Query 030848
Match_columns 170
No_of_seqs 109 out of 1666
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 100.0 6.9E-33 2.3E-37 192.7 18.3 162 1-170 1-162 (187)
2 1moz_A ARL1, ADP-ribosylation 100.0 1.2E-32 4.1E-37 190.5 15.5 163 1-170 1-164 (183)
3 1ksh_A ARF-like protein 2; sma 100.0 5.4E-32 1.9E-36 187.8 17.5 161 1-170 3-164 (186)
4 2x77_A ADP-ribosylation factor 100.0 2.5E-32 8.5E-37 190.1 13.9 163 1-170 3-168 (189)
5 2b6h_A ADP-ribosylation factor 100.0 2.3E-31 7.8E-36 186.1 16.2 161 3-170 15-175 (192)
6 1m2o_B GTP-binding protein SAR 100.0 1.2E-30 4.2E-35 182.0 18.1 163 1-170 6-176 (190)
7 4dkx_A RAS-related protein RAB 100.0 2.1E-31 7E-36 189.5 14.3 144 15-170 11-160 (216)
8 1zd9_A ADP-ribosylation factor 100.0 3.8E-30 1.3E-34 179.1 19.6 153 12-170 17-169 (188)
9 1fzq_A ADP-ribosylation factor 100.0 2E-30 7E-35 179.6 17.7 149 15-170 14-162 (181)
10 1r8s_A ADP-ribosylation factor 100.0 7.9E-30 2.7E-34 173.3 18.8 146 18-170 1-146 (164)
11 1f6b_A SAR1; gtpases, N-termin 100.0 2.8E-30 9.5E-35 181.4 16.0 151 13-170 21-183 (198)
12 1upt_A ARL1, ADP-ribosylation 100.0 2.1E-29 7.2E-34 172.1 18.9 149 15-170 5-153 (171)
13 2h57_A ADP-ribosylation factor 100.0 1.6E-29 5.3E-34 176.1 17.1 152 14-170 18-171 (190)
14 2h17_A ADP-ribosylation factor 100.0 1.2E-29 4E-34 175.6 16.0 149 15-170 19-167 (181)
15 4bas_A ADP-ribosylation factor 100.0 1E-29 3.6E-34 177.8 14.9 153 12-170 12-173 (199)
16 1u8z_A RAS-related protein RAL 100.0 3.7E-28 1.3E-32 165.1 14.8 145 15-170 2-151 (168)
17 1c1y_A RAS-related protein RAP 100.0 3.6E-28 1.2E-32 165.3 14.7 145 16-170 2-151 (167)
18 3o47_A ADP-ribosylation factor 100.0 4.9E-28 1.7E-32 182.1 15.7 150 14-170 162-311 (329)
19 3t5g_A GTP-binding protein RHE 100.0 4.2E-28 1.5E-32 167.4 14.0 146 14-170 3-153 (181)
20 1r2q_A RAS-related protein RAB 100.0 1.3E-27 4.4E-32 162.8 16.2 144 15-170 4-153 (170)
21 3kkq_A RAS-related protein M-R 100.0 5E-28 1.7E-32 167.3 14.2 146 14-170 15-166 (183)
22 3ihw_A Centg3; RAS, centaurin, 100.0 2.3E-27 8E-32 164.6 17.4 143 13-170 16-164 (184)
23 1kao_A RAP2A; GTP-binding prot 100.0 7.1E-28 2.4E-32 163.6 14.4 144 16-170 2-150 (167)
24 3oes_A GTPase rhebl1; small GT 100.0 3.5E-28 1.2E-32 170.8 13.3 149 11-170 18-171 (201)
25 2fg5_A RAB-22B, RAS-related pr 100.0 2.3E-27 7.9E-32 165.5 16.9 146 13-170 19-170 (192)
26 4dsu_A GTPase KRAS, isoform 2B 100.0 9.7E-28 3.3E-32 166.3 14.9 145 15-170 2-150 (189)
27 2bov_A RAla, RAS-related prote 100.0 2.3E-27 7.7E-32 166.7 16.6 149 11-170 8-161 (206)
28 3bc1_A RAS-related protein RAB 100.0 2.2E-27 7.6E-32 165.0 16.1 145 15-170 9-169 (195)
29 2efe_B Small GTP-binding prote 100.0 2.6E-27 9E-32 163.2 16.0 145 14-170 9-159 (181)
30 2fn4_A P23, RAS-related protei 100.0 2.8E-27 9.5E-32 162.8 16.0 146 14-170 6-156 (181)
31 2a9k_A RAS-related protein RAL 100.0 2E-27 6.7E-32 164.4 15.2 146 14-170 15-165 (187)
32 1z06_A RAS-related protein RAB 100.0 1.2E-27 4E-32 166.5 14.1 147 13-170 16-169 (189)
33 1ek0_A Protein (GTP-binding pr 100.0 2E-27 6.9E-32 161.9 14.9 143 16-170 2-153 (170)
34 2hup_A RAS-related protein RAB 100.0 2.4E-27 8.1E-32 166.7 15.7 144 15-170 27-177 (201)
35 3q72_A GTP-binding protein RAD 100.0 9.2E-28 3.1E-32 163.3 13.1 142 17-170 2-148 (166)
36 2atv_A RERG, RAS-like estrogen 100.0 1.1E-27 3.9E-32 167.5 13.8 149 10-170 21-174 (196)
37 1x3s_A RAS-related protein RAB 100.0 2.1E-27 7.3E-32 165.5 14.9 145 15-170 13-162 (195)
38 1z0f_A RAB14, member RAS oncog 100.0 3E-27 1E-31 162.4 15.2 145 14-170 12-162 (179)
39 3q3j_B RHO-related GTP-binding 100.0 1E-27 3.6E-32 170.2 13.1 144 14-170 24-186 (214)
40 2hxs_A RAB-26, RAS-related pro 100.0 1.1E-27 3.9E-32 164.6 12.8 146 14-170 3-157 (178)
41 3tkl_A RAS-related protein RAB 100.0 5.5E-27 1.9E-31 163.6 15.9 144 15-170 14-163 (196)
42 1z2a_A RAS-related protein RAB 100.0 1.5E-27 5.2E-32 162.3 12.6 143 15-170 3-151 (168)
43 3lvq_E ARF-GAP with SH3 domain 100.0 8.9E-27 3.1E-31 183.9 18.7 149 15-170 320-468 (497)
44 2bme_A RAB4A, RAS-related prot 100.0 5.8E-27 2E-31 162.2 15.6 144 15-170 8-157 (186)
45 3q85_A GTP-binding protein REM 100.0 1.8E-27 6.1E-32 162.3 12.7 145 17-170 2-151 (169)
46 1z0j_A RAB-22, RAS-related pro 100.0 5.6E-27 1.9E-31 159.8 15.1 144 15-170 4-153 (170)
47 3clv_A RAB5 protein, putative; 100.0 9.6E-27 3.3E-31 162.9 16.7 143 14-170 4-188 (208)
48 3t1o_A Gliding protein MGLA; G 100.0 1.3E-27 4.3E-32 166.8 12.1 151 13-170 10-176 (198)
49 2oil_A CATX-8, RAS-related pro 100.0 1E-26 3.4E-31 162.2 16.6 144 15-170 23-172 (193)
50 2p5s_A RAS and EF-hand domain 100.0 2.4E-27 8.1E-32 166.3 13.3 147 12-170 23-181 (199)
51 2nzj_A GTP-binding protein REM 99.9 5E-27 1.7E-31 160.8 14.4 146 15-170 2-153 (175)
52 2ew1_A RAS-related protein RAB 99.9 2.6E-27 9E-32 166.7 13.1 144 15-170 24-173 (201)
53 1zbd_A Rabphilin-3A; G protein 99.9 1.4E-26 4.9E-31 162.5 16.6 144 15-170 6-155 (203)
