-170 1-142 (158)
162 PRK12317 elongation factor 1-a 99.8 4.7E-20 1E-24 144.0 14.2 156 13-170 2-190 (425)
163 PRK04213 GTP-binding protein; 99.8 6.8E-21 1.5E-25 134.8 8.6 143 16-170 8-178 (201)
164 TIGR00436 era GTP-binding prot 99.8 9.3E-20 2E-24 134.5 14.8 139 19-170 2-149 (270)
165 PRK12297 obgE GTPase CgtA; Rev 99.8 1.1E-19 2.4E-24 140.5 15.3 142 18-170 159-312 (424)
166 TIGR03594 GTPase_EngA ribosome 99.8 9.4E-20 2E-24 142.6 14.9 147 16-170 171-329 (429)
167 TIGR00483 EF-1_alpha translati 99.8 2.4E-20 5.3E-25 145.6 11.5 155 14-170 4-192 (426)
168 PRK05291 trmE tRNA modificatio 99.8 1.2E-19 2.6E-24 142.2 15.4 135 15-170 213-355 (449)
169 cd01888 eIF2_gamma eIF2-gamma 99.8 5.3E-20 1.1E-24 130.5 11.4 147 18-170 1-184 (203)
170 PTZ00099 rab6; Provisional 99.8 7.3E-20 1.6E-24 126.9 11.7 118 47-170 4-127 (176)
171 COG2229 Predicted GTPase [Gene 99.8 3.2E-19 7E-24 120.6 13.9 150 14-170 7-163 (187)
172 cd04166 CysN_ATPS CysN_ATPS su 99.8 3E-19 6.6E-24 127.1 14.0 146 19-170 1-179 (208)
173 TIGR00487 IF-2 translation ini 99.8 6.9E-19 1.5E-23 141.2 16.4 145 16-170 86-235 (587)
174 cd01883 EF1_alpha Eukaryotic e 99.8 2.2E-19 4.9E-24 128.7 12.3 149 19-170 1-190 (219)
175 cd01884 EF_Tu EF-Tu subfamily. 99.8 6.7E-19 1.4E-23 123.9 14.2 150 16-170 1-168 (195)
176 PRK03003 GTP-binding protein D 99.8 7E-19 1.5E-23 138.9 15.7 140 16-170 37-184 (472)
177 cd01894 EngA1 EngA1 subfamily. 99.8 4.6E-19 9.9E-24 120.2 12.4 135 21-170 1-143 (157)
178 TIGR01393 lepA GTP-binding pro 99.8 1.9E-18 4.1E-23 139.2 17.4 144 17-170 3-165 (595)
179 PRK00093 GTP-binding protein D 99.8 5.5E-19 1.2E-23 138.5 13.9 147 16-170 172-329 (435)
180 KOG4252 GTP-binding protein [S 99.8 8.6E-21 1.9E-25 127.6 3.0 140 16-168 19-164 (246)
181 CHL00189 infB translation init 99.8 1.4E-18 3E-23 141.7 16.2 148 15-170 242-395 (742)
182 cd04163 Era Era subfamily. Er 99.8 1.8E-18 3.8E-23 118.0 14.3 143 17-170 3-154 (168)
183 PRK12298 obgE GTPase CgtA; Rev 99.8 9.4E-19 2E-23 134.6 13.9 147 18-170 160-318 (390)
184 PRK15467 ethanolamine utilizat 99.8 5.9E-19 1.3E-23 120.5 11.3 126 19-170 3-132 (158)
185 PRK05306 infB translation init 99.8 2.2E-18 4.8E-23 141.5 16.4 146 15-170 288-437 (787)
186 COG1159 Era GTPase [General fu 99.8 3.3E-19 7.2E-24 129.4 10.2 144 16-170 5-157 (298)
187 PRK00454 engB GTP-binding prot 99.8 1.4E-18 3.1E-23 122.3 13.0 147 13-170 20-179 (196)
188 cd00880 Era_like Era (E. coli 99.8 1.7E-18 3.7E-23 117.0 12.2 141 22-170 1-149 (163)
189 PRK00093 GTP-binding protein D 99.8 5.1E-18 1.1E-22 133.0 15.7 138 18-170 2-147 (435)
190 PRK09518 bifunctional cytidyla 99.8 2.8E-18 6.1E-23 141.2 14.8 146 17-170 450-606 (712)
191 TIGR00475 selB selenocysteine- 99.8 1.5E-18 3.3E-23 139.6 12.8 144 18-170 1-151 (581)
192 PRK00089 era GTPase Era; Revie 99.8 2.7E-18 5.9E-23 128.1 13.3 143 16-170 4-156 (292)
193 PRK10218 GTP-binding protein; 99.8 5.4E-18 1.2E-22 136.3 15.9 149 17-170 5-170 (607)
194 PRK11058 GTPase HflX; Provisio 99.8 7.8E-18 1.7E-22 130.8 16.2 140 18-170 198-347 (426)
195 TIGR01394 TypA_BipA GTP-bindin 99.8 4.7E-18 1E-22 136.7 14.5 147 19-170 3-166 (594)
196 TIGR03680 eif2g_arch translati 99.8 2.3E-18 5E-23 133.6 12.1 151 14-170 1-181 (406)
197 KOG1489 Predicted GTP-binding 99.8 3.4E-18 7.4E-23 124.7 11.9 144 16-170 195-352 (366)
198 PRK12736 elongation factor Tu; 99.8 8.4E-18 1.8E-22 130.0 14.9 152 14-170 9-178 (394)
199 CHL00071 tufA elongation facto 99.8 8.7E-18 1.9E-22 130.5 15.0 152 14-170 9-178 (409)
200 PRK05433 GTP-binding protein L 99.8 1.8E-17 3.9E-22 133.7 17.2 145 16-170 6-169 (600)
201 TIGR03594 GTPase_EngA ribosome 99.8 8.2E-18 1.8E-22 131.7 14.3 137 19-170 1-145 (429)
202 TIGR00491 aIF-2 translation in 99.8 8E-18 1.7E-22 135.0 14.0 115 18-139 5-135 (590)
203 cd04169 RF3 RF3 subfamily. Pe 99.8 2.7E-17 5.8E-22 121.0 15.5 129 18-151 3-152 (267)
204 PRK12735 elongation factor Tu; 99.8 1.7E-17 3.7E-22 128.4 15.1 152 14-170 9-178 (396)
205 TIGR00485 EF-Tu translation el 99.8 1.5E-17 3.3E-22 128.7 14.5 152 14-170 9-178 (394)
206 PRK04000 translation initiatio 99.8 6.1E-18 1.3E-22 131.3 12.3 153 12-170 4-186 (411)
207 PLN00043 elongation factor 1-a 99.8 1.3E-17 2.7E-22 130.6 13.9 153 14-170 4-198 (447)
208 PLN03126 Elongation factor Tu; 99.8 1.7E-17 3.6E-22 130.5 14.4 152 14-170 78-247 (478)
209 cd01886 EF-G Elongation factor 99.8 6.1E-17 1.3E-21 119.2 16.5 142 19-169 1-159 (270)
210 COG1160 Predicted GTPases [Gen 99.8 8.9E-18 1.9E-22 128.2 12.0 146 17-170 178-336 (444)
211 cd04168 TetM_like Tet(M)-like 99.8 5.8E-17 1.3E-21 117.3 15.3 117 19-140 1-131 (237)
212 PRK09554 feoB ferrous iron tra 99.8 2.3E-17 5.1E-22 135.9 14.4 140 16-170 2-153 (772)
213 PRK04004 translation initiatio 99.8 2.7E-17 5.8E-22 132.3 14.1 113 16-138 5-136 (586)
214 PF09439 SRPRB: Signal recogni 99.7 7.7E-18 1.7E-22 116.0 9.0 127 17-151 3-138 (181)
215 COG0486 ThdF Predicted GTPase 99.7 4.8E-17 1E-21 124.5 14.1 135 15-170 215-361 (454)
216 COG1084 Predicted GTPase [Gene 99.7 4.6E-17 1E-21 119.5 12.8 129 16-151 167-306 (346)
217 PRK05124 cysN sulfate adenylyl 99.7 4.4E-17 9.6E-22 128.4 13.8 153 13-170 23-210 (474)
218 PTZ00141 elongation factor 1- 99.7 3.9E-17 8.4E-22 127.9 13.3 153 14-170 4-198 (446)
219 cd01885 EF2 EF2 (for archaea a 99.7 1.8E-16 3.8E-21 113.6 15.5 115 19-138 2-138 (222)
220 PRK00049 elongation factor Tu; 99.7 8.1E-17 1.8E-21 124.6 14.6 152 14-170 9-178 (396)
221 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 6.9E-18 1.5E-22 114.5 7.5 142 16-170 9-154 (216)
222 cd01896 DRG The developmentall 99.7 8.1E-17 1.7E-21 116.4 13.6 83 19-105 2-91 (233)
223 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.2E-17 4.8E-22 118.3 10.2 145 19-167 1-159 (232)
224 TIGR02034 CysN sulfate adenyly 99.7 8.1E-17 1.8E-21 125.0 13.9 149 18-170 1-182 (406)
225 PRK09518 bifunctional cytidyla 99.7 1.4E-16 3E-21 131.3 15.2 140 16-170 274-421 (712)
226 TIGR00437 feoB ferrous iron tr 99.7 4.1E-17 8.8E-22 131.6 11.7 132 24-170 1-140 (591)
227 PRK10512 selenocysteinyl-tRNA- 99.7 1.3E-16 2.8E-21 129.0 14.4 145 19-170 2-151 (614)
228 PRK05506 bifunctional sulfate 99.7 1E-16 2.2E-21 130.6 13.7 158 9-170 16-206 (632)
229 cd04167 Snu114p Snu114p subfam 99.7 2.2E-16 4.8E-21 112.8 13.8 115 19-138 2-136 (213)
230 COG1160 Predicted GTPases [Gen 99.7 8.7E-17 1.9E-21 122.8 11.8 138 18-170 4-150 (444)
231 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.4E-16 5.1E-21 113.2 13.0 147 19-170 1-208 (224)
232 PLN03127 Elongation factor Tu; 99.7 2.9E-16 6.4E-21 122.8 14.5 152 13-169 57-226 (447)
233 cd01876 YihA_EngB The YihA (En 99.7 2.8E-16 6.1E-21 107.4 12.0 138 19-170 1-156 (170)
234 KOG3883 Ras family small GTPas 99.7 8.8E-16 1.9E-20 101.0 13.5 144 16-168 8-158 (198)
235 COG5256 TEF1 Translation elong 99.7 2.6E-17 5.6E-22 124.0 7.3 157 14-170 4-196 (428)
236 TIGR00484 EF-G translation elo 99.7 1.3E-15 2.8E-20 125.3 17.0 149 16-170 9-171 (689)
237 KOG0077 Vesicle coat complex C 99.7 2.3E-16 5E-21 104.9 10.1 130 15-151 18-147 (193)
238 PF01926 MMR_HSR1: 50S ribosom 99.7 1.7E-15 3.7E-20 98.2 13.8 107 19-134 1-116 (116)
239 cd04170 EF-G_bact Elongation f 99.7 1.2E-15 2.5E-20 112.6 14.4 117 19-140 1-131 (268)
240 KOG1707 Predicted Ras related/ 99.7 9.4E-17 2E-21 125.1 8.3 146 14-169 6-159 (625)
241 COG0532 InfB Translation initi 99.7 1.2E-15 2.6E-20 118.4 13.5 145 16-170 4-155 (509)
242 PTZ00327 eukaryotic translatio 99.7 7.4E-16 1.6E-20 120.6 11.6 155 12-170 29-218 (460)
243 cd04104 p47_IIGP_like p47 (47- 99.7 9.4E-16 2E-20 108.3 10.8 113 17-138 1-120 (197)
244 KOG1673 Ras GTPases [General f 99.7 1.4E-16 2.9E-21 105.0 6.0 149 13-169 16-170 (205)
245 COG0536 Obg Predicted GTPase [ 99.7 1.5E-15 3.1E-20 112.2 11.9 131 18-151 160-302 (369)
246 PF10662 PduV-EutP: Ethanolami 99.7 1.5E-15 3.2E-20 100.6 10.8 123 19-170 3-131 (143)
247 KOG1145 Mitochondrial translat 99.7 8.7E-16 1.9E-20 119.1 11.2 146 16-170 152-301 (683)
248 PRK00741 prfC peptide chain re 99.7 1.1E-15 2.4E-20 121.6 11.8 131 16-151 9-160 (526)
249 PRK12739 elongation factor G; 99.6 9.5E-15 2.1E-19 120.2 16.3 122 15-141 6-141 (691)
250 cd01850 CDC_Septin CDC/Septin. 99.6 1.7E-15 3.7E-20 111.9 10.4 121 16-141 3-159 (276)
251 COG0370 FeoB Fe2+ transport sy 99.6 5.3E-15 1.2E-19 117.8 13.3 136 16-170 2-149 (653)
252 TIGR00503 prfC peptide chain r 99.6 1.1E-14 2.3E-19 116.1 15.1 132 15-151 9-161 (527)
253 PRK00007 elongation factor G; 99.6 1.4E-14 3.1E-19 119.1 16.2 150 15-170 8-171 (693)
254 COG0218 Predicted GTPase [Gene 99.6 1.1E-14 2.4E-19 100.7 12.9 121 13-143 20-153 (200)
255 PRK13351 elongation factor G; 99.6 1.4E-14 2.9E-19 119.4 15.8 121 15-140 6-140 (687)
256 KOG0090 Signal recognition par 99.6 8.2E-15 1.8E-19 101.6 11.9 124 14-144 35-164 (238)
257 KOG0462 Elongation factor-type 99.6 5.9E-15 1.3E-19 114.6 12.4 149 15-170 58-220 (650)
258 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 7.1E-15 1.5E-19 103.7 12.0 120 18-141 1-132 (196)
259 COG2262 HflX GTPases [General 99.6 1.4E-14 3E-19 109.5 13.3 142 15-170 190-341 (411)
260 cd01899 Ygr210 Ygr210 subfamil 99.6 2.4E-14 5.1E-19 107.5 13.0 83 20-102 1-110 (318)
261 COG1163 DRG Predicted GTPase [ 99.6 2.7E-14 5.9E-19 104.8 11.5 87 16-106 62-155 (365)
262 PRK09866 hypothetical protein; 99.6 1.4E-13 3.1E-18 109.7 15.3 100 68-170 230-338 (741)
263 cd00066 G-alpha G protein alph 99.6 8.8E-14 1.9E-18 104.8 12.1 85 54-138 147-241 (317)
264 smart00275 G_alpha G protein a 99.6 9.3E-14 2E-18 105.5 12.2 85 54-138 170-264 (342)
265 cd01853 Toc34_like Toc34-like 99.5 1.6E-13 3.4E-18 99.9 12.4 124 14-140 28-164 (249)
266 KOG1490 GTP-binding protein CR 99.5 1.1E-14 2.4E-19 112.1 6.3 148 16-169 167-325 (620)
267 PF05049 IIGP: Interferon-indu 99.5 6.2E-14 1.3E-18 106.4 10.2 115 15-137 33-153 (376)
268 PF04548 AIG1: AIG1 family; I 99.5 1.7E-13 3.6E-18 97.8 11.8 121 18-142 1-133 (212)
269 COG3596 Predicted GTPase [Gene 99.5 4.7E-14 1E-18 101.6 8.4 121 13-140 35-163 (296)
270 TIGR00490 aEF-2 translation el 99.5 2.2E-13 4.8E-18 112.6 13.2 131 15-150 17-166 (720)
271 cd01882 BMS1 Bms1. Bms1 is an 99.5 2.6E-13 5.7E-18 97.7 11.5 141 15-170 37-181 (225)
272 KOG1191 Mitochondrial GTPase [ 99.5 1.8E-13 4E-18 105.2 10.8 152 15-170 266-435 (531)
273 COG0481 LepA Membrane GTPase L 99.5 1.2E-13 2.6E-18 105.9 9.8 145 16-170 8-171 (603)
274 COG2895 CysN GTPases - Sulfate 99.5 1E-13 2.2E-18 102.9 8.2 153 14-170 3-188 (431)
275 COG5257 GCD11 Translation init 99.5 5.9E-14 1.3E-18 103.0 6.5 151 15-170 8-187 (415)
276 KOG1423 Ras-like GTPase ERA [C 99.5 1.1E-12 2.3E-17 95.9 12.3 116 15-139 70-199 (379)
277 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.4E-12 5.1E-17 95.6 14.3 123 14-139 35-167 (313)
278 KOG4423 GTP-binding protein-li 99.5 4.6E-16 1E-20 105.4 -4.9 145 16-170 24-179 (229)
279 PRK12740 elongation factor G; 99.4 3.1E-12 6.6E-17 105.4 14.1 114 23-141 1-128 (668)
280 PF00350 Dynamin_N: Dynamin fa 99.4 3.6E-12 7.9E-17 87.6 11.6 63 69-135 102-168 (168)
281 PTZ00258 GTP-binding protein; 99.4 4.7E-12 1E-16 97.1 12.8 86 13-102 17-126 (390)
282 PRK07560 elongation factor EF- 99.4 6.6E-12 1.4E-16 104.1 14.2 119 16-139 19-153 (731)
283 PLN00116 translation elongatio 99.4 6.1E-12 1.3E-16 105.6 14.0 119 15-138 17-163 (843)
284 PTZ00416 elongation factor 2; 99.4 4.1E-12 8.8E-17 106.5 12.4 118 16-138 18-157 (836)
285 PF03029 ATP_bind_1: Conserved 99.4 4.4E-13 9.5E-18 97.0 5.5 70 69-139 92-170 (238)
286 COG1217 TypA Predicted membran 99.4 1E-11 2.2E-16 95.3 12.7 149 17-170 5-170 (603)
287 COG0050 TufB GTPases - transla 99.4 4.1E-12 8.9E-17 92.5 9.4 157 7-169 4-177 (394)
288 PRK14845 translation initiatio 99.4 7.2E-12 1.6E-16 105.8 12.2 105 28-139 472-592 (1049)
289 PRK09601 GTP-binding protein Y 99.4 2.3E-11 5.1E-16 92.4 13.6 81 18-102 3-107 (364)
290 PRK13768 GTPase; Provisional 99.4 6.2E-12 1.3E-16 92.0 10.0 83 68-151 97-188 (253)
291 KOG0458 Elongation factor 1 al 99.4 2.6E-12 5.6E-17 100.7 8.0 157 12-170 172-367 (603)
292 PF00735 Septin: Septin; Inte 99.4 1.3E-11 2.8E-16 91.4 10.9 129 17-150 4-167 (281)
293 KOG0082 G-protein alpha subuni 99.3 1.3E-11 2.7E-16 92.9 10.7 87 53-139 180-276 (354)
294 KOG3886 GTP-binding protein [S 99.3 2.6E-12 5.5E-17 90.5 5.8 123 18-145 5-136 (295)
295 PRK09435 membrane ATPase/prote 99.3 8.8E-12 1.9E-16 94.0 8.5 145 14-170 53-245 (332)
296 TIGR00993 3a0901s04IAP86 chlor 99.3 5.6E-11 1.2E-15 95.4 12.8 121 17-140 118-251 (763)
297 PF03308 ArgK: ArgK protein; 99.3 9.9E-12 2.2E-16 89.5 7.7 151 4-170 18-215 (266)
298 KOG0461 Selenocysteine-specifi 99.3 4.4E-11 9.6E-16 88.9 11.0 149 15-170 5-174 (522)
299 COG0480 FusA Translation elong 99.3 3E-11 6.4E-16 98.7 10.9 132 15-151 8-157 (697)
300 TIGR02836 spore_IV_A stage IV 99.3 1.9E-10 4.2E-15 88.0 13.8 121 13-137 13-192 (492)
301 PRK09602 translation-associate 99.3 8.1E-11 1.7E-15 91.1 11.0 85 18-102 2-113 (396)
302 COG0012 Predicted GTPase, prob 99.2 1.7E-10 3.8E-15 86.8 10.6 86 17-102 2-108 (372)
303 COG5019 CDC3 Septin family pro 99.2 2.6E-10 5.7E-15 85.4 10.9 131 15-150 21-187 (373)
304 smart00053 DYNc Dynamin, GTPas 99.2 3.2E-10 6.9E-15 82.0 10.5 78 68-151 125-216 (240)
305 smart00010 small_GTPase Small 99.2 5E-11 1.1E-15 77.6 5.6 90 18-139 1-91 (124)
306 COG4917 EutP Ethanolamine util 99.2 1.1E-10 2.3E-15 74.8 6.7 123 19-169 3-130 (148)
307 KOG0460 Mitochondrial translat 99.2 1.1E-10 2.5E-15 86.5 7.9 152 13-168 50-218 (449)
308 PF00503 G-alpha: G-protein al 99.2 1.4E-10 3.1E-15 89.9 8.6 85 54-138 221-316 (389)
309 COG4108 PrfC Peptide chain rel 99.1 2.8E-10 6.1E-15 87.0 9.1 132 18-154 13-165 (528)
310 KOG2655 Septin family protein 99.1 6.2E-10 1.3E-14 83.9 10.8 124 16-145 20-178 (366)
311 KOG1532 GTPase XAB1, interacts 99.1 2.3E-10 5E-15 82.8 7.1 70 68-140 116-196 (366)
312 TIGR00750 lao LAO/AO transport 99.1 1.5E-09 3.2E-14 81.4 11.7 92 67-170 126-223 (300)
313 COG3276 SelB Selenocysteine-sp 99.1 7.4E-10 1.6E-14 84.8 10.0 146 19-170 2-147 (447)
314 cd01900 YchF YchF subfamily. 99.1 4.6E-10 1E-14 82.7 7.8 79 20-102 1-103 (274)
315 KOG1547 Septin CDC10 and relat 99.1 1.4E-09 3.1E-14 77.3 9.0 131 15-151 44-210 (336)
316 KOG0468 U5 snRNP-specific prot 99.1 1.8E-09 3.9E-14 86.3 10.1 117 17-138 128-262 (971)
317 KOG3887 Predicted small GTPase 99.1 9.3E-10 2E-14 78.3 7.7 146 18-167 28-185 (347)
318 TIGR00101 ureG urease accessor 99.0 6.6E-09 1.4E-13 73.5 11.4 88 68-170 92-181 (199)
319 COG1703 ArgK Putative periplas 99.0 4.1E-09 8.8E-14 77.3 9.9 90 67-170 143-239 (323)
320 KOG0466 Translation initiation 99.0 1.2E-10 2.6E-15 85.4 1.1 152 12-169 33-225 (466)
321 TIGR00073 hypB hydrogenase acc 99.0 3.1E-09 6.6E-14 75.7 8.3 143 13-170 18-192 (207)
322 KOG1144 Translation initiation 99.0 8.6E-10 1.9E-14 89.0 5.1 113 18-137 476-604 (1064)
323 KOG1707 Predicted Ras related/ 99.0 1.5E-08 3.2E-13 80.0 11.8 131 14-151 422-557 (625)
324 KOG0447 Dynamin-like GTP bindi 99.0 3.7E-08 8E-13 77.7 13.6 94 69-165 413-521 (980)
325 KOG1954 Endocytosis/signaling 98.9 2.2E-08 4.8E-13 75.4 11.8 119 18-143 59-229 (532)
326 KOG0085 G protein subunit Galp 98.9 4.6E-10 1E-14 79.5 2.7 87 53-139 184-280 (359)
327 TIGR00157 ribosome small subun 98.9 3.7E-09 7.9E-14 77.1 6.9 83 79-170 24-108 (245)
328 PRK10463 hydrogenase nickel in 98.9 1.3E-09 2.9E-14 80.5 4.0 33 8-40 95-127 (290)
329 KOG1486 GTP-binding protein DR 98.9 9.4E-09 2E-13 73.7 7.7 117 16-136 61-185 (364)
330 KOG0099 G protein subunit Galp 98.8 1.8E-08 4E-13 72.6 7.7 85 55-139 189-283 (379)
331 KOG0705 GTPase-activating prot 98.8 2.7E-09 5.8E-14 83.7 3.4 150 6-170 19-174 (749)
332 TIGR00092 GTP-binding protein 98.8 5.6E-08 1.2E-12 74.2 9.8 85 18-102 3-108 (368)
333 cd01858 NGP_1 NGP-1. Autoanti 98.8 4.9E-08 1.1E-12 66.5 7.9 56 16-77 101-156 (157)
334 KOG0410 Predicted GTP binding 98.8 3.3E-08 7.2E-13 73.3 7.3 120 15-139 176-308 (410)
335 KOG0448 Mitofusin 1 GTPase, in 98.8 2.1E-07 4.6E-12 74.9 12.3 67 69-140 207-276 (749)
336 cd01855 YqeH YqeH. YqeH is an 98.8 3.8E-08 8.3E-13 69.0 7.2 61 16-77 126-189 (190)
337 KOG3859 Septins (P-loop GTPase 98.7 3E-08 6.4E-13 72.2 6.3 120 16-142 41-193 (406)
338 KOG3905 Dynein light intermedi 98.7 4.8E-07 1E-11 67.4 12.6 89 16-113 51-150 (473)
339 cd04178 Nucleostemin_like Nucl 98.7 3.4E-08 7.3E-13 68.3 6.4 56 16-77 116-171 (172)
340 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.1E-08 1.1E-12 65.2 6.5 54 19-78 85-138 (141)
341 cd01851 GBP Guanylate-binding 98.7 9.4E-07 2E-11 63.7 13.2 92 14-106 4-106 (224)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.7E-08 1.2E-12 64.9 6.3 76 85-170 5-82 (141)
343 KOG0467 Translation elongation 98.7 5.4E-08 1.2E-12 79.0 6.9 118 15-137 7-136 (887)
344 PF05783 DLIC: Dynein light in 98.7 1E-06 2.2E-11 69.7 13.7 83 16-107 24-116 (472)
345 KOG1143 Predicted translation 98.6 2.1E-07 4.5E-12 70.5 8.5 122 16-142 166-320 (591)
346 KOG0464 Elongation factor G [T 98.6 1.2E-08 2.5E-13 78.1 1.3 129 18-151 38-183 (753)
347 KOG2486 Predicted GTPase [Gene 98.6 1.5E-07 3.3E-12 68.4 6.6 146 15-169 134-300 (320)
348 COG5258 GTPBP1 GTPase [General 98.6 2.6E-07 5.6E-12 70.1 8.0 123 15-142 115-272 (527)
349 KOG0459 Polypeptide release fa 98.6 1.4E-08 3E-13 77.1 0.7 156 15-170 77-271 (501)
350 TIGR03597 GTPase_YqeH ribosome 98.6 2E-07 4.3E-12 71.7 7.0 129 17-151 154-292 (360)
351 KOG1491 Predicted GTP-binding 98.6 4.2E-07 9.2E-12 67.9 8.3 84 15-102 18-125 (391)
352 cd01859 MJ1464 MJ1464. This f 98.6 9.4E-08 2E-12 64.9 4.5 78 83-170 4-81 (156)
353 cd01856 YlqF YlqF. Proteins o 98.5 3.3E-07 7.2E-12 63.2 6.8 56 16-77 114-169 (171)
354 TIGR03596 GTPase_YlqF ribosome 98.5 3.4E-07 7.4E-12 68.0 7.0 58 15-78 116-173 (276)
355 COG5192 BMS1 GTP-binding prote 98.5 7.3E-07 1.6E-11 70.9 8.6 122 16-151 68-190 (1077)
356 COG0378 HypB Ni2+-binding GTPa 98.5 3.6E-08 7.8E-13 68.2 1.2 41 127-170 144-186 (202)
357 TIGR03348 VI_IcmF type VI secr 98.5 5.8E-07 1.3E-11 78.5 8.7 114 20-139 114-257 (1169)
358 PRK09563 rbgA GTPase YlqF; Rev 98.5 5.8E-07 1.3E-11 67.1 7.3 57 15-77 119-175 (287)
359 cd01849 YlqF_related_GTPase Yl 98.5 4.2E-07 9.2E-12 61.7 6.1 57 15-77 98-154 (155)
360 PRK12289 GTPase RsgA; Reviewed 98.5 6.7E-07 1.5E-11 68.4 7.5 74 88-170 86-160 (352)
361 cd01854 YjeQ_engC YjeQ/EngC. 98.5 4.7E-07 1E-11 67.6 6.6 76 86-170 73-149 (287)
362 cd03112 CobW_like The function 98.5 2.8E-06 6.1E-11 57.9 9.7 63 68-137 87-158 (158)
363 COG1161 Predicted GTPases [Gen 98.5 5.2E-07 1.1E-11 68.3 6.5 57 15-77 130-186 (322)
364 cd01859 MJ1464 MJ1464. This f 98.4 9.8E-07 2.1E-11 59.9 7.0 54 16-77 100-155 (156)
365 TIGR01425 SRP54_euk signal rec 98.4 4.7E-06 1E-10 65.1 11.4 116 17-139 100-253 (429)
366 PF03193 DUF258: Protein of un 98.4 3.1E-07 6.8E-12 62.4 4.3 22 18-39 36-57 (161)
367 PRK00098 GTPase RsgA; Reviewed 98.4 5.8E-07 1.3E-11 67.4 6.0 74 88-170 77-152 (298)
368 PRK12288 GTPase RsgA; Reviewed 98.4 8.2E-07 1.8E-11 67.9 6.8 20 20-39 208-227 (347)
369 TIGR00157 ribosome small subun 98.4 9.7E-07 2.1E-11 64.4 6.7 67 6-79 112-182 (245)
370 cd01855 YqeH YqeH. YqeH is an 98.4 8.8E-07 1.9E-11 62.1 5.6 83 81-170 24-110 (190)
371 PRK13796 GTPase YqeH; Provisio 98.4 9.8E-07 2.1E-11 68.0 6.1 61 17-78 160-220 (365)
372 cd03114 ArgK-like The function 98.3 9.2E-06 2E-10 54.8 9.8 58 67-136 91-148 (148)
373 KOG1534 Putative transcription 98.3 1.6E-06 3.5E-11 60.9 6.1 79 69-151 99-190 (273)
374 PRK12289 GTPase RsgA; Reviewed 98.3 1.5E-06 3.3E-11 66.5 6.6 20 20-39 175-194 (352)
375 COG1618 Predicted nucleotide k 98.3 1E-05 2.2E-10 54.6 9.1 25 15-39 3-27 (179)
376 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.7E-06 5.8E-11 57.8 6.1 76 88-170 5-80 (157)
377 PF00448 SRP54: SRP54-type pro 98.2 2.2E-05 4.8E-10 55.4 10.3 113 19-139 3-154 (196)
378 KOG1487 GTP-binding protein DR 98.2 2.1E-06 4.5E-11 62.2 4.9 89 17-109 59-154 (358)
379 KOG0463 GTP-binding protein GP 98.2 1.8E-06 3.9E-11 65.6 4.7 78 68-150 219-298 (641)
380 cd01854 YjeQ_engC YjeQ/EngC. 98.2 3.3E-06 7.2E-11 63.1 6.0 63 18-81 162-226 (287)
381 cd01856 YlqF YlqF. Proteins o 98.2 2.3E-06 4.9E-11 59.1 4.8 77 82-170 10-86 (171)
382 cd01849 YlqF_related_GTPase Yl 98.2 3.8E-06 8.3E-11 57.0 5.7 69 93-170 1-70 (155)
383 PRK10416 signal recognition pa 98.2 3.1E-05 6.7E-10 58.7 10.6 24 17-40 114-137 (318)
384 KOG0465 Mitochondrial elongati 98.2 1.6E-06 3.5E-11 69.2 3.4 129 16-149 38-180 (721)
385 PRK12288 GTPase RsgA; Reviewed 98.2 1.2E-05 2.6E-10 61.6 8.0 76 89-170 118-193 (347)
386 PRK14722 flhF flagellar biosyn 98.1 2.4E-05 5.1E-10 60.3 9.5 22 18-39 138-159 (374)
387 PRK14974 cell division protein 98.1 4.8E-06 1E-10 63.3 5.6 118 16-140 139-294 (336)
388 TIGR03596 GTPase_YlqF ribosome 98.1 5.3E-06 1.2E-10 61.6 5.3 76 83-170 13-88 (276)
389 COG1162 Predicted GTPases [Gen 98.1 4.4E-06 9.6E-11 61.9 4.7 21 19-39 166-186 (301)
390 cd03115 SRP The signal recogni 98.1 1.2E-05 2.5E-10 55.6 6.6 66 67-139 82-153 (173)
391 TIGR00064 ftsY signal recognit 98.1 6.9E-05 1.5E-09 55.6 11.0 67 66-139 153-231 (272)
392 PF09547 Spore_IV_A: Stage IV 98.1 5.2E-05 1.1E-09 58.8 10.4 64 14-77 14-100 (492)
393 PF02492 cobW: CobW/HypB/UreG, 98.1 1.5E-05 3.2E-10 55.4 6.8 78 68-151 85-168 (178)
394 TIGR03597 GTPase_YqeH ribosome 98.1 2.9E-06 6.2E-11 65.4 3.2 84 78-170 50-138 (360)
395 PRK00098 GTPase RsgA; Reviewed 98.1 1.5E-05 3.3E-10 59.8 6.9 23 18-40 165-187 (298)
396 PRK12727 flagellar biosynthesi 98.1 0.00013 2.9E-09 58.4 12.2 116 17-139 350-498 (559)
397 KOG1533 Predicted GTPase [Gene 98.0 1.2E-05 2.6E-10 57.5 5.4 69 68-139 97-177 (290)
398 COG3640 CooC CO dehydrogenase 98.0 8.1E-05 1.8E-09 53.3 9.3 63 69-138 135-198 (255)
399 KOG0469 Elongation factor 2 [T 98.0 9.8E-06 2.1E-10 63.8 5.1 141 6-151 7-179 (842)
400 COG1419 FlhF Flagellar GTP-bin 98.0 1.5E-05 3.2E-10 61.4 5.5 116 17-139 203-352 (407)
401 KOG1424 Predicted GTP-binding 98.0 4.4E-06 9.5E-11 65.6 2.5 59 13-77 310-368 (562)
402 PRK09563 rbgA GTPase YlqF; Rev 98.0 2.2E-05 4.8E-10 58.7 5.9 76 83-170 16-91 (287)
403 PRK11537 putative GTP-binding 97.9 0.00017 3.7E-09 54.7 10.6 75 68-151 91-174 (318)
404 KOG2485 Conserved ATP/GTP bind 97.9 2.8E-05 6.2E-10 57.7 6.1 63 15-77 141-205 (335)
405 PRK11889 flhF flagellar biosyn 97.9 0.00012 2.6E-09 56.7 9.7 115 18-139 242-391 (436)
406 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00045 9.7E-09 42.3 10.6 97 20-133 2-99 (99)
407 COG0523 Putative GTPases (G3E 97.9 0.00035 7.5E-09 53.0 11.5 78 68-151 85-171 (323)
408 PRK14721 flhF flagellar biosyn 97.9 4.7E-05 1E-09 59.6 6.9 23 17-39 191-213 (420)
409 PRK05703 flhF flagellar biosyn 97.9 0.00037 8E-09 54.9 11.9 115 18-139 222-371 (424)
410 PRK12724 flagellar biosynthesi 97.9 0.00011 2.3E-09 57.4 8.6 23 17-39 223-245 (432)
411 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00013 2.9E-09 40.5 6.3 45 90-136 12-58 (58)
412 TIGR00959 ffh signal recogniti 97.8 0.00083 1.8E-08 52.9 13.0 66 67-139 182-253 (428)
413 PRK12726 flagellar biosynthesi 97.8 0.00012 2.6E-09 56.5 7.8 23 17-39 206-228 (407)
414 PRK10867 signal recognition pa 97.8 0.00029 6.4E-09 55.4 10.1 66 67-139 183-254 (433)
415 cd00009 AAA The AAA+ (ATPases 97.8 0.00089 1.9E-08 44.0 11.3 32 8-39 10-41 (151)
416 TIGR02475 CobW cobalamin biosy 97.8 0.0003 6.6E-09 53.9 9.7 77 68-151 93-199 (341)
417 PF13401 AAA_22: AAA domain; P 97.8 5.4E-05 1.2E-09 49.5 4.9 22 18-39 5-26 (131)
418 COG3523 IcmF Type VI protein s 97.8 0.0001 2.2E-09 64.0 7.2 115 20-139 128-270 (1188)
419 cd02038 FleN-like FleN is a me 97.7 0.00066 1.4E-08 45.2 9.8 102 21-137 4-109 (139)
420 PRK00771 signal recognition pa 97.7 0.00038 8.2E-09 54.9 9.7 117 16-139 94-246 (437)
421 PF13207 AAA_17: AAA domain; P 97.7 3.7E-05 8.1E-10 49.7 3.3 21 19-39 1-21 (121)
422 COG0541 Ffh Signal recognition 97.7 0.00037 8.1E-09 54.2 9.1 103 14-117 97-238 (451)
423 PRK12723 flagellar biosynthesi 97.7 0.0006 1.3E-08 53.0 9.9 116 17-139 174-326 (388)
424 cd03222 ABC_RNaseL_inhibitor T 97.6 0.0007 1.5E-08 47.0 8.9 25 16-40 24-48 (177)
425 cd03111 CpaE_like This protein 97.6 0.0019 4.2E-08 40.9 10.1 100 23-134 6-106 (106)
426 PRK14723 flhF flagellar biosyn 97.6 0.00024 5.2E-09 59.3 7.3 23 18-40 186-208 (767)
427 PRK08118 topology modulation p 97.6 5.9E-05 1.3E-09 51.9 3.2 22 18-39 2-23 (167)
428 cd02036 MinD Bacterial cell di 97.6 0.0035 7.5E-08 43.1 12.1 66 69-140 64-129 (179)
429 COG0563 Adk Adenylate kinase a 97.6 5.8E-05 1.3E-09 52.4 3.1 22 18-39 1-22 (178)
430 PRK07261 topology modulation p 97.6 6.2E-05 1.3E-09 52.0 3.2 22 18-39 1-22 (171)
431 PF13555 AAA_29: P-loop contai 97.6 7.8E-05 1.7E-09 42.4 2.9 21 19-39 25-45 (62)
432 cd02042 ParA ParA and ParB of 97.6 0.0015 3.2E-08 41.0 9.2 81 20-115 2-84 (104)
433 COG1136 SalX ABC-type antimicr 97.6 7.3E-05 1.6E-09 53.6 3.3 22 19-40 33-54 (226)
434 PF05729 NACHT: NACHT domain 97.5 0.00039 8.4E-09 47.1 6.4 20 20-39 3-22 (166)
435 PRK01889 GTPase RsgA; Reviewed 97.5 0.00055 1.2E-08 52.8 7.7 73 89-170 110-182 (356)
436 KOG2484 GTPase [General functi 97.5 0.00021 4.5E-09 54.8 5.2 63 86-151 141-203 (435)
437 PF13671 AAA_33: AAA domain; P 97.5 0.0001 2.2E-09 49.0 3.1 20 20-39 2-21 (143)
438 PRK06995 flhF flagellar biosyn 97.5 0.00032 6.9E-09 55.9 5.9 23 18-40 257-279 (484)
439 PRK06731 flhF flagellar biosyn 97.5 0.00045 9.8E-09 51.1 6.4 116 17-139 75-225 (270)
440 COG1126 GlnQ ABC-type polar am 97.5 0.00011 2.4E-09 52.1 3.0 22 18-39 29-50 (240)
441 KOG2423 Nucleolar GTPase [Gene 97.4 0.00017 3.6E-09 55.5 3.9 34 6-39 296-329 (572)
442 PRK13796 GTPase YqeH; Provisio 97.4 0.0002 4.3E-09 55.4 4.3 81 80-170 58-144 (365)
443 PF05621 TniB: Bacterial TniB 97.4 0.0019 4E-08 48.3 9.1 113 7-135 51-190 (302)
444 KOG2484 GTPase [General functi 97.4 0.00031 6.7E-09 53.9 5.0 57 15-77 250-306 (435)
445 cd02019 NK Nucleoside/nucleoti 97.4 0.00018 3.9E-09 41.9 3.0 20 20-39 2-21 (69)
446 COG1116 TauB ABC-type nitrate/ 97.4 0.00016 3.4E-09 52.3 3.2 28 19-46 31-58 (248)
447 COG1124 DppF ABC-type dipeptid 97.4 0.00033 7.2E-09 50.5 4.7 69 18-86 34-102 (252)
448 PF13521 AAA_28: AAA domain; P 97.4 0.00011 2.5E-09 50.1 2.2 21 19-39 1-21 (163)
449 PRK06217 hypothetical protein; 97.4 0.00019 4.2E-09 50.0 3.3 22 18-39 2-23 (183)
450 KOG0780 Signal recognition par 97.4 0.00077 1.7E-08 51.8 6.6 23 17-39 101-123 (483)
451 PRK01889 GTPase RsgA; Reviewed 97.3 0.00031 6.7E-09 54.1 4.4 23 18-40 196-218 (356)
452 PF00005 ABC_tran: ABC transpo 97.3 0.00021 4.6E-09 47.2 3.0 22 18-39 12-33 (137)
453 KOG1424 Predicted GTP-binding 97.3 0.00066 1.4E-08 53.8 5.9 70 89-168 172-243 (562)
454 PRK03839 putative kinase; Prov 97.3 0.00023 5E-09 49.4 3.2 21 19-39 2-22 (180)
455 TIGR00235 udk uridine kinase. 97.3 0.00032 7E-09 49.9 3.8 27 14-40 3-29 (207)
456 PF03266 NTPase_1: NTPase; In 97.3 0.00028 6E-09 48.6 3.2 22 19-40 1-22 (168)
457 COG3840 ThiQ ABC-type thiamine 97.3 0.00027 5.8E-09 49.0 3.0 21 19-39 27-47 (231)
458 PRK05480 uridine/cytidine kina 97.2 0.00035 7.6E-09 49.7 3.7 27 14-40 3-29 (209)
459 PRK10078 ribose 1,5-bisphospho 97.2 0.0003 6.6E-09 49.1 3.1 22 19-40 4-25 (186)
460 PRK14530 adenylate kinase; Pro 97.2 0.00032 6.8E-09 50.2 3.2 22 18-39 4-25 (215)
461 PF13238 AAA_18: AAA domain; P 97.2 0.00034 7.5E-09 45.4 3.1 21 20-40 1-21 (129)
462 PRK06547 hypothetical protein; 97.2 0.00068 1.5E-08 46.9 4.6 28 12-39 10-37 (172)
463 cd04178 Nucleostemin_like Nucl 97.2 0.00054 1.2E-08 47.4 4.1 56 93-151 1-56 (172)
464 PRK08233 hypothetical protein; 97.2 0.00041 8.9E-09 48.0 3.5 24 17-40 3-26 (182)
465 cd00071 GMPK Guanosine monopho 97.2 0.00034 7.4E-09 46.5 3.0 21 20-40 2-22 (137)
466 TIGR02322 phosphon_PhnN phosph 97.2 0.00033 7.2E-09 48.5 3.0 22 19-40 3-24 (179)
467 PF00004 AAA: ATPase family as 97.2 0.00039 8.4E-09 45.3 3.1 20 20-39 1-20 (132)
468 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00039 8.4E-09 49.7 3.3 25 18-42 31-55 (218)
469 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00042 9.2E-09 49.3 3.4 24 18-41 28-51 (211)
470 TIGR00960 3a0501s02 Type II (G 97.2 0.00041 8.8E-09 49.6 3.3 24 18-41 30-53 (216)
471 COG1120 FepC ABC-type cobalami 97.2 0.0004 8.8E-09 50.8 3.3 25 19-43 30-54 (258)
472 PRK09270 nucleoside triphospha 97.2 0.00086 1.9E-08 48.5 5.0 26 15-40 31-56 (229)
473 PRK14532 adenylate kinase; Pro 97.2 0.00041 8.9E-09 48.5 3.2 22 18-39 1-22 (188)
474 TIGR03608 L_ocin_972_ABC putat 97.2 0.00046 9.9E-09 48.9 3.4 24 18-41 25-48 (206)
475 cd02023 UMPK Uridine monophosp 97.2 0.00038 8.3E-09 49.0 3.0 21 20-40 2-22 (198)
476 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00045 9.7E-09 49.0 3.4 24 18-41 27-50 (205)
477 PRK13851 type IV secretion sys 97.1 0.003 6.6E-08 48.4 8.0 26 15-40 160-185 (344)
478 cd03264 ABC_drug_resistance_li 97.1 0.00038 8.2E-09 49.6 3.0 23 19-41 27-49 (211)
479 cd03261 ABC_Org_Solvent_Resist 97.1 0.00044 9.6E-09 50.1 3.3 24 18-41 27-50 (235)
480 TIGR01166 cbiO cobalt transpor 97.1 0.00047 1E-08 48.3 3.3 23 19-41 20-42 (190)
481 smart00382 AAA ATPases associa 97.1 0.00046 1E-08 44.9 3.2 22 18-39 3-24 (148)
482 TIGR02673 FtsE cell division A 97.1 0.00046 1E-08 49.2 3.4 24 18-41 29-52 (214)
483 TIGR02211 LolD_lipo_ex lipopro 97.1 0.0005 1.1E-08 49.2 3.5 25 18-42 32-56 (221)
484 cd03269 ABC_putative_ATPase Th 97.1 0.00049 1.1E-08 48.9 3.4 24 18-41 27-50 (210)
485 cd03258 ABC_MetN_methionine_tr 97.1 0.0005 1.1E-08 49.7 3.5 25 18-42 32-56 (233)
486 PRK13949 shikimate kinase; Pro 97.1 0.00048 1E-08 47.5 3.2 21 19-39 3-23 (169)
487 cd03259 ABC_Carb_Solutes_like 97.1 0.0005 1.1E-08 49.0 3.4 24 18-41 27-50 (213)
488 PF05673 DUF815: Protein of un 97.1 0.0071 1.5E-07 44.0 9.2 28 12-39 47-74 (249)
489 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00043 9.3E-09 43.9 2.7 21 18-38 16-36 (107)
490 TIGR00554 panK_bact pantothena 97.1 0.00079 1.7E-08 50.3 4.5 27 14-40 59-85 (290)
491 cd01130 VirB11-like_ATPase Typ 97.1 0.00087 1.9E-08 46.9 4.5 26 16-41 24-49 (186)
492 cd03292 ABC_FtsE_transporter F 97.1 0.00049 1.1E-08 49.0 3.3 24 18-41 28-51 (214)
493 cd03238 ABC_UvrA The excision 97.1 0.00045 9.7E-09 47.9 3.0 23 16-38 20-42 (176)
494 cd03262 ABC_HisP_GlnQ_permease 97.1 0.00054 1.2E-08 48.8 3.5 24 18-41 27-50 (213)
495 PRK15177 Vi polysaccharide exp 97.1 0.00056 1.2E-08 48.9 3.6 25 18-42 14-38 (213)
496 cd01120 RecA-like_NTPases RecA 97.1 0.013 2.9E-07 39.2 10.3 21 20-40 2-22 (165)
497 cd03224 ABC_TM1139_LivF_branch 97.1 0.0005 1.1E-08 49.3 3.3 24 18-41 27-50 (222)
498 cd03229 ABC_Class3 This class 97.1 0.00056 1.2E-08 47.4 3.4 25 18-42 27-51 (178)
499 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00041 8.8E-09 48.3 2.8 22 18-39 4-25 (188)
500 KOG0781 Signal recognition par 97.1 0.0017 3.7E-08 51.2 6.3 134 5-139 366-544 (587)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.3e-32 Score=190.62 Aligned_cols=163 Identities=36% Similarity=0.680 Sum_probs=137.6
Q ss_pred ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
||.+++.+|...+.++.+||+++|.+|||||||++++.. +... ...||++.....++..+..+.+||+||++.
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCc-cccCCcceeEEEEEECCEEEEEEECCCCHH
Confidence 887787888777778889999999999999999999964 2222 345777777777888889999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
+...+..+++++|++|+|+|++++.++++...++..+......++.|+++++||+|+++....+++.+.+.......+.+
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~ 153 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCce
Confidence 99999999999999999999999999998888888877654446799999999999998888888888887555555667
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
.+++|||++|
T Consensus 154 ~~~~~Sa~~g 163 (181)
T PLN00223 154 YIQSTCATSG 163 (181)
T ss_pred EEEeccCCCC
Confidence 7889999987
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.8e-32 Score=190.35 Aligned_cols=163 Identities=37% Similarity=0.676 Sum_probs=136.5
Q ss_pred ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
||.+++.+++..+.++++||+++|++|+|||||++++.. +... .+.||++.....++..+..+.+||+||++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~------~~~~-~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKL------GEVV-TTIPTIGFNVETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhc------CCcc-ccCCccccceEEEEECCEEEEEEECCCCHh
Confidence 898898999988888999999999999999999999964 2222 234677776667778889999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
+...+..+++.+|++|+|+|++++.++.....++..+.......+.|+++++||.|+++....+++.+.+.........+
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~ 153 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNW 153 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcE
Confidence 99999999999999999999999999998888888876543345789999999999987777777777776555555667
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
.++++||++|
T Consensus 154 ~~~~~Sa~tg 163 (182)
T PTZ00133 154 YIQGCCATTA 163 (182)
T ss_pred EEEeeeCCCC
Confidence 8889999987
No 3
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-33 Score=188.49 Aligned_cols=144 Identities=29% Similarity=0.500 Sum_probs=127.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE----EEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||+|+.|+.. +.+.+.+..|+++.+.. ++++..+++||||+||++++.....|++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR 80 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKD------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYR 80 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhcc------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhcc
Confidence 4568999999999999999999988 88899999999998774 3345678999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeE-EEeeec
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCM-FEAVSG 167 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 167 (170)
.+|++|+|||+++.+||+.+..|+.++-.+.. .++|.++|+||+|+.+ ..+.++.+++.. ..+++ |+|+||
T Consensus 81 ~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~-----~~~~~~f~ETSA 154 (205)
T KOG0084|consen 81 GAHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFAD-----ELGIPIFLETSA 154 (205)
T ss_pred CCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHH-----hcCCcceeeccc
Confidence 99999999999999999999999999977655 6789999999999987 567777777777 66667 999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
|.+
T Consensus 155 K~~ 157 (205)
T KOG0084|consen 155 KDS 157 (205)
T ss_pred CCc
Confidence 974
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=4.7e-31 Score=183.12 Aligned_cols=159 Identities=36% Similarity=0.706 Sum_probs=130.0
Q ss_pred ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
||.+..+. .+++.+||+++|++|+|||||++++.. +.. ..+.||++.....+......+.+||+||++.
T Consensus 1 ~~~~~~~~----~~~~~~ki~l~G~~~~GKTsL~~~~~~------~~~-~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~ 69 (175)
T smart00177 1 MGKLFSKL----FGNKEMRILMVGLDAAGKTTILYKLKL------GES-VTTIPTIGFNVETVTYKNISFTVWDVGGQDK 69 (175)
T ss_pred Cchhhhhh----cCCCccEEEEEcCCCCCHHHHHHHHhc------CCC-CCcCCccccceEEEEECCEEEEEEECCCChh
Confidence 77664444 335679999999999999999999964 222 2345677777666777888999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
+...+..+++++|++|+|+|++++.++++..+++..+......++.|+++++||+|+.+..+.+++.+.+.......+.+
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 149 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNW 149 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcE
Confidence 99999999999999999999999999999999998887654446789999999999988777778877776555556677
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
.++++||++|
T Consensus 150 ~~~~~Sa~~g 159 (175)
T smart00177 150 YIQPTCATSG 159 (175)
T ss_pred EEEEeeCCCC
Confidence 8999999987
No 5
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.98 E-value=7.5e-31 Score=180.97 Aligned_cols=151 Identities=36% Similarity=0.726 Sum_probs=125.1
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
..++.+||+++|++|+|||||++++.. +.. ..+.||++.....+...+..+.+|||||++.+...+..+++++
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~------~~~-~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 77 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKL------GQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT 77 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHcc------CCC-ccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccC
Confidence 446779999999999999999999965 122 2345677776666777889999999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++|+|+|++++.++++...++.++......++.|+++++||+|+.+....+++.+.++........++++++||++|
T Consensus 78 ~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 78 QGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred CEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 999999999999999999888888876544467899999999999877778888888765444445668999999987
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=177.17 Aligned_cols=144 Identities=26% Similarity=0.405 Sum_probs=126.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----ecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
+..|++++|+.++|||||++++.. +.....+.+|+++.+...+ ....++++|||+|||+++.+.+.|+++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~y------d~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMY------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHH------hhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence 448999999999999999999987 6666788889998876433 345789999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+.++|+|||+++..+|+.+..|+.......+..++.+++|+||.||.+ +...+|....++ ..+..|+++||+.