54 2y8e_A RAB-protein 6, GH09086P 99.9 8.9E-27 3.1E-31 160.0 15.1 144 15-170 12-161 (179)
55 1z08_A RAS-related protein RAB 99.9 1.5E-27 5.2E-32 162.7 11.2 144 15-170 4-153 (170)
56 2ce2_X GTPase HRAS; signaling 99.9 9.6E-27 3.3E-31 157.7 15.1 144 16-170 2-149 (166)
57 3reg_A RHO-like small GTPase; 99.9 2.7E-27 9.3E-32 165.2 12.6 144 14-170 20-172 (194)
58 2fu5_C RAS-related protein RAB 99.9 9.3E-28 3.2E-32 165.9 10.2 144 15-170 6-155 (183)
59 2f7s_A C25KG, RAS-related prot 99.9 2.6E-27 8.8E-32 168.1 12.6 145 15-170 23-183 (217)
60 3c5c_A RAS-like protein 12; GD 99.9 3E-27 1E-31 164.4 12.7 146 13-170 17-170 (187)
61 2a5j_A RAS-related protein RAB 99.9 3.6E-27 1.2E-31 164.3 12.9 144 15-170 19-168 (191)
62 3dz8_A RAS-related protein RAB 99.9 1.6E-27 5.4E-32 166.1 11.1 144 15-170 21-170 (191)
63 3cbq_A GTP-binding protein REM 99.9 5.5E-27 1.9E-31 164.2 13.8 148 14-170 20-172 (195)
64 1g16_A RAS-related protein SEC 99.9 3.2E-27 1.1E-31 161.0 12.3 143 16-170 2-149 (170)
65 3tw8_B RAS-related protein RAB 99.9 4.9E-27 1.7E-31 161.6 13.1 143 15-170 7-155 (181)
66 2g6b_A RAS-related protein RAB 99.9 5.9E-27 2E-31 161.3 13.4 145 14-170 7-158 (180)
67 2gf9_A RAS-related protein RAB 99.9 1.1E-26 3.9E-31 161.5 14.7 144 15-170 20-169 (189)
68 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.6E-26 5.5E-31 158.7 15.3 147 14-170 4-158 (177)
69 2erx_A GTP-binding protein DI- 99.9 9.8E-27 3.4E-31 158.8 13.8 144 16-170 2-151 (172)
70 2iwr_A Centaurin gamma 1; ANK 99.9 3.3E-26 1.1E-30 157.5 16.0 142 13-170 3-153 (178)
71 2bcg_Y Protein YP2, GTP-bindin 99.9 8E-27 2.7E-31 164.3 13.3 144 15-170 6-155 (206)
72 3con_A GTPase NRAS; structural 99.9 1.1E-26 3.8E-31 161.5 13.7 148 12-170 16-167 (190)
73 2il1_A RAB12; G-protein, GDP, 99.9 1.4E-26 4.7E-31 161.6 13.5 145 15-170 24-174 (192)
74 4djt_A GTP-binding nuclear pro 99.9 9.1E-27 3.1E-31 165.3 12.5 145 14-170 8-159 (218)
75 1m7b_A RND3/RHOE small GTP-bin 99.9 8.5E-27 2.9E-31 161.5 11.9 143 14-168 4-164 (184)
76 2gf0_A GTP-binding protein DI- 99.9 1.7E-26 5.8E-31 161.5 13.4 146 14-170 5-155 (199)
77 3cph_A RAS-related protein SEC 99.9 2.6E-26 8.9E-31 162.2 14.3 144 15-170 18-166 (213)
78 2o52_A RAS-related protein RAB 99.9 8.2E-27 2.8E-31 163.8 11.6 144 15-170 23-172 (200)
79 2yc2_C IFT27, small RAB-relate 99.9 2.8E-27 9.6E-32 166.4 9.0 147 15-170 18-176 (208)
80 2atx_A Small GTP binding prote 99.9 2.3E-26 7.7E-31 160.5 13.2 143 15-170 16-177 (194)
81 1ky3_A GTP-binding protein YPT 99.9 1.8E-26 6.1E-31 158.9 12.5 147 14-170 5-162 (182)
82 3cpj_B GTP-binding protein YPT 99.9 2.3E-26 8E-31 164.0 13.1 144 15-170 11-160 (223)
83 2fh5_B SR-beta, signal recogni 99.9 1E-25 3.5E-30 159.5 15.9 129 14-149 4-139 (214)
84 4gzl_A RAS-related C3 botulinu 99.9 1.5E-26 5E-31 163.0 11.5 148 11-170 24-189 (204)
85 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.7E-26 5.9E-31 159.6 11.2 143 15-170 3-164 (186)
86 3gj0_A GTP-binding nuclear pro 99.9 4.2E-27 1.4E-31 167.6 8.3 144 14-170 12-159 (221)
87 2j0v_A RAC-like GTP-binding pr 99.9 9.8E-27 3.3E-31 164.5 10.0 145 13-170 5-164 (212)
88 2g3y_A GTP-binding protein GEM 99.9 5.7E-26 2E-30 160.9 13.7 146 15-170 35-187 (211)
89 2fv8_A H6, RHO-related GTP-bin 99.9 3.5E-26 1.2E-30 161.3 12.4 145 13-170 21-184 (207)
90 3bwd_D RAC-like GTP-binding pr 99.9 5.2E-27 1.8E-31 161.8 8.0 145 13-170 4-165 (182)
91 2gco_A H9, RHO-related GTP-bin 99.9 5E-26 1.7E-30 159.9 13.1 144 14-170 22-184 (201)
92 1gwn_A RHO-related GTP-binding 99.9 2.8E-26 9.6E-31 161.8 11.7 143 14-168 25-185 (205)
93 2j1l_A RHO-related GTP-binding 99.9 3E-26 1E-30 162.6 11.8 143 15-170 32-193 (214)
94 1vg8_A RAS-related protein RAB 99.9 4.8E-26 1.6E-30 160.1 12.7 147 14-170 5-159 (207)
95 2q3h_A RAS homolog gene family 99.9 3E-26 1E-30 160.7 11.4 144 14-170 17-179 (201)
96 2cjw_A GTP-binding protein GEM 99.9 2.3E-25 7.9E-30 155.6 13.1 146 15-170 4-156 (192)
97 2zej_A Dardarin, leucine-rich 99.9 5.9E-26 2E-30 157.4 8.4 147 17-170 2-161 (184)
98 3l0i_B RAS-related protein RAB 99.9 5E-27 1.7E-31 164.6 2.1 144 15-170 31-180 (199)
99 3llu_A RAS-related GTP-binding 99.9 9.6E-25 3.3E-29 152.7 12.4 152 13-169 16-181 (196)
100 3th5_A RAS-related C3 botulinu 99.9 8.2E-27 2.8E-31 164.1 0.0 145 13-170 26-189 (204)
101 3r7w_A Gtpase1, GTP-binding pr 99.9 3E-24 1E-28 160.1 13.6 149 16-169 2-165 (307)
102 2lkc_A Translation initiation 99.9 8.2E-24 2.8E-28 145.2 13.2 145 14-170 5-155 (178)
103 3r7w_B Gtpase2, GTP-binding pr 99.9 4E-24 1.4E-28 159.2 12.3 145 19-169 1-158 (331)
104 1nrj_B SR-beta, signal recogni 99.9 6.7E-25 2.3E-29 155.7 6.9 149 14-170 9-168 (218)
105 1svi_A GTP-binding protein YSX 99.9 1.7E-23 5.7E-28 145.9 12.8 147 14-170 20-179 (195)
106 2wji_A Ferrous iron transport 99.9 2.6E-23 8.7E-28 141.7 12.7 137 16-170 2-149 (165)
107 2gj8_A MNME, tRNA modification 99.9 3.1E-23 1E-27 142.4 13.0 141 15-170 2-150 (172)
108 2wkq_A NPH1-1, RAS-related C3 99.9 2.4E-23 8.3E-28 156.0 13.2 143 15-170 153-314 (332)
109 2dyk_A GTP-binding protein; GT 99.9 2.9E-23 9.9E-28 140.2 11.7 138 18-170 2-146 (161)
110 2f9l_A RAB11B, member RAS onco 99.9 6.1E-23 2.1E-27 143.8 13.6 143 16-170 4-152 (199)
111 2qu8_A Putative nucleolar GTP- 99.9 8.5E-23 2.9E-27 146.0 14.0 147 15-170 27-189 (228)
112 3pqc_A Probable GTP-binding pr 99.9 1.7E-22 6E-27 140.4 12.3 147 13-170 19-178 (195)
113 1oix_A RAS-related protein RAB 99.9 2.9E-22 9.9E-27 139.7 13.4 143 16-170 28-176 (191)
114 4dhe_A Probable GTP-binding pr 99.9 7.2E-23 2.5E-27 145.6 10.4 150 14-170 26-195 (223)
115 2cxx_A Probable GTP-binding pr 99.9 1.1E-23 3.8E-28 146.0 5.9 144 18-170 2-168 (190)
116 2wjg_A FEOB, ferrous iron tran 99.9 3E-22 1E-26 138.7 10.8 138 15-170 5-153 (188)
117 3iev_A GTP-binding protein ERA 99.9 2.2E-21 7.4E-26 144.7 15.9 148 14-170 7-166 (308)
118 2ged_A SR-beta, signal recogni 99.9 1.4E-22 4.7E-27 141.0 8.6 129 15-151 46-182 (193)
119 3dpu_A RAB family protein; roc 99.9 2.8E-22 9.5E-27 159.5 10.9 141 14-170 38-192 (535)
120 1wf3_A GTP-binding protein; GT 99.9 3.6E-21 1.2E-25 143.0 15.8 143 16-170 6-157 (301)
121 3c5h_A Glucocorticoid receptor 99.9 2.5E-23 8.4E-28 151.4 3.9 150 14-170 16-239 (255)
122 3p26_A Elongation factor 1 alp 99.9 2.1E-22 7.1E-27 158.4 9.1 154 14-170 30-222 (483)
123 1zun_B Sulfate adenylate trans 99.9 9E-21 3.1E-25 147.4 17.7 157 10-170 17-208 (434)
124 3a1s_A Iron(II) transport prot 99.9 1.4E-21 4.6E-26 142.4 11.5 137 15-170 3-151 (258)
125 3sjy_A Translation initiation 99.9 3E-21 1E-25 148.8 13.7 155 13-170 4-176 (403)
126 3j2k_7 ERF3, eukaryotic polype 99.9 3.5E-21 1.2E-25 149.7 14.0 154 13-170 13-209 (439)
127 3i8s_A Ferrous iron transport 99.9 3.1E-22 1.1E-26 147.0 7.5 136 16-170 2-153 (274)
128 3iby_A Ferrous iron transport 99.9 1.4E-22 4.9E-27 147.4 5.5 134 18-170 2-151 (256)
129 2hjg_A GTP-binding protein ENG 99.9 1.3E-21 4.4E-26 152.2 11.1 147 16-170 174-333 (436)
130 1jny_A EF-1-alpha, elongation 99.9 2.5E-21 8.7E-26 150.5 12.2 153 14-170 3-197 (435)
131 1cip_A Protein (guanine nucleo 99.9 6E-21 2.1E-25 144.3 13.9 117 54-170 179-328 (353)
132 3b1v_A Ferrous iron uptake tra 99.9 1.9E-21 6.4E-26 142.6 10.0 134 17-170 3-148 (272)
133 3ohm_A Guanine nucleotide-bind 99.9 1.2E-20 4.1E-25 141.0 14.0 119 52-170 151-302 (327)
134 3gee_A MNME, tRNA modification 99.8 3.7E-21 1.3E-25 150.6 10.5 144 15-170 231-382 (476)
135 1lnz_A SPO0B-associated GTP-bi 99.8 1.6E-21 5.5E-26 147.0 8.0 143 18-170 159-314 (342)
136 4dcu_A GTP-binding protein ENG 99.8 8.8E-21 3E-25 148.3 12.4 148 15-170 193-353 (456)
137 3k53_A Ferrous iron transport 99.8 4.5E-21 1.5E-25 140.5 9.8 137 16-170 2-150 (271)
138 1xzp_A Probable tRNA modificat 99.8 1.7E-20 5.7E-25 147.1 13.5 139 16-170 242-389 (482)
139 4fid_A G protein alpha subunit 99.8 1.7E-20 5.7E-25 140.7 13.0 88 52-139 145-242 (340)
140 2c78_A Elongation factor TU-A; 99.8 1.6E-20 5.4E-25 144.8 12.9 153 13-170 7-178 (405)
141 2e87_A Hypothetical protein PH 99.8 1.7E-20 6E-25 142.4 12.8 145 15-170 165-320 (357)
142 3izq_1 HBS1P, elongation facto 99.8 3.6E-21 1.2E-25 154.8 9.0 154 14-170 164-356 (611)
143 1s0u_A EIF-2-gamma, translatio 99.8 2.1E-20 7.2E-25 144.2 12.9 150 13-170 4-182 (408)
144 1d2e_A Elongation factor TU (E 99.8 1.1E-20 3.6E-25 145.4 11.1 151 15-170 1-169 (397)
145 1f60_A Elongation factor EEF1A 99.8 1.3E-20 4.5E-25 147.2 10.8 153 14-170 4-196 (458)
146 1kk1_A EIF2gamma; initiation o 99.8 3.2E-20 1.1E-24 143.4 12.6 150 13-170 6-184 (410)
147 1r5b_A Eukaryotic peptide chai 99.8 2.8E-21 9.5E-26 151.4 6.3 155 12-170 38-236 (467)
148 1zcb_A G alpha I/13; GTP-bindi 99.8 9.5E-20 3.2E-24 138.2 14.3 117 54-170 187-337 (362)
149 3qq5_A Small GTP-binding prote 99.8 8.8E-21 3E-25 146.4 8.3 142 14-170 31-180 (423)
150 3lxx_A GTPase IMAP family memb 99.8 5E-20 1.7E-24 132.6 10.8 125 13-141 25-161 (239)
151 1mky_A Probable GTP-binding pr 99.8 5.9E-20 2E-24 143.0 11.7 139 18-170 2-150 (439)
152 3lxw_A GTPase IMAP family memb 99.8 3.6E-19 1.2E-23 128.8 14.0 129 9-140 13-154 (247)
153 3geh_A MNME, tRNA modification 99.8 3.7E-20 1.3E-24 144.5 9.0 139 15-170 222-368 (462)
154 3mca_A HBS1, elongation factor 99.8 8.4E-22 2.9E-26 158.0 -0.8 155 12-170 172-367 (592)
155 1wb1_A Translation elongation 99.8 8.7E-20 3E-24 143.4 10.5 149 15-170 17-173 (482)
156 2hjg_A GTP-binding protein ENG 99.8 5.2E-20 1.8E-24 143.2 8.4 138 18-170 4-149 (436)
157 2elf_A Protein translation elo 99.8 2.6E-19 8.8E-24 136.4 11.5 130 19-169 23-160 (370)
158 3tr5_A RF-3, peptide chain rel 99.8 1.9E-19 6.4E-24 142.6 11.1 121 16-141 12-150 (528)
159 2ywe_A GTP-binding protein LEP 99.8 1.1E-18 3.6E-23 139.7 15.5 148 15-170 4-168 (600)
160 3t5d_A Septin-7; GTP-binding p 99.8 2.2E-19 7.7E-24 131.7 10.7 150 15-170 6-188 (274)