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAk-----el~a~f~etsak~ 169 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAK-----ELNAEFIETSAKA 169 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHH-----HhCcEEEEecccC
Confidence 999999999999999999999999999988766789999999999987 566677776666 7777999999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 170 g 170 (221)
T KOG0094|consen 170 G 170 (221)
T ss_pred C
Confidence 7
No 7
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-30 Score=176.72 Aligned_cols=144 Identities=27% Similarity=0.431 Sum_probs=127.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE--ecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--VSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
..++||+++|+.++|||||+-|+.. +.+.+...+|++.-+.... ..+ .++.||||+|+|++.++.+.|+|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk------~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyR 76 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVK------DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYR 76 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhh------CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceec
Confidence 4679999999999999999999976 6666667788888766433 333 78999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
+++++|+|||+++.+||..++.|..++..... +++-|.+++||+|+.+ +++.++...++. .....|+|+|||
T Consensus 77 gA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe-----~~gll~~ETSAK 150 (200)
T KOG0092|consen 77 GANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAE-----SQGLLFFETSAK 150 (200)
T ss_pred CCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHH-----hcCCEEEEEecc
Confidence 99999999999999999999999999988765 7888888999999987 889999999998 677789999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 151 Tg 152 (200)
T KOG0092|consen 151 TG 152 (200)
T ss_pred cc
Confidence 97
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=8.6e-30 Score=174.22 Aligned_cols=146 Identities=37% Similarity=0.717 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 97 (170)
+||+++|.+|+|||||++++.. +... .+.||++.....+......+.+||+||++.+...+..+++++|++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999964 2222 34567777666677788999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.......+.+.++++||++|
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g 146 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSG 146 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCC
Confidence 9999999999999888888875544456899999999999876666666666654444456778999999987
No 9
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=1.8e-29 Score=174.99 Aligned_cols=160 Identities=39% Similarity=0.688 Sum_probs=129.7
Q ss_pred hhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (170)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 83 (170)
|+.+++..+..++..+|+++|++|+|||||++++.. +... ...++.+.....+...+..+.+||+||++.+..
T Consensus 2 ~~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 74 (174)
T cd04153 2 LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLL------GEVV-HTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRS 74 (174)
T ss_pred chhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCC-CcCCccccceEEEEECCeEEEEEECCCCHHHHH
Confidence 456677777666789999999999999999999975 2222 234666666667778889999999999999999
Q ss_pred hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEE
Q 030848 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
.+..+++.+|++++|+|++++.++.....++..+.......+.|+++++||+|+.+..+.+++.+.+.........++++
T Consensus 75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~ 154 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQ 154 (174)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence 99999999999999999999988888888888887655446799999999999987667777777665444444567899
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
+|||++|
T Consensus 155 ~~SA~~g 161 (174)
T cd04153 155 GCCALTG 161 (174)
T ss_pred ecccCCC
Confidence 9999986
No 10
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=1.4e-29 Score=175.42 Aligned_cols=154 Identities=42% Similarity=0.715 Sum_probs=125.9
Q ss_pred hhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 10 ~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
........++|+++|++|+|||||++++.+. ....+.+|.+.....+...+..+.+||+||++.+...+..++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~-------~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~ 79 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGE-------DIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYF 79 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccC-------CCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 3444567799999999999999999999762 223445666666666677788999999999999988899999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+.+|++++|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.++........++++++||++
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 99999999999999999988888888886644446799999999999987777777777776444445678999999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 160 g 160 (173)
T cd04154 160 G 160 (173)
T ss_pred C
Confidence 7
No 11
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=174.56 Aligned_cols=144 Identities=25% Similarity=0.379 Sum_probs=126.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|||||+++.++.. +.+...+..|+++.+.. +. .....+++|||+||++++.....|++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d------~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSD------DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhh------ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence 4568999999999999999999987 66677777888887663 33 34567999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.++++++|||+++..+|+++..|+..+-.... ..+|+++|+||+|+.. .++.+..++.+. ..+++|+|+|||
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~-----e~G~~F~EtSAk 157 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGEALAR-----EYGIKFFETSAK 157 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHHHHHH-----HhCCeEEEcccc
Confidence 99999999999999999999998888866544 6899999999999987 788888888888 778899999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 158 ~~ 159 (207)
T KOG0078|consen 158 TN 159 (207)
T ss_pred CC
Confidence 87
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=1.6e-29 Score=176.26 Aligned_cols=143 Identities=23% Similarity=0.357 Sum_probs=115.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
...+||+++|++|+|||||++++.. +.+...+.||++..+. .++.....+.+|||+|++++..++..+++.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~------~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ 76 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 76 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHh------CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCC
Confidence 4678999999999999999999987 4555566667655433 233345679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCccccc
Q 030848 92 AHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLD 156 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~~ 156 (170)
+|++|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+ +.+.++..+.++
T Consensus 77 ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~----- 149 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK----- 149 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH-----
Confidence 9999999999999999997 67777776543 5789999999999853 356677777776
Q ss_pred cce-eEEEeeeccCC
Q 030848 157 ERV-CMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~-~~~~~~Sa~~g 170 (170)
... ++|+||||++|
T Consensus 150 ~~~~~~~~E~SAk~~ 164 (182)
T cd04172 150 QIGAATYIECSALQS 164 (182)
T ss_pred HcCCCEEEECCcCCC
Confidence 445 48999999986
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=4.4e-29 Score=174.92 Aligned_cols=142 Identities=21% Similarity=0.366 Sum_probs=116.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|+.|+|||||+.++.. +.+...+.++.+.... .+.. ....+.+|||+|++.+..++..+++.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ 78 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD------GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRG 78 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 458999999999999999999976 3333444455554432 2333 34779999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++|+|||++++.+|+.+..|+.++.... ++.|+++++||+|+.. ..+.+++.+.++ ...++|++|||++
T Consensus 79 ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~-----~~~~~~~e~SAk~ 151 (189)
T cd04121 79 AQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAE-----RNGMTFFEVSPLC 151 (189)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHH-----HcCCEEEEecCCC
Confidence 999999999999999999999999986543 5899999999999975 556777777776 4567899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 152 g 152 (189)
T cd04121 152 N 152 (189)
T ss_pred C
Confidence 7
No 14
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=9.9e-29 Score=170.53 Aligned_cols=145 Identities=40% Similarity=0.688 Sum_probs=120.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
||+++|.+|||||||++++.+ ... ..+.+|.+.....++..+..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~------~~~-~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQ------DEF-MQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhc------CCC-CCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence 689999999999999999976 222 2356777777777788889999999999999988999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccceeEEEeeeccCC
Q 030848 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDG 170 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g 170 (170)
+|++++.++.+...++..+.......+.|+++++||+|+.+..+.+++.+.+..... ....+.+++|||++|
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 146 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSG 146 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCC
Confidence 999999999999999999986654456899999999999887788888777753332 234568999999987
No 15
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=1e-28 Score=171.28 Aligned_cols=159 Identities=42% Similarity=0.785 Sum_probs=140.7
Q ss_pred hHHHHhhhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848 5 FYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (170)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 83 (170)
++.+++.... ++.++|+++|..||||||+++++.. + ......||.+.+...+...+..+.+||++|+..++.
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~------~-~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKN------G-EISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRP 73 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHS------S-SEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGG
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhh------c-cccccCcccccccceeeeCcEEEEEEeccccccccc
Confidence 3556666665 7899999999999999999999975 2 122377899999999999999999999999999999
Q ss_pred hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc-cceeEE
Q 030848 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD-ERVCMF 162 (170)
Q Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~ 162 (170)
.|..+++++|++|||+|.++.+.+.+....+..++......+.|+++++||.|+++....+++.+.+....+. ...+.+
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v 153 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSV 153 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEE
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEE
Confidence 9999999999999999999999999999999999887666789999999999999999999999999877765 789999
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
++|||++|
T Consensus 154 ~~~sa~~g 161 (175)
T PF00025_consen 154 FSCSAKTG 161 (175)
T ss_dssp EEEBTTTT
T ss_pred EeeeccCC
Confidence 99999987
No 16
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=9.5e-30 Score=167.52 Aligned_cols=143 Identities=24% Similarity=0.406 Sum_probs=126.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|++|+|||||+-++.. +..-+....|+++.++ .++++..++.||||+|+|+++.+.+.|++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRg 83 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVS------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRG 83 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHh------cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhcc
Confidence 458999999999999999999976 4444555555666654 566778899999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc--ccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+.++|+|||++..++|..+..|..++-.+...+++-.++|+||+|.. +..+++|..++++ ...+.|+|||||+
T Consensus 84 aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr-----~h~~LFiE~SAkt 158 (209)
T KOG0080|consen 84 AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFAR-----KHRCLFIECSAKT 158 (209)
T ss_pred CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHH-----hhCcEEEEcchhh
Confidence 99999999999999999999999999888887888899999999998 4789999999998 8888999999986
No 17
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2e-28 Score=171.17 Aligned_cols=162 Identities=35% Similarity=0.520 Sum_probs=130.5
Q ss_pred hhhhHHHHhhhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 2 FSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
|-+++++|.++-. ++.++|+++|.+|+|||||++++.+. .. ..+.+|.+.....+...+..+.+||+||++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~------~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 73 (184)
T smart00178 1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND------RL-AQHQPTQHPTSEELAIGNIKFTTFDLGGHQQ 73 (184)
T ss_pred ChHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC------CC-cccCCccccceEEEEECCEEEEEEECCCCHH
Confidence 3478888884423 77899999999999999999999761 11 1223455555556677788999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-----
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL----- 155 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~----- 155 (170)
+...+..+++.+|++++|+|++++.+++....++..+.......+.|+++++||+|++...+.+++.+.+.....
T Consensus 74 ~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~ 153 (184)
T smart00178 74 ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKG 153 (184)
T ss_pred HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccccc
Confidence 999999999999999999999999989888888888776544467899999999999888888898888874432
Q ss_pred --ccceeEEEeeeccCC
Q 030848 156 --DERVCMFEAVSGYDG 170 (170)
Q Consensus 156 --~~~~~~~~~~Sa~~g 170 (170)
..+...+++|||++|
T Consensus 154 ~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 154 KVGVRPLEVFMCSVVRR 170 (184)
T ss_pred ccCCceeEEEEeecccC
Confidence 125778999999986
No 18
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=1.3e-28 Score=169.35 Aligned_cols=152 Identities=61% Similarity=1.037 Sum_probs=125.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
+|+++|++|+|||||++++........+.....+.++.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999997644333344455667788888877888889999999999999999899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc--cccceeEEEeeeccCC
Q 030848 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK--LDERVCMFEAVSGYDG 170 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~g 170 (170)
+|++++.++.....++..+.......+.|+++++||+|+++....++..+.+.... .....++++++||++|
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 99999888888888888887765556799999999999988777777777665332 2335678999999987
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=4.2e-29 Score=173.70 Aligned_cols=141 Identities=22% Similarity=0.355 Sum_probs=112.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
++||+++|++|+|||||++++.. +.+...+.||++..+. .++.....+.+|||+|++.+......+++.+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~ 74 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAK------DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSD 74 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCC
Confidence 47999999999999999999987 4455556666655432 23334577999999999999888899999999
Q ss_pred EEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCccccccc
Q 030848 94 AVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDER 158 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~~~~ 158 (170)
++|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+ +.+.++..+.++ ..
T Consensus 75 ~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~-----~~ 147 (178)
T cd04131 75 AVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK-----QL 147 (178)
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH-----Hh
Confidence 99999999999999996 67777776543 5789999999999953 255666776666 44
Q ss_pred ee-EEEeeeccCC
Q 030848 159 VC-MFEAVSGYDG 170 (170)
Q Consensus 159 ~~-~~~~~Sa~~g 170 (170)
++ +|+||||++|
T Consensus 148 ~~~~~~E~SA~~~ 160 (178)
T cd04131 148 GAEIYLECSAFTS 160 (178)
T ss_pred CCCEEEECccCcC
Confidence 44 8999999986
No 20
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=2.2e-28 Score=168.50 Aligned_cols=145 Identities=37% Similarity=0.742 Sum_probs=122.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
+|+++|++|||||||++++.+ . ....+.+|.+.....+...+..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~------~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQG------E-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhC------C-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence 479999999999999999975 2 334556777777777888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc---ccceeEEEeeeccCC
Q 030848 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL---DERVCMFEAVSGYDG 170 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g 170 (170)
+|++++.+++++..++..+.......+.|+++++||+|+++..+..++.+.+....+ ....+++++|||++|
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 999999999999999998876654467899999999999988878887777664443 234678999999986
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=8.9e-29 Score=171.26 Aligned_cols=143 Identities=20% Similarity=0.285 Sum_probs=113.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
.+||+++|.+|+|||||++++.. +.....+.++++..+. .+. .....+.+|||||++++..++..+++.+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d 75 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFIS------HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGE 75 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh------CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCC
Confidence 47999999999999999999986 4444455566654333 233 33467999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|||++++.+++.+..|+..+......++.|+++|+||+|+.+ ..+.++..+..+ ...++|++|||++|
T Consensus 76 ~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~~~ 149 (172)
T cd04141 76 GFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR-----EFNCPFFETSAALR 149 (172)
T ss_pred EEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH-----HhCCEEEEEecCCC
Confidence 9999999999999999988877776544446799999999999865 345556655554 45679999999986
No 22
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=2e-28 Score=173.19 Aligned_cols=142 Identities=24% Similarity=0.399 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+.|+++|+.|+|||||++++.. +.+...+.+|++..+. .+... ...+.+|||+|++.+..++..+++.+|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~------~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad 74 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTD------DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 74 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHh------CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCC
Confidence 3689999999999999999976 4555566677765543 34444 477999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+ +....+..+.++. ...+.|++|||++|
T Consensus 75 ~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~----~~~~~~~etSAktg 148 (202)
T cd04120 75 GIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQ----ITGMRFCEASAKDN 148 (202)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCEEEEecCCCC
Confidence 999999999999999999888766543 336799999999999964 4455555555441 12467999999987
No 23
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=6.6e-29 Score=172.24 Aligned_cols=140 Identities=19% Similarity=0.295 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+|++++|++|+|||||+.++.. +.+...+.+|++..+. .++....++.+|||+|++++..++..+++.+++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~ 75 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADV 75 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc------CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcE
Confidence 6899999999999999999986 5555566677765443 223345789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccc------------CCHHHHHhHhCcccccccee-
Q 030848 95 VVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA------------VSADELARYLDLKKLDERVC- 160 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~- 160 (170)
+|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+. .+.++..+..+ ..++
T Consensus 76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~~~ 148 (176)
T cd04133 76 FVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK-----QIGAA 148 (176)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH-----HcCCC
Confidence 9999999999999998 57888775543 57999999999999652 45556666555 3444
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
+|+||||++|
T Consensus 149 ~~~E~SAk~~ 158 (176)
T cd04133 149 AYIECSSKTQ 158 (176)
T ss_pred EEEECCCCcc
Confidence 6999999987
No 24
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.7e-29 Score=167.59 Aligned_cols=145 Identities=26% Similarity=0.375 Sum_probs=126.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
....+|+.++|+.|+|||+|+.++.. ..+.+....|+++.+. .++.+..++++|||+|++.+++....|+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~------krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syY 76 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTD------KRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYY 76 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhc------cCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHh
Confidence 34678999999999999999999976 4555566677777654 4556678899999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+.+.++|+|||+++.++|..+..|+..+.+.. .++..+++++||+||.. .++.+|.+++++ .....|+++||
T Consensus 77 r~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~-----ehgLifmETSa 150 (216)
T KOG0098|consen 77 RGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAR-----EHGLIFMETSA 150 (216)
T ss_pred ccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHH-----HcCceeehhhh
Confidence 99999999999999999999999999998765 37889999999999986 788999999998 56678999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 151 kt~ 153 (216)
T KOG0098|consen 151 KTA 153 (216)
T ss_pred hhh
Confidence 985
No 25
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.5e-29 Score=167.61 Aligned_cols=163 Identities=39% Similarity=0.713 Sum_probs=152.0
Q ss_pred ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
||.+++.++...+.+.+.+|+++|--++||||++.++.. +...+. .||++.+...+.+++.++.+||..|++.
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~------~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKL------GEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeecc------CCcccC-CCccccceeEEEEcceEEEEEecCCCcc
Confidence 899999999999999999999999999999999999965 344444 7999999999999999999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
++..|..|+++++++|+|+|.++.+.+.++++-+..++........|++++.||.|++++.+..++.+.+....+..+.+
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w 153 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW 153 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc
Confidence 99999999999999999999999999999999999998887777899999999999999999999999999888888999
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
.+..|+|.+|
T Consensus 154 ~iq~~~a~~G 163 (181)
T KOG0070|consen 154 HIQSTCAISG 163 (181)
T ss_pred EEeecccccc
Confidence 9999999887
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=1.4e-28 Score=172.95 Aligned_cols=142 Identities=20% Similarity=0.333 Sum_probs=109.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
..+||+++|+.|+|||||+.++.. +.+...+.||++..+. .++.....+.+|||+|++.+..++..+++.+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a 75 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTT------NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQT 75 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHh------CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCC
Confidence 458999999999999999999976 4555566677765443 2334457799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCcccccc
Q 030848 93 HAVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLDE 157 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~ 157 (170)
|++|+|||++++.+|+.+.. |...+.... ++.|+++|+||.|+.+.. ..++..+.++ .
T Consensus 76 ~~~ilvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----~ 148 (191)
T cd01875 76 NVFIICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK-----Q 148 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH-----H
Confidence 99999999999999999974 655554432 579999999999996532 2222333322 2
Q ss_pred ce-eEEEeeeccCC
Q 030848 158 RV-CMFEAVSGYDG 170 (170)
Q Consensus 158 ~~-~~~~~~Sa~~g 170 (170)
.. ++|++|||++|
T Consensus 149 ~~~~~~~e~SAk~g 162 (191)
T cd01875 149 IHAVKYLECSALNQ 162 (191)
T ss_pred cCCcEEEEeCCCCC
Confidence 33 68999999986
No 27
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=2.8e-28 Score=167.68 Aligned_cols=142 Identities=27% Similarity=0.407 Sum_probs=113.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
.+||+++|++|+|||||++++.. +.....+.++++.... .+.. ....+.+||+||++.+...+..+++.+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 75 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGA 75 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 47999999999999999999976 3444455556555443 2233 346789999999999999899999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++|+|||++++.+++.+..|+..+.... .++.|+++++||+|+.+. ...++..+.++ ...+++++|||++|
T Consensus 76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 149 (166)
T cd04122 76 AGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTG 149 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence 99999999999999999999988875543 357899999999999763 45566666655 34568999999987
No 28
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2.5e-28 Score=175.49 Aligned_cols=144 Identities=21% Similarity=0.352 Sum_probs=115.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
+...+||+++|++|+|||||++++.. +.+...+.||++..+. .++.....+.||||+|++.+......+++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~------~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~ 83 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYS 83 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhc------CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcC
Confidence 34678999999999999999999976 4455566667655443 22334577999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCcccc
Q 030848 91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKL 155 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~ 155 (170)
.+|++|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+ ..+.++..+.++
T Consensus 84 ~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~---- 157 (232)
T cd04174 84 DSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK---- 157 (232)
T ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH----
Confidence 99999999999999999875 67877776543 5789999999999863 356667777776
Q ss_pred cccee-EEEeeeccCC
Q 030848 156 DERVC-MFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~~-~~~~~Sa~~g 170 (170)
..++ +|++|||++|
T Consensus 158 -~~~~~~~~EtSAktg 172 (232)
T cd04174 158 -QLGAEVYLECSAFTS 172 (232)
T ss_pred -HcCCCEEEEccCCcC
Confidence 4455 6999999986
No 29
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=8e-28 Score=165.26 Aligned_cols=142 Identities=35% Similarity=0.618 Sum_probs=117.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEE
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 99 (170)
|+++|++|+|||||++++.. +.....+.||.+.....++..+..+.+||+||++.+...+..+++.+|++|+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~------~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 75 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS------ERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc------CCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 78999999999999999986 333455667777766667788899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccceeEEEeeeccC
Q 030848 100 DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYD 169 (170)
Q Consensus 100 d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 169 (170)
|++++.++.....|+..+.... ++.|+++++||+|+.+.....++.+.+....+ ....+++++|||++
T Consensus 76 D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 76 DSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 9999999998888888886543 68999999999999877666666555543333 45678899999987
No 30
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=3.1e-28 Score=166.67 Aligned_cols=142 Identities=26% Similarity=0.422 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEec--CeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+||+++|++|+|||||++++.. +.....+.+|+.... ..+... ...+.+|||||++++...+..+++.+|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 75 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQG 75 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh------CCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCE
Confidence 7999999999999999999976 333344445544222 223333 4568899999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|||++++.+++....|+..+.......+.|+++++||+|+.+ ....++..+..+ ....+++++||++|
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 148 (163)
T cd04136 76 FVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR-----QWGCPFYETSAKSK 148 (163)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH-----HcCCeEEEecCCCC
Confidence 999999999999999999988887655556799999999999965 233333333333 22378999999986
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=3.7e-28 Score=169.05 Aligned_cols=144 Identities=21% Similarity=0.353 Sum_probs=115.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe------------cCeEEEEEEcCCCCcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV------------SNSKLVFWDLGGQPGL 81 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~i~D~~G~~~~ 81 (170)
..+||+++|++|+|||||++++.. +.....+.++++..... +.. ....+.+||+||++.+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 76 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTD------NKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF 76 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH
Confidence 458999999999999999999976 44445556666654432 222 2367999999999999
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccce
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERV 159 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~ 159 (170)
...+..+++.+|++++|||++++.++..+..|+..+......++.|+++|+||+|+.+ ....++..+..+ ...
T Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~ 151 (180)
T cd04127 77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYG 151 (180)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcC
Confidence 9999999999999999999999999999999998887654446789999999999975 345566666665 345
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++++++||++|
T Consensus 152 ~~~~e~Sak~~ 162 (180)
T cd04127 152 IPYFETSAATG 162 (180)
T ss_pred CeEEEEeCCCC
Confidence 68999999986
No 32
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=1.5e-27 Score=167.43 Aligned_cols=162 Identities=38% Similarity=0.591 Sum_probs=127.6
Q ss_pred hhhhHHHHhhhc-cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 2 FSLFYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
+-++++.++... .....+|+++|++|||||||++++.+. .. ..+.++.+.....+...+..+.+||+||++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~------~~-~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~ 75 (190)
T cd00879 3 FDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDD------RL-AQHVPTLHPTSEELTIGNIKFKTFDLGGHEQ 75 (190)
T ss_pred HHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcC------CC-cccCCccCcceEEEEECCEEEEEEECCCCHH
Confidence 334444444433 456799999999999999999999761 11 2344555555566777788999999999998
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-----
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL----- 155 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~----- 155 (170)
+...+..+++.++++++|+|+++..+++....++..+.......+.|+++++||+|+.+....+++.+.+.....
T Consensus 76 ~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (190)
T cd00879 76 ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKG 155 (190)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccc
Confidence 888888999999999999999999889888888888877655567999999999999887888888888764322
Q ss_pred ------ccceeEEEeeeccCC
Q 030848 156 ------DERVCMFEAVSGYDG 170 (170)
Q Consensus 156 ------~~~~~~~~~~Sa~~g 170 (170)
....+++++|||++|
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~ 176 (190)
T cd00879 156 VSLKVSGIRPIEVFMCSVVKR 176 (190)
T ss_pred ccccccCceeEEEEEeEecCC
Confidence 124578999999987
No 33
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=3.1e-28 Score=167.07 Aligned_cols=143 Identities=24% Similarity=0.421 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
++||+++|.+|+|||||++++.. +.....+.+++..... .+.. ....+.+|||||++.+...+..+++.+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQ 74 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCC
Confidence 47999999999999999999975 3333344455543322 2333 3456889999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|||++++.+++....|+..+.......+.|+++++||+|+.+. ...++..+..+ ...++++++||++|
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 148 (164)
T cd04175 75 GFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-----QWGCAFLETSAKAK 148 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH-----HhCCEEEEeeCCCC
Confidence 99999999999999999999999877655578999999999999753 23344444433 33468999999986
No 34
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=8.8e-28 Score=164.24 Aligned_cols=147 Identities=35% Similarity=0.629 Sum_probs=116.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
+|+++|++|+|||||++++.+.. .....+.||.+.....+...+..+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~-----~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPEN-----AQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccC-----CCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 58999999999999999997611 1233455677766656667788999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 99 IDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|++++.++.....++..+..... ..+.|+++++||+|+.+....++..+.++........++++++||++|
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g 149 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTG 149 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCC
Confidence 999999988888888877765432 257999999999999876666666666553322334567999999986
No 35
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=4.1e-28 Score=170.32 Aligned_cols=145 Identities=23% Similarity=0.301 Sum_probs=114.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
...+||+++|++|+|||||++++.. +.....+.+|.+..+. .++.....+.+|||||++++..++..+++.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~ 76 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQ------NHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRT 76 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhc
Confidence 3568999999999999999999986 3333445555554433 234445678899999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
++++++|+|++++.+++....|+..+......++.|+++++||+|+.+. ....+..+... ...++++++||++
T Consensus 77 ~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~ 151 (189)
T PTZ00369 77 GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQ 151 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCC
Confidence 9999999999999999999999988877655568899999999998653 34444444443 3346899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 152 ~ 152 (189)
T PTZ00369 152 R 152 (189)
T ss_pred C
Confidence 6
No 36
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=9e-28 Score=163.91 Aligned_cols=145 Identities=39% Similarity=0.717 Sum_probs=114.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
||+++|++++|||||++++.. +... ...++++.....+++.+..+.+|||||++.+...+..+++.++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL------GEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc------CCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 689999999999999999965 1111 234666666666777889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|++++.++.....++..+.......+.|+++++||+|+.++....++.+.+..........+++++||++|
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKG 145 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCC
Confidence 999998888777777766655444457899999999999876666666665543333344578999999986
No 37
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=2.7e-28 Score=174.46 Aligned_cols=142 Identities=19% Similarity=0.286 Sum_probs=109.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
++||+++|++|+|||||++++.. +.+...+.||+...+. .++.....+.+|||+|++.+...+..+++.+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~------~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d 74 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAK------DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSD 74 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCC
Confidence 37999999999999999999986 4455566666665543 23345577999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccce
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV 159 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 159 (170)
++|+|||++++.+++.+..+|........ ++.|+++|+||+|+.+. .+.++..+..+ ..+
T Consensus 75 ~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak-----~~~ 148 (222)
T cd04173 75 AVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK-----QVG 148 (222)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH-----HcC
Confidence 99999999999999998655544433322 67999999999999652 33344444444 333
Q ss_pred -eEEEeeeccCC
Q 030848 160 -CMFEAVSGYDG 170 (170)
Q Consensus 160 -~~~~~~Sa~~g 170 (170)
++|+||||++|
T Consensus 149 ~~~y~E~SAk~~ 160 (222)
T cd04173 149 AVSYVECSSRSS 160 (222)
T ss_pred CCEEEEcCCCcC
Confidence 48999999974
No 38
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=5.5e-28 Score=171.17 Aligned_cols=143 Identities=25% Similarity=0.405 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
+||+++|++|+|||||++++.. +.....+.+|++..+. .+.. ....+.+|||||++.+...+..+++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~------~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a 74 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH------GIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGA 74 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCC
Confidence 5899999999999999999986 4444556677765433 2333 356799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCcc--ccCCHHHHHhHhCccccccceeEEEeeec
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~ii~v~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+++|+|||++++.+++.+..|+..+.... ...+.|+++|+||+|+. +....+++.+.++... ..+++++||
T Consensus 75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~e~Sa 150 (201)
T cd04107 75 VGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----FIGWFETSA 150 (201)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC----CceEEEEeC
Confidence 99999999999999999998888775432 23578999999999997 4567777777776222 258999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 151 k~~ 153 (201)
T cd04107 151 KEG 153 (201)
T ss_pred CCC
Confidence 986
No 39
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=1.4e-27 Score=162.88 Aligned_cols=145 Identities=43% Similarity=0.755 Sum_probs=123.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
||+++|.+|+|||||++++.+. . .....++.+.....+.+.+..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~------~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLG------E-VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC------C-CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence 6899999999999999999872 1 23456677777777888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|++++.++.....++..+.......+.|+++++||+|+......++..+.+.........++++++||++|
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTG 145 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCC
Confidence 999999999999999888877655568999999999999887777788777765444456789999999986
No 40
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=6.3e-28 Score=164.69 Aligned_cols=143 Identities=21% Similarity=0.304 Sum_probs=111.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
++||+++|++|+|||||++++.+ +.....+.++.+.... .+... ...+.+|||||++++..++..+++.++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~ 74 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 74 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCC
Confidence 36899999999999999999986 3333344455443322 23333 356889999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|+++..+++....|+..+.......+.|+++++||+|+.+ .....+..+... ...++++++||++|
T Consensus 75 ~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 147 (162)
T cd04138 75 GFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTR 147 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCC
Confidence 9999999999999999988888887765556889999999999976 334445555544 34568999999986
No 41
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=9.9e-28 Score=171.43 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 97 (170)
+||+++|.+|+|||||++++.. +.+.. ..+|++..+.........+.+|||+|++.+...+..+++.+|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~------~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME------RRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc------CCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 5899999999999999999976 33332 4567776666566667889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc---------------------cCCHHHHHhHhCccc--
Q 030848 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---------------------AVSADELARYLDLKK-- 154 (170)
Q Consensus 98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~---------------------~~~~~~~~~~~~~~~-- 154 (170)
|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+ ..+.++..+.++...
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~ 152 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKY 152 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcc
Confidence 999999999999999988887643 35789999999999864 334555555554211
Q ss_pred -------cccceeEEEeeeccCC
Q 030848 155 -------LDERVCMFEAVSGYDG 170 (170)
Q Consensus 155 -------~~~~~~~~~~~Sa~~g 170 (170)
.....++|+||||++|
T Consensus 153 ~~~~~~~~~~~~~~~~E~SA~tg 175 (220)
T cd04126 153 KMLDEDLSPAAEKMCFETSAKTG 175 (220)
T ss_pred ccccccccccccceEEEeeCCCC
Confidence 0112368999999987
No 42
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=6.7e-28 Score=165.95 Aligned_cols=140 Identities=17% Similarity=0.384 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.. +.....+.++.+........ ....+.+|||+|++.+...+..+++.+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQ 74 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCC
Confidence 4899999999999999999975 33444556777666554433 3467999999999988888888999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|+|++++.+++.+..|+..+..... +.|+++++||+|+.+.....+..+..+ ...++++++||++|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 144 (166)
T cd00877 75 CAIIMFDVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQITFHR-----KKNLQYYEISAKSN 144 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHHHHH-----HcCCEEEEEeCCCC
Confidence 99999999999999999999888876543 899999999999975443333333333 45678999999987
No 43
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=8.4e-28 Score=165.00 Aligned_cols=142 Identities=23% Similarity=0.451 Sum_probs=113.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EE--EecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.+ +.....+.++.+.... .+ +.....+.+|||||++.+...+..+++.++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCE------GRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQ 74 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCC
Confidence 5899999999999999999987 4444456666665432 23 334578999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCC----CCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDL----QGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
++|+|+|++++.+++....|...+...... .+.|+++++||+|+.+ ....++..+... ...++++++||
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 149 (168)
T cd04119 75 GVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSA 149 (168)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEEC
Confidence 999999999999999999999888766542 5689999999999973 345555555544 34468999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 150 ~~~ 152 (168)
T cd04119 150 CTG 152 (168)
T ss_pred CCC
Confidence 986
No 44
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=8.8e-28 Score=166.70 Aligned_cols=141 Identities=21% Similarity=0.326 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+||+++|++|+|||||++++.. +.+.+.+.||++..+. .+...+ ..+.+|||+|++.+...+..+++.+|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~------~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 75 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT------NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 75 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCE
Confidence 6899999999999999999986 4455566677765443 333333 678999999999999888889999999
Q ss_pred EEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCccccccce
Q 030848 95 VVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLDERV 159 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~ 159 (170)
+|+|||++++.+++.+.. |...+.... ++.|+++|+||+|+.+.. ..++..+..+ ....
T Consensus 76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~----~~~~ 149 (175)
T cd01874 76 FLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR----DLKA 149 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH----HhCC
Confidence 999999999999999875 666664432 578999999999986531 2222222322 1223
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++|++|||++|
T Consensus 150 ~~~~e~SA~tg 160 (175)
T cd01874 150 VKYVECSALTQ 160 (175)
T ss_pred cEEEEecCCCC
Confidence 68999999987
No 45
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=1.2e-27 Score=163.91 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=110.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-E--EEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
.+||+++|++|+|||||++++.+ +.....+.++...... . ++.....+.+|||||++++..++..+++.+|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 75 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQ------SYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGE 75 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCC
Confidence 58999999999999999999976 2223334444443222 2 3333467899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++.+++....|+..+.......+.|+++++||+|+... ...++..+..+ ...++++++||++|
T Consensus 76 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 149 (164)
T cd04145 76 GFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDR 149 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCC
Confidence 99999999999999999999988877655567899999999999763 23444444444 33458999999986
No 46
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.4e-29 Score=166.28 Aligned_cols=170 Identities=56% Similarity=0.923 Sum_probs=152.3
Q ss_pred ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcc-cCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 79 (170)
|++|.+++|.+++++..+.+++.|..++|||||+.+.-.... +..+..+....+|.+.+...+.+.+..+.+||..|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 999999999999999999999999999999999998855433 3334556788899999999999999999999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC-ccccccc
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD-LKKLDER 158 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~-~~~~~~~ 158 (170)
..+++|..|+..+|++|+++|+++++.++.....+..+...-...+.|+++..||.|+.+.....++...+. ......+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 999999999999999999999999999999999998888776667899999999999999988888888887 4555677
Q ss_pred eeEEEeeeccCC
Q 030848 159 VCMFEAVSGYDG 170 (170)
Q Consensus 159 ~~~~~~~Sa~~g 170 (170)
..++.++||.+|
T Consensus 161 d~~~~pvSal~g 172 (197)
T KOG0076|consen 161 DNPFQPVSALTG 172 (197)
T ss_pred cCccccchhhhc
Confidence 889999999876
No 47
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-27 Score=153.62 Aligned_cols=163 Identities=36% Similarity=0.678 Sum_probs=151.3
Q ss_pred ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
||-.++.++++.+..++++|+++|-.++||||++..+.. ..+....||++.++..+++++..+.+||++|++.
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl-------~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~ 73 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKL-------GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 73 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhc-------CCCcccccccceeEEEEEeeeeEEeeeeccCchh
Confidence 788889999999999999999999999999999999964 2334566899999999999999999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
++..|..|+..+.++|+|+|..+....++++.-++++++.....+.++++..||.|++++-.++|+..+++...++.+.+
T Consensus 74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W 153 (180)
T KOG0071|consen 74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW 153 (180)
T ss_pred hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc
Confidence 99999999999999999999999999999999999999988778899999999999999999999999999888999999
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
-+.++||.+|
T Consensus 154 ~vqp~~a~~g 163 (180)
T KOG0071|consen 154 YVQPSCALSG 163 (180)
T ss_pred Eeeccccccc
Confidence 9999999876
No 48
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=2.6e-27 Score=156.36 Aligned_cols=162 Identities=40% Similarity=0.672 Sum_probs=138.5
Q ss_pred ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
|| +.+=+.+.-.+..+++|+++|..||||||+++++.+ ...+...||.+.+.....+++..+++||.+||..
T Consensus 1 mg-~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~-------~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~ 72 (185)
T KOG0073|consen 1 MG-LLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLG-------EDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKT 72 (185)
T ss_pred Cc-HHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcC-------CCccccCCccceeeEEEEecceEEEEEEcCCcch
Confidence 44 333333333345699999999999999999999975 3366788999999999999999999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccce
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERV 159 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~ 159 (170)
+++.|..|+..+|++|+|+|.+++..+++....+..++..-.....|++++.||.|++++.+.+++...+....+ ....
T Consensus 73 lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~ 152 (185)
T KOG0073|consen 73 LRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH 152 (185)
T ss_pred hHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC
Confidence 999999999999999999999999999888888888776444456899999999999999999999988885555 7788
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++++.|||.+|
T Consensus 153 ~~l~~cs~~tg 163 (185)
T KOG0073|consen 153 WRLVKCSAVTG 163 (185)
T ss_pred ceEEEEecccc
Confidence 99999999887
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1e-27 Score=171.84 Aligned_cols=142 Identities=18% Similarity=0.402 Sum_probs=114.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|.+|+|||||++++.. +.....+.+|++.......+ ....+.+|||+|++.+...+..+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 84 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh------CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcc
Confidence 5779999999999999999999876 44555666777766554332 3468999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-CHHHHHhHhCccccccceeEEEeeeccC
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-SADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
.++++|+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.. ..+++ +..+ ...++|++|||++
T Consensus 85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~~-----~~~~~~~e~SAk~ 156 (219)
T PLN03071 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFHR-----KKNLQYYEISAKS 156 (219)
T ss_pred cccEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHHH-----hcCCEEEEcCCCC
Confidence 9999999999999999999999998887653 579999999999996533 33333 3333 3457899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 157 ~ 157 (219)
T PLN03071 157 N 157 (219)
T ss_pred C
Confidence 7
No 50
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=4.6e-29 Score=167.72 Aligned_cols=151 Identities=23% Similarity=0.315 Sum_probs=121.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE----EEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
.+..+||.+.|++|+|||||+|++.. ..+.+.+..|++..+.. ++..-.-++||||+|++++.++.-.++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~------~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFY 79 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVN------KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFY 79 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHH------HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccccee
Confidence 45679999999999999999999976 55666677777766542 333345699999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC---CCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL---QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
+.+|.+++|||++++.+|+.+..|..+++.+... ...|+|+++||+|+.+..++..-.+.++.-+....++||+|+|
T Consensus 80 RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtS 159 (210)
T KOG0394|consen 80 RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETS 159 (210)
T ss_pred cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEec
Confidence 9999999999999999999999999999887653 3479999999999977443333333333333355689999999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
||.+
T Consensus 160 AK~~ 163 (210)
T KOG0394|consen 160 AKEA 163 (210)
T ss_pred cccc
Confidence 9964
No 51
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=1.8e-27 Score=163.20 Aligned_cols=142 Identities=24% Similarity=0.366 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EE--EEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GR--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+||+++|++|+|||||++++.+ +.....+.++..... .. ++.....+.+|||||++++...+..+++.+|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~ 74 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQ------GHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEG 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCE
Confidence 4899999999999999999976 222223333333221 12 22334678999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+|++++.+++....|+..+.......+.|+++++||+|+.+ ....++..+..+ ...++++++||++|
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 147 (164)
T smart00173 75 FLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-----QWGCPFLETSAKER 147 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-----HcCCEEEEeecCCC
Confidence 999999999999999999988887665556789999999999975 234445555554 33468999999986
No 52
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=1.6e-27 Score=163.35 Aligned_cols=143 Identities=26% Similarity=0.378 Sum_probs=109.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EEEEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
++||+++|.+|+|||||++++.. +...+.+.++.... ...+. .....+.+|||||++.+...+..+++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVS------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCC
Confidence 47999999999999999999976 34434444444321 12233 33456889999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++.++++...|+..+.......+.|+++++||+|+.+ .....+...... ...++++++||++|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 148 (163)
T cd04176 75 GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE-----EWGCPFMETSAKSK 148 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH-----HhCCEEEEecCCCC
Confidence 9999999999999999999988887765456899999999999865 223333333332 23468999999986
No 53
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=2e-27 Score=163.66 Aligned_cols=143 Identities=25% Similarity=0.412 Sum_probs=113.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|++|+|||||++++.+ +.....+.++.+.... .+... ...+.+||+||++.+...+..+++.
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 75 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSE------DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRG 75 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhh------CcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCC
Confidence 358999999999999999999986 4444455566655432 23333 3578999999999998888899999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++++|+|++++.+++.+..|+..+.... ..+.|+++++||+|+.+ ....++..+.+. ...++++++||++
T Consensus 76 ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 149 (167)
T cd01867 76 AMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKA 149 (167)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence 999999999999999999999888886643 36789999999999975 345555555555 3456899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 150 ~ 150 (167)
T cd01867 150 N 150 (167)
T ss_pred C
Confidence 6
No 54
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=2.7e-27 Score=162.12 Aligned_cols=141 Identities=23% Similarity=0.387 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
++|+++|++|+|||||++++.. +...+.+.++.+.... .+... ...+.+||++|++.+...+..+++.+|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 74 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTD------NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQ 74 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCc
Confidence 4899999999999999999976 4445555667665443 33433 367899999999999888889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|||++++++++.+..|+..+.... ..+.|+++++||.|+.. ....++.....+ ...++|++|||++|
T Consensus 75 ~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~ 147 (161)
T cd04117 75 GIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAK-----EYGMDFFETSACTN 147 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence 9999999999999999999988886543 35789999999999965 344556666555 34468999999986
No 55
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=2.5e-27 Score=162.84 Aligned_cols=141 Identities=25% Similarity=0.383 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.+ +.....+.++.+..+. .+. .....+.+||+||++.+...+..+++.+|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~ 75 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAM 75 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCc
Confidence 6999999999999999999986 4444455566654432 222 23467999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++++++.+..|+..+.... ....|+++++||+|+.+. ...++..+..+ ...++++++||++|
T Consensus 76 ~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 148 (165)
T cd01865 76 GFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKEN 148 (165)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence 9999999999999999999988875433 357899999999999753 34455554444 33457999999986
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=2e-27 Score=164.19 Aligned_cols=141 Identities=24% Similarity=0.417 Sum_probs=110.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
||+++|++|+|||||++++.. +.+...+.+|++..... +. .....+.+|||||++.+...+..+++.+|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK------DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQA 75 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCE
Confidence 799999999999999999987 55556667777665532 22 234679999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+|++++++++....|+..+.......+.|+++|+||+|+.+... .++..+..+ ....+++++||++|
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~g 150 (170)
T cd04108 76 IIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-----EMQAEYWSVSALSG 150 (170)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH-----HcCCeEEEEECCCC
Confidence 999999999999999999998887654445678999999999865322 222333333 23457999999986
No 57
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=4.8e-27 Score=161.46 Aligned_cols=142 Identities=29% Similarity=0.470 Sum_probs=111.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
.+||+++|++|+|||||++++.. +.....+.++.+.... .+... ...+.+||+||++.+...+..+++.+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 75 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 75 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcC
Confidence 47999999999999999999976 3333344455554332 33333 45789999999999998899999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++|+|+|+++++++..+..|+..+.... .++.|+++++||+|+.+. ...++..+..+ ...++++++||++|
T Consensus 76 ~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 149 (166)
T cd01869 76 HGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNA 149 (166)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCC
Confidence 99999999999999999999988886543 357899999999998653 44455555555 34568999999986
No 58
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.8e-28 Score=159.45 Aligned_cols=140 Identities=26% Similarity=0.454 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
++++++|++|+|||+|+.++.. +++..++..|++..+. .+++..+++.|||++|+|.++.+.+.|++..|
T Consensus 9 fkllIigDsgVGKssLl~rF~d------dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFAD------DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhh------cccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 5679999999999999999987 6777788788887765 24456688999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|||+++.++|.+...|++++.+.+ +..|-++|+||.|.++ ....++++..+. .+++.++|+|||.+
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~-----~mgie~FETSaKe~ 154 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFAL-----QMGIELFETSAKEN 154 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHH-----hcCchheehhhhhc
Confidence 9999999999999999999999998876 4888999999999987 456677777777 78889999999853
No 59
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=2.9e-27 Score=162.52 Aligned_cols=142 Identities=20% Similarity=0.319 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+||+++|++|+|||||++++.+ +.....+.++.+.... ..+.....+.+|||||++++...+..+++.+++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 75 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK------GTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHA 75 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCE
Confidence 7899999999999999999986 3333444455443332 223345679999999999999888888999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|||++++.+++.+..|+..+..... .++.|+++|+||+|+.+ ....++...... ...+++++|||++|
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SA~~g 150 (165)
T cd04140 76 FILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT-----EWNCAFMETSAKTN 150 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH-----HhCCcEEEeecCCC
Confidence 9999999999999999888877654322 25789999999999975 333444444443 34568999999987
No 60
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.95 E-value=2.7e-27 Score=163.47 Aligned_cols=142 Identities=29% Similarity=0.480 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcch-hhHHHHhhc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLR-SIWEKYYEE 91 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~-~~~~~~~~~ 91 (170)
.+||+++|++|+|||||++++.. +.......++.+.... .+. .....+.+||+||++.+. ..+..++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 75 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA------GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRN 75 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh------CCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcC
Confidence 47999999999999999999976 3444445555554432 233 334789999999998886 467888899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++++|||++++.+++.+..|...+.......+.|+++++||+|+.+. ...++..+..+ ...++|++|||++
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 150 (170)
T cd04115 76 VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD-----AHSMPLFETSAKD 150 (170)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH-----HcCCcEEEEeccC
Confidence 9999999999999999999999888876655567999999999999753 34445555554 3457899999997
No 61
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=8.1e-27 Score=162.94 Aligned_cols=147 Identities=40% Similarity=0.688 Sum_probs=113.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-----cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-----SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
.+||+++|.+|||||||++++.. +..... .+|.+........ .+..+.+|||||++.+...+..+++.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~------~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 75 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKF------NEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRC 75 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc------CCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhcc
Confidence 58999999999999999999975 222222 3555444433332 45789999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccceeEEEeeeccCC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDG 170 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g 170 (170)
+|++++|+|++++.+++....++..+.......+.|+++++||+|+.+....++..+.+..... ....++++++||++|
T Consensus 76 ~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 155 (183)
T cd04152 76 TDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIG 155 (183)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence 9999999999999888888888887776554467899999999999876666666665542222 223467999999986
No 62
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=4.5e-27 Score=168.14 Aligned_cols=142 Identities=28% Similarity=0.382 Sum_probs=113.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
+||+++|++|+|||||++++.. +.....+.+|++.... .+.. ....+.+|||||++.+...+..+++.+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~------~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~a 74 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK------EGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGA 74 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcC
Confidence 5899999999999999999976 4445566677775543 2333 246799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
|++|+|||++++.+++.+..|...+..... ..+.|+++|+||+|+.+ ....++..+..+ ...++++++||+
T Consensus 75 d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~~~~~~iSAk 149 (215)
T cd04109 75 HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANGMESCLVSAK 149 (215)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECC
Confidence 999999999999999999998888876543 24578999999999964 445555555555 334679999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 150 tg 151 (215)
T cd04109 150 TG 151 (215)
T ss_pred CC
Confidence 87
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=2.5e-27 Score=164.28 Aligned_cols=142 Identities=19% Similarity=0.318 Sum_probs=105.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
.+||+++|++|+|||||+.++.. +.+...+.++...... .++.....+.+|||+|++.+...+..+++.+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 74 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhc------CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCC
Confidence 37999999999999999999976 4444555555543322 23334467899999999999998999999999
Q ss_pred EEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccc
Q 030848 94 AVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDER 158 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~ 158 (170)
++|+|||++++++++.+.. |+..+.... ++.|+++|+||+|+.+. .+.++..+..+ +..
T Consensus 75 ~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~ 148 (174)
T cd01871 75 VFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK----EIG 148 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH----HcC
Confidence 9999999999999999864 655554432 57999999999999642 22333333333 112
Q ss_pred eeEEEeeeccCC
Q 030848 159 VCMFEAVSGYDG 170 (170)
Q Consensus 159 ~~~~~~~Sa~~g 170 (170)
.++|++|||++|
T Consensus 149 ~~~~~e~Sa~~~ 160 (174)
T cd01871 149 AVKYLECSALTQ 160 (174)
T ss_pred CcEEEEeccccc
Confidence 358999999987
No 64
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=9.1e-27 Score=159.03 Aligned_cols=145 Identities=40% Similarity=0.761 Sum_probs=113.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 97 (170)
+|+++|++|+|||||++++.. +... ...+|.+.....+.. ....+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~------~~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~ 73 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH------AELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY 73 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc------CCcc-cccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 589999999999999999976 2222 223555555444443 34689999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc-cccceeEEEeeeccCC
Q 030848 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK-LDERVCMFEAVSGYDG 170 (170)
Q Consensus 98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~g 170 (170)
|+|++++.++.....++..++......+.|+++++||+|++.....+++...+.... .....+++++|||++|
T Consensus 74 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (160)
T cd04156 74 VVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTG 147 (160)
T ss_pred EEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccC
Confidence 999999988888888888887654446799999999999987666777766654222 2235678999999986
No 65
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=4.8e-27 Score=167.47 Aligned_cols=143 Identities=27% Similarity=0.450 Sum_probs=113.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
++||+++|++|+|||||++++.. +.......++++.... .+.. ....+.+|||||++.+...+..+++.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~------~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 75 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTE------GRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRN 75 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcC
Confidence 58999999999999999999986 3333344456655433 2322 24679999999999999888999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++++|||++++.+++++..|+..+.........|+++++||+|+.+ ....++..+..+ ...++++++||++
T Consensus 76 ~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~ 150 (211)
T cd04111 76 SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK-----DLGMKYIETSART 150 (211)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH-----HhCCEEEEEeCCC
Confidence 999999999999999999999999887665445678999999999976 344555555554 3447899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 151 g 151 (211)
T cd04111 151 G 151 (211)
T ss_pred C
Confidence 6
No 66
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=6.2e-27 Score=160.09 Aligned_cols=140 Identities=23% Similarity=0.399 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe----cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV----SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
+||+++|++|+|||||++++.. +.....+.++++..+.. +.. ....+.+|||||++.+...+..+++.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 74 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK------GIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRG 74 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcC
Confidence 5899999999999999999976 33344455666555422 222 34679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++++|+|++++++++.+..|...+.... .+.|+++++||+|+.. ....++..+..+ ...++++++||++
T Consensus 75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~ 147 (162)
T cd04106 75 AQACILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAK-----RLQLPLFRTSVKD 147 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCC
Confidence 999999999999999999988888775433 5789999999999965 344556655555 3446899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 148 ~ 148 (162)
T cd04106 148 D 148 (162)
T ss_pred C
Confidence 6
No 67
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=9.1e-27 Score=159.33 Aligned_cols=140 Identities=28% Similarity=0.551 Sum_probs=117.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
||+++|++|+|||||++++.+ +...+.+.++.+..... +.. ....+.+||++|++.+......+++.+|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 74 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN------GEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDA 74 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH------SSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESE
T ss_pred CEEEECCCCCCHHHHHHHHHh------hcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999987 45556677777555443 333 45679999999999999988899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|+|||++++.+++.+..|+..+..... ...|+++++||.|+.+ +.+.++..+.++ ....+|+++||++|
T Consensus 75 ~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~ 146 (162)
T PF00071_consen 75 IIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVPYFEVSAKNG 146 (162)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSEEEEEBTTTT
T ss_pred cccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCEEEEEECCCC
Confidence 9999999999999999999998876654 5689999999999986 667777777777 44589999999976
No 68
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=2e-26 Score=156.38 Aligned_cols=145 Identities=39% Similarity=0.722 Sum_probs=118.5
Q ss_pred EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEE
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 99 (170)
|+++|++|+|||||++++.+ ........++.+.....+...+..+.+||+||++.+...+..+++.+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG------GQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc------CCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 78999999999999999977 334445567777776667777788999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 100 DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 100 d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++++.++.....++..+.......+.|+++++||+|+.+.....+..+.+.........++++++||++|
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEK 146 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccC
Confidence 99998888888888888776544467899999999999877666666666553333445678999999986
No 69
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=4.3e-27 Score=165.26 Aligned_cols=141 Identities=24% Similarity=0.304 Sum_probs=107.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
||+++|.+|+|||||++++.. +.....+.++++.... .+.. ....+.+|||||++++...+..+++.+|++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL------NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGF 74 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEE
Confidence 589999999999999999976 3333344455543322 2233 335689999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|+|||++++.+++.+..|+..+..... ..+.|+++++||+|+.+ .....+..+..+ ...++++++||++|
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAk~~ 148 (190)
T cd04144 75 ILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR-----RLGCEFIEASAKTN 148 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEecCCCC
Confidence 999999999999999999888765432 25789999999999964 334444444443 34468999999986
No 70
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=8e-27 Score=162.79 Aligned_cols=140 Identities=21% Similarity=0.338 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|+.|+|||||++++.. +.+.+.+.+|++..+. .+... ...+.+||++|++.+...+..+++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~------~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~ 74 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE------GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAV 74 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCC
Confidence 5899999999999999999987 4555567788876653 34443 467999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-------HHHHHhHhCccccccceeEEEeee
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-------ADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
++++|||++++.+++++..|+..+..... ...| ++|+||+|+.+... .++..+..+ ..++++++||
T Consensus 75 ~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~e~S 147 (182)
T cd04128 75 AILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAK-----AMKAPLIFCS 147 (182)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHHHHHHH-----HcCCEEEEEe
Confidence 99999999999999999999988866432 4566 67899999964211 122223332 3347899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 148 Ak~g 151 (182)
T cd04128 148 TSHS 151 (182)
T ss_pred CCCC
Confidence 9987
No 71
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=1.1e-26 Score=164.29 Aligned_cols=142 Identities=25% Similarity=0.437 Sum_probs=112.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|++|+|||||++++.. ......+.+|.+.... .+.. ....+.+||+||++.+...+..+++.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ 78 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRG 78 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCC
Confidence 468999999999999999999976 3344455566665433 3333 33578999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
++++++|+|++++.+++.+..|+..+.... +..|+++++||+|+.+. ...++..+..+ ...++++++||++
T Consensus 79 a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 151 (199)
T cd04110 79 THGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGISLFETSAKE 151 (199)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCC
Confidence 999999999999999999999998876543 57899999999999763 34455555554 3346899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 152 ~ 152 (199)
T cd04110 152 N 152 (199)
T ss_pred C
Confidence 6
No 72
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=9.8e-27 Score=160.48 Aligned_cols=146 Identities=20% Similarity=0.376 Sum_probs=113.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--E--EEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--R--IEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.. +...+...++.+.... . ++.....+.+||+||++.+...+..+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 76 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYR 76 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHc------CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhc
Confidence 3568999999999999999999976 3434444455554432 2 3334567899999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeee
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.+|++++|||++++.+++.+..|...+..... ..+.|+++++||+|+.. ....++..+.++.. ...+++++|
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~S 152 (170)
T cd04116 77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GDYPYFETS 152 (170)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CCCeEEEEE
Confidence 99999999999999999999988888765432 24689999999999965 45666676666521 234799999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 153 a~~~ 156 (170)
T cd04116 153 AKDA 156 (170)
T ss_pred CCCC
Confidence 9986
No 73
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.95 E-value=4e-26 Score=157.77 Aligned_cols=152 Identities=40% Similarity=0.685 Sum_probs=123.4
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
....+.++|+++|++|+|||||++++.+. . .....++.+.+...+...+..+.+||+||+..+...+..+++.