161 2xtp_A GTPase IMAP family memb 99.8 8.9E-19 3E-23 127.5 13.7 123 14-140 19-154 (260)
162 1g7s_A Translation initiation 99.8 1.2E-19 4.1E-24 145.3 9.8 114 16-139 4-136 (594)
163 1mky_A Probable GTP-binding pr 99.8 4.2E-19 1.4E-23 138.2 12.3 147 16-170 179-339 (439)
164 3cb4_D GTP-binding protein LEP 99.8 7.5E-19 2.5E-23 140.7 14.0 147 16-170 3-166 (599)
165 1azs_C GS-alpha; complex (lyas 99.8 5.2E-19 1.8E-23 135.4 12.3 85 55-139 204-298 (402)
166 3def_A T7I23.11 protein; chlor 99.8 2E-18 7E-23 125.8 14.5 122 15-139 34-165 (262)
167 3izy_P Translation initiation 99.8 1.5E-20 5.2E-25 148.6 3.4 146 16-170 3-152 (537)
168 2xtz_A Guanine nucleotide-bind 99.8 4.8E-19 1.6E-23 133.9 11.3 74 66-139 181-264 (354)
169 1ega_A Protein (GTP-binding pr 99.8 5.8E-19 2E-23 131.2 11.1 143 16-170 7-159 (301)
170 2qtf_A Protein HFLX, GTP-bindi 99.8 1.3E-18 4.5E-23 132.2 12.7 145 17-170 178-338 (364)
171 3avx_A Elongation factor TS, e 99.8 6.3E-19 2.2E-23 148.0 11.8 153 13-170 292-462 (1289)
172 2aka_B Dynamin-1; fusion prote 99.8 3.9E-18 1.3E-22 126.2 14.6 98 67-170 124-237 (299)
173 1zo1_I IF2, translation initia 99.8 7.5E-20 2.6E-24 143.6 4.8 145 16-170 3-151 (501)
174 4dcu_A GTP-binding protein ENG 99.8 2.6E-19 9E-24 139.9 7.4 142 14-170 20-169 (456)
175 2h5e_A Peptide chain release f 99.8 2.4E-18 8.2E-23 136.4 12.8 132 15-151 11-163 (529)
176 1h65_A Chloroplast outer envel 99.8 2.6E-17 8.8E-22 120.5 14.5 123 15-140 37-169 (270)
177 2qag_A Septin-2, protein NEDD5 99.8 6.2E-19 2.1E-23 134.0 5.7 146 15-170 35-218 (361)
178 1dar_A EF-G, elongation factor 99.7 7.9E-17 2.7E-21 131.4 16.8 122 15-141 10-145 (691)
179 1jwy_B Dynamin A GTPase domain 99.7 2.4E-17 8.2E-22 122.9 11.5 72 66-141 129-214 (315)
180 2xex_A Elongation factor G; GT 99.7 1.2E-16 4.1E-21 130.4 15.3 122 15-141 8-143 (693)
181 3t34_A Dynamin-related protein 99.7 9.1E-17 3.1E-21 122.1 12.7 95 67-169 135-244 (360)
182 1wxq_A GTP-binding protein; st 99.7 6.3E-18 2.1E-22 129.8 5.8 87 18-104 1-114 (397)
183 1n0u_A EF-2, elongation factor 99.7 5.5E-17 1.9E-21 134.8 11.5 121 14-139 16-164 (842)
184 2dy1_A Elongation factor G; tr 99.7 1.1E-15 3.7E-20 124.3 17.5 119 15-138 7-139 (665)
185 1udx_A The GTP-binding protein 99.7 7.4E-17 2.5E-21 124.3 9.6 143 18-170 158-309 (416)
186 1pui_A ENGB, probable GTP-bind 99.7 1.1E-16 3.8E-21 112.5 9.8 143 13-170 22-183 (210)
187 2qpt_A EH domain-containing pr 99.7 2E-16 6.8E-21 126.0 11.2 126 16-148 64-241 (550)
188 2j69_A Bacterial dynamin-like 99.7 2.6E-16 8.9E-21 128.4 11.7 69 68-140 174-245 (695)
189 2x2e_A Dynamin-1; nitration, h 99.7 4.5E-16 1.5E-20 118.0 10.8 99 67-170 129-242 (353)
190 2rdo_7 EF-G, elongation factor 99.7 2.6E-15 8.8E-20 122.7 15.8 121 15-140 8-149 (704)
191 1jal_A YCHF protein; nucleotid 99.6 7.9E-15 2.7E-19 110.9 15.0 82 18-103 3-108 (363)
192 2dby_A GTP-binding protein; GD 99.6 2E-14 6.8E-19 109.2 12.3 84 18-103 2-111 (368)
193 3p32_A Probable GTPase RV1496/ 99.6 2E-15 7E-20 114.5 6.9 93 66-170 170-268 (355)
194 3vqt_A RF-3, peptide chain rel 99.6 4.2E-14 1.4E-18 112.6 13.8 131 16-151 30-181 (548)
195 4a9a_A Ribosome-interacting GT 99.6 1.3E-14 4.5E-19 110.3 9.6 117 16-138 71-195 (376)
196 2qnr_A Septin-2, protein NEDD5 99.6 3.3E-15 1.1E-19 110.9 5.9 145 15-170 16-199 (301)
197 2qag_C Septin-7; cell cycle, c 99.5 9.6E-15 3.3E-19 112.6 5.5 146 15-170 29-211 (418)
198 2www_A Methylmalonic aciduria 99.5 1.4E-14 4.9E-19 109.5 5.8 93 66-170 165-263 (349)
199 1u0l_A Probable GTPase ENGC; p 99.5 1.6E-14 5.4E-19 107.2 5.8 111 50-170 45-157 (301)
200 3zvr_A Dynamin-1; hydrolase, D 99.5 4.8E-13 1.6E-17 109.4 14.2 98 68-170 150-262 (772)
201 2wsm_A Hydrogenase expression/ 99.5 4.5E-14 1.5E-18 100.0 6.7 144 12-170 25-198 (221)
202 3j25_A Tetracycline resistance 99.5 1.4E-13 4.8E-18 111.5 8.6 120 18-142 3-136 (638)
203 1yrb_A ATP(GTP)binding protein 99.5 1.3E-13 4.4E-18 100.0 7.0 73 68-141 109-187 (262)
204 2p67_A LAO/AO transport system 99.4 1E-13 3.6E-18 104.5 6.0 93 66-170 147-245 (341)
205 4fn5_A EF-G 1, elongation fact 99.4 2.7E-12 9.2E-17 105.2 14.6 130 17-151 13-166 (709)
206 3l82_B F-box only protein 4; T 99.4 1.2E-12 4E-17 91.3 9.0 93 76-170 110-207 (227)
207 2ohf_A Protein OLA1, GTP-bindi 99.3 6.8E-12 2.3E-16 95.8 7.0 87 15-105 20-130 (396)
208 2qm8_A GTPase/ATPase; G protei 99.3 1.9E-11 6.4E-16 92.0 8.6 144 15-170 53-245 (337)
209 3l2o_B F-box only protein 4; s 99.2 1.6E-11 5.4E-16 89.5 7.0 94 75-170 194-292 (312)
210 2hf9_A Probable hydrogenase ni 99.2 1.1E-12 3.9E-17 93.0 -1.3 43 125-170 164-208 (226)
211 3ec1_A YQEH GTPase; atnos1, at 99.2 7.8E-12 2.7E-16 95.2 2.2 129 17-151 162-300 (369)
212 2qag_B Septin-6, protein NEDD5 99.2 2.1E-10 7.1E-15 88.4 10.0 141 17-166 42-216 (427)
213 3h2y_A GTPase family protein; 99.1 4.4E-11 1.5E-15 91.0 3.7 129 17-151 160-299 (368)
214 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.1E-09 3.6E-14 83.8 10.3 84 16-103 19-127 (392)
215 3sop_A Neuronal-specific septi 99.0 1.2E-09 4.1E-14 79.8 9.5 120 17-142 2-157 (270)
216 2yv5_A YJEQ protein; hydrolase 99.0 3.4E-10 1.2E-14 84.0 4.3 84 78-170 66-153 (302)
217 2j37_W Signal recognition part 98.8 8.9E-08 3.1E-12 75.4 12.0 118 16-141 100-256 (504)
218 1tq4_A IIGP1, interferon-induc 98.7 1.9E-07 6.4E-12 71.9 10.3 144 16-167 68-232 (413)
219 1puj_A YLQF, conserved hypothe 98.6 7.9E-08 2.7E-12 70.5 5.6 58 15-78 118-175 (282)
220 1puj_A YLQF, conserved hypothe 98.6 6.8E-08 2.3E-12 70.9 5.0 87 72-170 3-90 (282)
221 3szr_A Interferon-induced GTP- 98.5 1.9E-07 6.4E-12 75.4 6.8 24 18-41 46-69 (608)
222 1f5n_A Interferon-induced guan 98.5 3.9E-07 1.3E-11 73.1 7.8 64 14-78 35-101 (592)
223 3h2y_A GTPase family protein; 98.4 7.4E-08 2.5E-12 73.2 2.7 85 77-170 55-144 (368)
224 3cnl_A YLQF, putative uncharac 98.4 1.1E-07 3.9E-12 68.9 3.5 56 18-79 100-155 (262)
225 3dm5_A SRP54, signal recogniti 98.4 2.3E-06 8E-11 66.3 10.2 116 17-139 100-253 (443)
226 3ec1_A YQEH GTPase; atnos1, at 98.4 1.3E-07 4.4E-12 72.0 3.2 85 77-170 57-146 (369)
227 2v3c_C SRP54, signal recogniti 98.4 4.2E-07 1.4E-11 70.4 5.6 66 66-139 179-252 (432)
228 3kl4_A SRP54, signal recogniti 98.2 6E-06 2.1E-10 63.9 7.9 116 17-139 97-252 (433)
229 1j8m_F SRP54, signal recogniti 98.1 1.5E-05 5E-10 58.9 8.2 66 66-139 179-253 (297)
230 3cnl_A YLQF, putative uncharac 98.0 2.5E-06 8.6E-11 61.9 2.8 81 75-170 4-85 (262)
231 3q5d_A Atlastin-1; G protein, 97.9 6.3E-05 2.1E-09 58.5 9.6 27 14-40 64-90 (447)
232 1t9h_A YLOQ, probable GTPase E 97.9 7.5E-06 2.6E-10 60.6 3.8 74 88-169 83-160 (307)
233 2xxa_A Signal recognition part 97.9 9.5E-05 3.2E-09 57.3 9.5 67 66-140 182-255 (433)
234 1rj9_A FTSY, signal recognitio 97.8 7.1E-05 2.4E-09 55.4 8.1 26 17-42 102-127 (304)
235 3e70_C DPA, signal recognition 97.8 9.3E-05 3.2E-09 55.3 8.8 116 16-138 128-281 (328)
236 2yhs_A FTSY, cell division pro 97.8 6.6E-05 2.3E-09 58.9 8.1 24 17-40 293-316 (503)
237 1bif_A 6-phosphofructo-2-kinas 97.8 8E-06 2.7E-10 64.0 2.3 95 15-117 37-145 (469)
238 3end_A Light-independent proto 97.7 0.00043 1.5E-08 50.9 10.2 69 67-137 156-225 (307)
239 4dzz_A Plasmid partitioning pr 97.7 0.0009 3.1E-08 46.0 11.2 69 67-139 75-144 (206)
240 1ye8_A Protein THEP1, hypothet 97.6 3.5E-05 1.2E-09 52.6 3.3 24 18-41 1-24 (178)
241 1kgd_A CASK, peripheral plasma 97.5 5.3E-05 1.8E-09 51.5 3.1 23 19-41 7-29 (180)
242 1zu4_A FTSY; GTPase, signal re 97.5 0.0025 8.5E-08 47.4 12.0 24 17-40 105-128 (320)
243 2ffh_A Protein (FFH); SRP54, s 97.5 0.00023 7.9E-09 55.0 6.5 115 18-139 99-251 (425)
244 2bbw_A Adenylate kinase 4, AK4 97.5 6.9E-05 2.3E-09 53.5 3.3 23 16-38 26-48 (246)
245 1lvg_A Guanylate kinase, GMP k 97.5 6.7E-05 2.3E-09 51.9 3.1 24 18-41 5-28 (198)
246 3asz_A Uridine kinase; cytidin 97.5 8.5E-05 2.9E-09 51.6 3.6 26 15-40 4-29 (211)
247 2rcn_A Probable GTPase ENGC; Y 97.4 9.1E-05 3.1E-09 56.0 3.6 24 18-41 216-239 (358)
248 3tr0_A Guanylate kinase, GMP k 97.4 8.8E-05 3E-09 51.2 3.1 24 18-41 8-31 (205)
249 3c8u_A Fructokinase; YP_612366 97.4 0.00012 4E-09 51.0 3.5 27 15-41 20-46 (208)
250 3a00_A Guanylate kinase, GMP k 97.4 9.9E-05 3.4E-09 50.4 3.1 23 20-42 4-26 (186)
251 1zp6_A Hypothetical protein AT 97.4 9.6E-05 3.3E-09 50.4 3.0 23 18-40 10-32 (191)
252 2yv5_A YJEQ protein; hydrolase 97.4 0.00032 1.1E-08 51.7 5.9 25 18-43 166-190 (302)
253 1znw_A Guanylate kinase, GMP k 97.4 0.00011 3.6E-09 51.2 3.1 23 19-41 22-44 (207)
254 2rcn_A Probable GTPase ENGC; Y 97.4 0.00025 8.4E-09 53.6 5.2 73 89-170 128-203 (358)
255 1t9h_A YLOQ, probable GTPase E 97.4 4.9E-05 1.7E-09 56.3 1.3 23 18-40 174-196 (307)
256 1s96_A Guanylate kinase, GMP k 97.3 0.00012 4.1E-09 51.6 3.1 25 18-42 17-41 (219)
257 1z6g_A Guanylate kinase; struc 97.3 0.00013 4.3E-09 51.3 3.1 24 18-41 24-47 (218)
258 3tif_A Uncharacterized ABC tra 97.3 0.0001 3.4E-09 52.5 2.5 22 19-40 33-54 (235)
259 4gp7_A Metallophosphoesterase; 97.3 0.00014 4.9E-09 49.0 2.8 19 18-36 10-28 (171)
260 1mv5_A LMRA, multidrug resista 97.3 0.00019 6.5E-09 51.3 3.6 24 19-42 30-53 (243)
261 3ney_A 55 kDa erythrocyte memb 97.3 0.00016 5.6E-09 50.0 3.1 27 16-42 18-44 (197)
262 1kag_A SKI, shikimate kinase I 97.3 0.00017 5.7E-09 48.4 3.1 22 18-39 5-26 (173)
263 4eun_A Thermoresistant glucoki 97.3 0.00019 6.6E-09 49.5 3.4 24 16-39 28-51 (200)
264 1ex7_A Guanylate kinase; subst 97.3 0.0002 6.7E-09 49.2 3.3 23 20-42 4-26 (186)
265 1aky_A Adenylate kinase; ATP:A 97.2 0.0002 6.9E-09 50.1 3.4 25 15-39 2-26 (220)
266 3tau_A Guanylate kinase, GMP k 97.2 0.00018 6.1E-09 50.1 3.1 25 17-41 8-32 (208)
267 3fb4_A Adenylate kinase; psych 97.2 0.0002 6.8E-09 49.9 3.4 22 18-39 1-22 (216)
268 4g1u_C Hemin import ATP-bindin 97.2 0.00018 6.3E-09 52.1 3.2 24 19-42 39-62 (266)