T Consensus 9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~------~-~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 81 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASE------D-ISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFEN 81 (173)
T ss_pred hccCCccEEEEEccCCCCHHHHHHHHhcC------C-CcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcC
Confidence 34456899999999999999999999762 1 1234456666666677778899999999999888888888999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|++++|+|+++..++.....++..+.......+.|+++++||+|+.+....+++.+.+.........++++++||++|
T Consensus 82 ~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 82 TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCC
Confidence 9999999999998888888888877766544457999999999999887777778777775555556678899999987
No 74
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=2.1e-26 Score=158.15 Aligned_cols=144 Identities=26% Similarity=0.443 Sum_probs=109.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|++|+|||||++++.. +.......++.+.. ...+...+ ..+.+||+||++.+...+..+++.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 75 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS------GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRS 75 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh------CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc
Confidence 458999999999999999999976 33334444444433 23344444 578999999999998888999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ....+..+..+. ....+++++||++
T Consensus 76 ~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~ 150 (165)
T cd01864 76 ANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGMLAVLETSAKE 150 (165)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCcEEEEEECCC
Confidence 999999999999999999999988886542 367899999999999753 344445554441 1224689999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 151 ~ 151 (165)
T cd01864 151 S 151 (165)
T ss_pred C
Confidence 7
No 75
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=8.3e-27 Score=159.71 Aligned_cols=139 Identities=24% Similarity=0.398 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.. +...+...++.+.... .++.....+.+|||||++.+...+..+++.+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 74 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM------DGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAH 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCC
Confidence 5899999999999999999976 3333333344443322 22334567899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|+|++++.+++....|+..+.... ++.|+++++||+|+.+.. ..+..+..+ ...++++++||++|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~~~~~~-----~~~~~~~~~Sa~~~ 143 (161)
T cd04124 75 ACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKKFNFAE-----KHNLPLYYVSAADG 143 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHHHHHHH-----HcCCeEEEEeCCCC
Confidence 9999999999999999888888886542 478999999999985432 222222222 23468999999986
No 76
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=1.2e-26 Score=158.64 Aligned_cols=141 Identities=28% Similarity=0.437 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.+ +.......++.+.... .+. .....+.+||+||++.+...+..+++.+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~ 74 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE------NKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAA 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCC
Confidence 5899999999999999999986 3333444444443332 222 33467899999999999888899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++++++.+..|+..+.... .++.|+++++||+|+.+ ....++.....+ ...++++++||++|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 147 (161)
T cd04113 75 GALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTG 147 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence 9999999999999999999888775443 36789999999999975 345556666665 33478999999986
No 77
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.95 E-value=3.8e-27 Score=153.05 Aligned_cols=160 Identities=35% Similarity=0.648 Sum_probs=144.7
Q ss_pred hhHHHHhhhcc---CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 4 LFYGLWKYIFT---KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 4 ~~~~~~~~~~~---~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
++.+.+.++.+ +.++.+.++|-.+||||||+|.+.. +.+.+...||.+.+.+.++-.+..+.+||.||++.
T Consensus 4 ~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~------g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~r 77 (186)
T KOG0075|consen 4 KLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIAR------GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 77 (186)
T ss_pred HHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEee------ccchhhhcccccceeEEeccCceEEEEEecCCCcc
Confidence 44444444443 5889999999999999999999976 66777788999999999999999999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
++.+|+.|.+.+++++||+|+.+++.++..+.-++.++......+.|+++++||.|++++.+..++.+++...-+..+.+
T Consensus 78 frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREv 157 (186)
T KOG0075|consen 78 FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREV 157 (186)
T ss_pred HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceE
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999888888999
Q ss_pred EEEeeeccC
Q 030848 161 MFEAVSGYD 169 (170)
Q Consensus 161 ~~~~~Sa~~ 169 (170)
-++.+|++.
T Consensus 158 cC~siScke 166 (186)
T KOG0075|consen 158 CCFSISCKE 166 (186)
T ss_pred EEEEEEEcC
Confidence 999999985
No 78
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=1.5e-26 Score=158.75 Aligned_cols=142 Identities=25% Similarity=0.436 Sum_probs=110.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
.+||+++|++|+|||||++++.+ +.......++.+.... .+...+ ..+.+||+||++.+...+..+++.+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 76 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTR------NEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGA 76 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCC
Confidence 47999999999999999999976 2333333455554332 333333 5789999999999988889999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+|+|++++.+++.+..|+..+..... .+.|+++++||+|+.. ....++...... ...++++++||++|
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 150 (165)
T cd01868 77 VGALLVYDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDG 150 (165)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence 999999999999999999999888866542 4689999999999975 334555555554 34578999999986
No 79
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=2.1e-26 Score=158.65 Aligned_cols=142 Identities=26% Similarity=0.377 Sum_probs=110.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEE--EecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
.+||+++|.+|+|||||++++.. +.......++.+... ..+ ......+.+||+||++++......+++.+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 77 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGA 77 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC
Confidence 48999999999999999999976 333333334444332 222 33346799999999999988888899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++++|+|++++.+++.+..|+..+..... ++.|+++++||.|+.+ ....++....++ ...++++++||++|
T Consensus 78 d~il~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 151 (168)
T cd01866 78 AGALLVYDITRRETFNHLTSWLEDARQHSN-SNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTA 151 (168)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence 999999999999999999999988866532 6799999999999974 345556666555 44568999999876
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=2.2e-26 Score=157.55 Aligned_cols=142 Identities=27% Similarity=0.458 Sum_probs=110.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--E--EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--G--RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
++||+++|++|+|||||++++.+ +.......++.+... . .++.....+.+||+||++++...+..+++.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 74 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVK------NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGA 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccC
Confidence 47999999999999999999987 333333344444322 1 2333456799999999999988888899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++++|+|++++++++....|+..+..... ++.|+++++||+|+.+ ....++..+... ...++++++||++|
T Consensus 75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 148 (163)
T cd01860 75 AAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTG 148 (163)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence 999999999999999999999888876543 6789999999999874 345555555555 33468999999986
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=2.3e-26 Score=157.12 Aligned_cols=138 Identities=17% Similarity=0.319 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC--eEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
+||+++|+.|+|||||+.++.. +.+.+...++.+.....+...+ ..+.+||++|++. ..+++.+|++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ 69 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT------GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAV 69 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh------CCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEE
Confidence 4899999999999999999875 2222223333332223344444 6699999999975 2456889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|||++++.+|+.+..|+..+......++.|+++++||.|+.. ..+.++..+..+ ....++|++|||++|
T Consensus 70 ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~ 144 (158)
T cd04103 70 IFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA----DMKRCSYYETCATYG 144 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH----HhCCCcEEEEecCCC
Confidence 99999999999999999999887765556789999999999852 344444444443 123478999999986
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=2e-26 Score=158.81 Aligned_cols=144 Identities=20% Similarity=0.319 Sum_probs=110.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
++||+++|.+|+|||||++++.+ +.....+.++...... .+. .....+.+|||||++.+..++..+++.++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 74 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQ------NVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQ 74 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCC
Confidence 47899999999999999999976 3333444455543322 223 33467899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++.+++....|...+.......+.|+++++||.|+.+. ...++..+..+. ...++++++||++|
T Consensus 75 ~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~SA~~~ 149 (168)
T cd04177 75 GFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ----WGNVPFYETSARKR 149 (168)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH----cCCceEEEeeCCCC
Confidence 99999999999999999988888876544467999999999999753 334444443331 12368999999986
No 83
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=3.1e-26 Score=156.52 Aligned_cols=142 Identities=23% Similarity=0.406 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.+ ........++.+.... .+.. ....+.+||+||++.+...+..+++.+|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 74 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTD------DTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQ 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCC
Confidence 5899999999999999999976 2222223344444322 2222 3467999999999999888888999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++.+++....|+..+.......+.|+++++||+|+.. ....++..+..+ ...++++++||++|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 147 (161)
T cd01863 75 GVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTR 147 (161)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCC
Confidence 9999999999999999988888887766667899999999999974 445556555555 34678999999986
No 84
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.8e-26 Score=160.81 Aligned_cols=141 Identities=27% Similarity=0.406 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.. +.....+.++.+.... .+. .....+.+||+||++.+...+..+++.+|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 74 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE------DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAH 74 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCC
Confidence 5899999999999999999976 3444445566654432 222 23467899999999999989999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|||+++++++..+..|+..+..... ...|+++++||+|+.+ ....++..+..+ ...++++++||++|
T Consensus 75 ~iilv~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~~ 147 (188)
T cd04125 75 GYLLVYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDSNIAKSFCD-----SLNIPFFETSAKQS 147 (188)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence 99999999999999999998888865432 4589999999999975 234444444444 33458999999986
No 85
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=3.3e-26 Score=160.22 Aligned_cols=140 Identities=21% Similarity=0.315 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE---ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE---VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.. +.....+.++....+. .+. .....+.+|||||++++...+..+++.+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQ------GKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVD 74 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHh------CcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCC
Confidence 5899999999999999999986 3344445555544432 222 23457999999999999998988999999
Q ss_pred EEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccc------CCHHHHHhHhCcccccccee-EEEee
Q 030848 94 AVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA------VSADELARYLDLKKLDERVC-MFEAV 165 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~ 165 (170)
++|+|+|++++.+++.+.. |+..+... .++.|+++++||+|+... ...++..+... ...+ +++++
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~ 147 (187)
T cd04132 75 VLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-----KQGAFAYLEC 147 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-----HcCCcEEEEc
Confidence 9999999999999998865 55555433 257899999999999653 24555555554 2333 79999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 148 Sa~~~ 152 (187)
T cd04132 148 SAKTM 152 (187)
T ss_pred cCCCC
Confidence 99986
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=4.9e-26 Score=156.00 Aligned_cols=142 Identities=20% Similarity=0.337 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE---ecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE---VSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
+||+++|++|||||||++++... .......+.++++..... +. .....+.+|||||++.+..++..+++++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 76 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSN----GAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESP 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC----CCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCC
Confidence 58999999999999999999751 113344555666555432 21 2447899999999998888889999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++++|+|++++.+++.+..|+..+.... .+.|+++++||+|+.+.. ...+...... ...++++++||++|
T Consensus 77 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 149 (164)
T cd04101 77 SVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ-----ANQLKFFKTSALRG 149 (164)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence 99999999999999998888888876543 568999999999996532 3333333332 33467999999986
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=5.6e-26 Score=155.23 Aligned_cols=141 Identities=23% Similarity=0.424 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
.||+++|++|||||||++++.+ ........++.+.... .+...+ ..+.+||+||++.+...+..+++.+|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~ 74 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMY------DTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSS 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCC
Confidence 4899999999999999999976 3333344444444332 333333 56999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++++++....|+..+..... .+.|+++++||+|+.+ ....++...... ...++++++||++|
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 147 (161)
T cd01861 75 VAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAG 147 (161)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCC
Confidence 99999999999999999999888866533 3689999999999954 234555555554 34478999999986
No 88
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=4.2e-26 Score=165.84 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=111.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EEEEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+||+++|++|+|||||++++.. +.+...+.+|++.. ...+.. +...+.||||+|++.+..++..++..+|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~------~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~ 74 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLG------GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDV 74 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 4899999999999999999976 33344455555422 223333 34678999999999988888888899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCC--------CCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEe
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNE--------DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
+|+|||++++.+|+++..|+..+.... ...+.|+++++||+|+.. +...+++.+.+.. ...+++++
T Consensus 75 iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~e 150 (247)
T cd04143 75 FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFE 150 (247)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEE
Confidence 999999999999999999988886532 225789999999999974 5566777766651 23568999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 151 vSAktg 156 (247)
T cd04143 151 VSAKKN 156 (247)
T ss_pred EeCCCC
Confidence 999986
No 89
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1.7e-26 Score=162.15 Aligned_cols=141 Identities=23% Similarity=0.319 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-E--EEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
.||+++|++|+|||||++++.. +.....+.+|....+. . .+.....+.+|||+|++.+...+..+++.+|+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~ 74 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR------GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDV 74 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCE
Confidence 3799999999999999999976 4444455566554433 2 23344679999999999998888888999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccCCH--------------HHHHhHhCccccccce
Q 030848 95 VVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVSA--------------DELARYLDLKKLDERV 159 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~--------------~~~~~~~~~~~~~~~~ 159 (170)
+++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.... ++..+.+. ....
T Consensus 75 ~ilv~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~ 148 (189)
T cd04134 75 IMLCFSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK----RINA 148 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH----HcCC
Confidence 99999999999998886 4666665432 57899999999999764322 22222222 1233
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++|++|||++|
T Consensus 149 ~~~~e~SAk~~ 159 (189)
T cd04134 149 LRYLECSAKLN 159 (189)
T ss_pred CEEEEccCCcC
Confidence 68999999986
No 90
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.7e-27 Score=160.05 Aligned_cols=143 Identities=23% Similarity=0.405 Sum_probs=123.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE----EEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|++|+|||-|+.|+.. +.+.....+|+++.+.. ++.+..+.+||||+||++++...+.|++.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftr------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTR------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcc------cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 457899999999999999999976 55555666788887664 45566889999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+.++++|||++...+|+.+..|+.++..... +++++++|+||+||.. ..+-++...... .+..+|+++||..
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae-----~~~l~f~EtSAl~ 160 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAE-----KEGLFFLETSALD 160 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHH-----hcCceEEEecccc
Confidence 9999999999999999999999999988765 7899999999999986 667777777777 6777899999975
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
+
T Consensus 161 ~ 161 (222)
T KOG0087|consen 161 A 161 (222)
T ss_pred c
Confidence 3
No 91
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=4e-26 Score=160.44 Aligned_cols=141 Identities=28% Similarity=0.486 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCC-CcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
+||+++|++|+|||||++++.. +... ..+.++++.... .+. .....+.+|||||++.+...+..+++.+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 74 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKD------GAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDA 74 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCC
Confidence 5899999999999999999976 2221 233445444332 233 3346799999999999988888899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++|+|+|++++++++++..|+..+.... ..+.|+++++||+|+.. ....++..+... ...++|+++||++|
T Consensus 75 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~Sa~~~ 148 (191)
T cd04112 75 HALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAK-----EYGVPFMETSAKTG 148 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence 99999999999999999999888876643 35789999999999964 344455555544 33468999999986
No 92
>PLN03110 Rab GTPase; Provisional
Probab=99.94 E-value=4.9e-26 Score=162.87 Aligned_cols=143 Identities=20% Similarity=0.341 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|++|+|||||++++.+ +.....+.++++.... .+.. ....+.+||++|++++...+..+++.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~------~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 84 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTR------NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence 458999999999999999999976 3333445566665543 2333 34689999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
++++|+|||++++.+++.+..|+..+.... ..+.|+++++||+|+.+. ...++...... ...++++++||++
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~SA~~ 158 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE-----KEGLSFLETSALE 158 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence 999999999999999999999988876543 257899999999998652 33444444443 3467899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 159 g 159 (216)
T PLN03110 159 A 159 (216)
T ss_pred C
Confidence 6
No 93
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=3.4e-26 Score=161.52 Aligned_cols=135 Identities=17% Similarity=0.350 Sum_probs=107.1
Q ss_pred EcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 23 LGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 23 vG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
+|..|+|||||++++.. +.....+.+|++....... .....+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 vG~~~vGKTsLi~r~~~------~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV 74 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 74 (200)
T ss_pred CCCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEE
Confidence 69999999999999975 4444556677776654332 2457899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
||+++..+++.+..|+..+.... ++.|+++|+||+|+.......+..+..+ ...++|++|||++|
T Consensus 75 ~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~~~~-----~~~~~~~e~SAk~~ 139 (200)
T smart00176 75 FDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSITFHR-----KKNLQYYDISAKSN 139 (200)
T ss_pred EECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHHHHH-----HcCCEEEEEeCCCC
Confidence 99999999999999988887653 5799999999999865322222223333 45678999999986
No 94
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=3.5e-26 Score=161.05 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=104.4
Q ss_pred eeEEEEEcCCCCChHHHHH-HHHhhcccCCCCCCCcccCCcce-e-EE-----------EEEecCeEEEEEEcCCCCcch
Q 030848 17 EFHVLILGIDKAGKTTLLE-KLKSVYSNVEGLPPDRIVPTVGL-N-IG-----------RIEVSNSKLVFWDLGGQPGLR 82 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~-~l~~~~~~~~~~~~~~~~~~~~~-~-~~-----------~~~~~~~~~~i~D~~G~~~~~ 82 (170)
.+||+++|+.|+|||||+. ++.+.. -........+.||++. . +. .++.....+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-
Confidence 4799999999999999996 553310 0112234455666642 1 11 23445678999999998752
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccc---------------------c
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPD---------------------A 140 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~---------------------~ 140 (170)
....+++.+|++|+|||++++.+++.+.. |...+.... ++.|+++|+||+|+.+ .
T Consensus 80 -~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
T cd01873 80 -DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADI 156 (195)
T ss_pred -hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCc
Confidence 34557899999999999999999999874 666664432 5789999999999863 3
Q ss_pred CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 141 VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.+.++..+.++ ..+++|+||||++|
T Consensus 157 V~~~e~~~~a~-----~~~~~~~E~SAkt~ 181 (195)
T cd01873 157 LPPETGRAVAK-----ELGIPYYETSVVTQ 181 (195)
T ss_pred cCHHHHHHHHH-----HhCCEEEEcCCCCC
Confidence 45666666665 55678999999987
No 95
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-26 Score=150.48 Aligned_cols=142 Identities=24% Similarity=0.368 Sum_probs=121.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
..|++++|...+|||||+-++.+ +.....+..|+++.++.-++ +..++++|||+|+|.++...-.+++.+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~d------dSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhc------cccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 35999999999999999999987 56666777888887665433 457899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|++||++|.++|..+..|.-.+..+.+ .+.|+|+++||||+.+ -.+.+..+..++ ..+..|+|+|||.|
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw-~naqvilvgnKCDmd~eRvis~e~g~~l~~-----~LGfefFEtSaK~N 168 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSW-DNAQVILVGNKCDMDSERVISHERGRQLAD-----QLGFEFFETSAKEN 168 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeec-cCceEEEEecccCCccceeeeHHHHHHHHH-----HhChHHhhhccccc
Confidence 999999999999999999999999977755 7899999999999986 467777778777 44447999999865
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=1.3e-25 Score=154.81 Aligned_cols=143 Identities=24% Similarity=0.395 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.+ ........++.+.... .+... ...+.+||+||++.+...+..+++.+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 74 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGAD 74 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCC
Confidence 5899999999999999999976 2233333344443322 23333 356789999999999888999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
++|+|+|++++.+++....|...+..... ..+.|+++++||+|+.+ ....++..+.+.. ....+++++||+
T Consensus 75 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 150 (172)
T cd01862 75 CCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAK 150 (172)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECC
Confidence 99999999999999888888777655433 24789999999999973 4455565555541 113689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 151 ~~ 152 (172)
T cd01862 151 EA 152 (172)
T ss_pred CC
Confidence 86
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=1.4e-25 Score=153.52 Aligned_cols=142 Identities=23% Similarity=0.315 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+||+++|++|+|||||++++.. ......+.+++..... ..+.....+.+||+||++.+...+..+++.+++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 74 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEG 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCE
Confidence 4899999999999999999976 2222233333332222 233345679999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+|++++.++.....|+..+.......+.|+++++||+|+.+ .....+..+..+ ....+++++||++|
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 147 (164)
T cd04139 75 FLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTR 147 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCC
Confidence 999999999999999999999888765556899999999999976 344455455444 33468999999986
No 98
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=1.3e-25 Score=153.68 Aligned_cols=141 Identities=30% Similarity=0.500 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.+ ........++.+.... .+... ...+.+||+||++.+...+..+++.+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 74 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD------GKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAV 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCC
Confidence 5899999999999999999986 2223334344444322 33333 367899999999998888899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++.+++.+..|+..+..... ++.|+++++||+|+.+ ....+...+... ...++++++||++|
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 147 (164)
T smart00175 75 GALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTN 147 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence 99999999999999998888887765543 5899999999999876 234455555544 34467999999986
No 99
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=6.8e-26 Score=156.76 Aligned_cols=138 Identities=21% Similarity=0.331 Sum_probs=101.3
Q ss_pred EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EE--EecCeEEEEEEcCCCCcchhhHHHHhhccCEEE
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 96 (170)
|+++|++|+|||||++++.. +.....+.++...... .+ +.....+.+|||||++++...+..+++.+|++|
T Consensus 1 i~i~G~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 74 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT------NAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL 74 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh------CCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEE
Confidence 58999999999999999976 3333334444433322 22 233456999999999999888888999999999
Q ss_pred EEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccce-e
Q 030848 97 FVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV-C 160 (170)
Q Consensus 97 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 160 (170)
+|||++++.+++.+.. |+..+.... ++.|+++++||+|+.+. ...++..+..+ ... .
T Consensus 75 lv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 147 (174)
T smart00174 75 ICFSVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK-----RIGAV 147 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH-----HcCCc
Confidence 9999999999998864 666665432 58999999999999752 22333333333 222 3
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
++++|||++|
T Consensus 148 ~~~e~Sa~~~ 157 (174)
T smart00174 148 KYLECSALTQ 157 (174)
T ss_pred EEEEecCCCC
Confidence 7999999986
No 100
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.94 E-value=7e-26 Score=155.54 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=102.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EE--EEEecCeEEEEEEcCCCCc-chhhHHHHhhccCE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IG--RIEVSNSKLVFWDLGGQPG-LRSIWEKYYEEAHA 94 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ 94 (170)
||+++|++|+|||||++++.. +.....+.++.... .. .++.....+.+||+||++. .......+++.+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 74 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT------KRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADG 74 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh------CccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCE
Confidence 589999999999999999975 22223333333221 11 2333445789999999885 34456678899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|+|+|++++.+++.+..|+..+..... ..+.|+++++||+|+.+ ..+.++..+..+ ...++|+++||++|
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~ 148 (165)
T cd04146 75 FVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAED 148 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCC
Confidence 9999999999999999888877765432 35799999999999864 334555555554 23468999999975
No 101
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.8e-26 Score=148.35 Aligned_cols=142 Identities=27% Similarity=0.409 Sum_probs=119.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
-+|++++|+.|+|||.|+.++.. ....+....|+++.+. .+..+..+++||||+||+.+++....|++.+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie------~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIE------NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHH------hhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 47899999999999999999976 3333444455555543 3445668899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.+.++|||+++.++|+.+..|+..+... ..+++-+++++||.|+.+ +.+..|..++++ ++.+.+.++||++|
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~Faq-----Enel~flETSa~TG 156 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTG 156 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhc-----ccceeeeeeccccc
Confidence 9999999999999999999999888654 347888899999999986 678889999998 77778999999987
No 102
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=2e-25 Score=152.32 Aligned_cols=141 Identities=23% Similarity=0.361 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.. +.......+++.... ..+. .....+.+||+||++.+...+..+++.+|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 74 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVE------NKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDAD 74 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCC
Confidence 5899999999999999999986 222222223332222 1232 23457999999999999888898999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++++++....|+..+..... .+.|+++++||+|+.+. ...++..+..+ ....+++++||++|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~ 147 (162)
T cd04123 75 GAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTG 147 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence 99999999999999999888888866544 37899999999999753 34555555554 34567899999986
No 103
>PLN03108 Rab family protein; Provisional
Probab=99.94 E-value=2.7e-25 Score=158.44 Aligned_cols=143 Identities=27% Similarity=0.384 Sum_probs=111.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|++|+|||||++++.. ........++++.... .+. .....+.+|||+|++.+...+..+++.
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~------~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ 78 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence 468999999999999999999976 2223333445544432 233 334678999999999998888899999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++++|+|++++.+++.+..|+..+.... .++.|+++++||+|+.+ ..+.++..+.++ ...++++++||++
T Consensus 79 ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 152 (210)
T PLN03108 79 AAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKT 152 (210)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence 999999999999999999988888775543 25789999999999976 456666666665 3456899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 153 ~ 153 (210)
T PLN03108 153 A 153 (210)
T ss_pred C
Confidence 6
No 104
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=1.6e-25 Score=158.12 Aligned_cols=143 Identities=18% Similarity=0.274 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcch----h----hH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLR----S----IW 85 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~----~----~~ 85 (170)
+||+++|.+|+|||||++++.. +.....+.|+++.... .+...+ ..+.+|||||.+.+. . ..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~------~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA------QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc------CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHH
Confidence 5899999999999999999976 3334445555543322 233333 678899999965431 1 12
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeE
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCM 161 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 161 (170)
...++.+|++|+|||++++.+++.+..|+..+.... ...+.|+++++||+|+.+. ...++..+... ....++
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~ 150 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCG 150 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCc
Confidence 345689999999999999999999999988887654 2467999999999999652 33333333322 124578
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
|++|||++|
T Consensus 151 ~~e~Sak~g 159 (198)
T cd04142 151 YLECSAKYN 159 (198)
T ss_pred EEEecCCCC
Confidence 999999987
No 105
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=3.8e-25 Score=157.78 Aligned_cols=145 Identities=26% Similarity=0.445 Sum_probs=108.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
.+..+||+++|++|+|||||++++.. ... ..+.++.+.... .+.. ....+.+|||||++.+...+..++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 83 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFIS------SSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYY 83 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHh------CCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH
Confidence 34678999999999999999999976 111 234455554432 2333 346789999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHc-CCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeee
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
+.+|++|+|||++++.+++.+...|..... .....+.|+++|+||+|+... ...++..+... ...++|+++|
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~S 158 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECS 158 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEe
Confidence 999999999999999999988775554443 222356799999999999753 33444444444 3456899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 159 Ak~~ 162 (211)
T PLN03118 159 AKTR 162 (211)
T ss_pred CCCC
Confidence 9986
No 106
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=5.2e-25 Score=149.33 Aligned_cols=141 Identities=29% Similarity=0.505 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE--Ee--cCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+||+++|++|+|||||++++.+ ........++.+...... .. ....+.+||+||++.+...+..+++.+|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 74 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVD------GKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAH 74 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHh------CcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCC
Confidence 5899999999999999999986 333344445555444432 22 3477999999999998888899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc--ccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++++++.+..|+..+..... ...|+++++||+|+. .....++..+... ....+++++||++|
T Consensus 75 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~ 147 (159)
T cd00154 75 GAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTG 147 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCC
Confidence 99999999999999999988888766542 578999999999995 4556666666665 35678999999975
No 107
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=8.5e-26 Score=149.33 Aligned_cols=144 Identities=26% Similarity=0.405 Sum_probs=123.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-----EEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-----RIEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
..+|+.++|++-+|||||+..+.. +....-..||.++.+. .-++...++++|||+|++.+++....|++
T Consensus 7 yqfrlivigdstvgkssll~~ft~------gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyr 80 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTE------GKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYR 80 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhc------CcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhh
Confidence 458999999999999999999976 6666667788887754 23345678999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
++-++++|||++|.++|+.+..|..+...... +.++-..+|++|+|+.. .+..+|.++..+ .....|+|+||
T Consensus 81 nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa-----~hgM~FVETSa 155 (213)
T KOG0091|consen 81 NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA-----SHGMAFVETSA 155 (213)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH-----hcCceEEEecc
Confidence 99999999999999999999999999877665 34455678899999975 788899999988 77788999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 156 k~g 158 (213)
T KOG0091|consen 156 KNG 158 (213)
T ss_pred cCC
Confidence 987
No 108
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5e-26 Score=148.43 Aligned_cols=143 Identities=26% Similarity=0.461 Sum_probs=117.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
--+||+++|..|+|||.|+.++.. +.+++....|+++.++ .++++..+++||||+|++++++..+.|++.
T Consensus 6 flfkivlvgnagvgktclvrrftq------glfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrs 79 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRS 79 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhc------cCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhh
Confidence 457999999999999999999977 7778888888888766 344566889999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++|+|||+++..+|+-+-+|+.++.++.. .++--|+|+||+|+.+. +-++.+-+.+. +....-|.++||+.
T Consensus 80 ahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs----~~qdmyfletsake 153 (213)
T KOG0095|consen 80 AHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFS----EAQDMYFLETSAKE 153 (213)
T ss_pred cceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHH----Hhhhhhhhhhcccc
Confidence 9999999999999999999999999987754 56777999999999763 44444444333 23455688888874
No 109
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.93 E-value=5.3e-25 Score=154.86 Aligned_cols=140 Identities=24% Similarity=0.320 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC-cccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
+||+++|++|+|||||++++.. +.+.. .+.+|++..+. .+... ...+.+||++|++++..++..+++.+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~ 74 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVH------HRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGA 74 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCC
Confidence 5899999999999999999976 33322 34555554432 23333 35678999999999988888899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC------CHHHHHhHhCccccccceeEEEeee
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV------SADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
|++++|||++++.+++....|+..+.... ++.|+++|+||+|+.+.. ...++.+... ...++++++|
T Consensus 75 d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~S 147 (193)
T cd04118 75 KAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-----EIKAQHFETS 147 (193)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHH-----HcCCeEEEEe
Confidence 99999999999999999888888776532 478999999999986421 2233444333 3346799999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 148 a~~~ 151 (193)
T cd04118 148 SKTG 151 (193)
T ss_pred CCCC
Confidence 9986
No 110
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.93 E-value=2.6e-25 Score=153.94 Aligned_cols=140 Identities=19% Similarity=0.322 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+|++++|++|+|||||++++.. +.+...+.+|..... ..+.. ....+.+||+||++.+...+..+++.+|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~ 74 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT------NGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDV 74 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcE
Confidence 5899999999999999999976 333444445442221 12223 34678999999999998888889999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccce
Q 030848 95 VVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV 159 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 159 (170)
+|+|||++++.+++... .|+..+... .++.|+++++||+|+.+. ...++..+..+ ...
T Consensus 75 ~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~ 147 (173)
T cd04130 75 FLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE-----KIG 147 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH-----HhC
Confidence 99999999999998875 466555532 256899999999998642 22333333333 223
Q ss_pred -eEEEeeeccCC
Q 030848 160 -CMFEAVSGYDG 170 (170)
Q Consensus 160 -~~~~~~Sa~~g 170 (170)
.+|++|||++|
T Consensus 148 ~~~~~e~Sa~~~ 159 (173)
T cd04130 148 ACEYIECSALTQ 159 (173)
T ss_pred CCeEEEEeCCCC
Confidence 38999999986
No 111
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.93 E-value=2.6e-25 Score=153.86 Aligned_cols=141 Identities=18% Similarity=0.292 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+||+++|++|+|||||++++.. +.....+.++...... .+.. ....+.+|||||++.+...+..+++.+|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 74 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 74 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCE
Confidence 5899999999999999999976 3333334444432221 2333 33558899999999998888888999999
Q ss_pred EEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCccccccce
Q 030848 95 VVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLDERV 159 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~ 159 (170)
+++|+|++++.+++.... |...+... .++.|+++++||+|+.+.. ..++..+..+ ....
T Consensus 75 ~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~ 148 (174)
T cd04135 75 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK----EIGA 148 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH----HcCC
Confidence 999999999999988865 44444332 3689999999999986532 2223333332 1122
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
.+|++|||++|
T Consensus 149 ~~~~e~Sa~~~ 159 (174)
T cd04135 149 HCYVECSALTQ 159 (174)
T ss_pred CEEEEecCCcC
Confidence 47999999986
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=4.7e-25 Score=151.68 Aligned_cols=142 Identities=19% Similarity=0.238 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
+||+++|++|+|||||++++.. +........+...... .+......+.+|||||++++...+..+++.+|++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVS------EEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVI 74 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEE
Confidence 4899999999999999999976 2222222221111111 2334567899999999988877777778999999
Q ss_pred EEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhCccccccceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|++++.+++.+.. |...+... . .+.|+++++||+|+.+.... ++........ ....++++|||++|
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~~i~~~-~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~Sa~~~ 149 (166)
T cd01893 75 CLVYSVDRPSTLERIRTKWLPLIRRL-G-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF---REIETCVECSAKTL 149 (166)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHH---hcccEEEEeccccc
Confidence 99999999999998765 44444332 2 47899999999999774432 2222211111 11137999999986
No 113
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.93 E-value=8.6e-25 Score=154.42 Aligned_cols=116 Identities=21% Similarity=0.335 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe-------cCeEEEEEEcCCCCcchhhHHHH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV-------SNSKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~i~D~~G~~~~~~~~~~~ 88 (170)
+||+++|++|+|||||++++.. +.+...+.+|++.... .+.+ +...+.+|||+|++.+..++..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~------~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~ 74 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK------NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF 74 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHH
Confidence 5899999999999999999987 4444556677765433 2332 34679999999999999999999
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCC------------------CCCCCcEEEEeeCCCccc
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE------------------DLQGAPLLILANKQDLPD 139 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ii~v~nK~D~~~ 139 (170)
++.+|++|+|||++++.+++++..|+..+.... ...+.|+++|+||.|+.+
T Consensus 75 yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 75 YNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred hCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999999999999999999999999986532 224689999999999965
No 114
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=5.5e-25 Score=151.84 Aligned_cols=143 Identities=19% Similarity=0.225 Sum_probs=104.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCC-CcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
++.+|++++|.+|+|||||++++.+ +... ..+.+|++.... .+. .....+.+||++|++.+...+..++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~ 75 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG------RSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAEL 75 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC------CCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhh
Confidence 5779999999999999999999976 3333 455566654432 233 3346789999999999988888889
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHHHHHhHhCccccccceeEEEeeec
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+++|++|+|+|++++.+++.+..|+..+.. ..+.|+++|+||+|+.+.. ...+..+..+..+. .+++++||
T Consensus 76 ~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa 148 (169)
T cd01892 76 AACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL----PPPLHFSS 148 (169)
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCC----CCCEEEEe
Confidence 999999999999999999888777765532 2478999999999996432 12222222221111 13588999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 149 ~~~ 151 (169)
T cd01892 149 KLG 151 (169)
T ss_pred ccC
Confidence 876
No 115
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=1.2e-24 Score=156.08 Aligned_cols=140 Identities=24% Similarity=0.247 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCC-CcccCCcc--eeEE--EEEecCeEEEEEEcCCCCcchhhHHHHhh-c
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVG--LNIG--RIEVSNSKLVFWDLGGQPGLRSIWEKYYE-E 91 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~-~~~~~~~~--~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~ 91 (170)
+||+++|++|+|||||++++.. +.+. ..+.++.+ .... .++.....+.+||+||++ ......+++ .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~------~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ 72 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTS------GEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQ 72 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhc------CCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcC
Confidence 4899999999999999999965 2222 23333332 2222 333456779999999998 223345566 8
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++++|||++++.+++....|+..+.......+.|+++|+||+|+.+. ...++..+... ...++++++||++
T Consensus 73 ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~SA~~ 147 (221)
T cd04148 73 GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAV-----VFDCKFIETSAGL 147 (221)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHH-----HcCCeEEEecCCC
Confidence 9999999999999999999998888866544467999999999999653 34444444433 3346899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 148 ~ 148 (221)
T cd04148 148 Q 148 (221)
T ss_pred C
Confidence 6
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=2.1e-24 Score=150.22 Aligned_cols=142 Identities=23% Similarity=0.293 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EEEEEec--CeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
.||+++|++|+|||||++++.. ........+++... ...+... ...+.+||+||++++...+..++..+++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 75 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE------GHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHG 75 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh------CCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCE
Confidence 5899999999999999999986 22223333443322 2223333 3568999999999998888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+|+++..+++.+..++..+.......+.|+++++||+|+.. ....++..+..+ ...++++++||++|
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 148 (180)
T cd04137 76 YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSAREN 148 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence 999999999999999999999988876556789999999999974 233334443333 23368999999986
No 117
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=1.8e-24 Score=147.23 Aligned_cols=141 Identities=26% Similarity=0.370 Sum_probs=108.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEec--CeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
||+++|++|+|||||++++.+ ........++..... ..+... ...+.+||+||++.+...+..+++.+|++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 74 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK------GTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGF 74 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEE
Confidence 689999999999999999976 222233333333221 123333 46799999999999988888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|+++++++.....++..+.........|+++++||+|+.. ....+++.+... ....+++++||++|
T Consensus 75 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~ 146 (160)
T cd00876 75 ILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDN 146 (160)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCC
Confidence 99999999999999999999888765546899999999999976 334455555555 33368999999986
No 118
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=6e-24 Score=146.28 Aligned_cols=145 Identities=25% Similarity=0.438 Sum_probs=105.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
+..++|+++|++|+|||||++++.. +...+...++++... ..+...+ ..+.+||+||++.+...+..+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 78 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYR 78 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc
Confidence 4568999999999999999999975 233333344444322 2233433 56899999999999888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEEeeeccC
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
.+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+... ..+..+.+. .....+++++||++
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~ 153 (169)
T cd04114 79 SANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKE 153 (169)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCC
Confidence 9999999999999999988888877665432 24689999999999975322 222222222 12336899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 154 ~ 154 (169)
T cd04114 154 S 154 (169)
T ss_pred C
Confidence 6
No 119
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=1.9e-24 Score=152.70 Aligned_cols=142 Identities=20% Similarity=0.306 Sum_probs=106.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcc-eeEEEEEecC--eEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
||+++|++|+|||||++++.. +.....+.++.. .....+.+.+ ..+.+||+||+..+...+..+++.+|++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 74 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLY------DTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAF 74 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEE
Confidence 689999999999999999976 233333333432 2222344444 6799999999999988888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc---CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|+|+|++++.+++....|+..+.......+.|+++++||+|+.+. ...++..+... .....+++++||++|
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g 148 (198)
T cd04147 75 ALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDN 148 (198)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCC
Confidence 999999999999999999888887665567999999999999652 22223332222 122457999999986
No 120
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=1.2e-24 Score=150.57 Aligned_cols=141 Identities=23% Similarity=0.323 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
.||+++|++|+|||||++++.. +.+...+.++...... .+.. ....+.+|||||++.+...+..+++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 75 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCE
Confidence 5899999999999999999987 3333444455544322 2333 44578999999999888877778899999
Q ss_pred EEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccCCH--------------HHHHhHhCccccccce
Q 030848 95 VVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAVSA--------------DELARYLDLKKLDERV 159 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~--------------~~~~~~~~~~~~~~~~ 159 (170)
+++|+|++++++++.... |...+... ..+.|+++++||+|+.+.... .+..+..+ ....
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~----~~~~ 149 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN----KIGA 149 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH----HcCC
Confidence 999999999999988865 55555432 257899999999998653221 11222221 1123
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
.++++|||++|
T Consensus 150 ~~~~~~Sa~~~ 160 (175)
T cd01870 150 FGYMECSAKTK 160 (175)
T ss_pred cEEEEeccccC
Confidence 48999999986
No 121
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.93 E-value=1.6e-24 Score=149.34 Aligned_cols=142 Identities=23% Similarity=0.350 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE---EEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI---GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+||+++|++|+|||||++++.+ +.......++..... .........+.+||+||++++......+++.+|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~ 74 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTT------GKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDV 74 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCE
Confidence 5899999999999999999987 222222223332221 1233445679999999999887777788899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-------------HHHHHhHhCccccccceeE
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-------------ADELARYLDLKKLDERVCM 161 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 161 (170)
+++|+|++++.++......+........ .+.|+++++||+|+.+... .++..+... .....+
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~ 149 (171)
T cd00157 75 FLICFSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK----EIGAIG 149 (171)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH----HhCCeE
Confidence 9999999999888776554443333222 4799999999999986543 233333333 122238
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
++++||++|
T Consensus 150 ~~~~Sa~~~ 158 (171)
T cd00157 150 YMECSALTQ 158 (171)
T ss_pred EEEeecCCC
Confidence 999999986
No 122
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=152.59 Aligned_cols=144 Identities=24% Similarity=0.350 Sum_probs=125.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
..+|++++|.+|+|||+|+.++.. +.+...+.||++..+. .++.+...+.|+||+|++++..+...+++..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~------~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~ 75 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLT------GRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNG 75 (196)
T ss_pred CceEEEEECCCCCCcchheeeecc------cccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccC
Confidence 468999999999999999999987 6777778888875433 3444557799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|+.++||++++..||+.+..++..+....+....|+++|+||+|+.. .++.++.....+ ...++|+|+||+.+
T Consensus 76 ~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~-----~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 76 DGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR-----SWGCAFIETSAKLN 150 (196)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH-----hcCCcEEEeeccCC
Confidence 99999999999999999999999997766667789999999999986 788888888866 78889999999864
No 123
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.9e-26 Score=150.93 Aligned_cols=142 Identities=24% Similarity=0.405 Sum_probs=118.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe-----------cCeEEEEEEcCCCCcchhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV-----------SNSKLVFWDLGGQPGLRSI 84 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~i~D~~G~~~~~~~ 84 (170)
++.+..|++|+|||||+.+... +.+.+.+-.|+++.+.. +.+ +...+++|||+|+|++++.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD------~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTD------GKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred HHHHhhccCCCCceEEEEEecC------CcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 5778899999999999988865 56666666777776542 111 2357999999999999999
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEE
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
.-.+++++.+.|++||+++..+|-+++.|+.++.....-.++-|++++||+|+++ .++.+++.+.+. ...+||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~-----kyglPY 158 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALAD-----KYGLPY 158 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHH-----HhCCCe
Confidence 9999999999999999999999999999999997665556788999999999987 566677777776 677899
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+|+||-+|
T Consensus 159 fETSA~tg 166 (219)
T KOG0081|consen 159 FETSACTG 166 (219)
T ss_pred eeeccccC
Confidence 99999876
No 124
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=8.4e-24 Score=151.24 Aligned_cols=145 Identities=17% Similarity=0.375 Sum_probs=113.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHH
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~ 88 (170)
.....+|++++|++|+|||||++++.. +.....+.+|.+........ ....+.+||++|++.+...+..+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~ 78 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLT------GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGY 78 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHH
Confidence 345679999999999999999988765 44445566777766554332 45789999999999998888889
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
++.++++++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+..+..+ ...+.++++||+
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~ 151 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHR-----KKNLQYYDISAK 151 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHH-----HcCCEEEEEeCC
Confidence 999999999999999999999998888886543 5789999999999865433333333333 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 152 ~~ 153 (215)
T PTZ00132 152 SN 153 (215)
T ss_pred CC
Confidence 76
No 125
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=136.02 Aligned_cols=153 Identities=39% Similarity=0.672 Sum_probs=137.9
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCcchhhHHHHh
Q 030848 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
.+.+..++||++.|-.++|||||++.+.. ..+....||.+++...+...+ ..+.+||.+|+..++..|..|+
T Consensus 11 ks~t~rEirilllGldnAGKTT~LKqL~s-------ED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYy 83 (185)
T KOG0074|consen 11 KSRTRREIRILLLGLDNAGKTTFLKQLKS-------EDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYY 83 (185)
T ss_pred cCCCcceEEEEEEecCCCcchhHHHHHcc-------CChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhh
Confidence 34467899999999999999999999964 444566788899988888877 8999999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
.+.|++|||+|.++...|+++.+.+.+++........|+.+..||.|+..+...+++...+....++.+.+++.+|||.+
T Consensus 84 envd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals 163 (185)
T KOG0074|consen 84 ENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALS 163 (185)
T ss_pred hccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcccc
Confidence 99999999999999999999988888888877777899999999999999999999999999999999999999999986
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
+
T Consensus 164 ~ 164 (185)
T KOG0074|consen 164 L 164 (185)
T ss_pred c
Confidence 4
No 126
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.91 E-value=2e-23 Score=146.28 Aligned_cols=142 Identities=25% Similarity=0.365 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EE--EecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
+.||+++|++|+|||||++++.. +...+.+.++....+. .+ +.....+.+||++|++.+......+++.+|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~ 74 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTL------GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAH 74 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCC
Confidence 36899999999999999999975 2233333344333222 22 233456899999999888776666789999
Q ss_pred EEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccc------------CCHHHHHhHhCcccccccee
Q 030848 94 AVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA------------VSADELARYLDLKKLDERVC 160 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~ 160 (170)
++++|+|+++.++++.+.. |...+.... ++.|+++++||+|+.+. ...++..+..+ .....
T Consensus 75 ~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 148 (187)
T cd04129 75 VILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAK----EIGAK 148 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHH----HhCCc
Confidence 9999999999999998875 555554432 56999999999998542 12233333333 11234
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
+|++|||++|
T Consensus 149 ~~~e~Sa~~~ 158 (187)
T cd04129 149 KYMECSALTG 158 (187)
T ss_pred EEEEccCCCC
Confidence 7999999987
No 127
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=3.8e-23 Score=153.30 Aligned_cols=134 Identities=19% Similarity=0.343 Sum_probs=105.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---------------cCeEEEEEEcCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---------------SNSKLVFWDLGG 77 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------------~~~~~~i~D~~G 77 (170)
...+||+++|+.|+|||||++++.. +.+...+.+|++..+. .+.+ +...+.||||+|
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~------g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG 92 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVK------GSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG 92 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhc------CCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence 4568999999999999999999986 4444556677766543 2332 235699999999
Q ss_pred CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-----------CCCCcEEEEeeCCCccccC-----
Q 030848 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-----------LQGAPLLILANKQDLPDAV----- 141 (170)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ii~v~nK~D~~~~~----- 141 (170)
++.+..++..+++.++++|+|||+++..+++.+..|+..+..... ..+.|+++|+||+|+.+..
T Consensus 93 qErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~ 172 (334)
T PLN00023 93 HERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS 172 (334)
T ss_pred ChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence 999999999999999999999999999999999999998876421 1358999999999996531
Q ss_pred ---CHHHHHhHhCccc
Q 030848 142 ---SADELARYLDLKK 154 (170)
Q Consensus 142 ---~~~~~~~~~~~~~ 154 (170)
..++..+.+...+
T Consensus 173 s~~~~e~a~~~A~~~g 188 (334)
T PLN00023 173 SGNLVDAARQWVEKQG 188 (334)
T ss_pred ccccHHHHHHHHHHcC
Confidence 3556666665433
No 128
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.90 E-value=1e-22 Score=140.25 Aligned_cols=144 Identities=26% Similarity=0.315 Sum_probs=95.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCc-------chhhHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPG-------LRSIWEKYYE 90 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~-------~~~~~~~~~~ 90 (170)
+|+++|.+|+|||||+|++.+.......... .+.......+...+. .+.+|||||..+ +...+...++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~----~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPF----TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCc----cccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence 6899999999999999999763221111111 122223333455555 899999999531 1222223345
Q ss_pred ccCEEEEEEeCCCc-ccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccCCHHHHHh-HhCccccccceeEEEeeec
Q 030848 91 EAHAVVFVIDAACP-SRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSADELAR-YLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 91 ~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa 167 (170)
.+|++++|+|++++ .+++....|...+..... ..+.|+++++||+|+.+.....+..+ ... .....+++++||
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 153 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK----ELWGKPVFPISA 153 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh----hCCCCCEEEEec
Confidence 69999999999998 788888888777755421 24689999999999976444333332 222 113567999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 154 ~~~ 156 (170)
T cd01898 154 LTG 156 (170)
T ss_pred CCC
Confidence 976
No 129
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=2.6e-24 Score=141.64 Aligned_cols=143 Identities=22% Similarity=0.345 Sum_probs=114.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEE--EecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRI--EVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
-.+|+++.|+.=+|||||+-++.. +.+......|+... ...+ ......+.||||+|++.+...-+.|++.
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~E------nkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg 85 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVE------NKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG 85 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHH------hhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence 458999999999999999988865 22222222221111 1122 2345679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++|+|||+++.++|+.++.|..++....+ ...-+++|+||+|+.. ..+.++.+.++. .....++++||+.
T Consensus 86 SnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YAe-----svGA~y~eTSAk~ 159 (218)
T KOG0088|consen 86 SNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYAE-----SVGALYMETSAKD 159 (218)
T ss_pred CCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHHH-----hhchhheeccccc
Confidence 9999999999999999999999999987765 6678999999999986 678899999888 6777899999986
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
+
T Consensus 160 N 160 (218)
T KOG0088|consen 160 N 160 (218)
T ss_pred c
Confidence 4
No 130
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.1e-23 Score=133.40 Aligned_cols=143 Identities=24% Similarity=0.379 Sum_probs=118.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+|..++|+.|+|||+|+..+.. ..+-..++.++++.+. .+.++..++++|||.|+++++.....|++.
T Consensus 10 yifkyiiigdmgvgkscllhqfte------kkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHH------HHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 457889999999999999999865 2333344455555433 456677899999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+.+.+.|+|++...++..+..|+....+.. .++.-+++++||.|+.. ...-+|..++.. ++...|.++|||+
T Consensus 84 aagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~fae-----engl~fle~sakt 157 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAE-----ENGLMFLEASAKT 157 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHh-----hcCeEEEEecccc
Confidence 999999999999999999988888775543 47888999999999986 577888888887 7788899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 158 g 158 (215)
T KOG0097|consen 158 G 158 (215)
T ss_pred c
Confidence 7
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.90 E-value=3.3e-22 Score=137.49 Aligned_cols=142 Identities=19% Similarity=0.211 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc----h-----hhHHHH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----R-----SIWEKY 88 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~-----~~~~~~ 88 (170)
.+|+++|.+|+|||||++++.+...... .....|.......+...+..+.+|||||.... . ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA----PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC----CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHH
Confidence 3789999999999999999987321111 11122444444455566789999999996321 0 111111
Q ss_pred hhccCEEEEEEeCCCcccH--HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 89 YEEAHAVVFVIDAACPSRF--EDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
...+|++|+|+|+++..++ +....++..+.... .+.|+++++||+|+.+.....+..+... ....++++||
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S 149 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEEEE-----LEGEEVLKIS 149 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHhhh-----hccCceEEEE
Confidence 2346899999999987653 55556666664432 4789999999999976444333323222 3457899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 150 a~~~ 153 (168)
T cd01897 150 TLTE 153 (168)
T ss_pred eccc
Confidence 9986
No 132
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=1.7e-22 Score=138.11 Aligned_cols=144 Identities=20% Similarity=0.161 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcc--cCCcceeEEEEEec-CeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+.|+++|.+|+|||||++++.+... +...... ..+.+.....+... +..+.+|||||++.+......+++.+|+
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ 77 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIET---DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDL 77 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCccc---ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence 4689999999999999999975211 1111111 12333434444544 6789999999999887766777889999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+|+++... ......+..+ ... ...|+++++||+|+.+... .+++.+.++... ....+++++||++|
T Consensus 78 ii~V~d~~~~~~-~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~ 151 (164)
T cd04171 78 VLLVVAADEGIM-PQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTG 151 (164)
T ss_pred EEEEEECCCCcc-HhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCC
Confidence 999999986321 1122222211 111 2348999999999976432 233333333111 13568999999986
No 133
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=7.5e-22 Score=139.06 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCC------------CcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW 85 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 85 (170)
.+|+++|.+++|||||++++............ .....+.......+..++..+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 47999999999999999999752211111100 001112222333466778899999999999999999
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCcccc--cccee
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKL--DERVC 160 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~ 160 (170)
..+++.+|++++|+|+++.. ......++..... .+.|+++++||+|+.+... .+++.+.++.... ....+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998743 2333333333322 3678999999999975332 2333443321111 22367
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
+++++||++|
T Consensus 158 ~iv~~Sa~~g 167 (194)
T cd01891 158 PVLYASAKNG 167 (194)
T ss_pred CEEEeehhcc
Confidence 8999999986
No 134
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.6e-24 Score=139.01 Aligned_cols=137 Identities=29% Similarity=0.486 Sum_probs=109.1
Q ss_pred EEcCCCCChHHHHHHHHhhcccCCCCC-CCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEE
Q 030848 22 ILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (170)
Q Consensus 22 vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 96 (170)
++|++++|||.|+-++.. +.+ ...+-.|+++.+. .++...+++++|||+||+++++....|++++|+.+
T Consensus 2 llgds~~gktcllir~kd------gafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~all 75 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKD------GAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALL 75 (192)
T ss_pred ccccCccCceEEEEEecc------CceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceee
Confidence 689999999999877633 111 1233345555443 23445678999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 97 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++||+.+..+|++...|+.++-++.. ..+.+.+++||+|+.. ....++.++... ...+||+++|||+|
T Consensus 76 llydiankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~-----~y~ipfmetsaktg 145 (192)
T KOG0083|consen 76 LLYDIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAE-----AYGIPFMETSAKTG 145 (192)
T ss_pred eeeecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHH-----HHCCCceecccccc
Confidence 99999999999999999999977643 5678899999999954 566666666666 67789999999997
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.89 E-value=2.1e-21 Score=131.23 Aligned_cols=143 Identities=24% Similarity=0.301 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEecC--eEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
++||+++|.+|+|||||++++... .......+++...... +...+ ..+.+||+||++.+...+..+.+.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 74 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGN------KFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAV 74 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC------CCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhh
Confidence 479999999999999999999872 2222333344444333 44555 6789999999999988888888999
Q ss_pred CEEEEEEeCCCc-ccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACP-SRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+.++.++|.... .++.... .+...+..... .+.|+++++||+|+.......+....+.. ....+++++||++|
T Consensus 75 ~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~ 149 (161)
T TIGR00231 75 ESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETG 149 (161)
T ss_pred hEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCC
Confidence 999999999876 6665554 55555554443 27899999999999765444444444432 22346999999876
No 136
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=1.6e-21 Score=135.40 Aligned_cols=145 Identities=18% Similarity=0.193 Sum_probs=93.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCC-CCCCcccCCc------ceeE----EEE-----EecCeEEEEEEcCCCCcch
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRIVPTV------GLNI----GRI-----EVSNSKLVFWDLGGQPGLR 82 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-~~~~~~~~~~------~~~~----~~~-----~~~~~~~~i~D~~G~~~~~ 82 (170)
+|+++|++++|||||++++.+....... .....+.++. +... ... +..+..+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6899999999999999999763221111 1111111111 1111 112 3356779999999999999
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
..+..+++.+|++|+|+|+++..+.+....+.. ... .+.|+++++||+|+.+........+..+... ....++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLG--LDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC--CCcccE
Confidence 888999999999999999998766655444432 222 4678999999999865322211112211111 122358
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+++||++|
T Consensus 155 ~~~Sa~~g 162 (179)
T cd01890 155 ILVSAKTG 162 (179)
T ss_pred EEeeccCC
Confidence 99999987
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=9.3e-22 Score=148.39 Aligned_cols=144 Identities=23% Similarity=0.300 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCCCc-------chhhHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPG-------LRSIWEKYY 89 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~-------~~~~~~~~~ 89 (170)
..|+++|.++||||||+|++....+.+.....++..|+ ...+.. ...++.+||+||..+ +...+..++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~----~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPN----LGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCce----EEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 57899999999999999999875444443333333333 334555 456799999999432 333445566
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccCCHH--HHHhHhCccccccceeEEEeee
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSAD--ELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~S 166 (170)
++++++++|+|+++.++++....|..++..+.. ..+.|+++|+||+|+.+..... +....+. ....+++++|
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~-----~~~~~i~~iS 309 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELA-----ALGGPVFLIS 309 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHH-----hcCCCEEEEE
Confidence 789999999999988888888888888765432 2468999999999997643322 2222222 2346799999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 310 Aktg 313 (335)
T PRK12299 310 AVTG 313 (335)
T ss_pred cCCC
Confidence 9986
No 138
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.88 E-value=5.7e-23 Score=142.04 Aligned_cols=142 Identities=20% Similarity=0.346 Sum_probs=109.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EE-EecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RI-EVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+|+++||+.++|||+++..+.. +.++..+.||.-.++. .+ +.+...+.+|||+||+++...++..+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~------~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~ 76 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT------NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQ 76 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc------CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCC
Confidence 468999999999999999988866 5666667676665443 34 3667889999999999999988888899
Q ss_pred cCEEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCccccc
Q 030848 92 AHAVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLD 156 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~~ 156 (170)
+|++|+||++.++.++++... |+-++.... ++.|+++|++|.||.+ ....++..+..+.
T Consensus 77 tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~---- 150 (198)
T KOG0393|consen 77 TDVFLLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKE---- 150 (198)
T ss_pred CCEEEEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHH----
Confidence 999999999999999988654 555555544 8999999999999984 2233344444442
Q ss_pred cceeEEEeeeccC
Q 030848 157 ERVCMFEAVSGYD 169 (170)
Q Consensus 157 ~~~~~~~~~Sa~~ 169 (170)
.....|+||||++
T Consensus 151 iga~~y~EcSa~t 163 (198)
T KOG0393|consen 151 IGAVKYLECSALT 163 (198)
T ss_pred hCcceeeeehhhh
Confidence 2236799999986
No 139
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.88 E-value=2.2e-21 Score=137.68 Aligned_cols=142 Identities=23% Similarity=0.281 Sum_probs=93.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCc---------chhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPG---------LRSI 84 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~---------~~~~ 84 (170)
...++|+++|++|+|||||+|++.+...... ....++.......+...+. .+.+|||||... +...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE----DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC----CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH
Confidence 4458999999999999999999987321111 1122333333334444443 899999999632 1111
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
+ ..+..+|++++|+|++++.++.....+...+. .....+.|+++|+||+|+.+..... +.+. ....++++
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~-~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~-----~~~~~~~~ 184 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLK-ELGAEDIPMILVLNKIDLLDDEELE---ERLE-----AGRPDAVF 184 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHH-HcCcCCCCEEEEEEccccCChHHHH---HHhh-----cCCCceEE
Confidence 1 23568999999999999888776655544443 3333568999999999997643322 2222 34567999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 185 ~Sa~~~ 190 (204)
T cd01878 185 ISAKTG 190 (204)
T ss_pred EEcCCC
Confidence 999986
No 140
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.88 E-value=1.6e-21 Score=146.91 Aligned_cols=146 Identities=23% Similarity=0.324 Sum_probs=101.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCc-------chhhHHHH
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKY 88 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~ 88 (170)
...|+++|.+++|||||++++....+.+.....++..|+.+ .+...+ ..+.+||+||..+ +...+...
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig----~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh 232 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG----VVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKH 232 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE----EEEeCCceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence 36799999999999999999987544443333444444433 355555 7899999999532 33344445
Q ss_pred hhccCEEEEEEeCCCc---ccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848 89 YEEAHAVVFVIDAACP---SRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
+.+++++++|+|+++. .+++....|..++..+. ...+.|+++|+||+|+.++...++..+.+.. ....++++
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~ 308 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFP 308 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEE
Confidence 6689999999999976 56777777776665442 2247899999999999765444444443331 22357999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 309 iSAktg 314 (329)
T TIGR02729 309 ISALTG 314 (329)
T ss_pred EEccCC
Confidence 999975
No 141
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=5.9e-22 Score=128.97 Aligned_cols=116 Identities=26% Similarity=0.470 Sum_probs=81.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
||+|+|++|+|||||++++.+...............+..............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999998732220111112222333333334444555699999999988887777778999999999
Q ss_pred EeCCCcccHHHHHHH---HHHHHcCCCCCCCcEEEEeeCCC
Q 030848 99 IDAACPSRFEDSKTA---LEKVLRNEDLQGAPLLILANKQD 136 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~ii~v~nK~D 136 (170)
||++++.+++.+..+ +..+... .++.|+++++||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887554 4444332 24699999999998
No 142
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.5e-21 Score=126.70 Aligned_cols=159 Identities=37% Similarity=0.629 Sum_probs=136.0
Q ss_pred hHHHHhhhccC-ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848 5 FYGLWKYIFTK-TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (170)
Q Consensus 5 ~~~~~~~~~~~-~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 83 (170)
++..|...... .+++++++|--|+||+++..++.- .......|+++.+...+.+++.++++||+.|+-.++.
T Consensus 5 ~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqv-------gevvttkPtigfnve~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 5 FSSLFKALQGPEREMRILILGLDGAGKTTILYRLQV-------GEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred HHHHHHHhcCCccceEEEEeeccCCCeeEEEEEccc-------CcccccCCCCCcCccccccccccceeeEccCcccccH
Confidence 33344333333 789999999999999999988743 1223455788888888899999999999999999999
Q ss_pred hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEE
Q 030848 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
.|.-|+.+.+.+|||+|.+|.+........+..++......+..++++.||.|........|....++...+..+.+.++
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv 157 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIV 157 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEE
Confidence 99999999999999999999998888888888888776667788999999999999999999999999888888899999
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||.+|
T Consensus 158 ~tSA~kg 164 (182)
T KOG0072|consen 158 KTSAVKG 164 (182)
T ss_pred eeccccc
Confidence 9999886
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.86 E-value=7.7e-21 Score=127.26 Aligned_cols=138 Identities=28% Similarity=0.430 Sum_probs=99.7
Q ss_pred EEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (170)
Q Consensus 22 vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 97 (170)
++|++|+|||||++++.+.... .....++. ........ .+..+.+||+||..........+++.+|++++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-----~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 74 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-----PEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIIL 74 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-----Ccccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEE
Confidence 5899999999999999872221 12222232 33333333 26789999999988887777778899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHH---hHhCccccccceeEEEeeeccCC
Q 030848 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELA---RYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|+|++++.+......++..........+.|+++++||+|+.+....+... ... ....++++++|+++|
T Consensus 75 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~ 145 (157)
T cd00882 75 VYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA-----KELGVPYFETSAKTG 145 (157)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH-----hhcCCcEEEEecCCC
Confidence 99999998888887774444444445789999999999998755544432 222 245678999999875
No 144
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=4.5e-20 Score=128.84 Aligned_cols=147 Identities=22% Similarity=0.224 Sum_probs=99.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCC-C-----------CcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP-P-----------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 86 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 86 (170)
+|+++|.+|+|||||+|++.+......... . .....+...........+..+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999976322211100 0 0011222333334555678899999999988888888
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhCcccc-------
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKL------- 155 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~~~~~------- 155 (170)
.+++.+|++++|+|++++..... ...+..... .+.|+++++||+|+..+... .++.+.++....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999987665432 233333322 47899999999999864433 334444443222
Q ss_pred --ccceeEEEeeeccCC
Q 030848 156 --DERVCMFEAVSGYDG 170 (170)
Q Consensus 156 --~~~~~~~~~~Sa~~g 170 (170)
.....+++++||++|
T Consensus 156 ~~~~~~~~v~~~Sa~~g 172 (189)
T cd00881 156 TRNGLLVPIVPGSALTG 172 (189)
T ss_pred cccCCcceEEEEecccC
Confidence 345788999999986
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.86 E-value=2.1e-21 Score=130.16 Aligned_cols=123 Identities=19% Similarity=0.163 Sum_probs=81.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-----cchhhHHHHhhccC
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----GLRSIWEKYYEEAH 93 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~ 93 (170)
||+++|++|+|||||++++.+. .. .+.+|.... ... .+|||||+. .+.... ..++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~------~~--~~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE------EI--LYKKTQAVE-----YND---GAIDTPGEYVENRRLYSALI-VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC------cc--ccccceeEE-----EcC---eeecCchhhhhhHHHHHHHH-HHhhcCC
Confidence 7999999999999999999762 11 122333222 222 689999973 222232 3468999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++.++... .|. .. . ..|+++++||+|+.+ ....++..+.++.. ...+++++||++|
T Consensus 65 ~vilv~d~~~~~s~~~~-~~~-~~---~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~ 130 (142)
T TIGR02528 65 VIALVQSATDPESRFPP-GFA-SI---F---VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDE 130 (142)
T ss_pred EEEEEecCCCCCcCCCh-hHH-Hh---c---cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCC
Confidence 99999999999887542 222 21 1 238999999999965 33444444544421 1237999999986
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=1.6e-20 Score=129.01 Aligned_cols=142 Identities=20% Similarity=0.202 Sum_probs=91.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
.|+++|.+|+|||||++++... ...... ....+.......+.. .+..+.+|||||++.+...+..+++.+|++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~--~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~i 77 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT--NVAAGE--AGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIA 77 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc--cccccc--CCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEE
Confidence 5899999999999999999762 111111 111222222233333 367899999999998888888888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC---ccc--cccceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD---LKK--LDERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~Sa~~g 170 (170)
++|+|+++....+ ....+..+.. .+.|+++++||+|+.... .+...+.+. ... .....++++++||++|
T Consensus 78 l~v~d~~~~~~~~-~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (168)
T cd01887 78 ILVVAADDGVMPQ-TIEAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTG 151 (168)
T ss_pred EEEEECCCCccHH-HHHHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccC
Confidence 9999998754322 2222222222 467999999999987532 222222221 111 1134578999999886
No 147
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=1.1e-20 Score=131.59 Aligned_cols=147 Identities=22% Similarity=0.260 Sum_probs=90.2
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----------c
Q 030848 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------G 80 (170)
Q Consensus 11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~ 80 (170)
..+.....+|+++|.+|+|||||+|++.+.. ...........|..... +... ..+.+|||||.. .
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~--~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtpG~~~~~~~~~~~~~ 86 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRK--KLARTSKTPGRTQLINF--FEVN-DGFRLVDLPGYGYAKVSKEEKEK 86 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC--CcccccCCCCcceEEEE--EEeC-CcEEEEeCCCCccccCChhHHHH
Confidence 4455778999999999999999999997621 01111111222323322 2222 379999999942 1
Q ss_pred chhhHHHHhh---ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhCcc
Q 030848 81 LRSIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLK 153 (170)
Q Consensus 81 ~~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~~~ 153 (170)
+......+++ .++++++|+|++++-+.... ..+..+ .. .+.|+++++||+|+.+.... +++.+.++.
T Consensus 87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~-~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~- 160 (179)
T TIGR03598 87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWL-RE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK- 160 (179)
T ss_pred HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHH-HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh-
Confidence 2223334444 35799999999876554433 222222 22 46899999999999764333 333334431
Q ss_pred ccccceeEEEeeeccCC
Q 030848 154 KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 154 ~~~~~~~~~~~~Sa~~g 170 (170)
....++++++||++|
T Consensus 161 --~~~~~~v~~~Sa~~g 175 (179)
T TIGR03598 161 --DADDPSVQLFSSLKK 175 (179)
T ss_pred --ccCCCceEEEECCCC
Confidence 123458999999987
No 148
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=135.13 Aligned_cols=119 Identities=33% Similarity=0.486 Sum_probs=93.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec----CeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|+.|+|||||++++.. +.....+.+++...+...... ...+.+|||+|+++++..+..++..
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~ 77 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVG------DEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRG 77 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhc------CcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcC
Confidence 448999999999999999999987 555555656655544433322 4569999999999999999999999
Q ss_pred cCEEEEEEeCCCccc-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 92 AHAVVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
++++++|+|..+..+ .+....|...+..... ...|+++++||+|+....
T Consensus 78 ~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 78 ANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred CCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccch
Confidence 999999999999554 4555666656554432 578999999999998753
No 149
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=2.5e-20 Score=130.68 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=103.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC------------C--CCcccCCcceeEEEEE--ecCeEEEEEEcCCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------P--PDRIVPTVGLNIGRIE--VSNSKLVFWDLGGQ 78 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~ 78 (170)
++.++|+++|+.++|||||++++.......... . .....-+.......+. .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 467899999999999999999997643322110 0 0112345555566666 77889999999999
Q ss_pred CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC---CHHHHH-hHhCccc
Q 030848 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELA-RYLDLKK 154 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~---~~~~~~-~~~~~~~ 154 (170)
..+.......++.+|++|+|+|+.+.-.. ...+.+..+.. .+.|+++++||+|+.... ..+++. ..++...
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 99988888888999999999999876443 33344444433 477899999999998421 122222 1222223
Q ss_pred ccc-ceeEEEeeeccCC
Q 030848 155 LDE-RVCMFEAVSGYDG 170 (170)
Q Consensus 155 ~~~-~~~~~~~~Sa~~g 170 (170)
... ..+|++++||++|
T Consensus 156 ~~~~~~~~vi~~Sa~~g 172 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTG 172 (188)
T ss_dssp STTTSTEEEEEEBTTTT
T ss_pred cCccccceEEEEecCCC
Confidence 333 4789999999987
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=1.3e-20 Score=130.27 Aligned_cols=142 Identities=24% Similarity=0.280 Sum_probs=92.2
Q ss_pred EEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCc-------chhhHHHHhhccC
Q 030848 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG-------LRSIWEKYYEEAH 93 (170)
Q Consensus 22 vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 93 (170)
++|++|+|||||+|++.+...... .....|.......+... +..+.+|||||... +...+...++.+|
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA----NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc----CCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccC
Confidence 589999999999999987321111 11112223333345566 78899999999532 1212334568899
Q ss_pred EEEEEEeCCCc------ccHHHHHHHHHHHHcCCC------CCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeE
Q 030848 94 AVVFVIDAACP------SRFEDSKTALEKVLRNED------LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM 161 (170)
Q Consensus 94 ~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (170)
++++|+|+++. .++.+...+...+..... ..+.|+++++||+|+.......+..... .......+
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~ 153 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAE 153 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCC
Confidence 99999999988 466777667666654432 1478999999999997644433331111 11234567
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
++++||++|
T Consensus 154 ~~~~Sa~~~ 162 (176)
T cd01881 154 VVPISAKTE 162 (176)
T ss_pred EEEEehhhh
Confidence 999999875
No 151
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=2.7e-20 Score=141.10 Aligned_cols=145 Identities=19% Similarity=0.296 Sum_probs=92.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-h-------hhH
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-R-------SIW 85 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~-------~~~ 85 (170)
+++..+|+++|.+|+|||||+|++.+... . ...+....|.......+...+.++.+|||||..+. . ...
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~--~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKL--S-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCce--e-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHH
Confidence 45667999999999999999999976211 1 11122223333334456677889999999997432 1 111
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
...++.+|++|+|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...++.+.+... ....+++++
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~i 196 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPI 196 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEE
Confidence 234689999999999765 344443333333222 24567889999999754 344555554411 123579999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 197 SAktg 201 (339)
T PRK15494 197 SALSG 201 (339)
T ss_pred eccCc
Confidence 99986
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.85 E-value=5.2e-20 Score=124.75 Aligned_cols=133 Identities=24% Similarity=0.214 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh--------hHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYY 89 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 89 (170)
++|+++|++|+|||||++++.+....... .....+.......+...+..+.+|||||..+... ....++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS---DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc---CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999762211111 1112222333334556677899999999654422 123456
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+++|++++|+|++++.+......+.. ..+.|+++++||+|+.+.... . ......+++++||++
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-----~-----~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-----L-----SLLAGKPIIAISAKT 141 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-----c-----cccCCCceEEEECCC
Confidence 78999999999998777665443322 257899999999999764433 1 124456899999987
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 142 ~ 142 (157)
T cd04164 142 G 142 (157)
T ss_pred C
Confidence 6
No 153
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=2.3e-20 Score=132.31 Aligned_cols=122 Identities=30% Similarity=0.437 Sum_probs=89.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----ecCeEEEEEEcCCCCcchhhHHHHhhcc-C
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEA-H 93 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~-~ 93 (170)
+|+++|++|||||||++++.. +.....+. ++........ ..+..+.+||+||++.++..+..+++.+ +
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~------~~~~~t~~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~ 74 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTT------GKYRSTVT-SIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAK 74 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhc------CCCCCccC-cEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCC
Confidence 689999999999999999976 22222221 1122222222 2367899999999999998888889998 9
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccccCCHHHHH
Q 030848 94 AVVFVIDAACP-SRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSADELA 147 (170)
Q Consensus 94 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~~~~~~~~~ 147 (170)
++|+|+|+.+. .++..+..++..++.... .+..|+++++||+|+..+.+.+.+.
T Consensus 75 ~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~ 131 (203)
T cd04105 75 GIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIK 131 (203)
T ss_pred EEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHH
Confidence 99999999987 677777777776654321 2579999999999997655544333
No 154
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=1.9e-20 Score=146.61 Aligned_cols=146 Identities=23% Similarity=0.303 Sum_probs=97.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-------chhhHHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEKY 88 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~ 88 (170)
....|+++|.++||||||+|+|.+..+.+.... ..|.......+...+..+.+||+||..+ +...+..+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadyp----fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYP----FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccC----cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHH
Confidence 346899999999999999999987433332222 2344444556777888999999999421 22233445
Q ss_pred hhccCEEEEEEeCCCc----ccHHHHHHHHHHHHcCC----------CCCCCcEEEEeeCCCccccCCHH-HHHhHhCcc
Q 030848 89 YEEAHAVVFVIDAACP----SRFEDSKTALEKVLRNE----------DLQGAPLLILANKQDLPDAVSAD-ELARYLDLK 153 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~ii~v~nK~D~~~~~~~~-~~~~~~~~~ 153 (170)
+.+++++|+|+|+++. +.++....+..++..+. ...+.|+++++||+|+++..... .+.+.+.
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~-- 311 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE-- 311 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH--
Confidence 6789999999999753 34555544444443332 23468999999999997543222 2222332
Q ss_pred ccccceeEEEeeeccCC
Q 030848 154 KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 154 ~~~~~~~~~~~~Sa~~g 170 (170)
...++++++||++|
T Consensus 312 ---~~g~~Vf~ISA~tg 325 (500)
T PRK12296 312 ---ARGWPVFEVSAASR 325 (500)
T ss_pred ---HcCCeEEEEECCCC
Confidence 23568999999876
No 155
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=3.6e-21 Score=129.75 Aligned_cols=134 Identities=23% Similarity=0.319 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----c--chhhHHHHh--
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----G--LRSIWEKYY-- 89 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~--~~~~~~~~~-- 89 (170)
++|+++|.|++|||||+|++.+....+. .....|.......+...+..+.++|+||-- . -......++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~----n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVG----NWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEE----ESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceec----CCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 5899999999999999999988443222 233345566666788889999999999921 1 122223333
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC----CHHHHHhHhCccccccceeEEEee
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV----SADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
.+.|++++|+|+++. +.......++.. .+.|+++++||+|+..+. ..+.+.+.+ ++|++++
T Consensus 77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~ 141 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPV 141 (156)
T ss_dssp TSSSEEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEE
T ss_pred cCCCEEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEE
Confidence 689999999999863 444555666655 478999999999997743 344444444 4689999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 142 sa~~~ 146 (156)
T PF02421_consen 142 SARTG 146 (156)
T ss_dssp BTTTT
T ss_pred EeCCC
Confidence 99986
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=4.3e-20 Score=145.79 Aligned_cols=147 Identities=27% Similarity=0.235 Sum_probs=94.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----------cchhhH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLRSIW 85 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 85 (170)
..++|+++|.+++|||||+|++.+........ ....|.......+...+..+.+|||||.. .+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~---~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD---VAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC---CCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH
Confidence 35899999999999999999998632111111 11112222233456677889999999942 222222
Q ss_pred -HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848 86 -EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 86 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
..+++.+|++++|+|++++.+++... ++..+.. .+.|+++|+||+|+.+........+.+.........+++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 361 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVN 361 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEE
Confidence 23568999999999999988877653 3333332 47899999999999764332222222221111223468999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 362 ~SAk~g 367 (472)
T PRK03003 362 ISAKTG 367 (472)
T ss_pred EECCCC
Confidence 999987
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=2.8e-20 Score=130.87 Aligned_cols=148 Identities=20% Similarity=0.180 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc-cCCCCCCC--cccCCcceeEEEEEec--------------CeEEEEEEcCCCCc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPD--RIVPTVGLNIGRIEVS--------------NSKLVFWDLGGQPG 80 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~ 80 (170)
++|+++|++++|||||++++..... ........ ....|.+.....+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 5899999999999999999975210 00000000 1112333333333332 67899999999876
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH----HHHhHhCccc--
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD----ELARYLDLKK-- 154 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~----~~~~~~~~~~-- 154 (170)
+........+.+|++++|+|+++....+....+. +... .+.|+++++||+|+......+ ++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6554445567889999999998754433322221 1111 256999999999997543322 2222222110
Q ss_pred cccceeEEEeeeccCC
Q 030848 155 LDERVCMFEAVSGYDG 170 (170)
Q Consensus 155 ~~~~~~~~~~~Sa~~g 170 (170)
.....++++++||++|
T Consensus 156 ~~~~~~~vi~iSa~~g 171 (192)
T cd01889 156 TRFKNSPIIPVSAKPG 171 (192)
T ss_pred cCcCCCCEEEEeccCC
Confidence 1124678999999986
No 158
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=5.7e-20 Score=139.69 Aligned_cols=140 Identities=25% Similarity=0.319 Sum_probs=93.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCC-Cc--------chhhH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQ-PG--------LRSIW 85 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~-~~--------~~~~~ 85 (170)
..++|+++|.+|+|||||+|++.+..... .+...+|.+.....+.. .+..+.+|||||. +. +...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v----~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYA----ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceee----ccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH
Confidence 44899999999999999999998722111 12223444445555666 4578999999996 21 22222
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
..++++|++|+|+|++++.+.+....+.. ++......+.|+++|+||+|+.+... ...... ...+++++
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~-~L~~l~~~~~piIlV~NK~Dl~~~~~---v~~~~~------~~~~~i~i 332 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEK-VLEELGAEDIPQLLVYNKIDLLDEPR---IERLEE------GYPEAVFV 332 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHH-HHHHhccCCCCEEEEEEeecCCChHh---HHHHHh------CCCCEEEE
Confidence 24688999999999999887766544433 33333335789999999999965322 111111 12358999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 333 SAktg 337 (351)
T TIGR03156 333 SAKTG 337 (351)
T ss_pred EccCC
Confidence 99986
No 159
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=7.8e-20 Score=142.63 Aligned_cols=137 Identities=22% Similarity=0.286 Sum_probs=93.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC-CcceeEEEEEecCeEEEEEEcCCCCcchhh--------
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP-TVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-------- 84 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------- 84 (170)
-+..++|+++|++|+|||||+|++.+...... ..+.. |.......+.+.+..+.+|||||..+....
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv----s~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~ 275 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIV----SDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEK 275 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCccc----CCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHH
Confidence 34668999999999999999999986211111 11211 222333456677889999999997654332
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
...+++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+.+. ..+ +..+ ....++++
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~---~~~~-----~~~~~~~~ 340 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLE---FFVS-----SKVLNSSN 340 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chh---hhhh-----hcCCceEE
Confidence 23567899999999999988876654 4444422 46799999999999654 221 1122 22346889
Q ss_pred eeccC
Q 030848 165 VSGYD 169 (170)
Q Consensus 165 ~Sa~~ 169 (170)
+||++
T Consensus 341 vSak~ 345 (442)
T TIGR00450 341 LSAKQ 345 (442)
T ss_pred EEEec
Confidence 99986
No 160
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=1.6e-19 Score=124.17 Aligned_cols=146 Identities=22% Similarity=0.166 Sum_probs=91.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch-------h----hH
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------S----IW 85 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~----~~ 85 (170)
.++|+++|.+|+|||||++++.+........ ....+.......+...+..+.+|||||..... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD---IAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC---CCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHH
Confidence 5789999999999999999997622111111 11112222223345566779999999954321 0 11
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEE
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
...++.+|++++|+|++++.+.... ........ .+.|+++++||+|+.+. ...++..+.++.........+++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV 153 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence 2345789999999999988775543 22222222 36899999999999765 34444444444221112346899
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||++|
T Consensus 154 ~~Sa~~~ 160 (174)
T cd01895 154 FISALTG 160 (174)
T ss_pred EEeccCC
Confidence 9999976
No 161
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.84 E-value=3.4e-20 Score=126.06 Aligned_cols=133 Identities=21% Similarity=0.239 Sum_probs=86.5
Q ss_pred EEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh------hHHHHhh--ccC
Q 030848 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYYE--EAH 93 (170)
Q Consensus 22 vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~~ 93 (170)
++|.+|+|||||++++.+... ........+.......+...+..+.+|||||++.+.. ....++. .+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ----KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc----cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence 589999999999999976211 1111112233333445666678899999999776543 3445554 899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH-HHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD-ELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++... ..++..+.. .+.|+++++||+|+.+..... +..+... ....+++++||++|
T Consensus 77 ~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~iSa~~~ 142 (158)
T cd01879 77 LIVNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSE-----LLGVPVVPTSARKG 142 (158)
T ss_pred EEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHH-----hhCCCeEEEEccCC
Confidence 99999999876432 233333332 368999999999997643222 2222222 23468999999876
No 162
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=4.7e-20 Score=144.01 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=101.5
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CCC-----------CC--cccCCcceeEEEEEe
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-----------PD--RIVPTVGLNIGRIEV 65 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~~-----------~~--~~~~~~~~~~~~~~~ 65 (170)
..++.++|+++|++++|||||+++|........ +.. .. ...-|.......++.
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 357889999999999999999999964322211 100 00 122355555556777
Q ss_pred cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---
Q 030848 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--- 142 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--- 142 (170)
++..+.+|||||++.+.......++.+|++|+|+|++++............+.... ...|+++++||+|+.+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHH
Confidence 88899999999998886655556789999999999987322211111122222221 2357999999999975211
Q ss_pred ---HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 143 ---ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.+++.+.+...++....++++++||++|
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g 190 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEG 190 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccC
Confidence 2344444443344344578999999986
No 163
>PRK04213 GTP-binding protein; Provisional
Probab=99.84 E-value=6.8e-21 Score=134.77 Aligned_cols=143 Identities=22% Similarity=0.277 Sum_probs=83.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC-----------CCcchhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSI 84 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~ 84 (170)
..++|+++|.+|+|||||+|++.+. .......+.+......+... .+.+||||| ++.+...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~------~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGK------KVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC------CCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 5689999999999999999999762 11122222322222233333 699999999 3455555
Q ss_pred HHHHhh----ccCEEEEEEeCCCcccH-H---------HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHHHHHh
Q 030848 85 WEKYYE----EAHAVVFVIDAACPSRF-E---------DSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELAR 148 (170)
Q Consensus 85 ~~~~~~----~~~~~i~v~d~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~~~~~ 148 (170)
+..+++ .++++++|+|.++.... + .....+..+ . ..+.|+++++||+|+.+.. ..+++.+
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 155 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL-R---ELGIPPIVAVNKMDKIKNRDEVLDEIAE 155 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH-H---HcCCCeEEEEECccccCcHHHHHHHHHH
Confidence 555543 45788889887653211 0 011112222 2 1478999999999996543 2223333
Q ss_pred HhCcc-ccccceeEEEeeeccCC
Q 030848 149 YLDLK-KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 149 ~~~~~-~~~~~~~~~~~~Sa~~g 170 (170)
.+... .......+++++||++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g 178 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG 178 (201)
T ss_pred HhcCCccccccCCcEEEEecccC
Confidence 33210 01111236899999986
No 164
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=9.3e-20 Score=134.53 Aligned_cols=139 Identities=22% Similarity=0.202 Sum_probs=85.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEecCeEEEEEEcCCCCcc--------hhhHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSNSKLVFWDLGGQPGL--------RSIWEKYY 89 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~ 89 (170)
+|+++|.+|+|||||+|++.+....... ....|+.... ......+.++.+|||||.... ......++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs----~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS----PKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC----CCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH
Confidence 6899999999999999999873211111 1111222111 123344567999999995432 11234557
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+.+|++++|+|+++..+.+ ..+...+ .. .+.|+++++||+|+.+.....+....+.. .....+++++||++
T Consensus 78 ~~aDvvl~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI---LEDFKDIVPISALT 148 (270)
T ss_pred hhCCEEEEEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh---hcCCCceEEEecCC
Confidence 8999999999999876654 2222222 22 46899999999999643222222222211 11223799999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 149 g 149 (270)
T TIGR00436 149 G 149 (270)
T ss_pred C
Confidence 6
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=1.1e-19 Score=140.54 Aligned_cols=142 Identities=25% Similarity=0.367 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCc-------chhhHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG-------LRSIWEKYY 89 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~ 89 (170)
..|+++|.++||||||++++.+..+.+.....++..| +...+... +..+.+||+||..+ +...+...+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~P----nlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVP----NLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceece----EEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH
Confidence 4899999999999999999987544443333333333 33345555 67899999999532 223334445
Q ss_pred hccCEEEEEEeCCCc---ccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848 90 EEAHAVVFVIDAACP---SRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
.+++++++|+|+++. .+++....+..++..+.. ..+.|+++|+||+|+... .+.+.+..+. ...+++++
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~-----l~~~i~~i 307 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEK-----LGPKVFPI 307 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHH-----hCCcEEEE
Confidence 679999999999865 566776666666655422 246899999999998532 2223222221 11579999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 308 SA~tg 312 (424)
T PRK12297 308 SALTG 312 (424)
T ss_pred eCCCC
Confidence 99986
No 166
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=9.4e-20 Score=142.56 Aligned_cols=147 Identities=23% Similarity=0.181 Sum_probs=95.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh-----------h
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS-----------I 84 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~ 84 (170)
..++++++|.+++|||||+|++.+........ ....|.......+...+..+.+|||||...... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSD---IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCC---CCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 34899999999999999999998632111111 111122222334555677899999999643321 1
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-ccCCHHHHHhHhCccccccceeEEE
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
...+++.+|++|+|+|++++.+.+... .+..+.. .+.|+++++||+|+. +....++..+.++........++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceE
Confidence 124578999999999999887765542 2333322 468999999999997 3333444444444222223457999
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||++|
T Consensus 323 ~~SA~~g 329 (429)
T TIGR03594 323 FISALTG 329 (429)
T ss_pred EEeCCCC
Confidence 9999987
No 167
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=2.4e-20 Score=145.62 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=101.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------C-----------CCCC--cccCCcceeEEEEEec
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------G-----------LPPD--RIVPTVGLNIGRIEVS 66 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~-----------~~~~--~~~~~~~~~~~~~~~~ 66 (170)
.++.++|+++|+.++|||||++++........ + .... ....|.+.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 56889999999999999999999964322111 0 0001 1123444445566777
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccCC---
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVS--- 142 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--- 142 (170)
+..+.+|||||++.+.......+..+|++++|+|+++..+..... .....+.... ...|+++++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 889999999999988766666678999999999999875431111 1111122222 2357999999999974211
Q ss_pred ---HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 143 ---ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
..++.+.++..+.....++++++||++|
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g 192 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNG 192 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeecccc
Confidence 2344444443444445689999999986
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.84 E-value=1.2e-19 Score=142.16 Aligned_cols=135 Identities=24% Similarity=0.298 Sum_probs=93.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh--------HH
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WE 86 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 86 (170)
+..++|+++|.+|+|||||+|++.+...... .+....|.......+...+..+.+|||||.++.... ..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v---~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIV---TDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCccc---CCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 3568999999999999999999976211111 111122333334456677889999999997654322 22
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.+++.+|++++|+|++++.+++....+. . ..+.|+++|+||+|+.+..... . ....+++++|
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~-~------~~~~piiiV~NK~DL~~~~~~~------~-----~~~~~~i~iS 351 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILE-E------LKDKPVIVVLNKADLTGEIDLE------E-----ENGKPVIRIS 351 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHH-h------cCCCCcEEEEEhhhccccchhh------h-----ccCCceEEEE
Confidence 3578999999999999887776443322 2 2578999999999997543222 1 2345789999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 352 Aktg 355 (449)
T PRK05291 352 AKTG 355 (449)
T ss_pred eeCC
Confidence 9986
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=5.3e-20 Score=130.52 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe--------------------------------
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-------------------------------- 65 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 65 (170)
++|+++|+.|+|||||+.++.+...+..... .....++......+.+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEE-LERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCee-EEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 4789999999999999999965311111000 0011111111111111
Q ss_pred -cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH
Q 030848 66 -SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD 144 (170)
Q Consensus 66 -~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~ 144 (170)
....+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+.....
T Consensus 80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHH
Confidence 1267999999999988887777788999999999998742211222222222111 235799999999997633322
Q ss_pred ----HHHhHhCccccccceeEEEeeeccCC
Q 030848 145 ----ELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 145 ----~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++.+.++. .....++++++||++|
T Consensus 157 ~~~~~i~~~~~~--~~~~~~~i~~vSA~~g 184 (203)
T cd01888 157 ENYEQIKKFVKG--TIAENAPIIPISAQLK 184 (203)
T ss_pred HHHHHHHHHHhc--cccCCCcEEEEeCCCC
Confidence 22222221 1123568999999986
No 170
>PTZ00099 rab6; Provisional
Probab=99.83 E-value=7.3e-20 Score=126.95 Aligned_cols=118 Identities=24% Similarity=0.391 Sum_probs=94.0
Q ss_pred CCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC
Q 030848 47 LPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122 (170)
Q Consensus 47 ~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 122 (170)
.+.+.+.+|++..+.. +. .....+.||||||++.+...+..+++.+|++|+|||++++.+++.+..|+..+.....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~ 83 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG 83 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 3445677888766642 22 3457899999999999999999999999999999999999999999999988876543
Q ss_pred CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 123 LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 123 ~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+..|+++|+||+|+.+ ....++..+..+ ...+.|++|||++|
T Consensus 84 -~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g 127 (176)
T PTZ00099 84 -KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAG 127 (176)
T ss_pred -CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence 5789999999999964 455666655554 34567999999987
No 171
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=3.2e-19 Score=120.63 Aligned_cols=150 Identities=21% Similarity=0.364 Sum_probs=115.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCC------CCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCcchhhHH
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE------GLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWE 86 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~ 86 (170)
.....||+++|+.++||||++..++....... .........|+...+..+...+ ..+.+++||||+++..+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 45678999999999999999999976432111 1111233456777777777766 8899999999999999999
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.+.+.+.++++++|.+.+..+ +....+..+ ... ...|+++++||.|+++..+++.+.+.+.... ..++.++.+
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeee
Confidence 999999999999999999888 333333333 322 1299999999999999999999999998332 367888888
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|..|
T Consensus 160 a~e~ 163 (187)
T COG2229 160 ATEG 163 (187)
T ss_pred cccc
Confidence 8753
No 172
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=3e-19 Score=127.09 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=90.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCC-------------------------CCCC--cccCCcceeEEEEEecCeEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPPD--RIVPTVGLNIGRIEVSNSKLV 71 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~ 71 (170)
||+++|++++|||||+++++........ .... ....|.......+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999653322210 0000 011233333445666788999
Q ss_pred EEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC--HH----H
Q 030848 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--AD----E 145 (170)
Q Consensus 72 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--~~----~ 145 (170)
+|||||++++.......++.+|++|+|+|++++...+ ....+ .+.... ...++++++||+|+.+... .+ +
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999887666666779999999999998763322 22222 222221 2346888999999975321 11 2
Q ss_pred HHhHhCccccccceeEEEeeeccCC
Q 030848 146 LARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+.+.++..+ ....+++++||++|
T Consensus 157 ~~~~~~~~~--~~~~~ii~iSA~~g 179 (208)
T cd04166 157 YLAFAAKLG--IEDITFIPISALDG 179 (208)
T ss_pred HHHHHHHcC--CCCceEEEEeCCCC
Confidence 222222111 22467999999986
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.82 E-value=6.9e-19 Score=141.19 Aligned_cols=145 Identities=23% Similarity=0.281 Sum_probs=97.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
...+|+++|++++|||||++++.+ .......... .|.......+...+. .+.+|||||++.+..++...++.+|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~--~~v~~~e~~G--IT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRK--TKVAQGEAGG--ITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--CCcccccCCc--eeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCE
Confidence 447899999999999999999976 2222221111 223333334444444 89999999999999999988999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc----cceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g 170 (170)
+++|+|+++....+. .+.+... ...+.|+++++||+|+++. ..++..+.++..+.. ....+++++||++|
T Consensus 162 aILVVda~dgv~~qT-~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 162 VVLVVAADDGVMPQT-IEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred EEEEEECCCCCCHhH-HHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 999999987533222 2222222 1247899999999999753 334444444322221 12368999999987
No 174
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.82 E-value=2.2e-19 Score=128.70 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=95.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCC-------------------------CCCCC--cccCCcceeEEEEEecCeEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPD--RIVPTVGLNIGRIEVSNSKLV 71 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~-------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~ 71 (170)
+|+++|+.++|||||+.++........ +.... ...-|.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999954321111 00111 111244444456777889999
Q ss_pred EEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc------HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----C
Q 030848 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR------FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----V 141 (170)
Q Consensus 72 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~----~ 141 (170)
+|||||+..+...+...++.+|++|+|+|+++... .......+... ... ...|+++++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 99999998777766777789999999999987421 11122222222 211 23689999999999742 1
Q ss_pred CHHHHHh----HhCccccccceeEEEeeeccCC
Q 030848 142 SADELAR----YLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 142 ~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
..+++.+ .++........++++++||++|
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg 190 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTG 190 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcC
Confidence 1223333 3333333445689999999987
No 175
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=6.7e-19 Score=123.91 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=97.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCC----------CCCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 83 (170)
+.++|+++|..++|||||++++........ +.... ...-|.......+...+..+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 358999999999999999999975321110 00011 111233333334555678899999999988877
Q ss_pred hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-H----HHHHhHhCcccccc
Q 030848 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-A----DELARYLDLKKLDE 157 (170)
Q Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-~----~~~~~~~~~~~~~~ 157 (170)
.....+..+|++++|+|++..-. ......+..+.. .+.| +++++||+|+..... . +++.+.+...+...
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 77777899999999999986532 222333333322 2444 889999999964221 1 23444444344445
Q ss_pred ceeEEEeeeccCC
Q 030848 158 RVCMFEAVSGYDG 170 (170)
Q Consensus 158 ~~~~~~~~Sa~~g 170 (170)
..++++++||++|
T Consensus 156 ~~v~iipiSa~~g 168 (195)
T cd01884 156 DNTPIVRGSALKA 168 (195)
T ss_pred cCCeEEEeeCccc
Confidence 5789999999986
No 176
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=7e-19 Score=138.94 Aligned_cols=140 Identities=26% Similarity=0.253 Sum_probs=89.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc--------chhhHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEK 87 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 87 (170)
...+|+++|.+|+|||||+|++.+....... .....|.......+...+..+.+|||||.+. +......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~---~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE---DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccccc---CCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 3468999999999999999999762111111 1111222333334556778899999999653 3334556
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeec
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+++.+|++|+|+|+++..+... ..+. ..+.. .+.|+++|+||+|+..... +..+... .++ . ..+++||
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~-~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~-~g~---~-~~~~iSA 181 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVA-RVLRR---SGKPVILAANKVDDERGEA--DAAALWS-LGL---G-EPHPVSA 181 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHH-HHHHH---cCCCEEEEEECccCCccch--hhHHHHh-cCC---C-CeEEEEc
Confidence 7889999999999998766543 2222 22222 4789999999999865322 2222222 122 1 2368999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 182 ~~g 184 (472)
T PRK03003 182 LHG 184 (472)
T ss_pred CCC
Confidence 986
No 177
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=4.6e-19 Score=120.20 Aligned_cols=135 Identities=23% Similarity=0.216 Sum_probs=85.2
Q ss_pred EEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh--------hHHHHhhcc
Q 030848 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYYEEA 92 (170)
Q Consensus 21 ~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~ 92 (170)
+++|.+|+|||||++++.+........ ....+...........+..+.+|||||...... .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED---TPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC---CCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999997631111111 111122233334556678899999999776433 334567889
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++++|+|+++..+.... .+...... .+.|+++++||+|+.+.... .+.+.... ..+++++||++|
T Consensus 78 d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~~----~~~~~~~Sa~~~ 143 (157)
T cd01894 78 DVILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSLG----FGEPIPISAEHG 143 (157)
T ss_pred CEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhcC----CCCeEEEecccC
Confidence 999999999876444332 22222222 35899999999999764332 22222111 125789999876
No 178
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.81 E-value=1.9e-18 Score=139.23 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=95.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCC-CCCccc----------CCcceeEEEEEe-----cCeEEEEEEcCCCCc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIV----------PTVGLNIGRIEV-----SNSKLVFWDLGGQPG 80 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~-----~~~~~~i~D~~G~~~ 80 (170)
.-+++++|+.++|||||++++.......... ....+. .|+......+.+ +...+.+|||||++.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4579999999999999999997643211110 111111 122221122222 236899999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH---HHHHhHhCcccccc
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLDE 157 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~---~~~~~~~~~~~~~~ 157 (170)
+...+..+++.+|++|+|+|+++..+.+....|+... . .+.|+++++||+|+.+.... +++.+.+. .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg-----~ 152 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIG-----L 152 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhC-----C
Confidence 9988999999999999999999876666554444332 2 36789999999999754322 22222222 2
Q ss_pred ceeEEEeeeccCC
Q 030848 158 RVCMFEAVSGYDG 170 (170)
Q Consensus 158 ~~~~~~~~Sa~~g 170 (170)
...+++++||++|
T Consensus 153 ~~~~vi~vSAktG 165 (595)
T TIGR01393 153 DASEAILASAKTG 165 (595)
T ss_pred CcceEEEeeccCC
Confidence 2235899999987
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=5.5e-19 Score=138.50 Aligned_cols=147 Identities=22% Similarity=0.170 Sum_probs=95.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc----------hh-h
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------RS-I 84 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~-~ 84 (170)
..++|+++|.+|+|||||+|++.+......... ...|.......+...+..+.+|||||.... .. .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~---~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDI---AGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCC---CCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 468999999999999999999976221111111 111222222234567788999999995321 11 1
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
...+++.+|++|+|+|++++.+.+.. ..+..+.. .+.|+++++||+|+.++...++..+.+.........+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEE
Confidence 12467899999999999988776543 22233322 46899999999999754444555554442222345679999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 324 ~SA~~~ 329 (435)
T PRK00093 324 ISALTG 329 (435)
T ss_pred EeCCCC
Confidence 999986
No 180
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.81 E-value=8.6e-21 Score=127.56 Aligned_cols=140 Identities=21% Similarity=0.359 Sum_probs=113.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
.-+|.+++|..++||||++.++.. +-+...+..+++..+. .+..++....+||++|++++......|++.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCk------gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrg 92 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRG 92 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhc------cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcc
Confidence 348999999999999999999976 5555566666666543 345567889999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeecc
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
+.+.++||+.++..+|+...+|...+.... ..+|.++|-||+|+.+. ...++.+..++ .....++.+|++
T Consensus 93 aqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak-----~l~~RlyRtSvk 164 (246)
T KOG4252|consen 93 AQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAK-----KLHKRLYRTSVK 164 (246)
T ss_pred ccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHH-----Hhhhhhhhhhhh
Confidence 999999999999999999999999997765 58999999999999873 34555555555 233346666655
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.81 E-value=1.4e-18 Score=141.67 Aligned_cols=148 Identities=22% Similarity=0.283 Sum_probs=96.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
....+|+++|+.++|||||++++... .............++.....+.. .+..+.+|||||++.+..++..+++.+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~--~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKT--QIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhc--cCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 35578999999999999999999762 11111111122222222212222 357899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc----ccceeEEEeeecc
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL----DERVCMFEAVSGY 168 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~ 168 (170)
|++|+|+|+++....+. .+.+..+ ...+.|+++++||+|+++.. .+++.+.+..... ....++++++||+
T Consensus 320 DiaILVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 320 DIAILIIAADDGVKPQT-IEAINYI----QAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred CEEEEEEECcCCCChhh-HHHHHHH----HhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 99999999987533222 2222222 12468999999999997632 3333333321111 1124789999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 394 tG 395 (742)
T CHL00189 394 QG 395 (742)
T ss_pred CC
Confidence 87
No 182
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.81 E-value=1.8e-18 Score=118.03 Aligned_cols=143 Identities=21% Similarity=0.230 Sum_probs=88.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh--------hHHHH
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKY 88 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~ 88 (170)
..+|+++|++|+|||||+|++.+......... ...+...........+..+.+|||||...... .....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK---PQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCC---CCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 57899999999999999999976211111110 11111111223344567899999999654322 23345
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeec
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+..+|++++|+|++++.+ ....++...... .+.|+++++||+|+.. .....+..+.++.. ....+++++|+
T Consensus 80 ~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~ 151 (168)
T cd04163 80 LKDVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISA 151 (168)
T ss_pred HHhCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEe
Confidence 688999999999998722 122222222221 2679999999999973 44445555555421 22457899999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 152 ~~~ 154 (168)
T cd04163 152 LKG 154 (168)
T ss_pred ccC
Confidence 875
No 183
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=9.4e-19 Score=134.55 Aligned_cols=147 Identities=24% Similarity=0.342 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCc-------chhhHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY 89 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~ 89 (170)
..|++||.|+||||||+|+|.+....+.....++..+. ...+...+ ..+.++||||..+ +...+...+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~----~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPN----LGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcE----EEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence 37999999999999999999875443333333333333 33355554 4699999999432 222334467
Q ss_pred hccCEEEEEEeCC---CcccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848 90 EEAHAVVFVIDAA---CPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 90 ~~~~~~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
.+++++++|+|++ +...++....+..++.... ...+.|+++|+||+|+.+.....+..+.+... . ....+++++
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~I 313 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLI 313 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEE
Confidence 8999999999988 4456666666766665432 12468999999999997643333333322211 0 112368999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 314 SA~tg 318 (390)
T PRK12298 314 SAASG 318 (390)
T ss_pred ECCCC
Confidence 99875
No 184
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.81 E-value=5.9e-19 Score=120.46 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=81.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----cchhhHHHHhhccCE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----GLRSIWEKYYEEAHA 94 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~~~ 94 (170)
+|+++|.+|+|||||+|++.+... . ..++... .+... .+|||||.. +........++.+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~------~--~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT------L--ARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc------c--CccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 799999999999999999876211 0 1122222 22221 279999962 222222334689999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+|+++..++.. .+...+ . .+.|+++++||+|+++ ...+.+.+.++.... ..|++++||++|
T Consensus 68 il~v~d~~~~~s~~~--~~~~~~----~-~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~~---~~p~~~~Sa~~g 132 (158)
T PRK15467 68 LIYVHGANDPESRLP--AGLLDI----G-VSKRQIAVISKTDMPD-ADVAATRKLLLETGF---EEPIFELNSHDP 132 (158)
T ss_pred EEEEEeCCCcccccC--HHHHhc----c-CCCCeEEEEEccccCc-ccHHHHHHHHHHcCC---CCCEEEEECCCc
Confidence 999999998766422 222222 1 3578999999999965 344555555542222 258999999986
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.80 E-value=2.2e-18 Score=141.53 Aligned_cols=146 Identities=24% Similarity=0.306 Sum_probs=98.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|+.++|||||+++|.. ..+....... .|.......+...+..+.+|||||++.+..++...++.+|+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~--~~v~~~e~~G--IT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRK--TNVAAGEAGG--ITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh--CCccccccCc--eeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCE
Confidence 3557899999999999999999975 2222111111 23333334566667889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc----cceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g 170 (170)
+|+|+|+++...-+. ...+... ...+.|+++++||+|+++. ..+.....+...... ...++++++||++|
T Consensus 364 aILVVdAddGv~~qT-~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 364 VVLVVAADDGVMPQT-IEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEEECCCCCCHhH-HHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 999999987532222 2222222 1246899999999999753 223333222211111 12478999999987
No 186
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=3.3e-19 Score=129.36 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=93.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC--------CCcchhhHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--------QPGLRSIWEK 87 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~ 87 (170)
+.--++++|.|++|||||+|++.+..-......++.....+.. -++..+.++.++|||| .+.+......
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~G---I~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG---IVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeE---EEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 4456899999999999999999874443333333322222211 2455688999999999 2223334445
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEEeee
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.+.++|++++|+|++.+..- ..++....+. ..+.|+++++||+|...... .....+.+.. ......++++|
T Consensus 82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk---~~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiS 153 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP--GDEFILEQLK---KTKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPIS 153 (298)
T ss_pred HhccCcEEEEEEeccccCCc--cHHHHHHHHh---hcCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEee
Confidence 56899999999999875332 2222222222 14679999999999876555 3444444442 23344899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 154 A~~g 157 (298)
T COG1159 154 ALKG 157 (298)
T ss_pred cccc
Confidence 9986
No 187
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.80 E-value=1.4e-18 Score=122.27 Aligned_cols=147 Identities=21% Similarity=0.204 Sum_probs=85.7
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----------cch
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLR 82 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~ 82 (170)
+....++|+++|.+|+|||||++++.+.. ...........|..... .. .+.++.+|||||.. .+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~--~~~~~~~~~~~t~~~~~--~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRK--NLARTSKTPGRTQLINF--FE-VNDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCC--CcccccCCCCceeEEEE--Ee-cCCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 34466899999999999999999998621 00111111111222221 22 24789999999942 223
Q ss_pred hhHHHHhhc---cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccce
Q 030848 83 SIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 159 (170)
Q Consensus 83 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
.....+++. .+++++|+|.+++.+... ..+...+.. .+.|+++++||+|+.+....++..+.++.. .....