269 2j41_A Guanylate kinase; GMP, 97.2 0.00022 7.6E-09 49.1 3.5 25 17-41 6-30 (207)
270 2pcj_A ABC transporter, lipopr 97.2 0.00013 4.5E-09 51.5 2.4 22 19-40 32-53 (224)
271 3dl0_A Adenylate kinase; phosp 97.2 0.00021 7.3E-09 49.8 3.4 22 18-39 1-22 (216)
272 1htw_A HI0065; nucleotide-bind 97.2 0.00029 9.8E-09 47.1 3.8 26 16-41 32-57 (158)
273 3lw7_A Adenylate kinase relate 97.2 0.0002 7E-09 47.7 3.1 20 18-37 2-21 (179)
274 2qor_A Guanylate kinase; phosp 97.2 0.0002 6.8E-09 49.6 3.1 24 18-41 13-36 (204)
275 3kb2_A SPBC2 prophage-derived 97.2 0.00023 8E-09 47.5 3.3 21 19-39 3-23 (173)
276 1knq_A Gluconate kinase; ALFA/ 97.2 0.00029 9.9E-09 47.4 3.7 24 16-39 7-30 (175)
277 2onk_A Molybdate/tungstate ABC 97.2 0.00017 5.8E-09 51.5 2.7 23 18-40 25-47 (240)
278 2if2_A Dephospho-COA kinase; a 97.2 0.00025 8.6E-09 48.9 3.3 22 18-39 2-23 (204)
279 3gfo_A Cobalt import ATP-bindi 97.2 0.00017 5.7E-09 52.6 2.4 23 19-41 36-58 (275)
280 2bdt_A BH3686; alpha-beta prot 97.2 0.00024 8.2E-09 48.4 3.1 21 19-39 4-24 (189)
281 3t61_A Gluconokinase; PSI-biol 97.2 0.00024 8.1E-09 49.0 3.1 23 17-39 18-40 (202)
282 1ly1_A Polynucleotide kinase; 97.2 0.0003 1E-08 47.3 3.5 22 18-39 3-24 (181)
283 1b0u_A Histidine permease; ABC 97.2 0.00018 6.1E-09 52.1 2.4 22 19-40 34-55 (262)
284 1cke_A CK, MSSA, protein (cyti 97.2 0.00028 9.7E-09 49.4 3.4 22 18-39 6-27 (227)
285 2ff7_A Alpha-hemolysin translo 97.2 0.0002 6.9E-09 51.3 2.7 23 19-41 37-59 (247)
286 1sgw_A Putative ABC transporte 97.2 0.00018 6.3E-09 50.4 2.4 22 19-40 37-58 (214)
287 1g6h_A High-affinity branched- 97.2 0.00018 6.3E-09 51.8 2.5 22 19-40 35-56 (257)
288 3cm0_A Adenylate kinase; ATP-b 97.1 0.00035 1.2E-08 47.4 3.7 23 17-39 4-26 (186)
289 2pze_A Cystic fibrosis transme 97.1 0.00021 7.3E-09 50.6 2.7 22 19-40 36-57 (229)
290 2cbz_A Multidrug resistance-as 97.1 0.00026 9E-09 50.4 3.1 23 19-41 33-55 (237)
291 2eyu_A Twitching motility prot 97.1 0.00028 9.4E-09 51.0 3.2 26 16-41 24-49 (261)
292 1y63_A LMAJ004144AAA protein; 97.1 0.00037 1.3E-08 47.4 3.6 24 16-39 9-32 (184)
293 1ji0_A ABC transporter; ATP bi 97.1 0.00021 7.3E-09 50.9 2.5 22 19-40 34-55 (240)
294 1kht_A Adenylate kinase; phosp 97.1 0.00033 1.1E-08 47.6 3.3 23 17-39 3-25 (192)
295 3cwq_A Para family chromosome 97.1 0.012 4E-07 40.8 11.3 67 67-139 67-134 (209)
296 2jaq_A Deoxyguanosine kinase; 97.1 0.00033 1.1E-08 48.1 3.3 21 19-39 2-22 (205)
297 1jjv_A Dephospho-COA kinase; P 97.1 0.00036 1.2E-08 48.2 3.4 22 18-39 3-24 (206)
298 1vpl_A ABC transporter, ATP-bi 97.1 0.00023 7.7E-09 51.4 2.4 22 19-40 43-64 (256)
299 3b85_A Phosphate starvation-in 97.1 0.00029 1E-08 49.2 2.9 23 18-40 23-45 (208)
300 2olj_A Amino acid ABC transpor 97.1 0.00023 7.8E-09 51.6 2.4 22 19-40 52-73 (263)
301 2i3b_A HCR-ntpase, human cance 97.1 0.00029 1E-08 48.4 2.9 24 19-42 3-26 (189)
302 3sr0_A Adenylate kinase; phosp 97.1 0.00036 1.2E-08 48.7 3.4 22 18-39 1-22 (206)
303 2ixe_A Antigen peptide transpo 97.1 0.00026 8.8E-09 51.5 2.7 23 19-41 47-69 (271)
304 3uie_A Adenylyl-sulfate kinase 97.1 0.00044 1.5E-08 47.7 3.8 26 15-40 23-48 (200)
305 3ec2_A DNA replication protein 97.1 0.00045 1.5E-08 46.7 3.8 26 16-41 37-62 (180)
306 1jbk_A CLPB protein; beta barr 97.1 0.00066 2.3E-08 45.7 4.6 34 7-40 33-66 (195)
307 2cdn_A Adenylate kinase; phosp 97.1 0.00043 1.5E-08 47.7 3.7 25 15-39 18-42 (201)
308 2v9p_A Replication protein E1; 97.1 0.00034 1.2E-08 51.7 3.3 26 16-41 125-150 (305)
309 3tlx_A Adenylate kinase 2; str 97.1 0.00042 1.4E-08 49.4 3.7 25 15-39 27-51 (243)
310 1qhx_A CPT, protein (chloramph 97.1 0.00035 1.2E-08 47.0 3.1 22 18-39 4-25 (178)
311 2yvu_A Probable adenylyl-sulfa 97.1 0.00047 1.6E-08 46.9 3.8 25 15-39 11-35 (186)
312 1e4v_A Adenylate kinase; trans 97.1 0.00037 1.3E-08 48.5 3.3 22 18-39 1-22 (214)
313 2rhm_A Putative kinase; P-loop 97.1 0.00046 1.6E-08 47.0 3.7 23 17-39 5-27 (193)
314 2ihy_A ABC transporter, ATP-bi 97.1 0.00028 9.6E-09 51.5 2.7 23 19-41 49-71 (279)
315 2qi9_C Vitamin B12 import ATP- 97.1 0.00036 1.2E-08 50.1 3.2 23 19-41 28-50 (249)
316 2ghi_A Transport protein; mult 97.1 0.00034 1.2E-08 50.5 3.1 23 19-41 48-70 (260)
317 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00034 1.2E-08 50.2 3.1 22 19-40 31-52 (250)
318 1nks_A Adenylate kinase; therm 97.1 0.00042 1.4E-08 47.1 3.4 22 18-39 2-23 (194)
319 3aez_A Pantothenate kinase; tr 97.0 0.00071 2.4E-08 50.2 4.8 27 15-41 88-114 (312)
320 3vaa_A Shikimate kinase, SK; s 97.0 0.00043 1.5E-08 47.7 3.4 23 17-39 25-47 (199)
321 2jeo_A Uridine-cytidine kinase 97.0 0.00046 1.6E-08 49.2 3.6 25 16-40 24-48 (245)
322 1nn5_A Similar to deoxythymidy 97.0 0.00045 1.5E-08 47.9 3.5 24 16-39 8-31 (215)
323 2qt1_A Nicotinamide riboside k 97.0 0.00048 1.6E-08 47.7 3.6 25 16-40 20-44 (207)
324 1tev_A UMP-CMP kinase; ploop, 97.0 0.00046 1.6E-08 46.9 3.5 23 17-39 3-25 (196)