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~ 168 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGD 168 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcC
Confidence 334445544 467888899887644332 122222221 467899999999997644333333222211 11225
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
.+++++||++|
T Consensus 169 ~~~~~~Sa~~~ 179 (196)
T PRK00454 169 DEVILFSSLKK 179 (196)
T ss_pred CceEEEEcCCC
Confidence 68899999876
No 188
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.80 E-value=1.7e-18 Score=116.99 Aligned_cols=141 Identities=26% Similarity=0.229 Sum_probs=91.3
Q ss_pred EEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCcch-------hhHHHHhhccC
Q 030848 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLR-------SIWEKYYEEAH 93 (170)
Q Consensus 22 vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~-------~~~~~~~~~~~ 93 (170)
++|++|+|||||++++.+....... .....+........... ...+.+||+||..... .....+++.+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS---PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC---CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 5899999999999999763221111 11111222222223333 6789999999966543 23445678999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++....... +..... ..+.|+++++||+|+.......+..+...........++++++||++|
T Consensus 78 ~il~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 149 (163)
T cd00880 78 LILFVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTG 149 (163)
T ss_pred EEEEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeecc
Confidence 999999999887765544 222222 257899999999999876555554322222223456788999999875
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=5.1e-18 Score=133.04 Aligned_cols=138 Identities=26% Similarity=0.340 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc--------chhhHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYY 89 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 89 (170)
.+|+++|.+|+|||||+|++.+....... .....|...........+..+.+|||||.+. +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~---~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA---DTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC---CCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 57999999999999999999762211111 1111233333445667778999999999876 233345567
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+.+|++|+|+|++++.+.... .+...+.. .+.|+++++||+|+.+. .....+... .+. ..++++||++
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~--~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~-lg~----~~~~~iSa~~ 146 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADE--EIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYS-LGL----GEPYPISAEH 146 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHh-cCC----CCCEEEEeeC
Confidence 899999999999876443221 12222222 36899999999997542 122222222 111 1378999987
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 147 g 147 (435)
T PRK00093 147 G 147 (435)
T ss_pred C
Confidence 6
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=2.8e-18 Score=141.25 Aligned_cols=146 Identities=22% Similarity=0.225 Sum_probs=94.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc----------chhhH-
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----------LRSIW- 85 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~- 85 (170)
.++|+++|.+|+|||||+|++.+........ ....|.......+...+..+.+|||||... +....
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~---~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVND---LAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCC---CCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4799999999999999999998732111111 111122222234566778899999999431 11111
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
...++.+|++++|+|+++..+.+... ++..+.. .+.|+++|+||+|+.+....+...+.+..........+++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~i 601 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNL 601 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEE
Confidence 23468899999999999887776654 3333332 468999999999997654444444433322112334678999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 602 SAktg 606 (712)
T PRK09518 602 SAKTG 606 (712)
T ss_pred ECCCC
Confidence 99987
No 191
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.79 E-value=1.5e-18 Score=139.60 Aligned_cols=144 Identities=21% Similarity=0.204 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcc--cCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
+.|+++|++++|||||++++.+... +...++. ..|+...+..+...+..+.+||+||++.+.......+..+|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~---d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAA---DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccC---cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 4789999999999999999976221 1122222 2344444555677778999999999999988888888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCCHH----HHHhHhCccccccceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSAD----ELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|+++....+ ..+.+. +... .+.| +++++||+|+.+....+ ++.+.+..... ...++++++||++|
T Consensus 78 ILVVDa~~G~~~q-T~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG 151 (581)
T TIGR00475 78 LLVVDADEGVMTQ-TGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTG 151 (581)
T ss_pred EEEEECCCCCcHH-HHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCC
Confidence 9999998743211 222222 2222 2456 99999999997644322 23333321111 12578999999986
No 192
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=2.7e-18 Score=128.11 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=87.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecCeEEEEEEcCCCCcc--------hhhHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSNSKLVFWDLGGQPGL--------RSIWE 86 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~--------~~~~~ 86 (170)
+.-.|+++|.+|||||||+|++.+........ ...|+..... .....+.++.+|||||.... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~----~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP----KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC----CCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 34569999999999999999997622111111 1112222221 22334578999999995432 22333
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
..+.++|++++|+|+++..+ ....++...+. ..+.|+++|+||+|+.. .....+..+.+.. .....+++++
T Consensus 80 ~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~i 151 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPI 151 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEe
Confidence 45688999999999987322 22222222222 24689999999999973 3333333333331 1234679999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 152 SA~~~ 156 (292)
T PRK00089 152 SALKG 156 (292)
T ss_pred cCCCC
Confidence 99876
No 193
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=5.4e-18 Score=136.33 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=100.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCC--------CC----cccCCcceeEEEEEecCeEEEEEEcCCCCcchhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--------PD----RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 84 (170)
..+|+++|+.++|||||++++........... .. ....++......+.+++..+.+|||||+..+...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 45899999999999999999975322211110 00 1112233333356677899999999999999998
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCcccc--ccce
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKL--DERV 159 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~ 159 (170)
+..+++.+|++|+|+|+.+.... .....+..... .+.|.++++||+|+++... .+++.+.+..... ....
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 99999999999999999875432 23334444333 3678899999999976433 2344444321111 2245
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
+|++++||++|
T Consensus 160 ~PVi~~SA~~G 170 (607)
T PRK10218 160 FPIVYASALNG 170 (607)
T ss_pred CCEEEeEhhcC
Confidence 78999999986
No 194
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=7.8e-18 Score=130.83 Aligned_cols=140 Identities=23% Similarity=0.262 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCc--chhhHH------HH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPG--LRSIWE------KY 88 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~--~~~~~~------~~ 88 (170)
.+|+++|.+|+|||||+|++.+...... +....|.+.....+...+. .+.+|||||... ....+. ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~----~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~ 273 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA----DQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQE 273 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec----cCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 5899999999999999999976221111 1222334444445555553 789999999632 122222 23
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeE-EEeeec
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM-FEAVSG 167 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 167 (170)
++.+|++|+|+|++++.+.+....+.. ++......+.|+++|+||+|+.+..... . .... ...+ ++++||
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~~~-~-~~~~------~~~~~~v~ISA 344 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFEPR-I-DRDE------ENKPIRVWLSA 344 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchhHH-H-HHHh------cCCCceEEEeC
Confidence 578999999999999877766543333 2222233578999999999996532111 1 1111 1112 578999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 345 ktG 347 (426)
T PRK11058 345 QTG 347 (426)
T ss_pred CCC
Confidence 986
No 195
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=4.7e-18 Score=136.69 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCC----------C--CcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 86 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 86 (170)
+|+++|+.++|||||++++........... . .....|+......+.+++..+.+|||||++.+...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999975322211110 0 0112344444556788899999999999999998889
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCcccc--ccceeE
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKL--DERVCM 161 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~ 161 (170)
.+++.+|++++|+|+.+.. ......++..... .+.|+++++||+|+++... .+++.+.+..... +...+|
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 9999999999999998643 3445555555544 3678999999999975322 2334444432222 123568
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
++++||++|
T Consensus 158 vl~~SA~~g 166 (594)
T TIGR01394 158 IVYASGRAG 166 (594)
T ss_pred EEechhhcC
Confidence 999999876
No 196
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=2.3e-18 Score=133.62 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=92.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--------------------EEe------cC
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--------------------IEV------SN 67 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~------~~ 67 (170)
+++.++|+++|+.++|||||++++.+...+...... ...-|+...+.. .+. ..
T Consensus 1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~-~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T TIGR03680 1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL-KRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELL 79 (406)
T ss_pred CCceEEEEEEccCCCCHHHHHHHHhCeecccCHhHH-HcCceeEecccccccccccccCccccccccccccccccccccc
Confidence 367899999999999999999999652111100000 000111111000 011 24
Q ss_pred eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---- 143 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~---- 143 (170)
..+.+||+||++.+...+......+|++++|+|++++.......+.+..+ ... ...|+++++||+|+.+....
T Consensus 80 ~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~ 156 (406)
T TIGR03680 80 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENY 156 (406)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHH
Confidence 67999999999999888888888999999999999653112222222222 221 23578999999999764332
Q ss_pred HHHHhHhCccccccceeEEEeeeccCC
Q 030848 144 DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++.+.+... ....++++++||++|
T Consensus 157 ~~i~~~l~~~--~~~~~~ii~vSA~~g 181 (406)
T TIGR03680 157 EEIKEFVKGT--VAENAPIIPVSALHN 181 (406)
T ss_pred HHHHhhhhhc--ccCCCeEEEEECCCC
Confidence 2333322211 123578999999986
No 197
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.78 E-value=3.4e-18 Score=124.67 Aligned_cols=144 Identities=27% Similarity=0.408 Sum_probs=112.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCC-------CCcchhhHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGG-------QPGLRSIWEK 87 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G-------~~~~~~~~~~ 87 (170)
....+.+||.|++|||||++++..+.+.+..+.+++..|.++. +.+.+ .++.+-|.|| +.-+...+..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~----v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr 270 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGT----VNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR 270 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccce----eeccccceeEeccCccccccccccCcccHHHHH
Confidence 4457889999999999999999999899999999999999884 33333 3399999999 2334445666
Q ss_pred HhhccCEEEEEEeCCCc---ccHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccc-CCH-HHHHhHhCccccccceeE
Q 030848 88 YYEEAHAVVFVIDAACP---SRFEDSKTALEKVLRN-EDLQGAPLLILANKQDLPDA-VSA-DELARYLDLKKLDERVCM 161 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~ii~v~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~~ 161 (170)
.+.+|+..++|+|++.+ ..++.....+.++-.+ ....+.|.++|.||+|+++. ... .++.++++ . ..
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq-----~--~~ 343 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ-----N--PH 343 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC-----C--Cc
Confidence 77899999999999998 8888888888877543 33457899999999999642 222 56666665 1 26
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
++++||++|
T Consensus 344 V~pvsA~~~ 352 (366)
T KOG1489|consen 344 VVPVSAKSG 352 (366)
T ss_pred EEEeeeccc
Confidence 899999875
No 198
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=8.4e-18 Score=130.05 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=98.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCC----------CCCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 81 (170)
.++.++|+++|+.++|||||+++|.+...... +.... ...-|.......+...+..+.++||||++++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 77899999999999999999999975321110 00111 1112333333334445678999999999988
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCCH-----HHHHhHhCcccc
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSA-----DELARYLDLKKL 155 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~~-----~~~~~~~~~~~~ 155 (170)
.......+..+|++++|+|++....- ...+.+..+.. .+.| +++++||+|+.+.... +++.+.+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 77666667899999999999864322 22333333322 2456 7899999999743222 233344433334
Q ss_pred ccceeEEEeeeccCC
Q 030848 156 DERVCMFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~~~~~~~Sa~~g 170 (170)
....++++++||++|
T Consensus 164 ~~~~~~ii~vSa~~g 178 (394)
T PRK12736 164 PGDDIPVIRGSALKA 178 (394)
T ss_pred CcCCccEEEeecccc
Confidence 344689999999875
No 199
>CHL00071 tufA elongation factor Tu
Probab=99.78 E-value=8.7e-18 Score=130.54 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=99.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC----------CCCCcc--cCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 81 (170)
.++.++|+++|++++|||||+++|.+....... ....+. .-|.......+..++.++.++||||+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 678899999999999999999999764221110 111111 11223223344556778999999999888
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCCH-----HHHHhHhCcccc
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSA-----DELARYLDLKKL 155 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~~-----~~~~~~~~~~~~ 155 (170)
.......+..+|++++|+|++.... ....+.+..+.. .+.| +++++||+|+.+.... .++.+.++....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7766777789999999999986532 223333333322 3456 7889999999763221 244444443333
Q ss_pred ccceeEEEeeeccCC
Q 030848 156 DERVCMFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~~~~~~~Sa~~g 170 (170)
....++++++||++|
T Consensus 164 ~~~~~~ii~~Sa~~g 178 (409)
T CHL00071 164 PGDDIPIVSGSALLA 178 (409)
T ss_pred CCCcceEEEcchhhc
Confidence 344689999999876
No 200
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.78 E-value=1.8e-17 Score=133.69 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=94.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CCc----------ccCCcceeEEEEE-----ecCeEEEEEEcCCCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDR----------IVPTVGLNIGRIE-----VSNSKLVFWDLGGQP 79 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~ 79 (170)
...+++++|+.++|||||+.++........... ... ...|+......+. .++..+.+|||||++
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 345899999999999999999976432211110 011 1122222222232 336789999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH---HHHHhHhCccccc
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLD 156 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~---~~~~~~~~~~~~~ 156 (170)
++...+..+++.+|++|+|+|+++....+....+.. ... .+.|+++++||+|+.+.... +++.+.+.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg----- 155 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIG----- 155 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhC-----
Confidence 999889999999999999999998755544333322 222 36789999999999754322 22222222
Q ss_pred cceeEEEeeeccCC
Q 030848 157 ERVCMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~~~~~~~Sa~~g 170 (170)
.....++++||++|
T Consensus 156 ~~~~~vi~iSAktG 169 (600)
T PRK05433 156 IDASDAVLVSAKTG 169 (600)
T ss_pred CCcceEEEEecCCC
Confidence 22235899999986
No 201
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=8.2e-18 Score=131.66 Aligned_cols=137 Identities=27% Similarity=0.333 Sum_probs=88.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC--------CcchhhHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PGLRSIWEKYYE 90 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~ 90 (170)
+|+++|.+|+|||||+|++.+...... ......|...........+..+.+|||||. +.+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v---~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV---SDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee---cCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 589999999999999999976211111 111112333334456677888999999995 334445566788
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.+|++++|+|+.+..+... ..+..++.. .+.|+++|+||+|+.+.... ..+... . ...+++++||++|
T Consensus 78 ~ad~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~-l----g~~~~~~vSa~~g 145 (429)
T TIGR03594 78 EADVILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYS-L----GFGEPIPISAEHG 145 (429)
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHh-c----CCCCeEEEeCCcC
Confidence 9999999999987644332 122222222 36899999999998763321 122222 1 1225889999876
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.77 E-value=8e-18 Score=134.99 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----------------ecCeEEEEEEcCCCCcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~ 81 (170)
.-|+++|++++|||||++++.+. ...........++++......+ .+...+.+|||||++.+
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~--~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGS--AVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc--ccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 46899999999999999999762 2222222222333333222111 11134899999999999
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
..++..+++.+|++++|+|+++....+. .+.+..+ .. .+.|+++++||+|+.+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt-~e~i~~l-~~---~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQT-QEALNIL-RM---YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhH-HHHHHHH-HH---cCCCEEEEEECCCccc
Confidence 9999999999999999999987422221 1112222 11 3679999999999964
No 203
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.77 E-value=2.7e-17 Score=120.96 Aligned_cols=129 Identities=24% Similarity=0.254 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCC-----------CCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG-----------LPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-----------~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 79 (170)
-+|+++|++|+|||||++++......... .... ....++......+.+++..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999643221111 0000 01123334444677888999999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhC
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD 151 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~ 151 (170)
++.......++.+|++|+|+|+++.... ....++... . ..+.|+++++||+|+.+... .+++.+.+.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 8877667778999999999999875332 223333322 2 24689999999999877544 345555554
No 204
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.7e-17 Score=128.41 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=96.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCC----------CCCCCc--ccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 81 (170)
.++.++|+++|+.++|||||+++|........ +....+ ..-|.......+...+..+.++||||++.+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 67889999999999999999999975211110 000111 112333333334445678999999999888
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcE-EEEeeCCCccccCC-HH----HHHhHhCcccc
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPDAVS-AD----ELARYLDLKKL 155 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~v~nK~D~~~~~~-~~----~~~~~~~~~~~ 155 (170)
.......+..+|++++|+|+...... ...+.+..+.. .+.|. ++++||+|+.+... .+ ++.+.++....
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 76666677899999999999864322 22233333222 34564 46899999975222 22 33344433333
Q ss_pred ccceeEEEeeeccCC
Q 030848 156 DERVCMFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~~~~~~~Sa~~g 170 (170)
....++++++||++|
T Consensus 164 ~~~~~~ii~~Sa~~g 178 (396)
T PRK12735 164 PGDDTPIIRGSALKA 178 (396)
T ss_pred CcCceeEEecchhcc
Confidence 334689999999875
No 205
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.5e-17 Score=128.71 Aligned_cols=152 Identities=17% Similarity=0.152 Sum_probs=97.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccC----------CCCCCCc--ccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV----------EGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 81 (170)
.++.++|+++|+.++|||||+++|.+..... .+....+ ...|.......+...+..+.+|||||++.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 6788999999999999999999996421110 0011111 122333333344455678999999999988
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-H----HHHHhHhCcccc
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-A----DELARYLDLKKL 155 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-~----~~~~~~~~~~~~ 155 (170)
..........+|++++|+|++.....+ ..+.+..+.. .+.| +++++||+|+.+... . +++.+.++....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 766666678899999999998743322 2233333322 2445 557899999975322 1 234444443333
Q ss_pred ccceeEEEeeeccCC
Q 030848 156 DERVCMFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~~~~~~~Sa~~g 170 (170)
....++++++||++|
T Consensus 164 ~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 164 PGDDTPIIRGSALKA 178 (394)
T ss_pred CccCccEEECccccc
Confidence 334589999999875
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=6.1e-18 Score=131.31 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=91.8
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe------------------c-------
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV------------------S------- 66 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~------- 66 (170)
-..++.++|+++|+.++|||||+.++.+...+...... ....|+...+..... .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~-~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEEL-KRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHH-hcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 34788999999999999999999999552111111000 011122211100000 0
Q ss_pred -CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH--
Q 030848 67 -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-- 143 (170)
Q Consensus 67 -~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~-- 143 (170)
...+.+|||||++.+..........+|++++|+|++++.........+..+ ... ...|+++++||+|+.++...
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHH
Confidence 257999999999888776666667789999999999653111222222222 111 23478999999999764332
Q ss_pred --HHHHhHhCccccccceeEEEeeeccCC
Q 030848 144 --DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 144 --~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++.+.++.. ....++++++||++|
T Consensus 160 ~~~~i~~~l~~~--~~~~~~ii~vSA~~g 186 (411)
T PRK04000 160 NYEQIKEFVKGT--VAENAPIIPVSALHK 186 (411)
T ss_pred HHHHHHHHhccc--cCCCCeEEEEECCCC
Confidence 2233333211 123578999999986
No 207
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.77 E-value=1.3e-17 Score=130.57 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=103.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC-------------------------CCCCc--ccCCcceeEEEEEec
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPPDR--IVPTVGLNIGRIEVS 66 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------------------------~~~~~--~~~~~~~~~~~~~~~ 66 (170)
.++.++++++|+.++|||||+.+|+........ ....+ ..-|+......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 578899999999999999999998543221110 00111 112444444456667
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccH------HHHHHHHHHHHcCCCCCCC-cEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF------EDSKTALEKVLRNEDLQGA-PLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~-~ii~v~nK~D~~~ 139 (170)
+..+.++|+||+++|.......+..+|++|+|+|+++.... ..+++.+... .. .+. ++++++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA-FT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHH-HH---cCCCcEEEEEEcccCCc
Confidence 78999999999999998888888999999999999873210 2233332222 21 244 5899999999863
Q ss_pred c--------CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 140 A--------VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 140 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
. ...+++.+.++..++....++|+++||++|
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G 198 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEG 198 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccc
Confidence 1 124455555555555556789999999987
No 208
>PLN03126 Elongation factor Tu; Provisional
Probab=99.77 E-value=1.7e-17 Score=130.50 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=101.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC----------CCccc--CCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRIV--PTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 81 (170)
.++.++|+++|+.++|||||+++|........... ..+.. -|+......++.++..+.++|+||++.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 56789999999999999999999975322211111 11111 2333333445667889999999999998
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-HH----HHHhHhCcccc
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-AD----ELARYLDLKKL 155 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-~~----~~~~~~~~~~~ 155 (170)
.......+..+|++++|+|+.+...- ...+.+..... .+.| +++++||+|+.+... .+ ++.+.+...++
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 87777777899999999999865432 23333333322 2455 789999999976322 12 34444443444
Q ss_pred ccceeEEEeeeccCC
Q 030848 156 DERVCMFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~~~~~~~Sa~~g 170 (170)
....++++++||.+|
T Consensus 233 ~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 233 PGDDIPIISGSALLA 247 (478)
T ss_pred CcCcceEEEEEcccc
Confidence 445789999999875
No 209
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=6.1e-17 Score=119.20 Aligned_cols=142 Identities=18% Similarity=0.141 Sum_probs=94.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCC------------CCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcchhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG------------LPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 84 (170)
+|+++|++++|||||++++......... .... ...-++......+.+++.++.+|||||...+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999642221110 0011 1122444445567778899999999999888888
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC---CHHHHHhHhCccccccceeE
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLDLKKLDERVCM 161 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~ 161 (170)
+...++.+|++|+|+|+.+...-+ ....+..... .+.|+++++||+|+.+.. ..+++.+.++ ......
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~----~~~~~~ 151 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVEQIREKLG----ANPVPL 151 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhC----CCceEE
Confidence 888999999999999998754322 2333333322 467999999999997632 2344444444 123344
Q ss_pred EEeeeccC
Q 030848 162 FEAVSGYD 169 (170)
Q Consensus 162 ~~~~Sa~~ 169 (170)
.+|+|+..
T Consensus 152 ~~Pisa~~ 159 (270)
T cd01886 152 QLPIGEED 159 (270)
T ss_pred EeccccCC
Confidence 67777753
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=8.9e-18 Score=128.16 Aligned_cols=146 Identities=21% Similarity=0.180 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC----------Ccchh-hH
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLRS-IW 85 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~-~~ 85 (170)
.+||+++|-|++|||||+|+|.+......+..... |.+.-...+...+.++.++||+|- |.+.. -.
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGT---TRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGT---TRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCc---cccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 59999999999999999999987433333222222 222223356778999999999992 22211 12
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEE
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
...+..+|++++|+|++.+-+.++. .+.......+.++++++||+|+.+. ...++..+.+..........+++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-----~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-----RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-----HHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEE
Confidence 3345889999999999987654443 2222222257889999999999875 66677777776555567788999
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
.+||++|
T Consensus 330 ~iSA~~~ 336 (444)
T COG1160 330 FISALTG 336 (444)
T ss_pred EEEecCC
Confidence 9999986
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.76 E-value=5.8e-17 Score=117.33 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=84.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCC-------CCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCcchhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------LPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 84 (170)
+|+++|+.|+|||||++++......... .... ....++......+..++.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999653221111 0100 1112333444567778899999999999999888
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
+..+++.+|++++|+|+++.... ....++..... .+.|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCC
Confidence 88899999999999999876443 33444444332 36899999999999864
No 212
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.76 E-value=2.3e-17 Score=135.92 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=92.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh---------h-H
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---------I-W 85 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~-~ 85 (170)
+.++|+++|.+|+|||||+|++.+.... ..+....|.+.....+...+..+.+|||||...+.. . .
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~----vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR----VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc----cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence 4578999999999999999999763221 112222344444445667788999999999655421 1 1
Q ss_pred HHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEE
Q 030848 86 EKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 86 ~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
..++ .++|++++|+|+++.+. ...+..++.+ .+.|+++++||+|+.+........+.++ +...+|++
T Consensus 78 ~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVv 146 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVI 146 (772)
T ss_pred HHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEE
Confidence 2232 47899999999987533 3334444433 3689999999999975433332223332 12346899
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||++|
T Consensus 147 piSA~~g 153 (772)
T PRK09554 147 PLVSTRG 153 (772)
T ss_pred EEEeecC
Confidence 9999876
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.75 E-value=2.7e-17 Score=132.29 Aligned_cols=113 Identities=26% Similarity=0.370 Sum_probs=76.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----------------cCeEEEEEEcCCCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----------------SNSKLVFWDLGGQP 79 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~ 79 (170)
....|+++|++++|||||++++.+ ............++++........ ....+.+|||||++
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~--~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRG--TAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC--cccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 445799999999999999999976 222222222222333322221110 11137899999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCC---cccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
.+..++...++.+|++++|+|+++ +.+++.+ ..+ .. .+.|+++++||+|+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~-~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI----NIL-KR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHH-HH---cCCCEEEEEECcCCc
Confidence 999888888899999999999987 3333332 222 11 468999999999985
No 214
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.75 E-value=7.7e-18 Score=115.99 Aligned_cols=127 Identities=30% Similarity=0.470 Sum_probs=80.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cCeEEEEEEcCCCCcchhhHHH---Hhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEK---YYE 90 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~---~~~ 90 (170)
.-.|+++|+.|||||+|+..+.. +...+.+... .-+. .... .+..+.++|+||++.++..... +..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~------~~~~~T~tS~-e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~ 74 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN------GKTVPTVTSM-ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLS 74 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH------SS---B---S-SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHG
T ss_pred CceEEEEcCCCCCHHHHHHHHhc------CCcCCeeccc-cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchh
Confidence 35689999999999999999987 3333333222 1111 2222 4567999999999998764444 478
Q ss_pred ccCEEEEEEeCCC-cccHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 91 EAHAVVFVIDAAC-PSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 91 ~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
.+.++|||+|.+. +....++.+.+..++... ....+|++++.||.|+..+.+...+.+.++
T Consensus 75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 8999999999974 445666777776665432 235799999999999988766666555554
No 215
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.75 E-value=4.8e-17 Score=124.50 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=93.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhh----cccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhH-----
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSV----YSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW----- 85 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----- 85 (170)
+..++++++|.|++|||||+|.+.+. ++++++++.+ .-...+++.+.++.++||+|-++-....
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRD-------viee~i~i~G~pv~l~DTAGiRet~d~VE~iGI 287 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD-------VIEEDINLNGIPVRLVDTAGIRETDDVVERIGI 287 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccc-------eEEEEEEECCEEEEEEecCCcccCccHHHHHHH
Confidence 46689999999999999999999763 3334433332 2244688999999999999954432222
Q ss_pred ---HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848 86 ---EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 86 ---~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
...++++|.+|+|+|++.+.+-.+..... ....+.|+++|.||.|+..+...... .+ ....++
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~ 353 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAI 353 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechhcccccccchh--hc------cCCCce
Confidence 23458899999999999863333322111 22357899999999999876553333 11 223378
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+.+|+++|
T Consensus 354 i~iSa~t~ 361 (454)
T COG0486 354 ISISAKTG 361 (454)
T ss_pred EEEEecCc
Confidence 99999976
No 216
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=4.6e-17 Score=119.47 Aligned_cols=129 Identities=22% Similarity=0.346 Sum_probs=98.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC--CCcc-------hhhHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--QPGL-------RSIWE 86 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--~~~~-------~~~~~ 86 (170)
....|+|.|.|++|||||++++.++.+++..+.+ .|-++.+.++......++++|||| +..+ .+...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPF----TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPF----TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCc----cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 4457999999999999999999987777774443 466777778888889999999999 1111 11122
Q ss_pred HHhhccCEEEEEEeCCCcc--cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 87 KYYEEAHAVVFVIDAACPS--RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
..-+-.+++++++|++..+ +.+.....+.++.... +.|+++|+||+|..+.+..+++...+.
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHH
Confidence 2224578999999998654 5678888888887764 389999999999998777777777665
No 217
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.74 E-value=4.4e-17 Score=128.42 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=97.2
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CCCC-------------C--cccCCcceeEEEE
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP-------------D--RIVPTVGLNIGRI 63 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~~~-------------~--~~~~~~~~~~~~~ 63 (170)
..++.++|+++|+.++|||||+++|+.....+. +... + ...-|+......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 357889999999999999999999965332211 1110 0 1112444444556
Q ss_pred EecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--
Q 030848 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-- 141 (170)
Q Consensus 64 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-- 141 (170)
...+..+.+|||||++.+.......+..+|++++|+|++....-+. ...+ .+.... ...|+++++||+|+.+..
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~-~l~~~l--g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHS-FIATLL--GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHH-HHHHHh--CCCceEEEEEeeccccchhH
Confidence 6677899999999998887655656799999999999976532211 1111 112221 124789999999997422
Q ss_pred CHHHHHhHhC----ccccccceeEEEeeeccCC
Q 030848 142 SADELARYLD----LKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 142 ~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~g 170 (170)
..+++.+.+. .... ....+++++||++|
T Consensus 179 ~~~~i~~~l~~~~~~~~~-~~~~~iipvSA~~g 210 (474)
T PRK05124 179 VFERIREDYLTFAEQLPG-NLDIRFVPLSALEG 210 (474)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCceEEEEEeecC
Confidence 2233333332 1111 23578999999986
No 218
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.74 E-value=3.9e-17 Score=127.88 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=101.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC-------------------------CCCC--cccCCcceeEEEEEec
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPPD--RIVPTVGLNIGRIEVS 66 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------------------------~~~~--~~~~~~~~~~~~~~~~ 66 (170)
.++.++|+++|+.++|||||+.+++........ ...+ ....|+......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 578899999999999999999999653221110 0011 1112444444456667
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc------HHHHHHHHHHHHcCCCCCC-CcEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR------FEDSKTALEKVLRNEDLQG-APLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~-~~ii~v~nK~D~~~ 139 (170)
+..+.++|+||++++.......+..+|++++|+|++.... -....+.+..... .+ .++++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 7899999999999998877888899999999999986531 0122333332222 24 34789999999532
Q ss_pred ----cCC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 140 ----AVS----ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 140 ----~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+.. .+++.+.++..+.....++++++||.+|
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g 198 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQG 198 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccC
Confidence 122 3344444444444445799999999886
No 219
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.74 E-value=1.8e-16 Score=113.55 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=78.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCC----------CC--cccCCcceeEEEEEec----------CeEEEEEEcC
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PD--RIVPTVGLNIGRIEVS----------NSKLVFWDLG 76 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~----------~~~~~i~D~~ 76 (170)
+|+++|+.++|||||+.+|........... .. ...-|+......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999965322111100 00 0111222221122222 6789999999
Q ss_pred CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
|++.+......+++.+|++++|+|+....+.+. ...+..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999988999999999999999998765543 333333322 357899999999986
No 220
>PRK00049 elongation factor Tu; Reviewed
Probab=99.74 E-value=8.1e-17 Score=124.62 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=97.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCC----------CCCCCccc--CCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPDRIV--PTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 81 (170)
.++.++|+++|+.++|||||+++|........ +....+.. -|.......+...+..+.++||||+..+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 57889999999999999999999976321110 00111111 2333333334445678999999999888
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCccccCC-H----HHHHhHhCcccc
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLPDAVS-A----DELARYLDLKKL 155 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-~v~nK~D~~~~~~-~----~~~~~~~~~~~~ 155 (170)
.......+..+|++++|+|++.... ......+..+.. .+.|.+ +++||+|+.+... . .++.+.+.....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 7766677789999999999986533 223333333322 356765 6899999975222 1 233344443333
Q ss_pred ccceeEEEeeeccCC
Q 030848 156 DERVCMFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~~~~~~~Sa~~g 170 (170)
....++++++||++|
T Consensus 164 ~~~~~~iv~iSa~~g 178 (396)
T PRK00049 164 PGDDTPIIRGSALKA 178 (396)
T ss_pred CccCCcEEEeecccc
Confidence 345689999999875
No 221
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.9e-18 Score=114.47 Aligned_cols=142 Identities=15% Similarity=0.332 Sum_probs=117.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cC-eEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SN-SKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
...+++++|..|.||++++++.+. +.....+.+|+++.+..... .+ .++..|||.|+|.+......++-.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~lt------geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~ 82 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLT------GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQ 82 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhc------ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEe
Confidence 578999999999999999999987 77777888999888764332 33 789999999999999988888888
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
..++|++||+...-++.+...|...+...+ .+.||++++||.|...+.......... +..++.+++.||+.+
T Consensus 83 ~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~~-----rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 83 GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAKPVSFH-----RKKNLQYYEISAKSN 154 (216)
T ss_pred cceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccccceee-----ecccceeEEeecccc
Confidence 899999999999999999999999998776 469999999999987755333333333 367788999999864
No 222
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.74 E-value=8.1e-17 Score=116.40 Aligned_cols=83 Identities=28% Similarity=0.325 Sum_probs=59.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-------hhhHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEKYYEE 91 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 91 (170)
+++++|.+|+|||||++++.+........ ...|.......+.+.+..+++||+||..+. .......++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~----~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAY----EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCC----CCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 78999999999999999998743222211 122333334456678889999999996432 2234457799
Q ss_pred cCEEEEEEeCCCcc
Q 030848 92 AHAVVFVIDAACPS 105 (170)
Q Consensus 92 ~~~~i~v~d~~~~~ 105 (170)
+|++++|+|++++.
T Consensus 78 ad~il~V~D~t~~~ 91 (233)
T cd01896 78 ADLILMVLDATKPE 91 (233)
T ss_pred CCEEEEEecCCcch
Confidence 99999999998754
No 223
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=2.2e-17 Score=118.29 Aligned_cols=145 Identities=21% Similarity=0.319 Sum_probs=86.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-ecCeEEEEEEcCCCCcchh-----hHHHHhhcc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQPGLRS-----IWEKYYEEA 92 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~ 92 (170)
||+++|++||||||+.+.+...+.+. ......+|.......+. .....+.+||+||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~---dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR---DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG---GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch---hccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 79999999999999999998632211 12244577777766665 3456999999999876543 457778999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccccCCHHHHHhHhCcc------ccccceeEEEe
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPDAVSADELARYLDLK------KLDERVCMFEA 164 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 164 (170)
+++|||+|+.+.+-.+++ ..+...+.. ...++..+.++++|+|+..+...++..+..+.. ......+.++.
T Consensus 78 ~~LIyV~D~qs~~~~~~l-~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDL-AYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp SEEEEEEETT-STCHHHH-HHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred CEEEEEEEcccccHHHHH-HHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 999999999955533333 333332221 113789999999999997654444433333211 11112477887
Q ss_pred eec
Q 030848 165 VSG 167 (170)
Q Consensus 165 ~Sa 167 (170)
+|-
T Consensus 157 TSI 159 (232)
T PF04670_consen 157 TSI 159 (232)
T ss_dssp E-T
T ss_pred ccC
Confidence 774
No 224
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.74 E-value=8.1e-17 Score=124.99 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCC--------------CC-------------CC--cccCCcceeEEEEEecCe
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LP-------------PD--RIVPTVGLNIGRIEVSNS 68 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------------~~-------------~~--~~~~~~~~~~~~~~~~~~ 68 (170)
+||+++|+.++|||||+++++........ .. .+ ...-|+......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999643222111 10 00 111234444555666778
Q ss_pred EEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC--HHHH
Q 030848 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--ADEL 146 (170)
Q Consensus 69 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--~~~~ 146 (170)
++.++||||++.+.......+..+|++|+|+|++....-+ ..+.+. +.... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 9999999999988766666779999999999998653322 111111 22221 2346899999999975221 1222
Q ss_pred HhHhCc--cccccceeEEEeeeccCC
Q 030848 147 ARYLDL--KKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 147 ~~~~~~--~~~~~~~~~~~~~Sa~~g 170 (170)
.+.+.. .......++++++||++|
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g 182 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKG 182 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccC
Confidence 222210 111123578999999986
No 225
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=1.4e-16 Score=131.33 Aligned_cols=140 Identities=23% Similarity=0.211 Sum_probs=86.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc--------chhhHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEK 87 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 87 (170)
...+|+++|.+++|||||+|++.+......... ...|...........+..+.+|||||.+. +......
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~---pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDT---PGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCC---CCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 446899999999999999999976221111111 11112222223445678899999999653 2344456
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeec
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+++.+|++|+|+|+++.-.. ....+...+.. .+.|+++|+||+|+.... ....+... .+.. ..+++||
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~-lg~~----~~~~iSA 418 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTS--TDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWK-LGLG----EPYPISA 418 (712)
T ss_pred HHHhCCEEEEEEECCCCCCH--HHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHH-cCCC----CeEEEEC
Confidence 67899999999999864322 22222222222 578999999999986532 22222222 1221 2368999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 419 ~~g 421 (712)
T PRK09518 419 MHG 421 (712)
T ss_pred CCC
Confidence 986
No 226
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.73 E-value=4.1e-17 Score=131.56 Aligned_cols=132 Identities=21% Similarity=0.232 Sum_probs=83.7
Q ss_pred cCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh------HHHHh--hccCEE
Q 030848 24 GIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI------WEKYY--EEAHAV 95 (170)
Q Consensus 24 G~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~ 95 (170)
|.+|+|||||+|++.+.... ..+....|.+.....+..++..+.+|||||+..+... ...++ +.+|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~----v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT----VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe----ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence 89999999999999763211 1111122333333456667788999999998765432 23333 378999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|+++.+ ....+..++.. .+.|+++++||+|+.++.......+.+. +..+++++++||++|
T Consensus 77 I~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg 140 (591)
T TIGR00437 77 VNVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEG 140 (591)
T ss_pred EEEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCC
Confidence 9999998743 22333333333 4689999999999965332222222222 123468999999986
No 227
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.73 E-value=1.3e-16 Score=129.01 Aligned_cols=145 Identities=18% Similarity=0.159 Sum_probs=92.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCc--ccCCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
-|+++|+.++|||||++++.+... +...++ ...|+...+..+.. .+..+.+|||||++.+.......+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~---dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNA---DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 578999999999999999976321 112222 23455444444433 346789999999998877777778999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcc--ccccceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLK--KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g 170 (170)
++|+|+++... ....+.+. +.... ...++++++||+|+.++...++..+.++.. .......+++++||++|
T Consensus 79 lLVVda~eg~~-~qT~ehl~-il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG 151 (614)
T PRK10512 79 LLVVACDDGVM-AQTREHLA-ILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG 151 (614)
T ss_pred EEEEECCCCCc-HHHHHHHH-HHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 99999987432 22222222 22221 123468999999997644333333333211 11123468999999987
No 228
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=1e-16 Score=130.64 Aligned_cols=158 Identities=18% Similarity=0.124 Sum_probs=98.4
Q ss_pred HhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CCCCC---------------cccCCccee
Q 030848 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPPD---------------RIVPTVGLN 59 (170)
Q Consensus 9 ~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~~~~---------------~~~~~~~~~ 59 (170)
.....+++.++|+++|++++|||||+++|+.....+. +.+.. ...-|+...
T Consensus 16 ~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~ 95 (632)
T PRK05506 16 LAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVA 95 (632)
T ss_pred HhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceee
Confidence 3344567889999999999999999999965332211 11100 011234444
Q ss_pred EEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 60 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
...+...+.++.++||||++.+.......+..+|++++|+|++....-+ ....+. +.... ...++++++||+|+.+
T Consensus 96 ~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~--~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 96 YRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLL--GIRHVVLAVNKMDLVD 171 (632)
T ss_pred eeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHh--CCCeEEEEEEeccccc
Confidence 4456677889999999999887665556678999999999997653221 111111 11211 2357899999999974
Q ss_pred --cCCHHHHHhHhCc--cccccceeEEEeeeccCC
Q 030848 140 --AVSADELARYLDL--KKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 140 --~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~g 170 (170)
....++..+.+.. .......++++++||++|
T Consensus 172 ~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g 206 (632)
T PRK05506 172 YDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKG 206 (632)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCccEEEEecccC
Confidence 2222223222210 111124568999999986
No 229
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.72 E-value=2.2e-16 Score=112.78 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=77.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCC-----C----CCC----ccc--CCcceeEEEEE-----ecCeEEEEEEcCCC
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-----L----PPD----RIV--PTVGLNIGRIE-----VSNSKLVFWDLGGQ 78 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-----~----~~~----~~~--~~~~~~~~~~~-----~~~~~~~i~D~~G~ 78 (170)
+|+++|+.|+|||||++++......... . ..+ ... .++......+. .....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999763322210 0 000 010 11111111221 23467999999999
Q ss_pred CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
..+......+++.+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999987765532 233333322 358999999999975
No 230
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=8.7e-17 Score=122.78 Aligned_cols=138 Identities=22% Similarity=0.236 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-----c----hhhHHHH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-----L----RSIWEKY 88 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----~----~~~~~~~ 88 (170)
..|+++|-|++|||||+|+|.+.-...... ...-|-+-.+....+.+..+.++||+|-+. + .......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D---~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD---TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeec---CCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 579999999999999999997632211111 111222333445777888899999999432 2 2344456
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
+.++|++|+|+|....-+-+ .+.+..++.. .+.|+++|.||+|-. ...+...+++. .++ -..+++||.
T Consensus 81 i~eADvilfvVD~~~Git~~--D~~ia~~Lr~---~~kpviLvvNK~D~~--~~e~~~~efys-lG~----g~~~~ISA~ 148 (444)
T COG1160 81 IEEADVILFVVDGREGITPA--DEEIAKILRR---SKKPVILVVNKIDNL--KAEELAYEFYS-LGF----GEPVPISAE 148 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHH--HHHHHHHHHh---cCCCEEEEEEcccCc--hhhhhHHHHHh-cCC----CCceEeehh
Confidence 78999999999998754432 2333333332 578999999999975 33334444444 333 257888887
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 149 Hg 150 (444)
T COG1160 149 HG 150 (444)
T ss_pred hc
Confidence 65
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.72 E-value=2.4e-16 Score=113.21 Aligned_cols=147 Identities=24% Similarity=0.238 Sum_probs=88.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhh-cccCCCCCCC-------c--ccC-------Ccce-----------------eEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV-YSNVEGLPPD-------R--IVP-------TVGL-----------------NIGRIE 64 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~-~~~~~~~~~~-------~--~~~-------~~~~-----------------~~~~~~ 64 (170)
|++++|+.++|||||++++... ..+..+.... + ... ..+. ....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999641 1110000000 0 000 0000 012234
Q ss_pred ecCeEEEEEEcCCCCcchhhHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848 65 VSNSKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (170)
Q Consensus 65 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~ 142 (170)
..+..+.++||||++.+.......+. .+|++++|+|++.... ......+..+.. .+.|+++++||+|+.++..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH
Confidence 45678999999999888665554443 6899999999886543 222333333322 3678999999999876443
Q ss_pred HHHHHh----HhCccc---------------------cccceeEEEeeeccCC
Q 030848 143 ADELAR----YLDLKK---------------------LDERVCMFEAVSGYDG 170 (170)
Q Consensus 143 ~~~~~~----~~~~~~---------------------~~~~~~~~~~~Sa~~g 170 (170)
..+..+ .++..+ .....+|++.+||.+|
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg 208 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG 208 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc
Confidence 333333 333111 1233569999999987
No 232
>PLN03127 Elongation factor Tu; Provisional
Probab=99.72 E-value=2.9e-16 Score=122.84 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=96.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccC----------CCCCCCc--ccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNV----------EGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
..++.++|+++|+.++|||||+++|.+..... .+...++ ...|+......++.++.++.++||||+..
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 36788999999999999999999996421110 0111111 12244444445555677899999999988
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-HH----HHHhHhCccc
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-AD----ELARYLDLKK 154 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-~~----~~~~~~~~~~ 154 (170)
+.......+..+|++++|+|++....- ...+.+..+.. .+.| +++++||+|+.+... .+ ++.+.+....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 876666666789999999998765332 22333333322 3567 578999999975222 11 2223332223
Q ss_pred cccceeEEEeeeccC
Q 030848 155 LDERVCMFEAVSGYD 169 (170)
Q Consensus 155 ~~~~~~~~~~~Sa~~ 169 (170)
.....+|++++||..
T Consensus 212 ~~~~~vpiip~Sa~s 226 (447)
T PLN03127 212 FPGDEIPIIRGSALS 226 (447)
T ss_pred CCCCcceEEEeccce
Confidence 334568999998863
No 233
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.71 E-value=2.8e-16 Score=107.39 Aligned_cols=138 Identities=22% Similarity=0.218 Sum_probs=79.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCc--ceeEEEEEecCeEEEEEEcCCCCc----------chhhHH
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTV--GLNIGRIEVSNSKLVFWDLGGQPG----------LRSIWE 86 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 86 (170)
.|+++|++|+|||||++.+.+ ........++. ......+... ..+.+|||||... +.....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~------~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTN------RKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhc------CCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHH
Confidence 379999999999999999983 11111111111 1111122222 3899999999432 233334
Q ss_pred HHhh---ccCEEEEEEeCCCcccHHH--HHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-cccee
Q 030848 87 KYYE---EAHAVVFVIDAACPSRFED--SKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVC 160 (170)
Q Consensus 87 ~~~~---~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (170)
.++. ..+.+++++|.++..+... +..++.. .+.|+++++||+|+............+..... .....
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDP 146 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 4443 4578899999886643222 2222221 25789999999999654433333222221110 23456
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
+++++||++|
T Consensus 147 ~~~~~Sa~~~ 156 (170)
T cd01876 147 PIILFSSLKG 156 (170)
T ss_pred ceEEEecCCC
Confidence 7899999875
No 234
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.71 E-value=8.8e-16 Score=100.99 Aligned_cols=144 Identities=23% Similarity=0.363 Sum_probs=104.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EE---ecCeEEEEEEcCCCCcc-hhhHHHHhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE---VSNSKLVFWDLGGQPGL-RSIWEKYYE 90 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~i~D~~G~~~~-~~~~~~~~~ 90 (170)
+..|++|+|.-++|||+++..+.-- ........-||++..+.. ++ +..-.+.++||.|-... .++-..|++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg----~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYG----NHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhc----cCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 4579999999999999999999641 122233445666554432 21 23356999999996555 556667888
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
-+|+.++||+..+++||+.....-..|-.....+.+||++++||+|+.+ +...+-+..-++ .+.+...+++|.
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~-----rEkvkl~eVta~ 158 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK-----REKVKLWEVTAM 158 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh-----hhheeEEEEEec
Confidence 9999999999999999998887777776666667899999999999954 444544444444 444556666654
No 235
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.6e-17 Score=124.04 Aligned_cols=157 Identities=19% Similarity=0.249 Sum_probs=102.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC--------------CC-----------CC--cccCCcceeEEEEEec
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LP-----------PD--RIVPTVGLNIGRIEVS 66 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------------~~-----------~~--~~~~~~~~~~~~~~~~ 66 (170)
.++.++++++|+..+||||++-+|+-....+.. .. .+ ....|+......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 578999999999999999999998433222221 10 11 1122455555566667
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHH---HHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cC
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE---DSKTALEKVLRNEDLQGAPLLILANKQDLPD--AV 141 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~ 141 (170)
...+.|+|+||+..+..-....+..+|+.|+|+|+++.+... ...+..+.++-.....-..+|+++||+|+.+ +.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 788999999999998887777889999999999998774211 1111111111111112456899999999986 22
Q ss_pred CHH----HHHhHhCccccccceeEEEeeeccCC
Q 030848 142 SAD----ELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 142 ~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
-.+ ++....+..++....++|+|+||.+|
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G 196 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKG 196 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccC
Confidence 222 22333334556666899999999987
No 236
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.70 E-value=1.3e-15 Score=125.34 Aligned_cols=149 Identities=17% Similarity=0.079 Sum_probs=96.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCC--CCCC------------cccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 81 (170)
+..+|+++|++++|||||++++......... .... ....|+......+.+++..+.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 3458999999999999999999653222110 0000 1122444445567778899999999999888
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeE
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM 161 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (170)
...+...++.+|++++|+|+.+....+. ...+..... .+.|+++++||+|+.... .++..+.++...-......
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~ 162 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR----YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVPI 162 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCceeE
Confidence 7778888999999999999987654432 233333322 467999999999998644 3333333321111122234
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
.+++|+..|
T Consensus 163 ~ipis~~~~ 171 (689)
T TIGR00484 163 QLPIGAEDN 171 (689)
T ss_pred EeccccCCC
Confidence 666776543
No 237
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.3e-16 Score=104.95 Aligned_cols=130 Identities=38% Similarity=0.631 Sum_probs=109.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
++.-|+++.|--++|||||++.+-. ... ....||..-+.....+.+..++-+|++|+..-+..|..|+..+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKd--Drl-----~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~ 90 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKD--DRL-----GQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDA 90 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcc--ccc-----cccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhce
Confidence 5667999999999999999999954 111 233345555555678889999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
+++.+|+-+.+.+.+.+.....++......+.|+++.+||+|.+.+.+.++.+..+.
T Consensus 91 iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~ 147 (193)
T KOG0077|consen 91 IVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLG 147 (193)
T ss_pred eEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHH
Confidence 999999999999999988888887766667899999999999999888777766554
No 238
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=1.7e-15 Score=98.16 Aligned_cols=107 Identities=24% Similarity=0.356 Sum_probs=69.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc---------hhhHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKYY 89 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 89 (170)
+|+++|.+|+|||||+|+|.+..... .......|.......+...+..+.++||||-... .......+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~---~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK---VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE---ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc---ccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 68999999999999999998621111 1111223333334456778899999999994321 11233344
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK 134 (170)
+.+|++++|+|++++.. +.....+..+ . .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence 78999999999776322 2233333333 2 57899999998
No 239
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.2e-15 Score=112.64 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=81.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCC-------CCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCcchhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------LPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 84 (170)
+|+++|++|+|||||++++......... .... ....++......+.+.+..+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999652211110 0000 0122333444456677889999999999888777
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
+...++.+|++++|+|+++...... ...+..... .+.|.++++||+|+.+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCccCCC
Confidence 7888899999999999987655432 223333222 46799999999999875
No 240
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.69 E-value=9.4e-17 Score=125.09 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=103.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcc---cCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
++..+||+++|+.|+|||||+-++.. ...++.. .+-+.+.. .+.-......++|++..++.+......++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~------eef~~~VP~rl~~i~IPa-dvtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLE------EEFVDAVPRRLPRILIPA-DVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHh------hhccccccccCCccccCC-ccCcCcCceEEEecccccchhHHHHHHHh
Confidence 46789999999999999999999976 2222222 22222221 12223456899999987777777777789
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccccCCH--H-HHHhHhCccccccceeEEEee
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSA--D-ELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~ 165 (170)
++|+++++++.+++.+++.+...|..+++... ..+.|+|+|+||+|....... + +....+. ...+.-.+++|
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~---~f~EiEtciec 155 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMI---AFAEIETCIEC 155 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHH---HhHHHHHHHhh
Confidence 99999999999999999999888888877654 357899999999999763332 1 1222222 12233357888
Q ss_pred eccC
Q 030848 166 SGYD 169 (170)
Q Consensus 166 Sa~~ 169 (170)
||++
T Consensus 156 SA~~ 159 (625)
T KOG1707|consen 156 SALT 159 (625)
T ss_pred hhhh
Confidence 8875
No 241
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.2e-15 Score=118.41 Aligned_cols=145 Identities=23% Similarity=0.299 Sum_probs=105.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
...-++++|+...|||||+..++. +++........ |..+.-+.+.. ....+.++||||++.|..++.+..+-+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~--t~Va~~EaGGI--TQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vt 79 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRK--TNVAAGEAGGI--TQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVT 79 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhc--CccccccCCce--eeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccc
Confidence 345689999999999999999987 44544444444 33444444554 346899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc----cceeEEEeeecc
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGY 168 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 168 (170)
|.+++|+++++.-.-+.. +.+... ...+.|+++.+||+|.++ ..++.....++..++. .....++++||+
T Consensus 80 DIaILVVa~dDGv~pQTi-EAI~ha----k~a~vP~iVAiNKiDk~~-~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~ 153 (509)
T COG0532 80 DIAILVVAADDGVMPQTI-EAINHA----KAAGVPIVVAINKIDKPE-ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAK 153 (509)
T ss_pred cEEEEEEEccCCcchhHH-HHHHHH----HHCCCCEEEEEecccCCC-CCHHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence 999999999976443322 222222 225899999999999984 5555555555545542 335789999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 154 tg 155 (509)
T COG0532 154 TG 155 (509)
T ss_pred CC
Confidence 87
No 242
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.67 E-value=7.4e-16 Score=120.59 Aligned_cols=155 Identities=16% Similarity=0.073 Sum_probs=95.1
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-----------------EE----------
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-----------------IE---------- 64 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~---------- 64 (170)
+.++.+++|.++|+..+|||||+.+|.+.......... ...-|+.+.+.. ..
T Consensus 29 ~~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~-~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (460)
T PTZ00327 29 ISRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREK-VRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCP 107 (460)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhH-HhCCchhccccccccccCcccCCcccccccCCCcccccccc
Confidence 46789999999999999999999999764332111000 000111111100 00
Q ss_pred ------ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 65 ------VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 65 ------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
.....+.++|+||++.+.......+..+|++++|+|++.+.......+.+. +.... .-.++++++||+|+.
T Consensus 108 ~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv 184 (460)
T PTZ00327 108 GCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLV 184 (460)
T ss_pred cccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEeccccc
Confidence 002468999999999988777777789999999999987421122222222 22222 234789999999997
Q ss_pred ccCCHHHHHhHhCcc--ccccceeEEEeeeccCC
Q 030848 139 DAVSADELARYLDLK--KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g 170 (170)
+....++..+.++.. .......+++++||++|
T Consensus 185 ~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G 218 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLK 218 (460)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCC
Confidence 644333333333211 11235789999999986
No 243
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.67 E-value=9.4e-16 Score=108.28 Aligned_cols=113 Identities=21% Similarity=0.373 Sum_probs=64.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC-CcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHH-----h
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP-TVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKY-----Y 89 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~-----~ 89 (170)
+++|+++|.+|+|||||+|++.+......+........ +... ..+.. ....+.+|||||..........+ +
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence 47899999999999999999987322111111111101 1111 11111 13468999999964432222222 5
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
.++|+++++.+. .+......+...+.. .+.|+++|+||+|+.
T Consensus 79 ~~~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~ 120 (197)
T cd04104 79 SEYDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRD 120 (197)
T ss_pred cCcCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccch
Confidence 678888887532 233333333333333 257899999999984
No 244
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.67 E-value=1.4e-16 Score=105.03 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=110.3
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE----EEecCeEEEEEEcCCCCcchhhHHHH
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~ 88 (170)
.+.-.++|.++|++..|||||+-...+ +...+.+..+.+++... +...+..+.+||++|++++..+.+..
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~------~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia 89 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQ------NEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA 89 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhc------chhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence 345678999999999999999988866 44445666677776552 34456779999999999999998888
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC--ccccccceeEEEeee
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVS 166 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~S 166 (170)
.+++-+++++||++.++++..+.+|+.+...... ...| +++++|-|+.-..+++-..+... +.+....+.+.+.||
T Consensus 90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~S 167 (205)
T KOG1673|consen 90 CKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCS 167 (205)
T ss_pred ecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEee
Confidence 8999999999999999999999999998865432 3344 67899999764333332222111 233347778888888
Q ss_pred ccC
Q 030848 167 GYD 169 (170)
Q Consensus 167 a~~ 169 (170)
+.+
T Consensus 168 ts~ 170 (205)
T KOG1673|consen 168 TSH 170 (205)
T ss_pred ccc
Confidence 754
No 245
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=112.17 Aligned_cols=131 Identities=26% Similarity=0.370 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC-------CCcchhhHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-------QPGLRSIWEKYYE 90 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-------~~~~~~~~~~~~~ 90 (170)
..|.+||-|++|||||++.++.+.+.+.++.+++..|+.++-.. ....++.+-|.|| ..-+...+...+.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 45789999999999999999999999999999999999888432 4556799999999 2233445666778
Q ss_pred ccCEEEEEEeCCCcc---cHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCccc-cCCHHHHHhHhC
Q 030848 91 EAHAVVFVIDAACPS---RFEDSKTALEKVLRN-EDLQGAPLLILANKQDLPD-AVSADELARYLD 151 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~ 151 (170)
+|.+++.|+|++..+ ..++......++..+ ....+.|.++++||+|++. ++..++..+.++
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~ 302 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA 302 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH
Confidence 999999999998654 356666666666544 3346789999999999544 455555555555
No 246
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.67 E-value=1.5e-15 Score=100.55 Aligned_cols=123 Identities=23% Similarity=0.297 Sum_probs=86.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----CCcchhhHHHHhhccCE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~~~ 94 (170)
||.+||+.|+|||||+++|.+ ....+..|..+. +. =.++|||| +..+.........++|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~--------~~~~~~KTq~i~-----~~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG--------EEIRYKKTQAIE-----YY---DNTIDTPGEYIENPRFYHALIVTAQDADV 66 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC--------CCCCcCccceeE-----ec---ccEEECChhheeCHHHHHHHHHHHhhCCE
Confidence 799999999999999999965 112333343332 11 13489999 44555555666689999
Q ss_pred EEEEEeCCCccc-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-ccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|.|++++.+ +.. .+... -+.|+|=|+||+|+. +....+...+.++..+.. .++++|+.+|
T Consensus 67 V~ll~dat~~~~~~pP------~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~ 131 (143)
T PF10662_consen 67 VLLLQDATEPRSVFPP------GFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTG 131 (143)
T ss_pred EEEEecCCCCCccCCc------hhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCC
Confidence 999999998643 221 11111 357899999999998 456777777777766664 3699999876
No 247
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=8.7e-16 Score=119.14 Aligned_cols=146 Identities=22% Similarity=0.257 Sum_probs=108.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
...-+.++|+...|||||+..+++ +.+.........+-++.....++ .+.++++.||||+..|..++.+..+.+|.+
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRk--s~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRK--SSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhh--CceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 456789999999999999999987 54554555555556666555555 678999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc----cceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g 170 (170)
++|+.++|.-.-+. .+.+... ...+.|+|+.+||+|.++.....-..+.+. .++. .-.+.++++||++|
T Consensus 229 VLVVAadDGVmpQT-~EaIkhA----k~A~VpiVvAinKiDkp~a~pekv~~eL~~-~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 229 VLVVAADDGVMPQT-LEAIKHA----KSANVPIVVAINKIDKPGANPEKVKRELLS-QGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEccCCccHhH-HHHHHHH----HhcCCCEEEEEeccCCCCCCHHHHHHHHHH-cCccHHHcCCceeEEEeecccC
Confidence 99999987644332 2222222 225899999999999987655554444444 3332 23678999999987
No 248
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.66 E-value=1.1e-15 Score=121.61 Aligned_cols=131 Identities=22% Similarity=0.245 Sum_probs=89.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCC--C--------C-C-CC------cccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G--------L-P-PD------RIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--~--------~-~-~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
...+|+++|+.++|||||++++......+. + . . .+ ....++......+.+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456899999999999999999964222111 0 0 0 00 011233333446778889999999999
Q ss_pred CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhC
Q 030848 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD 151 (170)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~ 151 (170)
+..+.......++.+|++|+|+|+++.... ....++.... ..+.|+++++||+|+..... .+++.+.+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR----LRDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH----hcCCCEEEEEECCcccccCHHHHHHHHHHHhC
Confidence 998887777788999999999999875322 2333333322 25789999999999877543 345555554
No 249
>PRK12739 elongation factor G; Reviewed
Probab=99.65 E-value=9.5e-15 Score=120.21 Aligned_cols=122 Identities=19% Similarity=0.119 Sum_probs=85.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCC--CC----------C--CcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LP----------P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--~~----------~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
....+|+++|+.++|||||++++......... .. . ....-|+......+.+.+..+.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 34568999999999999999999653221110 00 0 0122344444556777889999999999888
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
+...+...++.+|++|+|+|+.+....+ ....+..... .+.|+++++||+|+.+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~~~----~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQADK----YGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 8777888889999999999998764332 2233333322 467899999999998643
No 250
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.64 E-value=1.7e-15 Score=111.93 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=69.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCC----CCCcccCCcceeEEE--EEecC--eEEEEEEcCCCCcc---hhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGL---RSI 84 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~--~~~~i~D~~G~~~~---~~~ 84 (170)
-.++|+++|.+|+|||||+|++.+..-..... ......+|....... +...+ .++.+|||||.... ...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 36899999999999999999997621111110 011133444444332 23333 57999999993211 000
Q ss_pred H-----------HH------------Hhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 85 W-----------EK------------YYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 85 ~-----------~~------------~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+ .. .+. ++|+++|+++.+.......-...+..+. ...|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 0 11 111 4788888888764221121133333332 2589999999999965
Q ss_pred cC
Q 030848 140 AV 141 (170)
Q Consensus 140 ~~ 141 (170)
+.
T Consensus 158 ~~ 159 (276)
T cd01850 158 PE 159 (276)
T ss_pred HH
Confidence 33
No 251
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.64 E-value=5.3e-15 Score=117.77 Aligned_cols=136 Identities=21% Similarity=0.285 Sum_probs=95.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC------CcchhhHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGLRSIWEKYY 89 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~~~~~~~~~ 89 (170)
+..+++++|+|++|||||+|++.+....+. +...-|.+-....+..++..+.++|+||- ........+++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~Vg----NwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l 77 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVG----NWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL 77 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceec----CCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence 346799999999999999999987322222 23334555555567778888999999991 11111222232
Q ss_pred --hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----CCHHHHHhHhCccccccceeEEE
Q 030848 90 --EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 90 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
.+.|+++.|+|++|- +.......++++ -+.|++++.|++|...+ .+.+++.+.+ ++|++
T Consensus 78 l~~~~D~ivnVvDAtnL---eRnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv 142 (653)
T COG0370 78 LEGKPDLIVNVVDATNL---ERNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVV 142 (653)
T ss_pred hcCCCCEEEEEcccchH---HHHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEE
Confidence 457999999999875 555555566666 37789999999998763 4455555554 47899
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||++|
T Consensus 143 ~tvA~~g 149 (653)
T COG0370 143 PTVAKRG 149 (653)
T ss_pred EEEeecC
Confidence 9999986
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=1.1e-14 Score=116.06 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=87.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCC------C-----CCC-------cccCCcceeEEEEEecCeEEEEEEcC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------L-----PPD-------RIVPTVGLNIGRIEVSNSKLVFWDLG 76 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~------~-----~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~ 76 (170)
....+|+++|++++|||||+++++.....+.. . ... ....++......+++++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 34568999999999999999998532211110 0 000 01123333344577788999999999
Q ss_pred CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC---CHHHHHhHhC
Q 030848 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLD 151 (170)
Q Consensus 77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~---~~~~~~~~~~ 151 (170)
|+..+.......++.+|++|+|+|+.+.-. .....++. .... .+.|+++++||+|+.... -.+++.+.+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~~~~~~ll~~i~~~l~ 161 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDIRDPLELLDEVENELK 161 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccCCCHHHHHHHHHHHhC
Confidence 998887767777899999999999986422 22333333 2222 468999999999986532 2344444444
No 253
>PRK00007 elongation factor G; Reviewed
Probab=99.64 E-value=1.4e-14 Score=119.15 Aligned_cols=150 Identities=15% Similarity=0.044 Sum_probs=96.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCC--CC----------C--CcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LP----------P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--~~----------~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
.+..+|+++|.+++|||||++++......... .. . ....-|+......+.+.+..+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 34568999999999999999999642221110 00 0 0112233333445677889999999999887
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
+.......++.+|++++|+|+...-..+. ...+..+.. .+.|.++++||+|+.+.. ..+..+.++...-.....
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~~ 161 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANPVP 161 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCeee
Confidence 76667777899999999999876543332 333333332 367889999999998644 333444443222222334
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
..+++||..|
T Consensus 162 ~~ipisa~~~ 171 (693)
T PRK00007 162 IQLPIGAEDD 171 (693)
T ss_pred EEecCccCCc
Confidence 5667777653
No 254
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=100.69 Aligned_cols=121 Identities=23% Similarity=0.303 Sum_probs=75.9
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcch
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLR 82 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~ 82 (170)
......-|+++|.+++|||||+|++.+.. .....+.....|..+++ +++.+. +.++|+|| .+...
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k--~LArtSktPGrTq~iNf--f~~~~~-~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQK--NLARTSKTPGRTQLINF--FEVDDE-LRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCc--ceeecCCCCCccceeEE--EEecCc-EEEEeCCCcccccCCHHHHHHHH
Confidence 34455689999999999999999998721 11122223333444443 333332 89999999 22233
Q ss_pred hhHHHHhh---ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH
Q 030848 83 SIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA 143 (170)
Q Consensus 83 ~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~ 143 (170)
.+...|++ +-.++++++|+..+....+. +.+ +++. ..+.|+++++||+|.......
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~-~~l~---~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMI-EFLL---ELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHH-HHHH---HcCCCeEEEEEccccCChhHH
Confidence 34445554 35688889999876554322 222 2222 258999999999999875444
No 255
>PRK13351 elongation factor G; Reviewed
Probab=99.63 E-value=1.4e-14 Score=119.42 Aligned_cols=121 Identities=24% Similarity=0.208 Sum_probs=89.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCC-------CCCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------GLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
....+|+++|+.|+|||||++++........ +.... ....|+......+.+.+..+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3557899999999999999999975322110 00111 233455555667778889999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
+...+..+++.+|++++|+|+++....+.. ..+..... .+.|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 888888899999999999999887665533 33333322 46899999999999874
No 256
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=8.2e-15 Score=101.59 Aligned_cols=124 Identities=29% Similarity=0.446 Sum_probs=88.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhh---
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE--- 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~--- 90 (170)
++..-.++++|+.+||||+|+-.+.. +.....+ +.+..+...+......+.++|.||+.+.+.-...+++
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~------gs~~~Tv-tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~ 107 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLIT------GSHRGTV-TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNY 107 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhc------CCccCee-eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccc
Confidence 33446799999999999999999875 2222222 2333333345555666999999999999887777777
Q ss_pred ccCEEEEEEeCCC-cccHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCccccCCHH
Q 030848 91 EAHAVVFVIDAAC-PSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPDAVSAD 144 (170)
Q Consensus 91 ~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ii~v~nK~D~~~~~~~~ 144 (170)
.+.++++|+|..- +....++.+.+..++... ....+|++++.||.|+.-+.+.+
T Consensus 108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~ 164 (238)
T KOG0090|consen 108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAE 164 (238)
T ss_pred cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHH
Confidence 7899999998753 334566777777776543 35679999999999997544433
No 257
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.9e-15 Score=114.55 Aligned_cols=149 Identities=17% Similarity=0.138 Sum_probs=101.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC-----------cccCCcceeEEEEEecC---eEEEEEEcCCCCc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-----------RIVPTVGLNIGRIEVSN---SKLVFWDLGGQPG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---~~~~i~D~~G~~~ 80 (170)
.+.-++.+|-+...|||||..+++..+.-+.....+ +..-|+....-.+.+++ ..+.++||||+..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 344579999999999999999997765533322111 11123333333344444 8899999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
|.....+.+.-|+++|+|+|+++.-.-+.....+..+.. +..+|.|+||+|++.+....-..+..+... ....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~--~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSADPERVENQLFELFD--IPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCCHHHHHHHHHHHhc--CCcc
Confidence 999899889999999999999976554444444444433 566999999999987544333333332222 3344
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
+.+-+|||+|
T Consensus 211 ~~i~vSAK~G 220 (650)
T KOG0462|consen 211 EVIYVSAKTG 220 (650)
T ss_pred ceEEEEeccC
Confidence 7888999987
No 258
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.63 E-value=7.1e-15 Score=103.72 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-------hhhH----H
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIW----E 86 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~----~ 86 (170)
++|+++|.+|+||||++|.|.+.. ...........|..+........+..+.++||||-... .... .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~--~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGRE--VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCC--ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999998732 11111112233555555556678889999999993221 1111 1
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCccccC
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPDAV 141 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~~~ 141 (170)
...+..|++|+|+++.. .+ +.....+..+....+. ...++++++|++|.....
T Consensus 79 ~~~~g~~~illVi~~~~-~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FT-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred hcCCCCEEEEEEEECCC-cC-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 22356899999999886 22 2222333333332221 125789999999987644
No 259
>COG2262 HflX GTPases [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=109.48 Aligned_cols=142 Identities=26% Similarity=0.319 Sum_probs=95.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCc---------chhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG---------LRSI 84 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~---------~~~~ 84 (170)
..-..|.++|.+++|||||+|++.+...... +..+.|..-+...+.+. +..+.+-||.|.-. |.++
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~----d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVA----DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecc----ccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence 3556899999999999999999976433333 34445555556667776 57899999999322 2222
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
.. ....+|.++.|+|+++|...+.+... ..++...+....|++.+.||+|+..... ....+. ......+.
T Consensus 266 LE-E~~~aDlllhVVDaSdp~~~~~~~~v-~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~-----~~~~~~v~ 335 (411)
T COG2262 266 LE-EVKEADLLLHVVDASDPEILEKLEAV-EDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELE-----RGSPNPVF 335 (411)
T ss_pred HH-HhhcCCEEEEEeecCChhHHHHHHHH-HHHHHHcCCCCCCEEEEEecccccCchh---hhhhhh-----hcCCCeEE
Confidence 22 23679999999999999555544443 3444444446799999999999865443 222222 11115788
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 336 iSA~~~ 341 (411)
T COG2262 336 ISAKTG 341 (411)
T ss_pred EEeccC
Confidence 899886
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.60 E-value=2.4e-14 Score=107.52 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=58.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE-------------------E-ecCeEEEEEEcCCC-
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-------------------E-VSNSKLVFWDLGGQ- 78 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~i~D~~G~- 78 (170)
|+++|.+++|||||+|++.+.........+....|+.+...... + .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999987544444444555566665544311 1 13367999999995
Q ss_pred ---Ccchh---hHHHHhhccCEEEEEEeCC
Q 030848 79 ---PGLRS---IWEKYYEEAHAVVFVIDAA 102 (170)
Q Consensus 79 ---~~~~~---~~~~~~~~~~~~i~v~d~~ 102 (170)
++... .+...++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 33333 3344589999999999997
No 261
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.59 E-value=2.7e-14 Score=104.83 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=69.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC-------CCcchhhHHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-------QPGLRSIWEKY 88 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-------~~~~~~~~~~~ 88 (170)
....+++||.|++|||||++++.+..++...+.+++..+.-+. +.+++..++++|+|| ...........
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~----l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM----LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccce----EeecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 4578999999999999999999998788887777666555554 889999999999998 12222345556
Q ss_pred hhccCEEEEEEeCCCccc
Q 030848 89 YEEAHAVVFVIDAACPSR 106 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~ 106 (170)
.+.||.+++|+|+..+..
T Consensus 138 ~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 138 ARNADLIIIVLDVFEDPH 155 (365)
T ss_pred eccCCEEEEEEecCCChh
Confidence 799999999999986543
No 262
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=1.4e-13 Score=109.73 Aligned_cols=100 Identities=25% Similarity=0.246 Sum_probs=63.5
Q ss_pred eEEEEEEcCCCCc-----chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-
Q 030848 68 SKLVFWDLGGQPG-----LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV- 141 (170)
Q Consensus 68 ~~~~i~D~~G~~~-----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~- 141 (170)
.++.++||||-.. +.......+.++|++|+|+|++...+..+ ......+ ...+ ++.|+++++||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~L-kk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAI-LAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHH-HhcC-CCCCEEEEEEcccCCCccc
Confidence 4789999999422 23334456899999999999987544333 2222233 2221 235999999999986532
Q ss_pred -CHHHHHhHhCcc--ccccceeEEEeeeccCC
Q 030848 142 -SADELARYLDLK--KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 142 -~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g 170 (170)
..+.+.+.+... ........++++||++|
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG 338 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWG 338 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Confidence 255555554311 12234567999999986
No 263
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.55 E-value=8.8e-14 Score=104.80 Aligned_cols=85 Identities=24% Similarity=0.479 Sum_probs=74.6
Q ss_pred CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCc----------ccHHHHHHHHHHHHcCCCC
Q 030848 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNEDL 123 (170)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~ 123 (170)
+|+++....+.+.+..+.+||++|+...+..|..++.+++++|+|+|+++- ..+.+....+..+.+....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 577777777888889999999999999999999999999999999999863 4577888888999888777
Q ss_pred CCCcEEEEeeCCCcc
Q 030848 124 QGAPLLILANKQDLP 138 (170)
Q Consensus 124 ~~~~ii~v~nK~D~~ 138 (170)
.+.|+++++||.|+.
T Consensus 227 ~~~pill~~NK~D~f 241 (317)
T cd00066 227 ANTSIILFLNKKDLF 241 (317)
T ss_pred cCCCEEEEccChHHH
Confidence 889999999999964
No 264
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.55 E-value=9.3e-14 Score=105.54 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=74.8
Q ss_pred CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCc----------ccHHHHHHHHHHHHcCCCC
Q 030848 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNEDL 123 (170)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~ 123 (170)
+|++.....+...+..+.+||++|+...+..|..++.+++++|+|+|+++- ..+++....++.+.+....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 577777777888888999999999999999999999999999999999863 4578888899999887777
Q ss_pred CCCcEEEEeeCCCcc
Q 030848 124 QGAPLLILANKQDLP 138 (170)
Q Consensus 124 ~~~~ii~v~nK~D~~ 138 (170)
.+.|+++++||.|+.
T Consensus 250 ~~~piil~~NK~D~~ 264 (342)
T smart00275 250 ANTSIILFLNKIDLF 264 (342)
T ss_pred cCCcEEEEEecHHhH
Confidence 889999999999985
No 265
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.54 E-value=1.6e-13 Score=99.93 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=74.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch--h--------
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--S-------- 83 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-------- 83 (170)
....++|+++|.+|+|||||+|+|.+......+ .....|...........+..+.+|||||-.+.. .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~---~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS---AFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC---CCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 356799999999999999999999873211111 111223333344455677889999999944331 1
Q ss_pred hHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccc
Q 030848 84 IWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPDA 140 (170)
Q Consensus 84 ~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~~ 140 (170)
....++. ..+++++|..++....-......+..+....+. -..++++|.||+|...+
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 1222332 468888887666543222222333333332221 12579999999998653
No 266
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=112.11 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=103.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC-------CcchhhH--H
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ-------PGLRSIW--E 86 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~~--~ 86 (170)
+.-.++++|.|++|||||+|.+.....++.. ..+.|..+....++++-..++++||||- .+..++. -
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqp----YaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQP----YAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCC----cccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 4568999999999999999999764444442 2334555556677788888999999991 1111111 1
Q ss_pred HHhhccCEEEEEEeCCCc--ccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848 87 KYYEEAHAVVFVIDAACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
...+--.+|||++|++.. .+.++....++.+.-.. .+.|+|+|+||+|+.+.++.++..+.+-....+.-.+++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~ 320 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQ 320 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEE
Confidence 223444689999999855 46677778888886554 48899999999999987766655543333333445588999
Q ss_pred eeccC
Q 030848 165 VSGYD 169 (170)
Q Consensus 165 ~Sa~~ 169 (170)
+|+.+
T Consensus 321 tS~~~ 325 (620)
T KOG1490|consen 321 TSCVQ 325 (620)
T ss_pred ecccc
Confidence 98764
No 267
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.54 E-value=6.2e-14 Score=106.38 Aligned_cols=115 Identities=17% Similarity=0.293 Sum_probs=64.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHH-----h
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY-----Y 89 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~ 89 (170)
...++|+|+|++|+|||||+|++++...+..+........|+.....+..-+-.++.+||+||--........| +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 36789999999999999999999886565555555555455444444443444579999999932221122222 4
Q ss_pred hccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848 90 EEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDL 137 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~ 137 (170)
...|.+|++.+-. |... ......+.. .+.|+.+|-||+|.
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQR----MGKKFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHH----TT-EEEEEE--HHH
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHH----cCCcEEEEEecccc
Confidence 6789888887533 4333 333334433 47789999999996
No 268
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.54 E-value=1.7e-13 Score=97.84 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------cchhhH----H
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIW----E 86 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~----~ 86 (170)
++|+++|.+|+||||++|.|++. ............|..+........+..+.++||||-- +..... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~--~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGK--EVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS--S-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc--cceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999872 2222222222335555566668889999999999921 111111 1
Q ss_pred HHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848 87 KYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~ 142 (170)
......|++|+|++++... .......++..++... -...+++++|..|...+..
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTT
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhcccccccc
Confidence 2235689999999988221 1233333444444321 1246899999998877554
No 269
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=4.7e-14 Score=101.61 Aligned_cols=121 Identities=21% Similarity=0.331 Sum_probs=78.5
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHh-hcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-------chhh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKS-VYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSI 84 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~ 84 (170)
..++.++++++|.+|+||||++|+++. ....+..... ...++... ...+....+.+||+||-.+ ++..
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~-~t~~~~~~---~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~ 110 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV-GTDITTRL---RLSYDGENLVLWDTPGLGDGKDKDAEHRQL 110 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeeccc-CCCchhhH---HhhccccceEEecCCCcccchhhhHHHHHH
Confidence 356889999999999999999999984 0011110100 11111111 1223446799999999333 5666
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
...++.+.|.+++++++.++.--.+...+..-+... -+.++++++|++|...+
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~---~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG---LDKRVLFVVTQADRAEP 163 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc---cCceeEEEEehhhhhcc
Confidence 677889999999999999876443333333333332 24789999999998654
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.52 E-value=2.2e-13 Score=112.56 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=84.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCC--------CCCC----cccCCcceeEE----EEEecCeEEEEEEcCCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------LPPD----RIVPTVGLNIG----RIEVSNSKLVFWDLGGQ 78 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------~~~~----~~~~~~~~~~~----~~~~~~~~~~i~D~~G~ 78 (170)
....+|+++|+.++|||||++++......... .... ....|+..... .++..+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34568999999999999999999642111100 0000 01123332221 24556788999999999
Q ss_pred CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc---cCCHHHHHhHh
Q 030848 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---AVSADELARYL 150 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~---~~~~~~~~~~~ 150 (170)
..+.......++.+|++|+|+|+.+.-..+. ...+..... .+.|.++++||+|... ....+++.+.+
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~~~~~~~~~~~~~~~ 166 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLINELKLTPQELQERF 166 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhcccchhcCCHHHHHHHH
Confidence 9888777888899999999999986433222 222222222 3567889999999864 23444444444
No 271
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.52 E-value=2.6e-13 Score=97.67 Aligned_cols=141 Identities=20% Similarity=0.211 Sum_probs=83.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
.+...|+++|.+|+|||||++.+........ .....+ .+......+.++.++||||.- ..+ ....+.+|+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~------~~~~~g-~i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDv 106 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN------ISDIKG-PITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADL 106 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCc------cccccc-cEEEEecCCceEEEEeCCchH--HHH-HHHHHhcCE
Confidence 4557799999999999999999976321110 101111 111233467889999999854 333 334588999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccC-CHHHHHhHhCcccc--ccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAV-SADELARYLDLKKL--DERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g 170 (170)
+++|+|++....... ...+..+ .. .+.| +++++||+|+.+.. ..++..+.++.... .....+++.+||++.
T Consensus 107 VllviDa~~~~~~~~-~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 107 VLLLIDASFGFEMET-FEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEEecCcCCCHHH-HHHHHHH-HH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 999999986544322 2222222 22 2445 55699999997432 23333333332111 123468999998763
No 272
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.8e-13 Score=105.25 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=89.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-ch--------hhH
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-LR--------SIW 85 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~--------~~~ 85 (170)
+..+.|+++|.|++|||||+|.|.+....+....+......+.. .++.++.++.+.||+|-.+ -. ...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea---~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEA---QVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhhee---EeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence 45689999999999999999999763222222222222222222 4778999999999999433 11 111
Q ss_pred HHHhhccCEEEEEEeCC--CcccHHHHHHHHHHHHcC-----CCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccc
Q 030848 86 EKYYEEAHAVVFVIDAA--CPSRFEDSKTALEKVLRN-----EDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLD 156 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~ 156 (170)
..-+..+|++++|+|+. +-++...+...+...... ....+.|++++.||.|+... ........+.+. ...
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~ 421 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGR 421 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccC
Confidence 22357899999999994 333333333333333211 11245799999999999875 222223333332 111
Q ss_pred cceeEEEeeeccCC
Q 030848 157 ERVCMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~~~~~~~Sa~~g 170 (170)
.......++|++++
T Consensus 422 ~~~~i~~~vs~~tk 435 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTK 435 (531)
T ss_pred cccceEEEeeechh
Confidence 22233444777654
No 273
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=1.2e-13 Score=105.91 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=100.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CC----------cccCCcceeEEEE-----EecCeEEEEEEcCCCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PD----------RIVPTVGLNIGRI-----EVSNSKLVFWDLGGQP 79 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~----------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~ 79 (170)
+.-+..++-+-..|||||..|+...+....... .. +..-|+....... +++...+.++||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 334688999999999999999966433322210 00 1112333333332 3355789999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH---HHHHhHhCccccc
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLD 156 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~---~~~~~~~~~~~~~ 156 (170)
.|.-..++.+..|.++|+|+|+++.-.-+.+...+..+- .+..++-|+||+||+.+... .++++.+.
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iG----- 157 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIG----- 157 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhC-----
Confidence 998888888899999999999998755455555555553 35679999999999986543 34444444
Q ss_pred cceeEEEeeeccCC
Q 030848 157 ERVCMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~~~~~~~Sa~~g 170 (170)
......+.+|||+|
T Consensus 158 id~~dav~~SAKtG 171 (603)
T COG0481 158 IDASDAVLVSAKTG 171 (603)
T ss_pred CCcchheeEecccC
Confidence 34446788999997
No 274
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1e-13 Score=102.89 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=102.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhccc------------CC--CCCCC---------------cccCCcceeEEEEE
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN------------VE--GLPPD---------------RIVPTVGLNIGRIE 64 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~------------~~--~~~~~---------------~~~~~~~~~~~~~~ 64 (170)
.+..+|++-+|...-|||||+-|++..... .. +.... +..-|+++.+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 467799999999999999999998432111 11 11101 11236666677777
Q ss_pred ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCC
Q 030848 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVS 142 (170)
Q Consensus 65 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~ 142 (170)
-...+|.+-||||++++.+-......-||.+|+++|+... ..+.-.-...+...++ =..+++..||+||.+ +.-
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHH
Confidence 7889999999999999988777778999999999999743 2111112222222222 245899999999987 334
Q ss_pred HHHHHhHhC--ccccccceeEEEeeeccCC
Q 030848 143 ADELARYLD--LKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 143 ~~~~~~~~~--~~~~~~~~~~~~~~Sa~~g 170 (170)
.+++.+.+. ...+......++|+||..|
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~G 188 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLG 188 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccC
Confidence 444444433 1223344558999999876
No 275
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=5.9e-14 Score=102.99 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=99.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCC------------CcccCCccee---EE----EEE------ecCeE
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP------------DRIVPTVGLN---IG----RIE------VSNSK 69 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~------------~~~~~~~~~~---~~----~~~------~~~~~ 69 (170)
+++++|.++|+...||||++.++.+.+.+...... ........+. .+ .+. ---..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 68999999999999999999999775544322100 0000000000 00 000 01246
Q ss_pred EEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----HHH
Q 030848 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADE 145 (170)
Q Consensus 70 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~~~ 145 (170)
+.++|.||++-+..+..+...-.|++|+|++++.++..-...+.+..+-- . .-..++++-||+|+..++. -++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI-i--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI-I--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh-h--ccceEEEEecccceecHHHHHHHHHH
Confidence 99999999999888777777788999999999988776555555544422 1 1345899999999987443 333
Q ss_pred HHhHhCccccccceeEEEeeeccCC
Q 030848 146 LARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+.++.+ +.-.++.|++++||..+
T Consensus 165 Ik~Fvk--Gt~Ae~aPIIPiSA~~~ 187 (415)
T COG5257 165 IKEFVK--GTVAENAPIIPISAQHK 187 (415)
T ss_pred HHHHhc--ccccCCCceeeehhhhc
Confidence 444443 33456789999999764
No 276
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-12 Score=95.91 Aligned_cols=116 Identities=23% Similarity=0.297 Sum_probs=73.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc------c------h
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG------L------R 82 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~------~ 82 (170)
++.++|+|+|+|++|||||.|.+.+. .+... ..+.-.|.......+.-...++.++||||-.. . .
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~--kv~~v-S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQ--KVSAV-SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCC--ccccc-cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 45689999999999999999999762 11111 11121222222334666778999999999211 1 1
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+-....+..+|.+++|+|+++....- .+......+ .+.|-+++.||.|...
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLK 199 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcch
Confidence 11122357899999999999754332 122222222 4677899999999754
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=2.4e-12 Score=95.56 Aligned_cols=123 Identities=7% Similarity=-0.024 Sum_probs=71.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh---hHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~ 90 (170)
....++|+++|.+|+||||++|+|.+......+... ..+...........+..+.+|||||-.+... .....++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~---s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ---SEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC---CcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 356789999999999999999999873211111111 1111111223345678999999999554321 1111222
Q ss_pred ------ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc
Q 030848 91 ------EAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD 139 (170)
Q Consensus 91 ------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~ 139 (170)
..|++|||..++.....+.....+..+....+ .-..++++++|+.|..+
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 58999999766543222222333333333222 12357899999999764
No 278
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.48 E-value=4.6e-16 Score=105.44 Aligned_cols=145 Identities=21% Similarity=0.340 Sum_probs=106.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
.-.+++|+|..|+||++++.+... ......+..+++..+- .... .-.++.+||..||+++..+.--+++
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~------~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyk 97 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVH------QNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYK 97 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHH------HHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEec
Confidence 446899999999999999999865 2223334445444322 1222 2256899999999999988888999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCC---CcEEEEeeCCCccccCCH---HHHHhHhCccccccceeEEEe
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG---APLLILANKQDLPDAVSA---DELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~ii~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 164 (170)
.+++..+|||++...+|+....|...+-.....++ .|+++..||||....... ....++.+..++ ....+
T Consensus 98 ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf----~gwte 173 (229)
T KOG4423|consen 98 EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF----EGWTE 173 (229)
T ss_pred CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc----cceee
Confidence 99999999999999999999999998876655443 688999999999763322 344444443333 36788
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+|+|.+
T Consensus 174 ts~Ken 179 (229)
T KOG4423|consen 174 TSAKEN 179 (229)
T ss_pred eccccc
Confidence 888753
No 279
>PRK12740 elongation factor G; Reviewed
Probab=99.44 E-value=3.1e-12 Score=105.38 Aligned_cols=114 Identities=22% Similarity=0.191 Sum_probs=80.8
Q ss_pred EcCCCCChHHHHHHHHhhcccCCC--------CCCC------cccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHH
Q 030848 23 LGIDKAGKTTLLEKLKSVYSNVEG--------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 23 vG~~~~GKSsl~~~l~~~~~~~~~--------~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 88 (170)
+|+.++|||||++++......... ...+ ....|+......+.+.+..+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999553222111 0000 12234555555677888999999999998887777888
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
++.+|++++|+|+++....+.. ..+..+.. .+.|+++++||+|+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGAD 128 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 8999999999999876554432 33333322 367999999999997643
No 280
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.43 E-value=3.6e-12 Score=87.56 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=44.4
Q ss_pred EEEEEEcCCC----CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848 69 KLVFWDLGGQ----PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (170)
Q Consensus 69 ~~~i~D~~G~----~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~ 135 (170)
.+.|+||||- ......+..+++.+|++|+|.++++..+......+...... ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 6999999993 22336778888999999999999986665544444444432 344589999984
No 281
>PTZ00258 GTP-binding protein; Provisional
Probab=99.42 E-value=4.7e-12 Score=97.14 Aligned_cols=86 Identities=21% Similarity=0.289 Sum_probs=57.6
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-----------------CeEEEEEEc
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDL 75 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~D~ 75 (170)
.....++|+++|.|++|||||+|++.+......+....+..+..+. +.+. +.++.++|+
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~----v~~~d~r~~~l~~~~~~~~~~~aqi~lvDt 92 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR----VNVPDERFDWLCKHFKPKSIVPAQLDITDI 92 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE----EecccchhhHHHHHcCCcccCCCCeEEEEC
Confidence 3467789999999999999999999764333333333333333322 3332 345999999
Q ss_pred CCCC-------cchhhHHHHhhccCEEEEEEeCC
Q 030848 76 GGQP-------GLRSIWEKYYEEAHAVVFVIDAA 102 (170)
Q Consensus 76 ~G~~-------~~~~~~~~~~~~~~~~i~v~d~~ 102 (170)
||-. .+...+...++++|++++|+|..
T Consensus 93 pGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 93 AGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9922 23334455678999999999974
No 282
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.42 E-value=6.6e-12 Score=104.14 Aligned_cols=119 Identities=17% Similarity=0.094 Sum_probs=77.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC----------CCcc--cCCcceeEEEEE----ecCeEEEEEEcCCCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRI--VPTVGLNIGRIE----VSNSKLVFWDLGGQP 79 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~----~~~~~~~i~D~~G~~ 79 (170)
+..+|+++|+.++|||||+.++........... ..+. .-|+......+. ..+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 344799999999999999999965322211100 0000 012222211222 246779999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
.+.......++.+|++|+|+|+...-..+ ....+..... .+.|.++++||+|...
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 98888888889999999999987653322 3333333322 2456799999999864
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=6.1e-12 Score=105.59 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=79.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC----------CCccc--CCcceeEEEEEe----------------c
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRIV--PTVGLNIGRIEV----------------S 66 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~----------------~ 66 (170)
....+|+++|+.++|||||++++........... ..+.. -|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3456899999999999999999965332111110 00000 121211112222 2
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
+..+.++||||+.++.......++.+|++|+|+|+...-..+. ...+..... .+.|+++++||+|.+
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 5678999999999998888888899999999999987644332 333334333 478999999999997
No 284
>PTZ00416 elongation factor 2; Provisional
Probab=99.40 E-value=4.1e-12 Score=106.50 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=78.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCC----C------CCCccc--CCcceeEEEEEec----------CeEEEEE
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----L------PPDRIV--PTVGLNIGRIEVS----------NSKLVFW 73 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----~------~~~~~~--~~~~~~~~~~~~~----------~~~~~i~ 73 (170)
...+|+++|+.++|||||++++......... . ...+.. .|+......+.+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 4458999999999999999999753221111 0 000011 1111111122222 4679999
Q ss_pred EcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 74 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
||||+.++.......++.+|++|+|+|+...-..+ ....+..+.. .+.|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 99999988877788889999999999998764433 2334444433 367999999999997
No 285
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.40 E-value=4.4e-13 Score=97.04 Aligned_cols=70 Identities=20% Similarity=0.129 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCcchhhHHHHh--------hccCEEEEEEeCCCcccHHHHHHH-HHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 69 KLVFWDLGGQPGLRSIWEKYY--------EEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 69 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
.+.++|||||.++...+...- ...-++++++|+.....-...... +...... -..+.|.+.++||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 799999999999876655443 234578889988644332222111 1111111 114789999999999976
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.39 E-value=1e-11 Score=95.32 Aligned_cols=149 Identities=18% Similarity=0.227 Sum_probs=101.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCC--------CCCcccCCccee----EEEEEecCeEEEEEEcCCCCcchhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--------PPDRIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRSI 84 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~i~D~~G~~~~~~~ 84 (170)
--+|.++-+...|||||+..++......... .+......-+++ -..+.+++..+.|+||||+..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3479999999999999999996532111110 011111111222 2257788999999999999999999
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC---cccc--ccce
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD---LKKL--DERV 159 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~---~~~~--~~~~ 159 (170)
..+.+.=+|++++++|+.....-+ .+......+. .+.+-|+|+||+|.+.+-+.+-+.+.+. .... +...
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999998765433 3334444433 2555688999999998666555555544 2222 3446
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
.|++..||+.|
T Consensus 160 FPivYAS~~~G 170 (603)
T COG1217 160 FPIVYASARNG 170 (603)
T ss_pred CcEEEeeccCc
Confidence 78888899876
No 287
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=4.1e-12 Score=92.46 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=105.8
Q ss_pred HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccC----------CCCCCCcccCCcceeEEEE--EecCeEEEEEE
Q 030848 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNV----------EGLPPDRIVPTVGLNIGRI--EVSNSKLVFWD 74 (170)
Q Consensus 7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D 74 (170)
+.|.+ +++.++|..+|+.+.|||||..+|....... .+..++....-+.++..++ ...+..+..+|
T Consensus 4 ~kf~r--~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVD 81 (394)
T COG0050 4 EKFER--TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVD 81 (394)
T ss_pred hhhcC--CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEecc
Confidence 34444 7899999999999999999999985433321 1112222223333333333 44578899999
Q ss_pred cCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-----CCHHHHHhH
Q 030848 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-----VSADELARY 149 (170)
Q Consensus 75 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-----~~~~~~~~~ 149 (170)
+||+..+..-......+.|+.|+|+.+++...-+. ++.+.-. .+. .-..+++++||+|+.+. .-..|.++.
T Consensus 82 cPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLla-rqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 82 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLA-RQV--GVPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred CCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhh-hhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 99999887766666678899999999987654332 1111111 111 23468889999999872 234567777
Q ss_pred hCccccccceeEEEeeeccC
Q 030848 150 LDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 150 ~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+..+.+.....|++.-||..
T Consensus 158 Ls~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 158 LSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHcCCCCCCcceeechhhh
Confidence 77888888899999888753
No 288
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.38 E-value=7.2e-12 Score=105.84 Aligned_cols=105 Identities=25% Similarity=0.300 Sum_probs=69.6
Q ss_pred CChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----------------cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 28 AGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----------------SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 28 ~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
++||||+.+|++ +++.........+.++......+. +...+.+|||||++.+..+....++.
T Consensus 472 ~~KTtLLD~iR~--t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~ 549 (1049)
T PRK14845 472 VHNTTLLDKIRK--TRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSL 549 (1049)
T ss_pred cccccHHHHHhC--CCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhccc
Confidence 349999999987 555544444444444443332221 11238999999999998888888889
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+|++++|+|+++.-.-+ ....+..+.. .+.|+++++||+|+.+
T Consensus 550 aDivlLVVDa~~Gi~~q-T~e~I~~lk~----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 550 ADLAVLVVDINEGFKPQ-TIEAINILRQ----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred CCEEEEEEECcccCCHh-HHHHHHHHHH----cCCCEEEEEECCCCcc
Confidence 99999999998632211 1222222222 3579999999999964
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.37 E-value=2.3e-11 Score=92.38 Aligned_cols=81 Identities=27% Similarity=0.454 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-----------------eEEEEEEcCCCC-
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP- 79 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~D~~G~~- 79 (170)
++|+++|.|++|||||+|++.+......+....+..|..+. +.+.+ ..+.++|+||-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~----~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~ 78 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGV----VPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVK 78 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEE----EEeccccchhhHHhcCCccccCceEEEEECCCCCC
Confidence 68999999999999999999874433333333333333322 22222 359999999922
Q ss_pred ------cchhhHHHHhhccCEEEEEEeCC
Q 030848 80 ------GLRSIWEKYYEEAHAVVFVIDAA 102 (170)
Q Consensus 80 ------~~~~~~~~~~~~~~~~i~v~d~~ 102 (170)
.+...+...++++|++++|+|+.
T Consensus 79 ~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 79 GASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12234445578999999999984
No 290
>PRK13768 GTPase; Provisional
Probab=99.37 E-value=6.2e-12 Score=92.02 Aligned_cols=83 Identities=25% Similarity=0.263 Sum_probs=50.9
Q ss_pred eEEEEEEcCCCCcch---hhHHHHh---hc--cCEEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 68 SKLVFWDLGGQPGLR---SIWEKYY---EE--AHAVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~---~~~~~~~---~~--~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
..+.+||+||+.+.. ..+..+. .. ++++++|+|++.......... ++....... ..+.|+++++||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 369999999976643 2332232 22 789999999976544332222 211211111 1478999999999998
Q ss_pred ccCCHHHHHhHhC
Q 030848 139 DAVSADELARYLD 151 (170)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (170)
+....++..+.+.
T Consensus 176 ~~~~~~~~~~~l~ 188 (253)
T PRK13768 176 SEEELERILKWLE 188 (253)
T ss_pred CchhHHHHHHHHh
Confidence 7666555555444
No 291
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.6e-12 Score=100.67 Aligned_cols=157 Identities=21% Similarity=0.251 Sum_probs=101.0
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCC--------------C-----------CCcccC--CcceeEEEEE
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--------------P-----------PDRIVP--TVGLNIGRIE 64 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--------------~-----------~~~~~~--~~~~~~~~~~ 64 (170)
...+..+.++++|+..+|||||+-+++....++... . .++... |.......++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 344577899999999999999998884432222211 1 111111 2222222344
Q ss_pred ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc---HH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---FE--DSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 65 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
-....++|+|.||+..|..-.......+|+.++|+|++-... |+ .-..-+..+++.++ -..++|++||+|+.+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVS 329 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccC
Confidence 456679999999988887766666788999999999974321 11 11111223333333 456899999999986
Q ss_pred --cCCHHHHHhHhC-----ccccccceeEEEeeeccCC
Q 030848 140 --AVSADELARYLD-----LKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 140 --~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~g 170 (170)
+.-.+++...+. ..++.+..+.|+|||+.+|
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~G 367 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSG 367 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccC
Confidence 444555555444 4556677789999999987
No 292
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.35 E-value=1.3e-11 Score=91.39 Aligned_cols=129 Identities=17% Similarity=0.268 Sum_probs=69.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCC----CCCcccCCcceeEEEEEe----cCeEEEEEEcCCC-Ccc------
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQ-PGL------ 81 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~-~~~------ 81 (170)
.++|+|+|.+|+|||||+|.|.+..-..... .......+..+....... ...++.++||||- +..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5899999999999999999997632211110 011122333333332222 2357999999991 111
Q ss_pred -------hhhHHHHh-------------hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 82 -------RSIWEKYY-------------EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 82 -------~~~~~~~~-------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
...+..++ .+.|++||+++++...--..-.+.+..+ . ..+++|-|+.|+|...+.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-c----ccccEEeEEecccccCHH
Confidence 11111121 2489999999987543222222333344 2 467899999999987654
Q ss_pred CHHHHHhHh
Q 030848 142 SADELARYL 150 (170)
Q Consensus 142 ~~~~~~~~~ 150 (170)
......+.+
T Consensus 159 el~~~k~~i 167 (281)
T PF00735_consen 159 ELQAFKQRI 167 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 293
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-11 Score=92.85 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=76.1
Q ss_pred cCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCC
Q 030848 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNED 122 (170)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 122 (170)
.+|.++....+..++.++.++|++||..-+.-|..++.+++++|+|++++. .....+....+..+.+..+
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 368888888999999999999999999989999999999999999998863 1234567788999999999
Q ss_pred CCCCcEEEEeeCCCccc
Q 030848 123 LQGAPLLILANKQDLPD 139 (170)
Q Consensus 123 ~~~~~ii~v~nK~D~~~ 139 (170)
..+.++++++||.|+..
T Consensus 260 F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFE 276 (354)
T ss_pred cccCcEEEEeecHHHHH
Confidence 89999999999999843
No 294
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=2.6e-12 Score=90.46 Aligned_cols=123 Identities=20% Similarity=0.315 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCcchh-----hHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRS-----IWEKYYEE 91 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~-----~~~~~~~~ 91 (170)
-||+++|.+||||||+=..+..... .........|+++...++...+ .-+.+||.+|++.+.. .....++.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~---a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYI---ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhh---hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 4799999999999999766653111 1112233456666555554443 6799999999985532 33456789
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHH---HHHcCCCCCCCcEEEEeeCCCccccCCHHH
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALE---KVLRNEDLQGAPLLILANKQDLPDAVSADE 145 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~ 145 (170)
.+++++|||++..+...+...... .+... .+...+++.++|+|+......++
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~ 136 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDAREL 136 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHH
Confidence 999999999997765444443333 33332 26788999999999987554443
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.32 E-value=8.8e-12 Score=93.96 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=81.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCC------CCCCCcc----------------cCCcceeEEE---------
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE------GLPPDRI----------------VPTVGLNIGR--------- 62 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~~~~~~~----------------~~~~~~~~~~--------- 62 (170)
..+...|.++|++|+|||||++.+........ ...+... ...-......
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 45678999999999999999998844322110 0011000 0000000100
Q ss_pred -----------EEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEE
Q 030848 63 -----------IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131 (170)
Q Consensus 63 -----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 131 (170)
.+..+..+.++||+|...-... ....+|.++++.++.....++.... .++.. .-++|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~------aDIiV 200 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL------ADLIV 200 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh------hheEE
Confidence 1123568999999995532222 3567999999986554444433322 12222 13899
Q ss_pred eeCCCccccCCHH----HHHhHhCccc--cccceeEEEeeeccCC
Q 030848 132 ANKQDLPDAVSAD----ELARYLDLKK--LDERVCMFEAVSGYDG 170 (170)
Q Consensus 132 ~nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~g 170 (170)
+||+|+......+ ++.+.+.... ...+..|++.+||++|
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g 245 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG 245 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCC
Confidence 9999997644333 3333333211 1123468999999986
No 296
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.31 E-value=5.6e-11 Score=95.45 Aligned_cols=121 Identities=13% Similarity=0.064 Sum_probs=72.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc----------hhhHH
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------RSIWE 86 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~ 86 (170)
.++|+++|.+|+||||++|.|.+.. .... ......|+..........+..+.++||||-... .....
T Consensus 118 slrIvLVGKTGVGKSSLINSILGek--vf~v-ss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEV--KFST-DAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccc--cccc-cCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 4689999999999999999998731 1111 111122333322233456788999999993321 11222
Q ss_pred HHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccc
Q 030848 87 KYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPDA 140 (170)
Q Consensus 87 ~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~~ 140 (170)
.++. .+|++|+|..++......+....+..+...++. -...+||++|+.|..++
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 3444 479999998876443322333444444333331 12568999999998763
No 297
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.30 E-value=9.9e-12 Score=89.49 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=88.9
Q ss_pred hhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCC------CCCCcc----------------cCCcceeEE
Q 030848 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LPPDRI----------------VPTVGLNIG 61 (170)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~------~~~~~~----------------~~~~~~~~~ 61 (170)
++.+++++ ..+..+|.+.|+||+|||||++.+......... ..+.+. ...-+..+.
T Consensus 18 ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIR 95 (266)
T PF03308_consen 18 LLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIR 95 (266)
T ss_dssp HHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEE
T ss_pred HHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEe
Confidence 45666655 456789999999999999999999432221100 001100 011122222
Q ss_pred EEE--------------------ecCeEEEEEEcCC--CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHc
Q 030848 62 RIE--------------------VSNSKLVFWDLGG--QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119 (170)
Q Consensus 62 ~~~--------------------~~~~~~~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 119 (170)
... ..+..+.|+.|.| |.+.. ...-+|.+++|..+...+..+..+..+.++..
T Consensus 96 S~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD 170 (266)
T PF03308_consen 96 SMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD 170 (266)
T ss_dssp EE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S
T ss_pred ecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc
Confidence 211 1256899999998 33332 23778999999999888888877777777733
Q ss_pred CCCCCCCcEEEEeeCCCccccC-CHHHHHhHhCcc--ccccceeEEEeeeccCC
Q 030848 120 NEDLQGAPLLILANKQDLPDAV-SADELARYLDLK--KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 120 ~~~~~~~~ii~v~nK~D~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g 170 (170)
++|+||+|.+... ...++...+... ....+.+|++.+||.+|
T Consensus 171 ---------i~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~ 215 (266)
T PF03308_consen 171 ---------IFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEG 215 (266)
T ss_dssp ---------EEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTT
T ss_pred ---------EEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCC
Confidence 9999999977633 344445444422 23456789999999875
No 298
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.4e-11 Score=88.95 Aligned_cols=149 Identities=19% Similarity=0.181 Sum_probs=95.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccC-CCC--CCCcccCCcceeEEEEEe---------cCeEEEEEEcCCCCcch
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGL--PPDRIVPTVGLNIGRIEV---------SNSKLVFWDLGGQPGLR 82 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~i~D~~G~~~~~ 82 (170)
..++++.+.|+..||||||..++....+-. .+. .+.+...|.++.+..+.. +..++.++|+||+..+-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 356899999999999999999995432211 111 122233344444443322 34678999999999988
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhC----cc
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLD----LK 153 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~----~~ 153 (170)
+.........|..++|+|+....--+.+ -..+.++.. ...++|+||+|..++..+ ++....++ ..
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 8777777889999999999754322222 122223322 347889999998775433 33333333 22
Q ss_pred ccccceeEEEeeeccCC
Q 030848 154 KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 154 ~~~~~~~~~~~~Sa~~g 170 (170)
. ...+.|++++||+.|
T Consensus 159 ~-f~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 159 G-FDGNSPIVEVSAADG 174 (522)
T ss_pred C-cCCCCceeEEecCCC
Confidence 2 345689999999876
No 299
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3e-11 Score=98.69 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=91.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCC--CCC------C------cccCCcceeEEEEEecC-eEEEEEEcCCCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPP------D------RIVPTVGLNIGRIEVSN-SKLVFWDLGGQP 79 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--~~~------~------~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~ 79 (170)
....+|.++|+.++||||+..+++.....+.. ... + ...-|+......+.+++ ..++++||||+-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 35568999999999999999999543222111 111 0 11123333344566774 999999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc---CCHHHHHhHhC
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELARYLD 151 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~---~~~~~~~~~~~ 151 (170)
+|.....+.++-+|++++|+|+...-..+. ...|.+... .+.|.++++||+|.... ...+++.+.+.