325 2nq2_C Hypothetical ABC transp 97.0 0.0003 1E-08 50.6 2.6 23 19-41 33-55 (253)
326 2yz2_A Putative ABC transporte 97.0 0.00031 1.1E-08 50.9 2.7 22 19-40 35-56 (266)
327 2zu0_C Probable ATP-dependent 97.0 0.00041 1.4E-08 50.3 3.3 22 19-40 48-69 (267)
328 3lnc_A Guanylate kinase, GMP k 97.0 0.00025 8.6E-09 50.0 2.1 23 18-40 28-51 (231)
329 2pt5_A Shikimate kinase, SK; a 97.0 0.00047 1.6E-08 45.9 3.3 22 18-39 1-22 (168)
330 1u0l_A Probable GTPase ENGC; p 97.0 0.00038 1.3E-08 51.3 3.0 24 18-41 170-193 (301)
331 1sq5_A Pantothenate kinase; P- 97.0 0.0007 2.4E-08 50.0 4.5 26 15-40 78-103 (308)
332 3tqc_A Pantothenate kinase; bi 97.0 0.00073 2.5E-08 50.3 4.5 27 14-40 89-115 (321)
333 2plr_A DTMP kinase, probable t 97.0 0.00056 1.9E-08 47.2 3.7 23 17-39 4-26 (213)
334 3be4_A Adenylate kinase; malar 97.0 0.00048 1.6E-08 48.2 3.3 24 16-39 4-27 (217)
335 3trf_A Shikimate kinase, SK; a 97.0 0.0005 1.7E-08 46.6 3.3 23 17-39 5-27 (185)
336 2v54_A DTMP kinase, thymidylat 97.0 0.00057 1.9E-08 47.0 3.5 23 17-39 4-26 (204)
337 2c95_A Adenylate kinase 1; tra 97.0 0.00053 1.8E-08 46.8 3.4 24 16-39 8-31 (196)
338 3te6_A Regulatory protein SIR3 97.0 0.0082 2.8E-07 44.6 9.9 34 7-40 35-68 (318)
339 1rz3_A Hypothetical protein rb 97.0 0.001 3.5E-08 45.9 4.7 25 15-39 20-44 (201)
340 3nh6_A ATP-binding cassette SU 96.9 0.00024 8.2E-09 52.6 1.5 24 18-41 81-104 (306)
341 1ukz_A Uridylate kinase; trans 96.9 0.00069 2.4E-08 46.6 3.8 25 15-39 13-37 (203)
342 1zd8_A GTP:AMP phosphotransfer 96.9 0.00054 1.9E-08 48.1 3.3 23 17-39 7-29 (227)
343 1uf9_A TT1252 protein; P-loop, 96.9 0.00065 2.2E-08 46.6 3.6 25 15-39 6-30 (203)
344 1lw7_A Transcriptional regulat 96.9 0.00048 1.6E-08 52.1 3.1 26 17-42 170-195 (365)
345 4a74_A DNA repair and recombin 96.9 0.00051 1.7E-08 48.0 3.1 21 19-39 27-47 (231)
346 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.0006 2E-08 51.0 3.6 25 18-42 172-196 (330)
347 4ido_A Atlastin-1; GTPase, GTP 96.9 0.0025 8.6E-08 49.5 7.1 27 13-39 63-89 (457)
348 2pjz_A Hypothetical protein ST 96.9 0.0005 1.7E-08 49.7 3.0 23 19-41 32-54 (263)
349 2gza_A Type IV secretion syste 96.9 0.00061 2.1E-08 51.5 3.5 27 16-42 174-200 (361)
350 2wwf_A Thymidilate kinase, put 96.9 0.00064 2.2E-08 47.0 3.4 24 16-39 9-32 (212)
351 1odf_A YGR205W, hypothetical 3 96.9 0.0012 4E-08 48.5 4.9 26 14-39 28-53 (290)
352 2ehv_A Hypothetical protein PH 96.9 0.00054 1.8E-08 48.5 3.0 20 19-38 32-51 (251)
353 2f1r_A Molybdopterin-guanine d 96.9 0.00029 9.8E-09 47.7 1.5 22 19-40 4-25 (171)
354 1np6_A Molybdopterin-guanine d 96.9 0.00062 2.1E-08 46.2 3.1 22 18-39 7-28 (174)
355 1via_A Shikimate kinase; struc 96.9 0.00056 1.9E-08 46.0 2.9 21 19-39 6-26 (175)
356 2pbr_A DTMP kinase, thymidylat 96.9 0.00068 2.3E-08 46.1 3.3 21 19-39 2-22 (195)
357 3jvv_A Twitching mobility prot 96.9 0.0008 2.8E-08 50.8 3.9 26 16-41 122-147 (356)
358 2p65_A Hypothetical protein PF 96.9 0.00084 2.9E-08 45.1 3.7 34 7-40 33-66 (187)
359 3tui_C Methionine import ATP-b 96.9 0.00048 1.7E-08 52.1 2.7 23 19-41 56-78 (366)
360 2xb4_A Adenylate kinase; ATP-b 96.9 0.00069 2.3E-08 47.6 3.3 22 18-39 1-22 (223)
361 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00049 1.7E-08 52.0 2.6 23 19-41 32-54 (359)
362 1zak_A Adenylate kinase; ATP:A 96.9 0.00061 2.1E-08 47.7 3.0 23 17-39 5-27 (222)
363 1qf9_A UMP/CMP kinase, protein 96.8 0.00091 3.1E-08 45.4 3.7 22 18-39 7-28 (194)
364 2bbs_A Cystic fibrosis transme 96.8 0.00064 2.2E-08 49.9 3.0 22 19-40 66-87 (290)
365 1gvn_B Zeta; postsegregational 96.8 0.00085 2.9E-08 49.1 3.6 24 16-39 32-55 (287)
366 2z0h_A DTMP kinase, thymidylat 96.8 0.00082 2.8E-08 45.9 3.4 22 19-40 2-23 (197)
367 1vht_A Dephospho-COA kinase; s 96.8 0.00094 3.2E-08 46.5 3.7 23 17-39 4-26 (218)
368 1uj2_A Uridine-cytidine kinase 96.8 0.00089 3E-08 47.9 3.6 25 15-39 20-44 (252)
369 2pez_A Bifunctional 3'-phospho 96.8 0.00095 3.2E-08 45.0 3.6 24 16-39 4-27 (179)
370 3iij_A Coilin-interacting nucl 96.8 0.0007 2.4E-08 45.7 2.9 23 17-39 11-33 (180)
371 2kjq_A DNAA-related protein; s 96.8 0.00062 2.1E-08 44.9 2.5 25 17-41 36-60 (149)
372 4e22_A Cytidylate kinase; P-lo 96.8 0.00077 2.6E-08 48.3 3.2 23 16-38 26-48 (252)
373 1z47_A CYSA, putative ABC-tran 96.8 0.0006 2.1E-08 51.5 2.7 23 19-41 43-65 (355)
374 3rlf_A Maltose/maltodextrin im 96.8 0.00061 2.1E-08 51.9 2.7 23 19-41 31-53 (381)
375 1p9r_A General secretion pathw 96.8 0.0017 5.8E-08 50.1 5.1 28 15-42 165-192 (418)
376 2yyz_A Sugar ABC transporter, 96.8 0.00064 2.2E-08 51.4 2.7 23 19-41 31-53 (359)
377 2vli_A Antibiotic resistance p 96.8 0.00063 2.2E-08 45.9 2.5 23 17-39 5-27 (183)
378 1ak2_A Adenylate kinase isoenz 96.8 0.001 3.5E-08 47.0 3.5 25 15-39 14-38 (233)
379 2bwj_A Adenylate kinase 5; pho 96.8 0.00096 3.3E-08 45.6 3.3 22 18-39 13-34 (199)
380 1xjc_A MOBB protein homolog; s 96.8 0.001 3.5E-08 44.8 3.3 23 17-39 4-26 (169)