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 999999999999999999999986533332 233333333 58899999999998763 45556666665
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.28 E-value=1.9e-10 Score=87.98 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=71.3
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhh--cccC-----------------CCCCCCc----ccCCcceeEEEEEecCeE
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSV--YSNV-----------------EGLPPDR----IVPTVGLNIGRIEVSNSK 69 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~--~~~~-----------------~~~~~~~----~~~~~~~~~~~~~~~~~~ 69 (170)
++..++-|.++|+.++|||||+|++.+. -++. .+.+..+ +-|.-+......+.-..+
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 3557899999999999999999999664 1111 1111111 112223332233334578
Q ss_pred EEEEEcCCC--------Ccchh----------------------hHHHHhhccCEEEEEE-eCC----CcccH-HHHHHH
Q 030848 70 LVFWDLGGQ--------PGLRS----------------------IWEKYYEEAHAVVFVI-DAA----CPSRF-EDSKTA 113 (170)
Q Consensus 70 ~~i~D~~G~--------~~~~~----------------------~~~~~~~~~~~~i~v~-d~~----~~~~~-~~~~~~ 113 (170)
+.++||+|- .+... +..-.-..++..|+|. |.+ ..+.+ +.-..+
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 999999991 11111 2222223789888888 663 11122 333444
Q ss_pred HHHHHcCCCCCCCcEEEEeeCCCc
Q 030848 114 LEKVLRNEDLQGAPLLILANKQDL 137 (170)
Q Consensus 114 ~~~~~~~~~~~~~~ii~v~nK~D~ 137 (170)
+.++.. .+.|+++++||.|-
T Consensus 173 i~eLk~----~~kPfiivlN~~dp 192 (492)
T TIGR02836 173 IEELKE----LNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHh----cCCCEEEEEECcCC
Confidence 445443 58999999999993
No 301
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.26 E-value=8.1e-11 Score=91.06 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE--------------------ecCeEEEEEEcCC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--------------------VSNSKLVFWDLGG 77 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~D~~G 77 (170)
++|+++|.+++|||||+|++.+.........+.+..|+.+....... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999874443333344444555554322100 1235689999999
Q ss_pred C----Cc---chhhHHHHhhccCEEEEEEeCC
Q 030848 78 Q----PG---LRSIWEKYYEEAHAVVFVIDAA 102 (170)
Q Consensus 78 ~----~~---~~~~~~~~~~~~~~~i~v~d~~ 102 (170)
- .. +...+...++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 22 2223444489999999999997
No 302
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.7e-10 Score=86.83 Aligned_cols=86 Identities=23% Similarity=0.391 Sum_probs=66.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE----------E----ecCeEEEEEEcCC-----
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI----------E----VSNSKLVFWDLGG----- 77 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~i~D~~G----- 77 (170)
.+++.+||-|++|||||+|++.....+..++++.+..|+.+...... . .....+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999987665566777777777776654321 0 1134699999999
Q ss_pred --CCcchhhHHHHhhccCEEEEEEeCC
Q 030848 78 --QPGLRSIWEKYYEEAHAVVFVIDAA 102 (170)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~i~v~d~~ 102 (170)
.+.+...+...+|++|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 5667777888889999999999875
No 303
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.20 E-value=2.6e-10 Score=85.44 Aligned_cols=131 Identities=18% Similarity=0.310 Sum_probs=79.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhh--cccC--CCCCCCcccCCcceeEEEEEec----CeEEEEEEcCCC-C------
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSV--YSNV--EGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQ-P------ 79 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~D~~G~-~------ 79 (170)
--.++|.++|+.|+|||||+|.+.+. .... .+.......+++.+......+. ..++.++||||- +
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 45689999999999999999999763 1111 1111222445666655544432 357999999991 1
Q ss_pred -------cchhhHHHHhh--------------ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 80 -------GLRSIWEKYYE--------------EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 80 -------~~~~~~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
.+...+..|+. ++|++||.+.++...--.--...+.++. ..+.+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS-----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh-----cccCeeeeeeccccC
Confidence 11222233331 4899999998774332222233334442 356799999999987
Q ss_pred ccCCHHHHHhHh
Q 030848 139 DAVSADELARYL 150 (170)
Q Consensus 139 ~~~~~~~~~~~~ 150 (170)
....+.+..+.+
T Consensus 176 T~~El~~~K~~I 187 (373)
T COG5019 176 TDDELAEFKERI 187 (373)
T ss_pred CHHHHHHHHHHH
Confidence 655444444333
No 304
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.19 E-value=3.2e-10 Score=82.01 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=48.3
Q ss_pred eEEEEEEcCCCCc-------------chhhHHHHhhc-cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848 68 SKLVFWDLGGQPG-------------LRSIWEKYYEE-AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133 (170)
Q Consensus 68 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n 133 (170)
..+.++||||-.. ...+...|+++ .+.+++|+|++..-.-+........+ .....|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence 4799999999421 22345567774 45888999887543322322333222 225789999999
Q ss_pred CCCccccCCHHHHHhHhC
Q 030848 134 KQDLPDAVSADELARYLD 151 (170)
Q Consensus 134 K~D~~~~~~~~~~~~~~~ 151 (170)
|.|..++... ....++
T Consensus 201 K~D~~~~~~~--~~~~~~ 216 (240)
T smart00053 201 KLDLMDEGTD--ARDILE 216 (240)
T ss_pred CCCCCCccHH--HHHHHh
Confidence 9999864432 444444
No 305
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.18 E-value=5e-11 Score=77.57 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCccc-CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 96 (170)
+|++++|..|+|||+++.++.. ........ ++.+ +......+.+..+.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~------~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQ------FPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhc------CCccccCceehhh-----------------------hhhccccccCCCCEEE
Confidence 4899999999999999999954 22221111 2222 2223344567789999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 97 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+|++.++..+++.. |...+... ...+.|.++++||.|+..
T Consensus 52 ~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 52 QCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE 91 (124)
T ss_pred EEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence 99999998887655 55444433 235688999999999843
No 306
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.18 E-value=1.1e-10 Score=74.75 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=80.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----CCcchhhHHHHhhccCE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~~~ 94 (170)
|+.+||..|.|||||++.+.+. ...+..|..+.+... -.+|||| +............++|+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~--------~~lykKTQAve~~d~-------~~IDTPGEy~~~~~~Y~aL~tt~~dadv 67 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGN--------DTLYKKTQAVEFNDK-------GDIDTPGEYFEHPRWYHALITTLQDADV 67 (148)
T ss_pred eeEEecccccCchhHHHHhhcc--------hhhhcccceeeccCc-------cccCCchhhhhhhHHHHHHHHHhhccce
Confidence 7899999999999999999761 112233433332111 1469999 34444445555689999
Q ss_pred EEEEEeCCCcccH-HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 95 VVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 95 ~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+++|-.++++.+- .. -+ ......|+|=+++|.|+.+..+.....+.+...+. -+++++|+..
T Consensus 68 i~~v~~and~~s~f~p------~f---~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa----~~IF~~s~~d 130 (148)
T COG4917 68 IIYVHAANDPESRFPP------GF---LDIGVKKVIGVVTKADLAEDADISLVKRWLREAGA----EPIFETSAVD 130 (148)
T ss_pred eeeeecccCccccCCc------cc---ccccccceEEEEecccccchHhHHHHHHHHHHcCC----cceEEEeccC
Confidence 9999999987542 11 11 11134568999999999876666666666654443 3688888865
No 307
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.1e-10 Score=86.55 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=105.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCC----------CCCCcccCCcceeEEEEEe--cCeEEEEEEcCCCCc
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPDRIVPTVGLNIGRIEV--SNSKLVFWDLGGQPG 80 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~ 80 (170)
+.++.++|.-+|+...|||||..+|......... ..+++...-+.++.-++.+ ....+.=.|+||+..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 3578899999999999999999888443222221 2222333344444444444 456788889999998
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cC----CHHHHHhHhCcccc
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AV----SADELARYLDLKKL 155 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~----~~~~~~~~~~~~~~ 155 (170)
+..-........|+.|+|+.++|...-+. ++.+.-. .+.+ -..+++++||.|+.+ ++ -.-|+++.+...++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLA-rQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLA-RQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHH-HHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 87766666688899999999998765432 2222111 2222 356899999999984 32 34477788888999
Q ss_pred ccceeEEEeeecc
Q 030848 156 DERVCMFEAVSGY 168 (170)
Q Consensus 156 ~~~~~~~~~~Sa~ 168 (170)
+...+|++.-||.
T Consensus 206 ~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 206 DGDNTPVIRGSAL 218 (449)
T ss_pred CCCCCCeeecchh
Confidence 9999999998885
No 308
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.17 E-value=1.4e-10 Score=89.95 Aligned_cols=85 Identities=27% Similarity=0.481 Sum_probs=72.2
Q ss_pred CCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCC
Q 030848 54 PTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNED 122 (170)
Q Consensus 54 ~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 122 (170)
+|.++....+.. .+..+.++|++|+..-+.-|..++.+++++|+|+++++ ...+.+....+..+.+...
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 377777778888 88999999999999999999999999999999998752 2347788899999999888
Q ss_pred CCCCcEEEEeeCCCcc
Q 030848 123 LQGAPLLILANKQDLP 138 (170)
Q Consensus 123 ~~~~~ii~v~nK~D~~ 138 (170)
..+.|+++++||.|+.
T Consensus 301 ~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLF 316 (389)
T ss_dssp GTTSEEEEEEE-HHHH
T ss_pred cccCceEEeeecHHHH
Confidence 8899999999999974
No 309
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.8e-10 Score=86.96 Aligned_cols=132 Identities=22% Similarity=0.214 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhccc------CCCCCCC------------cccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSN------VEGLPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 79 (170)
-...||-+|.+|||||...++..... +.+.... ...-.+......+++.+..+++.||||++
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 45789999999999999988321111 1111111 11123334455788899999999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCccc
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKK 154 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~ 154 (170)
.+.+-.-+-+--+|.++.|+|+...-. ....+.+ ..+...+.||+=++||.|-....+ ++|+++.+....
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLf----eVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLF----EVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQC 165 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCcc-HHHHHHH----HHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence 998777777788999999999886532 2223333 333347899999999999877554 556666666333
No 310
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.2e-10 Score=83.93 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=72.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhh--ccc-CCCCCCCcccCCcceeEEEEEec----CeEEEEEEcCCC----------
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSV--YSN-VEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQ---------- 78 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~D~~G~---------- 78 (170)
-.+.+.++|++|.|||||+|.|... ..+ ...........+..+........ ..+++++||||-
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 4589999999999999999999763 111 00011112222444444444433 357999999991
Q ss_pred ----CcchhhHHHHhh-------------ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 79 ----PGLRSIWEKYYE-------------EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 79 ----~~~~~~~~~~~~-------------~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
..+.+.+..|+. ++|++||.+.++... +..+ ...+..+ . ..+++|-|+.|+|...+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-~----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-S----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-h----ccccccceeeccccCCH
Confidence 111223333331 589999999876432 2222 2222222 1 46789999999998764
Q ss_pred CCHHH
Q 030848 141 VSADE 145 (170)
Q Consensus 141 ~~~~~ 145 (170)
.....
T Consensus 174 ~El~~ 178 (366)
T KOG2655|consen 174 DELNQ 178 (366)
T ss_pred HHHHH
Confidence 44333
No 311
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.12 E-value=2.3e-10 Score=82.77 Aligned_cols=70 Identities=26% Similarity=0.352 Sum_probs=44.9
Q ss_pred eEEEEEEcCCCCcchh-------hHHHHh-hccCEEEEEEeC---CCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848 68 SKLVFWDLGGQPGLRS-------IWEKYY-EEAHAVVFVIDA---ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~-------~~~~~~-~~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D 136 (170)
..+.++|||||-+... ....+. .-.-+++|++|. +++.+|-.-..+...++.. .+.|.+++.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence 3689999999765311 112221 123577888886 3555665444444455443 5889999999999
Q ss_pred cccc
Q 030848 137 LPDA 140 (170)
Q Consensus 137 ~~~~ 140 (170)
+.+.
T Consensus 193 v~d~ 196 (366)
T KOG1532|consen 193 VSDS 196 (366)
T ss_pred cccc
Confidence 9874
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.12 E-value=1.5e-09 Score=81.44 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=52.5
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHH
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL 146 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~ 146 (170)
+..+.|+||+|--... ...+..+|.++++...... .++......+ .+.|.++++||+|+.+.......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5789999999943211 1245677888888644332 3333332222 24567999999999865433221
Q ss_pred HhHh----Cc--cccccceeEEEeeeccCC
Q 030848 147 ARYL----DL--KKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 147 ~~~~----~~--~~~~~~~~~~~~~Sa~~g 170 (170)
...+ .. ........+++++||++|
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g 223 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEG 223 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCC
Confidence 2111 10 111123356999999886
No 313
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=7.4e-10 Score=84.75 Aligned_cols=146 Identities=17% Similarity=0.082 Sum_probs=100.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
-|...|+-..|||||+..+.+...+... .......|+++.++.....+..+.++|.||++++.......+...|.+++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~-EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLP-EEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccch-hhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 4678899999999999999764333331 222445678888888888888999999999999988777777889999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|+++.-..+ ..+.+ .++... .-...++++||+|..++...++..+.+.... .....+++++|+++|
T Consensus 81 V~~deGl~~q-tgEhL-~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g 147 (447)
T COG3276 81 VAADEGLMAQ-TGEHL-LILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTG 147 (447)
T ss_pred EeCccCcchh-hHHHH-HHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccC
Confidence 9997543222 11111 222222 2345799999999987554444443333111 156677899999876
No 314
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.09 E-value=4.6e-10 Score=82.69 Aligned_cols=79 Identities=27% Similarity=0.434 Sum_probs=51.2
Q ss_pred EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-----------------eEEEEEEcCCCC---
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP--- 79 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~D~~G~~--- 79 (170)
++++|.|++|||||+|++.+......+....+..+..+ .+.+.+ ..+.++|+||-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g----~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a 76 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVG----IVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 76 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceee----eEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC
Confidence 57999999999999999987443333232322233322 233322 259999999922
Q ss_pred ----cchhhHHHHhhccCEEEEEEeCC
Q 030848 80 ----GLRSIWEKYYEEAHAVVFVIDAA 102 (170)
Q Consensus 80 ----~~~~~~~~~~~~~~~~i~v~d~~ 102 (170)
.+...+...++++|++++|+|..
T Consensus 77 ~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 77 SKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred chhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 22334445568899999999874
No 315
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=1.4e-09 Score=77.33 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=75.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhc-ccCC--CCCCCcccCCcceeEEEEEe--cC--eEEEEEEcCC---CCcchhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVY-SNVE--GLPPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGG---QPGLRSI 84 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~--~~--~~~~i~D~~G---~~~~~~~ 84 (170)
.=.++|.|||.+|.||||++|.+.... .+.. .........|+.+......+ ++ .++.++|||| +-+-..+
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 356899999999999999999996521 1111 11122334455554433322 23 4689999999 1111112
Q ss_pred -----------HHHHhh--------------ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 85 -----------WEKYYE--------------EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 85 -----------~~~~~~--------------~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
...|++ ++|+++|.+.++. .++..+ .+.++.+. .-..++-|+-|+|..
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt-----~vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT-----EVVNVVPVIAKADTL 197 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh-----hhheeeeeEeecccc
Confidence 222222 3778888887763 333322 12222222 235689999999987
Q ss_pred ccCCHHHHHhHhC
Q 030848 139 DAVSADELARYLD 151 (170)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (170)
.-+.+.+..+.++
T Consensus 198 TleEr~~FkqrI~ 210 (336)
T KOG1547|consen 198 TLEERSAFKQRIR 210 (336)
T ss_pred cHHHHHHHHHHHH
Confidence 6666666666555
No 316
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.8e-09 Score=86.33 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCC-------CCCcc--cCCcceeEE----EE-----EecCeEEEEEEcCCC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-------PPDRI--VPTVGLNIG----RI-----EVSNSKLVFWDLGGQ 78 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~-------~~~~~--~~~~~~~~~----~~-----~~~~~~~~i~D~~G~ 78 (170)
..++.++|+-++|||+|+..+.......... +.+.. ...-++.++ .+ ..+..-+++.||||+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 3578999999999999999996532211110 11100 001111111 11 122345999999999
Q ss_pred CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
.++.......++.+|++++|+|+...=++...+..-+.+ ..+.|+++|+||+|..
T Consensus 208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai-----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI-----QNRLPIVVVINKVDRL 262 (971)
T ss_pred ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH-----hccCcEEEEEehhHHH
Confidence 999888888889999999999999766654333222222 2578999999999964
No 317
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=9.3e-10 Score=78.33 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh---hHHHHhhccCE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEAHA 94 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~ 94 (170)
.+|+++|...+||||+.+-+...+++....+.+ .|.......+...=.++.+||.|||..+.. -....++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflE---STski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLE---STSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEee---ccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 459999999999999998887644433322111 122222112222336799999999876532 23556799999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHc-CCCCCCCcEEEEeeCCCccccCC--------HHHHHhHhCccccccceeEEEee
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLLILANKQDLPDAVS--------ADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~ii~v~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
.|+|+|+.+.. .+.+......+.. +.-.++..+-++++|.|.....- .+...+.+...+.....+.|+-+
T Consensus 105 LifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 105 LIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 99999987542 1222222222221 22347889999999999875321 12222333345566667778777
Q ss_pred ec
Q 030848 166 SG 167 (170)
Q Consensus 166 Sa 167 (170)
|-
T Consensus 184 SI 185 (347)
T KOG3887|consen 184 SI 185 (347)
T ss_pred ee
Confidence 63
No 318
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.03 E-value=6.6e-09 Score=73.47 Aligned_cols=88 Identities=20% Similarity=0.172 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHH
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADE 145 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~ 145 (170)
....++++.|..-...... .-++.++.|+|+.+...... ....++ . ..-++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-~------~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-T------RSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-h------hccEEEEEhhhccccccccHHH
Confidence 4677889988321111111 22578999999986544321 111111 1 112899999999863 44555
Q ss_pred HHhHhCccccccceeEEEeeeccCC
Q 030848 146 LARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
..+.++.. ....+++++||++|
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g 181 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTK 181 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCC
Confidence 55555532 23578999999987
No 319
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.01 E-value=4.1e-09 Score=77.31 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=61.2
Q ss_pred CeEEEEEEcCC--CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-CH
Q 030848 67 NSKLVFWDLGG--QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-SA 143 (170)
Q Consensus 67 ~~~~~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-~~ 143 (170)
+..+.|+.|.| |.+.. ..+-+|.+++|.-+.-.+..+..+..+.++-. ++++||.|..+.. ..
T Consensus 143 G~DvIIVETVGvGQsev~-----I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~ 208 (323)
T COG1703 143 GYDVIIVETVGVGQSEVD-----IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAA 208 (323)
T ss_pred CCCEEEEEecCCCcchhH-----HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHH
Confidence 56899999998 33222 23567999999887777777777766666633 8999999965532 22
Q ss_pred HHHHhHhC----ccccccceeEEEeeeccCC
Q 030848 144 DELARYLD----LKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 144 ~~~~~~~~----~~~~~~~~~~~~~~Sa~~g 170 (170)
.++...++ ......+..|++.+||.+|
T Consensus 209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g 239 (323)
T COG1703 209 RELRSALDLLREVWRENGWRPPVVTTSALEG 239 (323)
T ss_pred HHHHHHHHhhcccccccCCCCceeEeeeccC
Confidence 23333333 2344677889999999876
No 320
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.2e-10 Score=85.42 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=94.6
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-------E----------------------
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-------R---------------------- 62 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~---------------------- 62 (170)
+.++..++|.-+|+...||||+++++++..+..... +...++.+... .
T Consensus 33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~---ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~ 109 (466)
T KOG0466|consen 33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKN---ELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDR 109 (466)
T ss_pred hhheeeeeecceeccccCcceeeeeeccceEEEehh---hhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCC
Confidence 445778999999999999999999996533221110 00000000000 0
Q ss_pred --EE---ec-----CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848 63 --IE---VS-----NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132 (170)
Q Consensus 63 --~~---~~-----~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~ 132 (170)
.+ .. -..+.++|+||++-+.........-.|++++++..+.++......+.+..+-.. .-..++++-
T Consensus 110 ~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQ 186 (466)
T KOG0466|consen 110 PPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQ 186 (466)
T ss_pred CCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEe
Confidence 00 00 136899999999887776666667788999999887655543333333333111 124589999
Q ss_pred eCCCccccCCHHHHHhHhC--ccccccceeEEEeeeccC
Q 030848 133 NKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 133 nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~ 169 (170)
||+|+..+.+..|..+.++ ..+...+..|++++||..
T Consensus 187 NKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQl 225 (466)
T KOG0466|consen 187 NKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQL 225 (466)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhh
Confidence 9999988665555544444 223345678999999864
No 321
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.98 E-value=3.1e-09 Score=75.65 Aligned_cols=143 Identities=17% Similarity=0.105 Sum_probs=74.9
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCC------CC---CCc-ccCCcceeEEE--------------------
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LP---PDR-IVPTVGLNIGR-------------------- 62 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~------~~---~~~-~~~~~~~~~~~-------------------- 62 (170)
..+....|.++|+.|+|||||++++......... .. .+. .....+.....
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 3446778999999999999999999653221000 00 000 00000000000
Q ss_pred EEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-
Q 030848 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV- 141 (170)
Q Consensus 63 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~- 141 (170)
....+..+.++++.|.-.... .+....+..+.|+|+.+...... ..... ...|.++++||+|+.+..
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~---~~~~~------~~~a~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL---KYPGM------FKEADLIVINKADLAEAVG 165 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh---hhHhH------HhhCCEEEEEHHHccccch
Confidence 001134677888888211111 11123455567777765432111 01111 245679999999997632
Q ss_pred -CHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 142 -SADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
...+..+.++.. ....+++++||++|
T Consensus 166 ~~~~~~~~~l~~~---~~~~~i~~~Sa~~g 192 (207)
T TIGR00073 166 FDVEKMKADAKKI---NPEAEIILMSLKTG 192 (207)
T ss_pred hhHHHHHHHHHHh---CCCCCEEEEECCCC
Confidence 244455544421 13478999999986
No 322
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=8.6e-10 Score=88.97 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----------------ecCeEEEEEEcCCCCcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~ 81 (170)
.-+||+|+..+|||-|+..+.+ +++.........+.++.++.... +.-..+.++||||++.|
T Consensus 476 PIcCilGHVDTGKTKlld~ir~--tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRG--TNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred ceEEEeecccccchHHHHHhhc--cccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 4589999999999999999977 44444433344444444433211 12235889999999999
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~ 137 (170)
...+......||.+|+|+|+-..-.-+. ++.+ +.+...+.|+|+.+||+|-
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqt----iESi-~lLR~rktpFivALNKiDR 604 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQT----IESI-NLLRMRKTPFIVALNKIDR 604 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcch----hHHH-HHHHhcCCCeEEeehhhhh
Confidence 9999999999999999999974311111 1122 2222268999999999996
No 323
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.96 E-value=1.5e-08 Score=80.02 Aligned_cols=131 Identities=21% Similarity=0.353 Sum_probs=87.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
.++-+.+.++|+.++|||.+++.+.+ ....+.......+...++.....++..-+.+-|.+-. ........- ..||
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflg--r~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLG--RSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhc--cccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 45668899999999999999999976 2222222223334444444444455566777777653 221111111 6799
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-----cCCHHHHHhHhC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----AVSADELARYLD 151 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-----~~~~~~~~~~~~ 151 (170)
+++++||.+++.+++............ ...|++++.+|+|+.+ +.++++.+..+.
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~ 557 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLG 557 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcC
Confidence 999999999999998877766665443 5889999999999976 234445544443
No 324
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.95 E-value=3.7e-08 Score=77.66 Aligned_cols=94 Identities=19% Similarity=0.359 Sum_probs=70.2
Q ss_pred EEEEEEcCC-------------CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848 69 KLVFWDLGG-------------QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (170)
Q Consensus 69 ~~~i~D~~G-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~ 135 (170)
...++|+|| -+.+.++...++.+.+++|+|+. ..+.+..+...-.+...+.+.+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ---DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ---DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec---cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 589999999 22345566788999999999993 34556666667777778887889999999999
Q ss_pred Ccccc--CCHHHHHhHhCccccccceeEEEee
Q 030848 136 DLPDA--VSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 136 D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
|+.++ .+++.+.+.+.-..+......|+.+
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaV 521 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAV 521 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEE
Confidence 99874 5778888888755454445555544
No 325
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.2e-08 Score=75.41 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-------------------------------
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS------------------------------- 66 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 66 (170)
.-|+++|.-..|||||++-+... +.. .......||++.......+.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~--dyp-g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQ--DYP-GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhC--CCC-ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 46899999999999999999762 211 11122233333322221111
Q ss_pred ----------CeEEEEEEcCC------C---C--cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCC
Q 030848 67 ----------NSKLVFWDLGG------Q---P--GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125 (170)
Q Consensus 67 ----------~~~~~i~D~~G------~---~--~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (170)
--++.++|||| | + .+....+=+..++|.++++||+..-+--.+....+.++.. .+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Cc
Confidence 01799999999 1 1 1234455567899999999998755444454445555533 45
Q ss_pred CcEEEEeeCCCccccCCH
Q 030848 126 APLLILANKQDLPDAVSA 143 (170)
Q Consensus 126 ~~ii~v~nK~D~~~~~~~ 143 (170)
-.+-+|+||+|..+..+.
T Consensus 212 dkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQL 229 (532)
T ss_pred ceeEEEeccccccCHHHH
Confidence 678999999998765443
No 326
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.94 E-value=4.6e-10 Score=79.48 Aligned_cols=87 Identities=24% Similarity=0.474 Sum_probs=71.8
Q ss_pred cCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeC----------CCcccHHHHHHHHHHHHcCCC
Q 030848 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA----------ACPSRFEDSKTALEKVLRNED 122 (170)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~ 122 (170)
.||+++..+.+++++..+.++|.+|+..-+.-|..++.++-.+++++.. ++....++....+..++.+.+
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 3678887778888889999999999988888888888776666665543 345567788889999999999
Q ss_pred CCCCcEEEEeeCCCccc
Q 030848 123 LQGAPLLILANKQDLPD 139 (170)
Q Consensus 123 ~~~~~ii~v~nK~D~~~ 139 (170)
..+.++|+++||.|+.+
T Consensus 264 F~nssVIlFLNKkDlLE 280 (359)
T KOG0085|consen 264 FQNSSVILFLNKKDLLE 280 (359)
T ss_pred ccCCceEEEechhhhhh
Confidence 99999999999999854
No 327
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.92 E-value=3.7e-09 Score=77.09 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=59.6
Q ss_pred CcchhhHHHHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH-HHHHhHhCccccc
Q 030848 79 PGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-DELARYLDLKKLD 156 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~-~~~~~~~~~~~~~ 156 (170)
+++..+...+++++|.+++|+|++++. +++.+..|+..+.. .+.|+++|+||+||.+.... .+..+.++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 344444455789999999999999887 78888888765533 57899999999999653222 12333333
Q ss_pred cceeEEEeeeccCC
Q 030848 157 ERVCMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~~~~~~~Sa~~g 170 (170)
....+++++||++|
T Consensus 95 ~~g~~v~~~SAktg 108 (245)
T TIGR00157 95 NIGYQVLMTSSKNQ 108 (245)
T ss_pred HCCCeEEEEecCCc
Confidence 34568999999986
No 328
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.90 E-value=1.3e-09 Score=80.47 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=26.7
Q ss_pred HHhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
...++..+...-+.++|.+|||||||++++.+.
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555667788999999999999999988653
No 329
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.89 E-value=9.4e-09 Score=73.73 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=74.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------cchhhHHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEKY 88 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~ 88 (170)
...|++++|-|.+|||||+..+..-.+....+.+ .|..+.-..+.+++..+++.|+||-- ...+.....
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF----TTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEF----TTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceee----eEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE
Confidence 5689999999999999999999764444443332 34444445688999999999999921 112233445
Q ss_pred hhccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQD 136 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D 136 (170)
.+.+|.++.|.|++..+-..... .-++.+--......+.+.+-..|..
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~g 185 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTG 185 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccC
Confidence 68899999999998765443332 2233332223323344444444443
No 330
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.83 E-value=1.8e-08 Score=72.64 Aligned_cols=85 Identities=24% Similarity=0.502 Sum_probs=70.2
Q ss_pred CcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCCCC
Q 030848 55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDLQ 124 (170)
Q Consensus 55 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 124 (170)
|.++....+.+...++..+|.+||..-+.-|...+.+.-++|+|+..++ ...+++....+..+.+..+..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 4444444566667789999999999999999999999999999986642 235678888999999988888
Q ss_pred CCcEEEEeeCCCccc
Q 030848 125 GAPLLILANKQDLPD 139 (170)
Q Consensus 125 ~~~ii~v~nK~D~~~ 139 (170)
...+|+++||.|+..
T Consensus 269 tisvIlFLNKqDlla 283 (379)
T KOG0099|consen 269 TISVILFLNKQDLLA 283 (379)
T ss_pred hhheeEEecHHHHHH
Confidence 999999999999865
No 331
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.82 E-value=2.7e-09 Score=83.67 Aligned_cols=150 Identities=18% Similarity=0.340 Sum_probs=103.1
Q ss_pred HHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecCeEEEEEEcCCCCcchh
Q 030848 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLVFWDLGGQPGLRS 83 (170)
Q Consensus 6 ~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~ 83 (170)
++.|+.+++.+++|+.|+|..++|||+|+.+++. +++.+...+.-+...+ .++++...+.+.|-+|...
T Consensus 19 sqewtlsrsipelk~givg~~~sgktalvhr~lt------gty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~--- 89 (749)
T KOG0705|consen 19 SQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLT------GTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD--- 89 (749)
T ss_pred ccceeeecccchhheeeeecccCCceeeeeeecc------ceeccccCCcCccceeeEEeeccceEeeeecccCCch---
Confidence 6789999999999999999999999999999976 4444433333222222 3445556677777777222
Q ss_pred hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccce
Q 030848 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERV 159 (170)
Q Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~ 159 (170)
..|...+|.+|+||...+..+++........+..+......|+++++++.-... ...-.+..+... ....
T Consensus 90 --aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~----~~kr 163 (749)
T KOG0705|consen 90 --AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSA----QMKR 163 (749)
T ss_pred --hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHH----hcCc
Confidence 234467799999999999999999988888887766656788888888754332 222223332222 2445
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
+.+++++|..|
T Consensus 164 csy~et~atyG 174 (749)
T KOG0705|consen 164 CSYYETCATYG 174 (749)
T ss_pred cceeecchhhh
Confidence 67777777654
No 332
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.80 E-value=5.6e-08 Score=74.20 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc-cCCCCCCCcccCCcceeEEEE-------------EecCeEEEEEEcCCC-----
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRI-------------EVSNSKLVFWDLGGQ----- 78 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i~D~~G~----- 78 (170)
+++.++|.|++|||||+|++.+... ......+....|..+.-...- ......+.++|.||-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999987544 333333333444443321110 001246899999992
Q ss_pred --CcchhhHHHHhhccCEEEEEEeCC
Q 030848 79 --PGLRSIWEKYYEEAHAVVFVIDAA 102 (170)
Q Consensus 79 --~~~~~~~~~~~~~~~~~i~v~d~~ 102 (170)
+.....+...++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 234446667789999999999885
No 333
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=4.9e-08 Score=66.45 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=34.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
..++++++|.+|+|||||+|++.+......+..+. .|... ..+.. +..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g---~T~~~--~~~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPG---ETKVW--QYITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCC---eeEeE--EEEEc-CCCEEEEECcC
Confidence 46789999999999999999997622211111111 12111 12222 34588999998
No 334
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.76 E-value=3.3e-08 Score=73.28 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=74.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCC--cchhhHH-----
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQP--GLRSIWE----- 86 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~--~~~~~~~----- 86 (170)
.....|.+||.+++|||||++.+.... -...+..+.|.+.+....... +..+-+.||.|.- -......
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aa----l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAA----LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhh----cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHH
Confidence 445689999999999999999997521 122233444544444444443 4557788999922 1111111
Q ss_pred -HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCC----CcEEEEeeCCCccc
Q 030848 87 -KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG----APLLILANKQDLPD 139 (170)
Q Consensus 87 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~ii~v~nK~D~~~ 139 (170)
.....+|.++.|.|++.|.-.+..... ...++..+.+. ..++=|-||+|..+
T Consensus 252 LeeVaeadlllHvvDiShP~ae~q~e~V-l~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 252 LEEVAEADLLLHVVDISHPNAEEQRETV-LHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHhhcceEEEEeecCCccHHHHHHHH-HHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 224679999999999998664443333 33334444332 45677889999765
No 335
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.1e-07 Score=74.89 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=47.6
Q ss_pred EEEEEEcCC---CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 69 KLVFWDLGG---QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 69 ~~~i~D~~G---~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
.+.++|.|| ..+...-...+..++|++|+|.++.+.-+.. ..+.+..... .++.|+++-||+|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~----~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSE----EKPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhc----cCCcEEEEechhhhhcc
Confidence 688999999 5566677777889999999999887653322 2333333333 36667888899998764
No 336
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.75 E-value=3.8e-08 Score=69.04 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=36.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCC---CCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE---GLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
...++.++|.+|+|||||+|++.+...... ........+.+......+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 346899999999999999999976322110 0111112222222222333322 689999999
No 337
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=3e-08 Score=72.16 Aligned_cols=120 Identities=22% Similarity=0.341 Sum_probs=77.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC----eEEEEEEcCC-------CCc----
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN----SKLVFWDLGG-------QPG---- 80 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~G-------~~~---- 80 (170)
=.++|+.||.+|.|||||++.+.+ ........+-..|++.+.....+++. .++.++||.| .+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFN--t~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFN--TKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhc--cccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 458999999999999999999987 44444445555566666655555443 4689999999 111
Q ss_pred ---chhhHHHHh---------------hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848 81 ---LRSIWEKYY---------------EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (170)
Q Consensus 81 ---~~~~~~~~~---------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~ 142 (170)
+...+..|+ .+.++++|.+.++ .+++..+......-+. .++.||-++-|.|.-....
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~e 193 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTISKEE 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHHH
Confidence 122233332 2478899999877 3444444333333222 4677899999999755433
No 338
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.74 E-value=4.8e-07 Score=67.37 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=57.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC------eEEEEEEcCCCCcchhhHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
..-+|+|.|+.|+|||||+.++.+.. ...+.-++.+.++++.+ .++.+|-+-|+..........+
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---------~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al 121 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---------TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFAL 121 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---------ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcc
Confidence 34689999999999999999997732 22233344444555432 4688888889776655544433
Q ss_pred hc---c-CEEEEEEeCCCcccH-HHHHHH
Q 030848 90 EE---A-HAVVFVIDAACPSRF-EDSKTA 113 (170)
Q Consensus 90 ~~---~-~~~i~v~d~~~~~~~-~~~~~~ 113 (170)
.. + -.+|++.|+++|..+ +.+..|
T Consensus 122 ~ats~aetlviltasms~Pw~~lesLqkW 150 (473)
T KOG3905|consen 122 PATSLAETLVILTASMSNPWTLLESLQKW 150 (473)
T ss_pred cccCccceEEEEEEecCCcHHHHHHHHHH
Confidence 32 2 367788899998554 333333
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.74 E-value=3.4e-08 Score=68.26 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=35.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
..++++++|.+++|||||+|++.+......+. ....|.... .+.. +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~---~pg~T~~~~--~~~~-~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGA---TPGVTKSMQ--EVHL-DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecC---CCCeEcceE--EEEe-CCCEEEEECcC
Confidence 45899999999999999999998632211111 111122222 2222 34689999998
No 340
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.71 E-value=5.1e-08 Score=65.19 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=33.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 78 (170)
+++++|.+|+|||||+|++.+..... .... +..+.....+...+ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~---~~~~--~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS---VSAT--PGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee---eCCC--CCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999997622111 1111 11111222333332 6899999994
No 341
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.70 E-value=9.4e-07 Score=63.66 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=53.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cCeEEEEEEcCCCCcc------hhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGL------RSI 84 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~------~~~ 84 (170)
..+-..|.|+|++++|||+|+|.+.+..... .........|.++-...... .+..+.++||+|-... ...
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 3456679999999999999999998731111 11111222333433333333 3578999999993321 111
Q ss_pred HHHHhh--ccCEEEEEEeCCCccc
Q 030848 85 WEKYYE--EAHAVVFVIDAACPSR 106 (170)
Q Consensus 85 ~~~~~~--~~~~~i~v~d~~~~~~ 106 (170)
....+. -++++||..+....+.
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcccHH
Confidence 222223 3788888887765443
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.69 E-value=5.7e-08 Score=64.95 Aligned_cols=76 Identities=22% Similarity=0.259 Sum_probs=49.9
Q ss_pred HHHHhhccCEEEEEEeCCCcccHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848 85 WEKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 85 ~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
....++++|++++|+|++++.+.. .+..++.. .. .+.|+++++||+|+.++....+..+.++ .....+
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~----~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~i 74 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKE----VD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVV 74 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh----cc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeE
Confidence 344568999999999998876543 22222222 11 4679999999999965443334444444 233578
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+++||++|
T Consensus 75 i~iSa~~~ 82 (141)
T cd01857 75 VFFSALKE 82 (141)
T ss_pred EEEEecCC
Confidence 89999875
No 343
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=5.4e-08 Score=78.97 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=78.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC----------CCCcccCCcceeEEEEE--ecCeEEEEEEcCCCCcch
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----------PPDRIVPTVGLNIGRIE--VSNSKLVFWDLGGQPGLR 82 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~ 82 (170)
...-+++++-+...|||||...+......+... -.++....+......+. .++..+.++|+||+..|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 345679999999999999999995422211111 01111112222222333 378899999999999999
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~ 137 (170)
+......+-+|++++++|+...-.-+.. .++++.+-.+...++++||+|-
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~-----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY-----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH-----HHHHHHHHccCceEEEEehhhh
Confidence 9898888999999999999855332222 2233333346678999999993
No 344
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.68 E-value=1e-06 Score=69.71 Aligned_cols=83 Identities=28% Similarity=0.466 Sum_probs=57.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC------eEEEEEEcCCCCcchhhHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
.+-.|+|+|..++|||||+.+|.+.. ...++.++.+...+..+ ..+.+|-+.|...+..+....+
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---------~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~l 94 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---------DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFAL 94 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---------CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccC
Confidence 45689999999999999999986521 12345566655554432 3689999988766666554433
Q ss_pred hc----cCEEEEEEeCCCcccH
Q 030848 90 EE----AHAVVFVIDAACPSRF 107 (170)
Q Consensus 90 ~~----~~~~i~v~d~~~~~~~ 107 (170)
.. .-.+++|+|.+.|..+
T Consensus 95 t~~~l~~t~vvIvlDlS~PW~~ 116 (472)
T PF05783_consen 95 TPENLPNTLVVIVLDLSKPWNI 116 (472)
T ss_pred CcccccceEEEEEecCCChHHH
Confidence 32 2467889999988655
No 345
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.1e-07 Score=70.47 Aligned_cols=122 Identities=22% Similarity=0.288 Sum_probs=71.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhh-ccc----------------CCCCCCCcccCCcceeEE--EEEec----------
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSV-YSN----------------VEGLPPDRIVPTVGLNIG--RIEVS---------- 66 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~-~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~---------- 66 (170)
-++|+.++|...+|||||+--+..- ..+ ..+.++.-.....+.+.. .+++.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3579999999999999998665220 011 111111111222222211 12221
Q ss_pred --CeEEEEEEcCCCCcchhhHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848 67 --NSKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (170)
Q Consensus 67 --~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~ 142 (170)
..-+.++|++|+..+.......+. -.|.+++|+.++....+.. ++.+.-+.. -+.|++++.+|+|+.++..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 235899999999887654433222 3588899999887655421 222222211 4889999999999977533
No 346
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.2e-08 Score=78.08 Aligned_cols=129 Identities=22% Similarity=0.181 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhccc------CC-CCCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSN------VE-GLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~------~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 83 (170)
-+|.++..-.+||||...++...... +. +.+.+ ...-|+...-..+++++.++.++||||+..++-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 47899999999999999999432111 11 11111 111233333445778899999999999999999
Q ss_pred hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc---CCHHHHHhHhC
Q 030848 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELARYLD 151 (170)
Q Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~---~~~~~~~~~~~ 151 (170)
...++++--|+++.|||++..-.-+.+ .+..+..+.+.|-++++||+|.... ...+.+++.+.
T Consensus 118 everclrvldgavav~dasagve~qtl-----tvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTL-----TVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCccccee-----eeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 899999999999999999854222221 2223344468899999999998763 34555555555
No 347
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.60 E-value=1.5e-07 Score=68.42 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=78.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcchhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSI 84 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 84 (170)
..+.++.+.|.+++|||||+|.+..... ...........|..++. -.-+.++.++|+|| .++....
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~k~K~g~Tq~in~---f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKN-IADTSKSKNGKTQAINH---FHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhh-hhhhcCCCCccceeeee---eeccceEEEEecCCcccccCCccCcchHhHh
Confidence 3568999999999999999999965211 11111112333333332 22346789999999 2333444
Q ss_pred HHHHhhccC---EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC------HHHHHhHhC--cc
Q 030848 85 WEKYYEEAH---AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS------ADELARYLD--LK 153 (170)
Q Consensus 85 ~~~~~~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~------~~~~~~~~~--~~ 153 (170)
...|+.+-+ -+.+++|++-+- +.... ..+++++..+.|+.+|+||+|.....- ...+...++ ..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~---~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPI--QPTDN---PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCC--CCCCh---HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 555543322 334455665332 21111 122333336899999999999864221 122222122 12
Q ss_pred ccccceeEEEeeeccC
Q 030848 154 KLDERVCMFEAVSGYD 169 (170)
Q Consensus 154 ~~~~~~~~~~~~Sa~~ 169 (170)
+......|.+-+|+.+
T Consensus 285 ~~f~~~~Pw~~~Ssvt 300 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVT 300 (320)
T ss_pred cceeccCCceeeeccc
Confidence 2234455666677765
No 348
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.60 E-value=2.6e-07 Score=70.13 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=74.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh-hcccCCCCCCC-----------cccCCcceeEEEE-------------------
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS-VYSNVEGLPPD-----------RIVPTVGLNIGRI------------------- 63 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~------------------- 63 (170)
+..+.+.+.|+.++|||||+-++.. ...+-.+.... .....+.....-+
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 4668899999999999999988732 11111111110 0111111111111
Q ss_pred --EecCeEEEEEEcCCCCcchhhHHH--HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 64 --EVSNSKLVFWDLGGQPGLRSIWEK--YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 64 --~~~~~~~~i~D~~G~~~~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
.-.+.-+.++||.|+|.+.++... +-++.|..++++.+++.-+.. .+ +.+...-.-+.|++++.||+|+.+
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tk----EHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TK----EHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hh----HhhhhhhhhcCCEEEEEEecccCc
Confidence 112356899999999998765443 347899999999998764421 11 111111124789999999999977
Q ss_pred cCC
Q 030848 140 AVS 142 (170)
Q Consensus 140 ~~~ 142 (170)
..-
T Consensus 270 ddr 272 (527)
T COG5258 270 DDR 272 (527)
T ss_pred HHH
Confidence 443
No 349
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.4e-08 Score=77.14 Aligned_cols=156 Identities=22% Similarity=0.199 Sum_probs=95.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC------------CCC-------------c--ccCCcceeEEEEEecC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------PPD-------------R--IVPTVGLNIGRIEVSN 67 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------------~~~-------------~--~~~~~~~~~~~~~~~~ 67 (170)
+..++++++|...+||||+-..|.....-+... ..+ . -..|++...-++.-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 677899999999999999976662211111110 000 1 1135555555677778
Q ss_pred eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc---HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD 144 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~ 144 (170)
..+.+.|.||+..+......-..++|..++|+.+.-.+. |+.-.+.-..........-...|+++||+|-+.-....
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 899999999999988766667788999999998853321 22111111122111112345789999999988633322
Q ss_pred ----HHHhHhC----ccc-cccceeEEEeeeccCC
Q 030848 145 ----ELARYLD----LKK-LDERVCMFEAVSGYDG 170 (170)
Q Consensus 145 ----~~~~~~~----~~~-~~~~~~~~~~~Sa~~g 170 (170)
|..+.+. ..+ .......|++||..+|
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG 271 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTG 271 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccc
Confidence 2222222 222 2345677999998876
No 350
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.57 E-value=2e-07 Score=71.72 Aligned_cols=129 Identities=10% Similarity=0.135 Sum_probs=67.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH--------HH
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE--------KY 88 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~ 88 (170)
..++.++|.+|+|||||+|++.+..............|.+......+.. +..+.++||||-........ ..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~ 232 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGIINSHQMAHYLDKKDLKYI 232 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCCChhHhhhhcCHHHHhhc
Confidence 3689999999999999999998732211111111222332333333433 23467999999433221111 11
Q ss_pred h--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 89 Y--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 89 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
. +......+.++..+.-.+..+.. +......+..+.+..++.+.......+.+.+.++
T Consensus 233 ~~~~~i~~~~~~l~~~q~~~~ggl~~-----~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~ 292 (360)
T TIGR03597 233 TPKKEIKPKTYQLNPNQTLFLGGLAR-----FDYLKGEKTSFTFYVSNELNIHRTKLENADELYN 292 (360)
T ss_pred CCCCccCceEEEeCCCCEEEEceEEE-----EEEecCCceEEEEEccCCceeEeechhhhHHHHH
Confidence 1 23566677776655433333211 1112223556777777777665444444444433
No 351
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.57 E-value=4.2e-07 Score=67.86 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=58.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-----------------CeEEEEEEcCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDLGG 77 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~D~~G 77 (170)
.+++++.+||.|++|||||+|.+....-...+..+. |++-+...+.+. +..++++|.+|
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~----TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFC----TIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcc----eeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 477899999999999999999997633332222222 222222223221 23699999999
Q ss_pred -------CCcchhhHHHHhhccCEEEEEEeCC
Q 030848 78 -------QPGLRSIWEKYYEEAHAVVFVIDAA 102 (170)
Q Consensus 78 -------~~~~~~~~~~~~~~~~~~i~v~d~~ 102 (170)
.+.+...+...++.+|+++.|+++.
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 4556667777889999999999764
No 352
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.56 E-value=9.4e-08 Score=64.91 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=47.4
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
.++....+++|++++|+|++++..... ... ...... .+.|+++++||+|+.+.....+...... ....++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l-~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~ 73 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS-RKL-ERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKE-----SEGIPV 73 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC-HHH-HHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHH-----hCCCcE
Confidence 455666788999999999987643322 111 122221 3679999999999864322222211111 233578
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+++||++|
T Consensus 74 ~~iSa~~~ 81 (156)
T cd01859 74 VYVSAKER 81 (156)
T ss_pred EEEEcccc
Confidence 99999875
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.54 E-value=3.3e-07 Score=63.25 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=35.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
..++++++|.+++|||||+|++.+... . . ....+.+......+... ..+.+|||||
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~--~-~--~~~~~~~T~~~~~~~~~-~~~~~iDtpG 169 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV--A-K--VGNKPGVTKGIQWIKIS-PGIYLLDTPG 169 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--e-e--ecCCCCEEeeeEEEEec-CCEEEEECCC
Confidence 447899999999999999999976211 0 0 01111112222223332 5689999999
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.52 E-value=3.4e-07 Score=67.98 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=36.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 78 (170)
...++++++|.+|+|||||+|++.+......+. ....|.... .+.. +..+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~---~~g~T~~~~--~~~~-~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN---RPGVTKGQQ--WIKL-SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC---CCCeecceE--EEEe-CCCEEEEECCCc
Confidence 356899999999999999999997621111111 111122222 2333 236899999994
No 355
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=7.3e-07 Score=70.87 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=78.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
+.+-+.|+|++|.|||||+..+...++.. .. ..+.-.+..+.++...+++..+|. .+.++ ....+.+|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~------ti-~~i~GPiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLV 137 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQ------TI-DEIRGPITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLV 137 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHh------hh-hccCCceEEeecceeEEEEEeChH--HHHHH-HhHHHhhhee
Confidence 55677899999999999999996522211 11 122222334667888999999993 33333 3455889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLD 151 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~ 151 (170)
|+++|.+-.-..+ ..+.+ .++... .-..++-|.|..|+.. +..+.++.++++
T Consensus 138 lLlIdgnfGfEME-TmEFL-nil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlk 190 (1077)
T COG5192 138 LLLIDGNFGFEME-TMEFL-NILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLK 190 (1077)
T ss_pred EEEeccccCceeh-HHHHH-HHHhhc--CCCceEEEEeecccccChHHHHHHHHHHh
Confidence 9999987542222 22222 222322 3455788899999986 566666666554
No 356
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.50 E-value=3.6e-08 Score=68.22 Aligned_cols=41 Identities=24% Similarity=0.159 Sum_probs=28.3
Q ss_pred cEEEEeeCCCccccCCH--HHHHhHhCccccccceeEEEeeeccCC
Q 030848 127 PLLILANKQDLPDAVSA--DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 127 ~ii~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.-++|+||.|+.+.... +...+..+.. -...+|+.+|+++|
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~---np~~~ii~~n~ktg 186 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEV---NPEAPIIFTNLKTG 186 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHh---CCCCCEEEEeCCCC
Confidence 45899999999884443 5444444411 24568999999987
No 357
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.50 E-value=5.8e-07 Score=78.47 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=67.1
Q ss_pred EEEEcCCCCChHHHHHHHHhhcccCCC----CCCCcccCCcceeEEEEEecCeEEEEEEcCC----CC----cchhhHHH
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QP----GLRSIWEK 87 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~----~~~~~~~~ 87 (170)
.+|+|++|+||||++++--.. ..... ........|..|.+- -...-.++||+| ++ .....|..
T Consensus 114 YlviG~~gsGKtt~l~~sgl~-~pl~~~~~~~~~~~~~~t~~c~ww----f~~~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNSGLK-FPLAERLGAAALRGVGGTRNCDWW----FTDEAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhCCCC-CcCchhhccccccCCCCCcccceE----ecCCEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999987221 11110 001111222223221 123467999999 22 23345655
Q ss_pred Hhh---------ccCEEEEEEeCCCcc-----cH----HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 88 YYE---------EAHAVVFVIDAACPS-----RF----EDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 88 ~~~---------~~~~~i~v~d~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+++ -.|++|+++|+.+-- .. ..++..+.++....+ -..|+.+++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence 542 389999999986321 11 233444455554444 5799999999999863
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.48 E-value=5.8e-07 Score=67.12 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=35.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
...++++++|.+++||||++|++.+......+. ....|... ..+.. +..+.++||||
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~---~~g~T~~~--~~~~~-~~~~~l~DtPG 175 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN---RPGVTKAQ--QWIKL-GKGLELLDTPG 175 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCC---CCCeEEEE--EEEEe-CCcEEEEECCC
Confidence 356899999999999999999997621111111 11112222 22322 34689999999
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.48 E-value=4.2e-07 Score=61.69 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=35.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
....+++++|.+|+|||||+|++.+......+. ....|.... .+.. +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~---~~~~t~~~~--~~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGN---VPGTTTSQQ--EVKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccC---CCCcccceE--EEEe-cCCEEEEECCC
Confidence 456889999999999999999998632111111 111122221 2222 35689999998
No 360
>PRK12289 GTPase RsgA; Reviewed
Probab=98.47 E-value=6.7e-07 Score=68.39 Aligned_cols=74 Identities=19% Similarity=0.119 Sum_probs=49.9
Q ss_pred HhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 88 YYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.+.++|.+++|+|+.++. ....+..++.... ..+.|+++|+||+|+.+.....+..+.+. ....+++++|
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~~iS 156 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPLFIS 156 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEEEEE
Confidence 368899999999998775 3334444444332 25789999999999965433333334443 3445789999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 157 A~tg 160 (352)
T PRK12289 157 VETG 160 (352)
T ss_pred cCCC
Confidence 9876
No 361
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.47 E-value=4.7e-07 Score=67.58 Aligned_cols=76 Identities=18% Similarity=0.041 Sum_probs=52.5
Q ss_pred HHHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848 86 EKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
+..+.++|.+++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+............ ....++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEAL-----ALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHH-----hCCCeEEE
Confidence 34568899999999999887 77766666655433 4689999999999965422111122222 23468999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 144 vSA~~g 149 (287)
T cd01854 144 VSAKTG 149 (287)
T ss_pred EECCCC
Confidence 999876
No 362
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.46 E-value=2.8e-06 Score=57.92 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=36.4
Q ss_pred eEEEEEEcCCCCcchhhHHHH--------hhccCEEEEEEeCCCcccHH-HHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848 68 SKLVFWDLGGQPGLRSIWEKY--------YEEAHAVVFVIDAACPSRFE-DSKTALEKVLRNEDLQGAPLLILANKQDL 137 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~ii~v~nK~D~ 137 (170)
....++|+||-.+.......+ .-+.+.++.++|+....... ....+..++.. .+ ++++||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----ad---~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----AD---RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----CC---EEEEecccC
Confidence 467899999965444333321 23578999999976432211 11222223322 12 789999996
No 363
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.45 E-value=5.2e-07 Score=68.34 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=36.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
....++.++|.|++||||++|+|.+......+..+ ..|.+.. .+... ..+.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P---G~Tk~~q--~i~~~-~~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP---GTTKGIQ--WIKLD-DGIYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC---ceecceE--EEEcC-CCeEEecCCC
Confidence 34588999999999999999999873331111111 1222222 22222 3389999999
No 364
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.44 E-value=9.8e-07 Score=59.87 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=34.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecCeEEEEEEcCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G 77 (170)
...+++++|.+++||||++|++.+... . ...++.+.+ ...+. .+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~--~-----~~~~~~~~t~~~~~~~-~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS--A-----STSPSPGYTKGEQLVK-ITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc--c-----ccCCCCCeeeeeEEEE-cCCCEEEEECcC
Confidence 457899999999999999999975211 1 111122222 11222 234799999998
No 365
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.43 E-value=4.7e-06 Score=65.12 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=62.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccC------CCCCCCc---------ccCCcceeEEEEEe----------------
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNV------EGLPPDR---------IVPTVGLNIGRIEV---------------- 65 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~------~~~~~~~---------~~~~~~~~~~~~~~---------------- 65 (170)
...|+++|.+|+||||++..+....... ...+... +....++.+.....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999885322111 0011100 11112222221110
Q ss_pred -cCeEEEEEEcCCCCcchh----hHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 66 -SNSKLVFWDLGGQPGLRS----IWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 66 -~~~~~~i~D~~G~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
.+..+.|+||||...... ....+ ....+-+++|+|+.-...-.. ....+... -.+--+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc----cCCcEEEEECccCC
Confidence 246899999999543322 22222 124678899999875422222 22222221 12457889999974
Q ss_pred c
Q 030848 139 D 139 (170)
Q Consensus 139 ~ 139 (170)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
No 366
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.43 E-value=3.1e-07 Score=62.39 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-.++++|++|+|||||+|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 367
>PRK00098 GTPase RsgA; Reviewed
Probab=98.42 E-value=5.8e-07 Score=67.45 Aligned_cols=74 Identities=24% Similarity=0.173 Sum_probs=49.3
Q ss_pred HhhccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
.+.++|.+++|+|+.++.+.... ..|+..+.. .+.|+++|+||+|+.+ .....+..+.++ ....+++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCCeEEEE
Confidence 35889999999999888765544 344433322 4789999999999963 222222333333 234589999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 148 SA~~g 152 (298)
T PRK00098 148 SAKEG 152 (298)
T ss_pred eCCCC
Confidence 99875
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=98.42 E-value=8.2e-07 Score=67.86 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
++++|.+|+|||||+|+|.+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred EEEECCCCCCHHHHHHHhcc
Confidence 78999999999999999975
No 369
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.40 E-value=9.7e-07 Score=64.43 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=37.8
Q ss_pred HHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC----cccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD----RIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (170)
Q Consensus 6 ~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 79 (170)
.+++..... ..++++|.+|+|||||+|++.+......+..+. ..-.|..... +... .-.++||||-.
T Consensus 112 ~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~--~~~liDtPG~~ 182 (245)
T TIGR00157 112 KELIEALQN---RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFH--GGLIADTPGFN 182 (245)
T ss_pred HHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcC--CcEEEeCCCcc
Confidence 344444332 367899999999999999997632221111111 1112333333 3332 23799999943
No 370
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.37 E-value=8.8e-07 Score=62.13 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=50.8
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHh---Cccccc
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYL---DLKKLD 156 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~---~~~~~~ 156 (170)
+..++..+++++|++++|+|++++.... ...+... ..+.|+++|+||+|+.++.. ..+..... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~-----~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSL-----IPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCcc-----chhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 5778888899999999999998764211 1111111 14679999999999975332 32232222 001111
Q ss_pred cceeEEEeeeccCC
Q 030848 157 ERVCMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~~~~~~~Sa~~g 170 (170)
....+++++||++|
T Consensus 97 ~~~~~i~~vSA~~~ 110 (190)
T cd01855 97 LKPKDVILISAKKG 110 (190)
T ss_pred CCcccEEEEECCCC
Confidence 11235899999876
No 371
>PRK13796 GTPase YqeH; Provisional
Probab=98.36 E-value=9.8e-07 Score=68.01 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=35.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 78 (170)
..++.++|.+|+|||||+|++................|.+......+...+ ...++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 357999999999999999999753211111111122232333333333322 2479999994
No 372
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.35 E-value=9.2e-06 Score=54.79 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=34.9
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D 136 (170)
+..+.++||+|..... ..++..+|-++++..++- .+............ --++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k~~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIKAGIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhhhhHhhh------cCEEEEeCCC
Confidence 4679999998854222 236788898999886651 12111111122222 2389999987
No 373
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.34 E-value=1.6e-06 Score=60.87 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=45.6
Q ss_pred EEEEEEcCCCCcchhh---HH---HHhhcc---CEEEEEEeCC---Ccc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848 69 KLVFWDLGGQPGLRSI---WE---KYYEEA---HAVVFVIDAA---CPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (170)
Q Consensus 69 ~~~i~D~~G~~~~~~~---~~---~~~~~~---~~~i~v~d~~---~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~ 135 (170)
.+-++|+|||-+.... .. ..+..- -+++|++|.. +.. .+......+..... -..|-|=+++|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhHH
Confidence 6899999998765331 11 122221 2455666543 111 12333333333333 477889999999
Q ss_pred CccccCCHHHHHhHhC
Q 030848 136 DLPDAVSADELARYLD 151 (170)
Q Consensus 136 D~~~~~~~~~~~~~~~ 151 (170)
|+......+++.+++.
T Consensus 175 DLlk~~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLN 190 (273)
T ss_pred HHhhhhhHHHHHHhcC
Confidence 9988766666666665
No 374
>PRK12289 GTPase RsgA; Reviewed
Probab=98.34 E-value=1.5e-06 Score=66.46 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
++++|++|+|||||+|+|..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcC
Confidence 79999999999999999975
No 375
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.31 E-value=1e-05 Score=54.57 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+..+||.+.|+||+||||++.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4578999999999999999999965
No 376
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.27 E-value=2.7e-06 Score=57.85 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=44.7
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeec
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
.++++|++++|+|++++..-. ...+...+... ..+.|+++++||+|+.++....+....++. ......+++||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence 358899999999999873321 11222222221 245899999999999654333333333331 11222578898
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 78 ~~~ 80 (157)
T cd01858 78 NNP 80 (157)
T ss_pred ccc
Confidence 864
No 377
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.24 E-value=2.2e-05 Score=55.40 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=58.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCC---------CCC-------cccCCcceeEEEE-----------------Ee
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGL---------PPD-------RIVPTVGLNIGRI-----------------EV 65 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~-----------------~~ 65 (170)
.++++|++|+||||.+-++....... +. +.. .+....++..... ..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 57899999999999998885432211 11 000 0111222222111 11
Q ss_pred cCeEEEEEEcCCCCcchh----hHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 66 SNSKLVFWDLGGQPGLRS----IWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~----~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
++..+.++||||...... ....+.+ ..+-+++|++++.... ... ....+..... +-=+++||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~~----~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAFG----IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHSS----TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhccc----CceEEEEeecCCC
Confidence 235799999999544321 2222222 4677888998875532 222 2222222211 1256799999754
No 378
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.23 E-value=2.1e-06 Score=62.16 Aligned_cols=89 Identities=24% Similarity=0.317 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------cchhhHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEKYY 89 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~~ 89 (170)
..++.++|-|.+||||++..+.+..++++....+......+ ...+++-++++.|+||-- ..........
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG----~~~y~gaKiqlldlpgiiegakdgkgrg~qviava 134 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPG----VIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVA 134 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecc----eEeccccceeeecCcchhcccccCCCCccEEEEEe
Confidence 35899999999999999999988666666554443322222 356778899999999921 1222334456
Q ss_pred hccCEEEEEEeCCCcccHHH
Q 030848 90 EEAHAVVFVIDAACPSRFED 109 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~ 109 (170)
+.|+.+++|.|+-.|-+-..
T Consensus 135 rtcnli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 135 RTCNLIFIVLDVLKPLSHKK 154 (358)
T ss_pred ecccEEEEEeeccCcccHHH
Confidence 88999999999988855433
No 379
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.23 E-value=1.8e-06 Score=65.60 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=48.6
Q ss_pred eEEEEEEcCCCCcchhhHHH--HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHH
Q 030848 68 SKLVFWDLGGQPGLRSIWEK--YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 145 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~ 145 (170)
.-+.++|++|+|.+....-- --+-.|+..+++-++... ....++.+...-..+.|+++|.+|+|..++..++|
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-----iGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqE 293 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-----IGMTKEHLGLALALHVPVFVVVTKIDMCPANILQE 293 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-----eeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHHH
Confidence 35899999999988653322 224568888888766431 11111222211124789999999999988666555
Q ss_pred HHhHh
Q 030848 146 LARYL 150 (170)
Q Consensus 146 ~~~~~ 150 (170)
-.+.+
T Consensus 294 tmKll 298 (641)
T KOG0463|consen 294 TMKLL 298 (641)
T ss_pred HHHHH
Confidence 44443
No 380
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.22 E-value=3.3e-06 Score=63.07 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 81 (170)
-.++++|++|+|||||+|.+.+......+.... .....+......+.... ...++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 578999999999999999997632222111111 01111111112233321 2368999997654
No 381
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.22 E-value=2.3e-06 Score=59.06 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=46.5
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeE
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM 161 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (170)
.......++++|.+++|+|++++...... . +.... .+.|.++++||+|+.++....+..+.++ .....
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~ 77 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL--GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEK 77 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh--cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCe
Confidence 34445567899999999999876432211 1 11111 2468999999999965422222223333 12245
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
++.+||++|
T Consensus 78 vi~iSa~~~ 86 (171)
T cd01856 78 VLFVNAKSG 86 (171)
T ss_pred EEEEECCCc
Confidence 788999875
No 382
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.21 E-value=3.8e-06 Score=56.98 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=42.1
Q ss_pred CEEEEEEeCCCcccHHHHHHHHH-HHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALE-KVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++++|+|++++.+.... ++. .... ..+.|+++++||+|+.++....+....++. .....++++||++|
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~----~~~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRH----SYPTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHh----hCCceEEEEeccCC
Confidence 689999999887654321 222 1222 246899999999999654322222222221 12356889999876
No 383
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.19 E-value=3.1e-05 Score=58.66 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.-.++++|++|+||||++..+...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457889999999999999998543
No 384
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1.6e-06 Score=69.16 Aligned_cols=129 Identities=20% Similarity=0.156 Sum_probs=85.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhccc------CCCC-CCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSN------VEGL-PPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~------~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 81 (170)
+.-+|.++-+-.+||||+-++++..... +... ... ...-|+......+.+.+.++.++||||+-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 3456889999999999999998432111 1111 000 0111333333356667889999999999999
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhH
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARY 149 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~ 149 (170)
.-...+.++..|++++|+|+...-. ......+.+... -+.|-+.++||+|-..+....-+...
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa~~~~~l~~i 180 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRMGASPFRTLNQI 180 (721)
T ss_pred EEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhcCCChHHHHHHH
Confidence 8888888899999999999864311 223334444433 37899999999998876654444333
No 385
>PRK12288 GTPase RsgA; Reviewed
Probab=98.16 E-value=1.2e-05 Score=61.56 Aligned_cols=76 Identities=21% Similarity=0.107 Sum_probs=51.8
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
..++|.+++|++.+++.++..+..|+.... ..+.|.++|+||+|+.+....+...+.... +.....+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 466899999999988888888777765442 246889999999999764322222222211 11344689999998
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 192 tg 193 (347)
T PRK12288 192 TG 193 (347)
T ss_pred CC
Confidence 75
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.4e-05 Score=60.31 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-.++++|++|+||||++..|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999965
No 387
>PRK14974 cell division protein FtsY; Provisional
Probab=98.14 E-value=4.8e-06 Score=63.30 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=61.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCC----CCCCc-----------ccCCcceeEEEE-----------------
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDR-----------IVPTVGLNIGRI----------------- 63 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~----------------- 63 (170)
+...|+++|++|+||||.+..+......... ...+. +....++.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3567999999999999988877432111100 00000 001111111100
Q ss_pred EecCeEEEEEEcCCCCcc----hhhHHHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848 64 EVSNSKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (170)
Q Consensus 64 ~~~~~~~~i~D~~G~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~ 137 (170)
...+..+.++||+|.... ......+. -..|.+++|+|+.... +.......+.... ..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~----~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV----GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC----CCCEEEEeeecC
Confidence 112456999999995432 12222222 2468889999986542 2222222222211 124788999998
Q ss_pred ccc
Q 030848 138 PDA 140 (170)
Q Consensus 138 ~~~ 140 (170)
...
T Consensus 292 ~~~ 294 (336)
T PRK14974 292 DAK 294 (336)
T ss_pred CCC
Confidence 653
No 388
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.12 E-value=5.3e-06 Score=61.65 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=47.7
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
......++.+|++|+|+|+..+.+.+.. .+.... .+.|+++|+||+|+.++....+..+.++ ....++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE-----EKGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH-----HcCCeE
Confidence 3455667899999999999876543221 122222 2568999999999965322233333333 122467
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+.+||++|
T Consensus 81 i~iSa~~~ 88 (276)
T TIGR03596 81 LAINAKKG 88 (276)
T ss_pred EEEECCCc
Confidence 88999875
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.12 E-value=4.4e-06 Score=61.94 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..+++|.+|+|||||+|+|..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 568999999999999999954
No 390
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.11 E-value=1.2e-05 Score=55.57 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=38.8
Q ss_pred CeEEEEEEcCCCCcch----hhHHHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQPGLR----SIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~----~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+..+.++|+||..... .....+. ...+.+++|+|+.... ...+....+..... ..-+++||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~----~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG----ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC----CCEEEEECCcCCC
Confidence 4568999999964322 2122222 2489999999986442 23333344433221 2567779999765
No 391
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.11 E-value=6.9e-05 Score=55.59 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=38.9
Q ss_pred cCeEEEEEEcCCCCcchhh----HHHH---hh-----ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848 66 SNSKLVFWDLGGQPGLRSI----WEKY---YE-----EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~~----~~~~---~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n 133 (170)
.+..+.++||||....... ...+ .+ .+|.+++|+|++-. .+.. .....+.... ..--+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEEEE
Confidence 3468999999995543221 1111 11 27899999999743 2222 2223332221 13578999
Q ss_pred CCCccc
Q 030848 134 KQDLPD 139 (170)
Q Consensus 134 K~D~~~ 139 (170)
|.|...
T Consensus 226 KlDe~~ 231 (272)
T TIGR00064 226 KLDGTA 231 (272)
T ss_pred ccCCCC
Confidence 999755
No 392
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.11 E-value=5.2e-05 Score=58.76 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=41.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhh--cccCCC---------------------CCCCcccCCcceeEEEEEecCeEE
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSV--YSNVEG---------------------LPPDRIVPTVGLNIGRIEVSNSKL 70 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~--~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 70 (170)
+...+-|.||||..+|||||++++... -++..+ ++.+++-|..+.....-+.-..++
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence 557799999999999999999999321 111111 122233344444433333445789
Q ss_pred EEEEcCC
Q 030848 71 VFWDLGG 77 (170)
Q Consensus 71 ~i~D~~G 77 (170)
+++|+.|
T Consensus 94 RLiDCVG 100 (492)
T PF09547_consen 94 RLIDCVG 100 (492)
T ss_pred EEEeecc
Confidence 9999998
No 393
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.09 E-value=1.5e-05 Score=55.41 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=46.8
Q ss_pred eEEEEEEcCCCCcchhhH--HHH---hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848 68 SKLVFWDLGGQPGLRSIW--EKY---YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~--~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~ 142 (170)
....++.+.|-....... ... .-..+.++.|+|+.+-.........+..-+.... ++++||+|+.+...
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDEQ 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChhh
Confidence 468889999955554431 111 1246889999999765434444444444445443 99999999988663
Q ss_pred -HHHHHhHhC
Q 030848 143 -ADELARYLD 151 (170)
Q Consensus 143 -~~~~~~~~~ 151 (170)
.+...+.++
T Consensus 159 ~i~~~~~~ir 168 (178)
T PF02492_consen 159 KIERVREMIR 168 (178)
T ss_dssp -HHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 356665554
No 394
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.07 E-value=2.9e-06 Score=65.36 Aligned_cols=84 Identities=19% Similarity=0.267 Sum_probs=53.1
Q ss_pred CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-CCHHHHHhHh----Cc
Q 030848 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYL----DL 152 (170)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-~~~~~~~~~~----~~ 152 (170)
++.+..+...+.+.++++++|+|+.+... .|...+.... .+.|+++|+||+|+.++ ...+++.+.+ +.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 45677778888889999999999976542 1222222222 25789999999999753 3344444332 21
Q ss_pred cccccceeEEEeeeccCC
Q 030848 153 KKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 153 ~~~~~~~~~~~~~Sa~~g 170 (170)
.+.. ...++++||++|
T Consensus 123 ~g~~--~~~i~~vSAk~g 138 (360)
T TIGR03597 123 LGLK--PVDIILVSAKKG 138 (360)
T ss_pred cCCC--cCcEEEecCCCC
Confidence 1111 124889999886
No 395
>PRK00098 GTPase RsgA; Reviewed
Probab=98.07 E-value=1.5e-05 Score=59.83 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
..++++|++|+|||||+|++.+.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999763
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=0.00013 Score=58.40 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=59.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCC-C-----CCCCccc-----------CCcceeEEEE-----------EecCe
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVE-G-----LPPDRIV-----------PTVGLNIGRI-----------EVSNS 68 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-~-----~~~~~~~-----------~~~~~~~~~~-----------~~~~~ 68 (170)
.-.++++|++|+||||++..|........ + ...+.+. ...++..... ...+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 45788999999999999988854211110 0 0000100 1112211111 11356
Q ss_pred EEEEEEcCCCCcchhh----HHHHh-hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 69 KLVFWDLGGQPGLRSI----WEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 69 ~~~i~D~~G~~~~~~~----~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
.+.|+||+|....... ...+. ......++|++.+. ...+....+..+.. ..+.-+++||.|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 7999999995432211 11110 11234567777664 23344444333322 235679999999744
No 397
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.04 E-value=1.2e-05 Score=57.49 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=37.0
Q ss_pred eEEEEEEcCCCCcchh------hHHHHhhccCEEEEEEeC------CCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848 68 SKLVFWDLGGQPGLRS------IWEKYYEEAHAVVFVIDA------ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~------~~~~~~~~~~~~i~v~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~ 135 (170)
..+.++|+|||.++.. -+...+++.+.=+.++.. ++|..+-.....-..-.-. -+.|-|=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~---melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH---MELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh---hcccchhhhhHh
Confidence 4799999999876522 122334445544444433 3454443222211111112 356678889999
Q ss_pred Cccc
Q 030848 136 DLPD 139 (170)
Q Consensus 136 D~~~ 139 (170)
|+..
T Consensus 174 Dl~~ 177 (290)
T KOG1533|consen 174 DLLK 177 (290)
T ss_pred HHHH
Confidence 9854
No 398
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.02 E-value=8.1e-05 Score=53.31 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=38.3
Q ss_pred EEEEEEcCC-CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 69 KLVFWDLGG-QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 69 ~~~i~D~~G-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
.+.++||-- -+.+.+ ...+.+|.+|.|+|++.. ++. +.+.+.++.+..+ =.++.+|+||.|..
T Consensus 135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~-taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLR-TAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHH-HHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 577777753 333332 123679999999998743 222 2333444444332 26899999999954
No 399
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=9.8e-06 Score=63.77 Aligned_cols=141 Identities=17% Similarity=0.190 Sum_probs=88.1
Q ss_pred HHHHhhhccCcee-EEEEEcCCCCChHHHHHHHHhhcccCC----C--CCCCcc--cCCcceeEE--EE-----------
Q 030848 6 YGLWKYIFTKTEF-HVLILGIDKAGKTTLLEKLKSVYSNVE----G--LPPDRI--VPTVGLNIG--RI----------- 63 (170)
Q Consensus 6 ~~~~~~~~~~~~~-~i~vvG~~~~GKSsl~~~l~~~~~~~~----~--~~~~~~--~~~~~~~~~--~~----------- 63 (170)
+++...+.++.++ ++.++-+...|||||..++.....-+. + .+.+.. .+.-+++++ .+
T Consensus 7 d~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl 86 (842)
T KOG0469|consen 7 DQVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDL 86 (842)
T ss_pred HHHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHH
Confidence 5666677777666 588999999999999999843211111 1 011110 011111111 11
Q ss_pred -------EecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848 64 -------EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136 (170)
Q Consensus 64 -------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D 136 (170)
+..+..+.++|.||+..+.+..-..++-.|++++|+|.-+.-..+.. ..+.+.+. ..+.-+++.||+|
T Consensus 87 ~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~----ERIkPvlv~NK~D 161 (842)
T KOG0469|consen 87 KFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLVMNKMD 161 (842)
T ss_pred HHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHH----hhccceEEeehhh
Confidence 12245799999999999999888889999999999998765443321 12222222 2444578899999
Q ss_pred cc---ccCCHHHHHhHhC
Q 030848 137 LP---DAVSADELARYLD 151 (170)
Q Consensus 137 ~~---~~~~~~~~~~~~~ 151 (170)
-. -+.+.+++.+.++
T Consensus 162 RAlLELq~~~EeLyqtf~ 179 (842)
T KOG0469|consen 162 RALLELQLSQEELYQTFQ 179 (842)
T ss_pred HHHHhhcCCHHHHHHHHH
Confidence 43 2667777777776
No 400
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.98 E-value=1.5e-05 Score=61.42 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=61.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCC------CCCcc-----------cCCcceeEEEE-----------EecCe
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDRI-----------VPTVGLNIGRI-----------EVSNS 68 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------~~~~~-----------~~~~~~~~~~~-----------~~~~~ 68 (170)
.-.+.+|||+|+||||-+..+.....-.... +.+.+ ..-.++....+ ...+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5678999999999999998885532200010 00010 11111111111 11356
Q ss_pred EEEEEEcCCCCcch----hhHHHHhhcc--CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 69 KLVFWDLGGQPGLR----SIWEKYYEEA--HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 69 ~~~i~D~~G~~~~~----~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
.+.++||.|..... .....+++.+ .-+.+|++++.. .+++.+.+..+... . .-=+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-~----i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-P----IDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-C----cceeEEEcccccC
Confidence 89999999954432 2333444433 234556666633 45555555555221 1 1257789999643
No 401
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.97 E-value=4.4e-06 Score=65.58 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=37.3
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
..+..+.|.+||.|++||||.||.|.+........++.... .+ ..+. -...+.+.|+||
T Consensus 310 ~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTK---HF--QTi~-ls~~v~LCDCPG 368 (562)
T KOG1424|consen 310 RYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTK---HF--QTIF-LSPSVCLCDCPG 368 (562)
T ss_pred CCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcc---ee--EEEE-cCCCceecCCCC
Confidence 34456899999999999999999998743332222222111 11 1121 134578999999
No 402
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.95 E-value=2.2e-05 Score=58.68 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=47.6
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
......+..+|++|+|+|++++.+.+. ..+.... .+.|+++|+||+|+.+.....+..+.++ ....++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~v 83 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKA 83 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeE
Confidence 344556789999999999987754322 1122222 2578999999999965322233333333 123467
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+.+||++|
T Consensus 84 i~vSa~~~ 91 (287)
T PRK09563 84 LAINAKKG 91 (287)
T ss_pred EEEECCCc
Confidence 88898865
No 403
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.94 E-value=0.00017 Score=54.65 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=43.5
Q ss_pred eEEEEEEcCCCCcchhhHHHHhh--------ccCEEEEEEeCCCcccH-HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYYE--------EAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
....++.+.|-.+.......++. ..+.++.|+|+.+-... ........++.. . + ++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-A---D---~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-A---D---RILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-C---C---EEEEeccccC
Confidence 45788999997766555544422 25789999998753221 111111222322 2 2 8999999997
Q ss_pred ccCCHHHHHhHhC
Q 030848 139 DAVSADELARYLD 151 (170)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (170)
++. +.+.+.++
T Consensus 164 ~~~--~~~~~~l~ 174 (318)
T PRK11537 164 GEA--EKLRERLA 174 (318)
T ss_pred CHH--HHHHHHHH
Confidence 642 44444443
No 404
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.94 E-value=2.8e-05 Score=57.68 Aligned_cols=63 Identities=22% Similarity=0.425 Sum_probs=39.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EEec-CeEEEEEEcCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVS-NSKLVFWDLGG 77 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~D~~G 77 (170)
..++++.|+|-||+|||||+|++...+-...........|.+...+.. +.+. ...+.++||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 477999999999999999999996533322222222333333332221 3333 34588999999
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=0.00012 Score=56.74 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCC------CCCCC---------cccCCcceeEEEEE--------------ecCe
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVE------GLPPD---------RIVPTVGLNIGRIE--------------VSNS 68 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~~~~~---------~~~~~~~~~~~~~~--------------~~~~ 68 (170)
-+|+++|++|+||||++..|........ ..+.. .+....++...... ..+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 5799999999999999999954221100 01000 01111122211110 0135
Q ss_pred EEEEEEcCCCCcc----hhhHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 69 KLVFWDLGGQPGL----RSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 69 ~~~i~D~~G~~~~----~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
.+.|+||+|.... .......++ ..+-+++|+|++-. ..++......+.. . ..-=+++||.|...
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-~----~idglI~TKLDET~ 391 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-I----HIDGIVFTKFDETA 391 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-C----CCCEEEEEcccCCC
Confidence 7999999995332 122223322 35677888887532 2333333333322 1 12367889999755
No 406
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.92 E-value=0.00045 Score=42.32 Aligned_cols=97 Identities=22% Similarity=0.207 Sum_probs=56.3
Q ss_pred EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh-HHHHhhccCEEEEE
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-WEKYYEEAHAVVFV 98 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v 98 (170)
+++.|..|+||||+...+....... +.....++ .+.++|+++....... .......+|.++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------------g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v 65 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------------GKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIV 65 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------------CCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence 5788999999999999996533221 01111122 8899999986544331 13345678999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n 133 (170)
++.+... .........+..........+..+++|
T Consensus 66 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 66 TTPEALA-VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred cCCchhh-HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 8776443 333333322233332224455555554
No 407
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.90 E-value=0.00035 Score=53.01 Aligned_cols=78 Identities=24% Similarity=0.222 Sum_probs=48.4
Q ss_pred eEEEEEEcCCCCcchhhHHHHhh--------ccCEEEEEEeCCCcccHHH-HHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYYE--------EAHAVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
....++.+.|-.........+.. ..|+++-|+|+.+-..... ..+.+..-+... + ++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D---~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---D---VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---c---EEEEecccCC
Confidence 46788899996655444443332 3577899999875433221 222222222322 2 9999999999
Q ss_pred ccCCHHHHHhHhC
Q 030848 139 DAVSADELARYLD 151 (170)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (170)
++...+..++.++
T Consensus 159 ~~~~l~~l~~~l~ 171 (323)
T COG0523 159 DAEELEALEARLR 171 (323)
T ss_pred CHHHHHHHHHHHH
Confidence 8776667677666
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=4.7e-05 Score=59.56 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.-+++++|++|+||||++..|.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 409
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.88 E-value=0.00037 Score=54.91 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc-cCCCC-----CCCcc-----------cCCcceeEEEE-----------EecCeE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEGL-----PPDRI-----------VPTVGLNIGRI-----------EVSNSK 69 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~-----~~~~~-----------~~~~~~~~~~~-----------~~~~~~ 69 (170)
-.++++|++|+||||++..+..... ...+. ..+.+ ....++..... ...+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 3789999999999999888854322 00000 01110 00011111110 113467
Q ss_pred EEEEEcCCCCcch----hhHHHHhh---ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 70 LVFWDLGGQPGLR----SIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 70 ~~i~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+.++||||..... .....+++ ...-+.+|++++.. ...+...+..+. .. . +--+++||.|...
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~~---~-~~~vI~TKlDet~ 371 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-RL---P-LDGLIFTKLDETS 371 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-CC---C-CCEEEEecccccc
Confidence 9999999954332 22333333 23456777887633 233444443332 11 1 2268899999744
No 410
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00011 Score=57.42 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...++++|++|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999864
No 411
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.84 E-value=0.00013 Score=40.47 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=30.5
Q ss_pred hccCEEEEEEeCCCcc--cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848 90 EEAHAVVFVIDAACPS--RFEDSKTALEKVLRNEDLQGAPLLILANKQD 136 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D 136 (170)
+-.++++|++|++..+ +.++....+.++.... .+.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 4568999999998654 5677777888887654 4899999999998
No 412
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.83 E-value=0.00083 Score=52.90 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=37.7
Q ss_pred CeEEEEEEcCCCCcc----hhhHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQPGL----RSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~----~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+..+.|+||||.... ......+ .-..+.+++|+|+... ++.......+..... ..=+++||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~----i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG----LTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC----CCEEEEeCccCcc
Confidence 356999999995332 1212111 2247888999998643 444444444432221 2356789999643
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00012 Score=56.46 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.-.++++|++|+||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998853
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=97.81 E-value=0.00029 Score=55.45 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCCCcc----hhhHHHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+..+.|+||+|.-.. ......+. -..+.+++|+|+... ++.......+..... .--+++||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~~----i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEALG----LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhCC----CCEEEEeCccCcc
Confidence 357999999994432 22222221 246778999997643 344444444432211 2356779999643
No 415
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.80 E-value=0.00089 Score=43.96 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=24.5
Q ss_pred HHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+...........++++|++|+|||++++.+..
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~ 41 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLARAIAN 41 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 33333343456799999999999999999976
No 416
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.79 E-value=0.0003 Score=53.86 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=47.8
Q ss_pred eEEEEEEcCCCCcchhhHHHHh-------hccCEEEEEEeCCCccc--H--------------------HHHHHH-HHHH
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYY-------EEAHAVVFVIDAACPSR--F--------------------EDSKTA-LEKV 117 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~-------~~~~~~i~v~d~~~~~~--~--------------------~~~~~~-~~~~ 117 (170)
....++.+.|-.........+. -..++++.|+|+.+-.. + ...... ..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4678999999776655554431 14678999999864211 0 001111 1222
Q ss_pred HcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 118 LRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 118 ~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
... =++++||+|+.++...+++.+.++
T Consensus 173 -~~A------D~IvlnK~Dl~~~~~l~~~~~~l~ 199 (341)
T TIGR02475 173 -ACA------DLVILNKADLLDAAGLARVRAEIA 199 (341)
T ss_pred -HhC------CEEEEeccccCCHHHHHHHHHHHH
Confidence 222 289999999988777777777665
No 417
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.77 E-value=5.4e-05 Score=49.50 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
--+++.|++|+|||++++.+..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999976
No 418
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0001 Score=63.99 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=63.7
Q ss_pred EEEEcCCCCChHHHHHHHHhhc--ccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----C----CcchhhHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKSVY--SNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----Q----PGLRSIWEKYY 89 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~----~~~~~~~~~~~ 89 (170)
.+|||++|+||||++..-.... ....+........|..|++ +....-.++||.| + +.....|..++
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCc----ccccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 5799999999999987652200 0000000001111222211 2334578889999 2 23344565442
Q ss_pred ---------hccCEEEEEEeCCCccc----H-----HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 90 ---------EEAHAVVFVIDAACPSR----F-----EDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 90 ---------~~~~~~i~v~d~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+-.|+||+.+|+.+--+ . ..++.-+.++..... -..|+.+++||.|+..
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEecccccc
Confidence 34899999998853211 1 112223334433332 4689999999999965
No 419
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.75 E-value=0.00066 Score=45.20 Aligned_cols=102 Identities=14% Similarity=0.199 Sum_probs=60.5
Q ss_pred EEEcCCCCChHHHHHHHHhhcccCCCC----CCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEE
Q 030848 21 LILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (170)
Q Consensus 21 ~vvG~~~~GKSsl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 96 (170)
+.-|.+|+|||++.-.+.......... ..+...+.. +..+.++|+|+..... ....+..+|.++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~~~--~~~~l~~aD~vv 71 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGISDN--VLDFFLAADEVI 71 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCCHH--HHHHHHhCCeEE
Confidence 355778999999977774422211100 000000010 1678999999854332 345678999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848 97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (170)
Q Consensus 97 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~ 137 (170)
++.+.+. .++..+...+..+.... ...++.+++|+.+-
T Consensus 72 iv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 72 VVTTPEP-TSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred EEcCCCh-hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 9998763 34444444444443322 35678899999974
No 420
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.73 E-value=0.00038 Score=54.94 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=60.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCC----CCCCcccC-----------CcceeEEEE---------------Ee
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRIVP-----------TVGLNIGRI---------------EV 65 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----~~~~~~~~-----------~~~~~~~~~---------------~~ 65 (170)
+...|+++|.+|+||||.+..+......... ...+.+.+ ..++..... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 3567899999999999999888432221100 00001100 111111110 00
Q ss_pred cCeEEEEEEcCCCCcchhh----HHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 66 SNSKLVFWDLGGQPGLRSI----WEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
....+.|+||+|....... .... .-.+|.+++|+|++.. ++.......+.... ...-+++||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---q~av~~a~~F~~~l----~i~gvIlTKlD~~a 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---QQAKNQAKAFHEAV----GIGGIIITKLDGTA 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---HHHHHHHHHHHhcC----CCCEEEEecccCCC
Confidence 1347999999995543221 1111 2357889999998754 22222233322211 12356779998643
No 421
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=3.7e-05 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+|+|.|++||||||+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 422
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.00037 Score=54.19 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=56.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-----CCccc-----------CCcceeEEEEE-------------
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-----PDRIV-----------PTVGLNIGRIE------------- 64 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~------------- 64 (170)
.++...|+++|-.||||||.+-.+...... .+.. .+.+. ..+++.++...
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence 345678999999999999998887443222 1110 01111 12222222111
Q ss_pred ----ecCeEEEEEEcCCCCcchhhH----HH--HhhccCEEEEEEeCCCcccHHHHHHHHHHH
Q 030848 65 ----VSNSKLVFWDLGGQPGLRSIW----EK--YYEEAHAVVFVIDAACPSRFEDSKTALEKV 117 (170)
Q Consensus 65 ----~~~~~~~i~D~~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 117 (170)
.....+.|+||+|.-...... .. -.-+.|=+|+|+|+.-...-.+....|.+-
T Consensus 176 ~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~ 238 (451)
T COG0541 176 EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA 238 (451)
T ss_pred HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh
Confidence 123479999999954443211 11 123578899999987554333444444433
No 423
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.0006 Score=53.01 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccC---CCC-----CCCc-----------ccCCcceeEEEEE-----------ec
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNV---EGL-----PPDR-----------IVPTVGLNIGRIE-----------VS 66 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~---~~~-----~~~~-----------~~~~~~~~~~~~~-----------~~ 66 (170)
.-.++++|++|+||||.+..+....... .+. ..+. +....++.+.... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 3578999999999999998885432210 000 0000 1111222222111 13
Q ss_pred CeEEEEEEcCCCCcch----hhHHHHhhcc--C-EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQPGLR----SIWEKYYEEA--H-AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~----~~~~~~~~~~--~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+..+.++||+|..... .....+++.. + -+++|+|++.. ...+.+.+..+... .+-=+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence 5689999999943221 1222333322 2 57889998754 33444444444211 12357788888643
No 424
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.63 E-value=0.0007 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
+.-.++++|+.|+|||||++.+.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3447899999999999999999873
No 425
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.61 E-value=0.0019 Score=40.88 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=56.4
Q ss_pred EcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeC
Q 030848 23 LGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 101 (170)
Q Consensus 23 vG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 101 (170)
=+..|+||||..-.+........+... .. + ..+ .....+.++|+|+..... ....+..+|.++++.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~-~l-----~---d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~ 74 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRV-LL-----V---DLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQ 74 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcE-EE-----E---ECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecC
Confidence 355789999998777543222110000 00 0 000 011278999999865433 33456889999999976
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030848 102 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134 (170)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK 134 (170)
+. .+..........+......+..++.+++|+
T Consensus 75 ~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 75 DL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred Ch-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 63 345555555555543322114567788875
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00024 Score=59.33 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.++++|+.|+||||.+..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 36889999999999999999653
No 427
>PRK08118 topology modulation protein; Reviewed
Probab=97.61 E-value=5.9e-05 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.||+|+|++|||||||...+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999965
No 428
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.60 E-value=0.0035 Score=43.11 Aligned_cols=66 Identities=9% Similarity=0.000 Sum_probs=43.3
Q ss_pred EEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 69 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
.+.++|+|+..... ....+..+|.+|++++++. .+...+......+... ......+++|+.|....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence 79999999865433 3344688999999998764 3445554544444331 23457789999987543
No 429
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.60 E-value=5.8e-05 Score=52.45 Aligned_cols=22 Identities=50% Similarity=0.706 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+||+++|+|||||||+.+.|..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~ 22 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAK 22 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999976
No 430
>PRK07261 topology modulation protein; Provisional
Probab=97.59 E-value=6.2e-05 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+|+|+|++|||||||...+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 431
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.58 E-value=7.8e-05 Score=42.37 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..++.|+.||||||++.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999954
No 432
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.58 E-value=0.0015 Score=41.00 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=48.4
Q ss_pred EEEEc-CCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848 20 VLILG-IDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (170)
Q Consensus 20 i~vvG-~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 97 (170)
|.+.| ..|+||||+...+...... .+. ....++.. ...+.++|+|+...... ...+..+|.+++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~-----------~vl~~d~d~~~d~viiD~p~~~~~~~--~~~l~~ad~viv 67 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGK-----------RVLLIDLDPQYDYIIIDTPPSLGLLT--RNALAAADLVLI 67 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCC-----------cEEEEeCCCCCCEEEEeCcCCCCHHH--HHHHHHCCEEEE
Confidence 45666 5689999998888543221 110 01111111 15789999998654432 256688999999
Q ss_pred EEeCCCcccHHHHHHHHH
Q 030848 98 VIDAACPSRFEDSKTALE 115 (170)
Q Consensus 98 v~d~~~~~~~~~~~~~~~ 115 (170)
+++.+ ..++........
T Consensus 68 ~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 68 PVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred eccCC-HHHHHHHHHHHH
Confidence 99775 334455444443
No 433
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.57 E-value=7.3e-05 Score=53.63 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-+.++|++|||||||+|.+.+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999764
No 434
>PF05729 NACHT: NACHT domain
Probab=97.53 E-value=0.00039 Score=47.10 Aligned_cols=20 Identities=45% Similarity=0.591 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
++|.|++|+|||+++..+..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999999865
No 435
>PRK01889 GTPase RsgA; Reviewed
Probab=97.52 E-value=0.00055 Score=52.79 Aligned_cols=73 Identities=22% Similarity=0.186 Sum_probs=44.5
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
..++|.+++|++++.+-....+..++..... .+.+.++|+||+|+.+. .++..+.+... ....+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5788999999999744333333333333222 46677899999999754 22222222211 335678999998
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 181 ~g 182 (356)
T PRK01889 181 DG 182 (356)
T ss_pred CC
Confidence 75
No 436
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.51 E-value=0.00021 Score=54.83 Aligned_cols=63 Identities=27% Similarity=0.286 Sum_probs=46.2
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
...+..+|+||.|+|+.+|.+-.. .+.-..+++.. .+...|+|+||+|+.+.+..+....++.
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~-~~vE~~V~~~~--gnKkLILVLNK~DLVPrEv~e~Wl~YLr 203 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRC-PEVEEAVLQAH--GNKKLILVLNKIDLVPREVVEKWLVYLR 203 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCC-hhHHHHHHhcc--CCceEEEEeehhccCCHHHHHHHHHHHH
Confidence 334567999999999999865321 22222333322 3578999999999999999999999988
No 437
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.49 E-value=0.0001 Score=48.99 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
|+++|++|||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999974
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.00032 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.++++|++|+||||.+..|...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999999653
No 439
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.00045 Score=51.14 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=61.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccC------CCCCCC---------cccCCcceeEEEE--------------EecC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNV------EGLPPD---------RIVPTVGLNIGRI--------------EVSN 67 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~------~~~~~~---------~~~~~~~~~~~~~--------------~~~~ 67 (170)
.-+++++|++|+||||++..+....... ...... .+....+...... ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3689999999999999998885432110 000000 1111122221110 0124
Q ss_pred eEEEEEEcCCCCcc----hhhHHHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 68 SKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 68 ~~~~i~D~~G~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
..+.++||||.... ...+..++ ...+-+++|+|++.. .++.......+.. -.+-=+++||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCC
Confidence 68999999995432 22222222 235678889987632 2333344333321 122367889999755
No 440
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00011 Score=52.09 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
=.++++|++|||||||+.++-+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3678999999999999999954
No 441
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.43 E-value=0.00017 Score=55.50 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=27.5
Q ss_pred HHHHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 6 ~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.++=..-..++.+.+.+||.|++||||++|.|..
T Consensus 296 RQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~ 329 (572)
T KOG2423|consen 296 RQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRK 329 (572)
T ss_pred HHHHhhccCccceeeeeecCCCCchHHHHHHHhh
Confidence 3333334467899999999999999999999975
No 442
>PRK13796 GTPase YqeH; Provisional
Probab=97.42 E-value=0.0002 Score=55.36 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=44.6
Q ss_pred cchhhHHHHhhccC-EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-CCHHHHHhHhC----cc
Q 030848 80 GLRSIWEKYYEEAH-AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLD----LK 153 (170)
Q Consensus 80 ~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-~~~~~~~~~~~----~~ 153 (170)
.+....... ...+ .+++|+|+.+... . |...+.... .+.|+++|+||+|+.+. ...+++.+.++ ..
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~~--s---~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFNG--S---WIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCCC--c---hhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 344444333 4445 8999999987531 1 111222211 25689999999999753 23333333322 11
Q ss_pred ccccceeEEEeeeccCC
Q 030848 154 KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 154 ~~~~~~~~~~~~Sa~~g 170 (170)
+. ....++.+||++|
T Consensus 130 g~--~~~~v~~vSAk~g 144 (365)
T PRK13796 130 GL--RPVDVVLISAQKG 144 (365)
T ss_pred CC--CcCcEEEEECCCC
Confidence 11 1125788999875
No 443
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.42 E-value=0.0019 Score=48.34 Aligned_cols=113 Identities=14% Similarity=0.229 Sum_probs=64.5
Q ss_pred HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------
Q 030848 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP------- 79 (170)
Q Consensus 7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------- 79 (170)
.++.+=.+....+++++|++|-|||++++++...++...+.. ....++..+.+|...
T Consensus 51 ~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~----------------~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 51 ELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED----------------AERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred HHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC----------------CccccEEEEecCCCCChHHHHH
Confidence 444443344556899999999999999999987443322110 011244455555411
Q ss_pred -----------------cchhhHHHHhhccCEEEEEEeCCC---cccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848 80 -----------------GLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (170)
Q Consensus 80 -----------------~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~ 135 (170)
.........++...+=++++|=-. ..+....+..+..+......-+.|+|.++++-
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 112233356678888899997532 12233333333333333333578999998753
No 444
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.41 E-value=0.00031 Score=53.93 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=35.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
++.+++.|+|-|++||||++|++.....=..+..+ .-|..+ ..-.-+..+.++|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p---GvT~sm---qeV~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP---GVTRSM---QEVKLDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc---cchhhh---hheeccCCceeccCCc
Confidence 57799999999999999999999651110000000 011111 1122356789999999
No 445
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.41 E-value=0.00018 Score=41.93 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
|+++|++|+||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999976
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00016 Score=52.32 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCC
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~ 46 (170)
-+.++|++|+|||||++.+.+......+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3689999999999999999875444433
No 447
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.00033 Score=50.48 Aligned_cols=69 Identities=19% Similarity=0.063 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 86 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 86 (170)
-.+.++|++|||||||.+.+.+...+..+.-.-.-.+.....-.......+++.+-|-.+.-+.+....
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~ 102 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVG 102 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHH
Confidence 468899999999999999998744433322110000000000001224556677777777444443333
No 448
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.37 E-value=0.00011 Score=50.12 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
||+|+|.+++|||||++.|..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999976
No 449
>PRK06217 hypothetical protein; Validated
Probab=97.36 E-value=0.00019 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+|+|+|.+||||||+..+|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999965
No 450
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.00077 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.--|.++|-.|+||||.+-.+..
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHH
Confidence 34578999999999999988844
No 451
>PRK01889 GTPase RsgA; Reviewed
Probab=97.33 E-value=0.00031 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-+++++|.+|+|||||+|.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47899999999999999999764
No 452
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.32 E-value=0.00021 Score=47.16 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-.++|+|+.|+|||||++.+.+
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEEccCCCccccceeeecc
Confidence 3679999999999999999977
No 453
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.31 E-value=0.00066 Score=53.76 Aligned_cols=70 Identities=24% Similarity=0.267 Sum_probs=54.3
Q ss_pred hhccCEEEEEEeCCCcccHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 89 YEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
+..+|+|+.++|+.+|--|. ++..+.... .+....+++.||+||..+.......+++. .+.++++..|
T Consensus 172 lErSDivvqIVDARnPllfr~~dLe~Yvke~-----d~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni~~vf~S 241 (562)
T KOG1424|consen 172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEV-----DPSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNIPVVFFS 241 (562)
T ss_pred HhhcceEEEEeecCCccccCChhHHHHHhcc-----ccccceEEEEehhhcCCHHHHHHHHHHHH-----hcCceEEEEe
Confidence 46899999999999997663 333332222 13466899999999999999999999998 6668898888
Q ss_pred cc
Q 030848 167 GY 168 (170)
Q Consensus 167 a~ 168 (170)
|+
T Consensus 242 A~ 243 (562)
T KOG1424|consen 242 AL 243 (562)
T ss_pred cc
Confidence 86
No 454
>PRK03839 putative kinase; Provisional
Probab=97.31 E-value=0.00023 Score=49.40 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999955
No 455
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.28 E-value=0.00032 Score=49.86 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=22.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++...|+++|++|||||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345677999999999999999999754
No 456
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.27 E-value=0.00028 Score=48.62 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
+|++.|++|+||||+++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999999663
No 457
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.27 E-value=0.00027 Score=49.02 Aligned_cols=21 Identities=48% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+.++|++|+|||||+|-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 678999999999999999966
No 458
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.25 E-value=0.00035 Score=49.69 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=23.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
..+...|++.|++|||||||.+.|...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999999999999664
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.23 E-value=0.0003 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|++|+||||+++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999653
No 460
>PRK14530 adenylate kinase; Provisional
Probab=97.22 E-value=0.00032 Score=50.21 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+|+++|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999954
No 461
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.21 E-value=0.00034 Score=45.36 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHhh
Q 030848 20 VLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~ 40 (170)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999653
No 462
>PRK06547 hypothetical protein; Provisional
Probab=97.21 E-value=0.00068 Score=46.87 Aligned_cols=28 Identities=36% Similarity=0.366 Sum_probs=23.5
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
........|+|.|++||||||+.+.+..
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455677888999999999999999965
No 463
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.21 E-value=0.00054 Score=47.39 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=34.4
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
|++++|+|+.++.+-.. ......+ . ....+.|+++++||+|+.++....+..+.++
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~-~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~ 56 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAV-L-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLR 56 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHH-H-hccCCCCEEEEEehhhcCCHHHHHHHHHHHH
Confidence 78999999988643221 1111121 1 1113579999999999976555555555554
No 464
>PRK08233 hypothetical protein; Provisional
Probab=97.20 E-value=0.00041 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
..-|++.|.+||||||+.+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999653
No 465
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.20 E-value=0.00034 Score=46.50 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHhh
Q 030848 20 VLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~ 40 (170)
|+++|++|+||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999764
No 466
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.20 E-value=0.00033 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|++||||||+.+.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999663
No 467
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.18 E-value=0.00039 Score=45.30 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999987
No 468
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.17 E-value=0.00039 Score=49.73 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
-.++++|+.|+|||||++.+.+...
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 3678999999999999999987533
No 469
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.17 E-value=0.00042 Score=49.28 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998743
No 470
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.17 E-value=0.00041 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999998743
No 471
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.17 E-value=0.0004 Score=50.83 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
-++++|+.|+|||||++++.+....
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 4689999999999999999774443
No 472
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.17 E-value=0.00086 Score=48.46 Aligned_cols=26 Identities=38% Similarity=0.369 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+..-+++.|++|||||||++.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999654
No 473
>PRK14532 adenylate kinase; Provisional
Probab=97.16 E-value=0.00041 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++|+++|+|||||||+..++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999954
No 474
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.15 E-value=0.00046 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
=.++++|+.|+|||||++.+.+..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998743
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.15 E-value=0.00038 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHhh
Q 030848 20 VLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~ 40 (170)
|+++|++|||||||.+.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999664
No 476
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.15 E-value=0.00045 Score=48.98 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 477
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.15 E-value=0.003 Score=48.42 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
+...+|+|+|++|||||||++.+...
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 35678999999999999999999764
No 478
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00038 Score=49.55 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 88999999999999999998743
No 479
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00044 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998743
No 480
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.14 E-value=0.00047 Score=48.28 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998743
No 481
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.14 E-value=0.00046 Score=44.92 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-.++++|++|+|||+++..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999976
No 482
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.14 E-value=0.00046 Score=49.21 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998743
No 483
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.13 E-value=0.0005 Score=49.25 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
-.++++|+.|+|||||++.+.+...
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678999999999999999987533
No 484
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00049 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
=.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998743
No 485
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.0005 Score=49.71 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
=.++++|+.|+|||||++.+.+..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999987543
No 486
>PRK13949 shikimate kinase; Provisional
Probab=97.13 E-value=0.00048 Score=47.45 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+|+++|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 487
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.0005 Score=49.03 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998743
No 488
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.12 E-value=0.0071 Score=43.99 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.2
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....+--++++-|+.|+||||+++++..
T Consensus 47 l~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 47 LQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred HcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 3455677899999999999999999976
No 489
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.12 E-value=0.00043 Score=43.90 Aligned_cols=21 Identities=43% Similarity=0.406 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030848 18 FHVLILGIDKAGKTTLLEKLK 38 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~ 38 (170)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999974
No 490
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.12 E-value=0.00079 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+...-|+|.|++||||||+++.+...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 355688999999999999999888543
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.12 E-value=0.00087 Score=46.87 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=22.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
..-.++++|++||||||+++.+.+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34679999999999999999997743
No 492
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.12 E-value=0.00049 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999998743
No 493
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.12 E-value=0.00045 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLK 38 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~ 38 (170)
+.-.++++|+.|+|||||++.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999999985
No 494
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.12 E-value=0.00054 Score=48.80 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 467999999999999999998743
No 495
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.12 E-value=0.00056 Score=48.91 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
-.++++|+.|+|||||++.+.+...
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4678999999999999999987543
No 496
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.11 E-value=0.013 Score=39.20 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHhh
Q 030848 20 VLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~ 40 (170)
+++.|++|+|||+++..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999663
No 497
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.11 E-value=0.0005 Score=49.30 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
=.++++|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998743
No 498
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00056 Score=47.45 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
-.++++|+.|+|||||++.+.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999987433
No 499
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.11 E-value=0.00041 Score=48.27 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|++||||||+++++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999963
No 500
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0017 Score=51.21 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=73.5
Q ss_pred hHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHh-hcccCCC-------CCCCcc----------c-----CCccee--
Q 030848 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS-VYSNVEG-------LPPDRI----------V-----PTVGLN-- 59 (170)
Q Consensus 5 ~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~-~~~~~~~-------~~~~~~----------~-----~~~~~~-- 59 (170)
+..+..-...+..+.|++||-.|+||||-+..|.- ...+... ++.... . ..+++.
T Consensus 366 LRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfek 445 (587)
T KOG0781|consen 366 LRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEK 445 (587)
T ss_pred HHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhh
Confidence 34455555667889999999999999999877711 0000000 000000 0 000000
Q ss_pred -EE------------EEEecCeEEEEEEcCCCCc----chhhHHHHh--hccCEEEEEEeC-CCcccHHHHHHHHHHHHc
Q 030848 60 -IG------------RIEVSNSKLVFWDLGGQPG----LRSIWEKYY--EEAHAVVFVIDA-ACPSRFEDSKTALEKVLR 119 (170)
Q Consensus 60 -~~------------~~~~~~~~~~i~D~~G~~~----~~~~~~~~~--~~~~~~i~v~d~-~~~~~~~~~~~~~~~~~~ 119 (170)
+. ....++..+.++||+|... +......++ ...|.+|+|-.+ .-.++.+.+...-..+..
T Consensus 446 GYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~ 525 (587)
T KOG0781|consen 446 GYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALAD 525 (587)
T ss_pred hcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhc
Confidence 00 0112356899999999433 223333333 468889988755 233455655555555544
Q ss_pred CCCCCCCcEEEEeeCCCccc
Q 030848 120 NEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 120 ~~~~~~~~ii~v~nK~D~~~ 139 (170)
.. .+..---++++|.|..+
T Consensus 526 ~~-~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 526 HS-TPRLIDGILLTKFDTVD 544 (587)
T ss_pred CC-CccccceEEEEeccchh
Confidence 33 23444568889999755
Done!