381 2it1_A 362AA long hypothetical 96.8 0.00068 2.3E-08 51.3 2.7 23 19-41 31-53 (362)
382 2grj_A Dephospho-COA kinase; T 96.8 0.0012 4.2E-08 45.4 3.8 25 15-39 10-34 (192)
383 2ze6_A Isopentenyl transferase 96.8 0.00087 3E-08 48.1 3.1 21 19-39 3-23 (253)
384 2ewv_A Twitching motility prot 96.7 0.00089 3.1E-08 50.8 3.3 26 16-41 135-160 (372)
385 1g29_1 MALK, maltose transport 96.7 0.00071 2.4E-08 51.4 2.7 22 19-40 31-52 (372)
386 2iyv_A Shikimate kinase, SK; t 96.7 0.00083 2.8E-08 45.5 2.8 21 19-39 4-24 (184)
387 1v43_A Sugar-binding transport 96.7 0.00072 2.5E-08 51.3 2.7 23 19-41 39-61 (372)
388 2x8a_A Nuclear valosin-contain 96.7 0.00091 3.1E-08 48.6 3.1 20 20-39 47-66 (274)
389 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0012 4E-08 47.6 3.6 23 17-39 4-26 (260)
390 2oap_1 GSPE-2, type II secreti 96.7 0.0011 3.9E-08 52.4 3.7 24 18-41 261-284 (511)
391 1zuh_A Shikimate kinase; alpha 96.7 0.0012 4E-08 44.1 3.3 22 18-39 8-29 (168)
392 1fnn_A CDC6P, cell division co 96.7 0.053 1.8E-06 40.7 12.9 22 19-40 46-67 (389)
393 2p5t_B PEZT; postsegregational 96.7 0.00079 2.7E-08 48.2 2.6 24 16-39 31-54 (253)
394 1e6c_A Shikimate kinase; phosp 96.7 0.0011 3.6E-08 44.4 3.1 21 19-39 4-24 (173)
395 3b9q_A Chloroplast SRP recepto 96.7 0.00098 3.3E-08 49.2 3.1 25 17-41 100-124 (302)
396 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.033 1.1E-06 41.3 11.4 24 16-39 44-67 (322)
397 1ixz_A ATP-dependent metallopr 96.7 0.0011 3.7E-08 47.4 3.1 20 20-39 52-71 (254)
398 3bos_A Putative DNA replicatio 96.7 0.0021 7.3E-08 44.9 4.6 24 16-39 51-74 (242)
399 3kta_A Chromosome segregation 96.6 0.0011 3.6E-08 44.8 2.8 22 19-40 28-49 (182)
400 1gtv_A TMK, thymidylate kinase 96.6 0.00046 1.6E-08 47.8 0.9 21 19-39 2-22 (214)
401 3d31_A Sulfate/molybdate ABC t 96.6 0.00059 2E-08 51.4 1.5 23 19-41 28-50 (348)
402 3r20_A Cytidylate kinase; stru 96.6 0.0013 4.6E-08 46.6 3.1 24 16-39 8-31 (233)
403 2vp4_A Deoxynucleoside kinase; 96.6 0.0013 4.4E-08 46.4 3.0 26 15-40 18-43 (230)
404 2f6r_A COA synthase, bifunctio 96.6 0.0016 5.4E-08 47.5 3.5 23 16-38 74-96 (281)
405 3gd7_A Fusion complex of cysti 96.6 0.0012 4.2E-08 50.4 3.0 22 19-40 49-70 (390)
406 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0018 6.2E-08 51.5 3.9 26 18-43 48-73 (538)
407 2chg_A Replication factor C sm 96.5 0.0026 8.8E-08 43.7 4.2 21 19-39 40-60 (226)
408 1in4_A RUVB, holliday junction 96.5 0.0015 5E-08 48.8 3.1 23 18-40 52-74 (334)
409 1oxx_K GLCV, glucose, ABC tran 96.5 0.00057 1.9E-08 51.6 0.8 22 19-40 33-54 (353)
410 3euj_A Chromosome partition pr 96.5 0.0019 6.4E-08 50.7 3.7 26 18-43 30-55 (483)
411 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0016 5.5E-08 45.4 3.1 21 19-39 25-45 (235)
412 1iy2_A ATP-dependent metallopr 96.5 0.0015 5.3E-08 47.3 3.1 20 20-39 76-95 (278)
413 1m7g_A Adenylylsulfate kinase; 96.5 0.0022 7.4E-08 44.5 3.7 25 15-39 23-47 (211)
414 3b5x_A Lipid A export ATP-bind 96.5 0.0017 5.7E-08 52.2 3.6 26 18-43 370-395 (582)
415 3nwj_A ATSK2; P loop, shikimat 96.5 0.0015 5.1E-08 46.9 2.9 23 17-39 48-70 (250)
416 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0014 4.7E-08 51.2 2.9 26 16-41 137-162 (460)
417 3umf_A Adenylate kinase; rossm 96.5 0.0024 8.1E-08 44.9 3.7 21 19-39 31-51 (217)
418 3ozx_A RNAse L inhibitor; ATP 96.5 0.0018 6.2E-08 51.5 3.4 26 18-43 26-51 (538)
419 2og2_A Putative signal recogni 96.5 0.0017 5.9E-08 49.0 3.1 25 17-41 157-181 (359)
420 4eaq_A DTMP kinase, thymidylat 96.4 0.0024 8.2E-08 45.1 3.7 26 16-41 25-50 (229)
421 3gmt_A Adenylate kinase; ssgci 96.4 0.0021 7.2E-08 45.5 3.3 24 16-39 7-30 (230)
422 3h4m_A Proteasome-activating n 96.4 0.0034 1.2E-07 45.4 4.5 25 15-39 49-73 (285)
423 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0017 5.8E-08 42.7 2.6 20 20-39 26-45 (149)
424 3b60_A Lipid A export ATP-bind 96.4 0.0015 5.2E-08 52.4 2.7 24 18-41 370-393 (582)
425 3j16_B RLI1P; ribosome recycli 96.4 0.0022 7.5E-08 51.8 3.6 27 19-45 105-131 (608)
426 4b4t_L 26S protease subunit RP 96.4 0.065 2.2E-06 41.5 11.7 32 8-39 206-237 (437)
427 1cr0_A DNA primase/helicase; R 96.4 0.0019 6.6E-08 47.2 3.1 23 19-41 37-59 (296)
428 2obl_A ESCN; ATPase, hydrolase 96.4 0.0021 7.2E-08 48.4 3.3 23 18-40 72-94 (347)
429 1lv7_A FTSH; alpha/beta domain 96.4 0.002 6.9E-08 46.0 3.1 23 17-39 45-67 (257)
430 1d2n_A N-ethylmaleimide-sensit 96.4 0.0046 1.6E-07 44.5 5.0 26 14-39 61-86 (272)
431 1nij_A Hypothetical protein YJ 96.4 0.0025 8.5E-08 47.3 3.5 23 18-40 5-27 (318)
432 3v9p_A DTMP kinase, thymidylat 96.3 0.0022 7.5E-08 45.4 2.9 24 16-39 24-47 (227)
433 2cvh_A DNA repair and recombin 96.3 0.0025 8.5E-08 44.2 3.1 21 19-39 22-42 (220)
434 3bk7_A ABC transporter ATP-bin 96.3 0.0027 9.1E-08 51.3 3.6 26 18-43 118-143 (607)
435 1q3t_A Cytidylate kinase; nucl 96.3 0.003 1E-07 44.6 3.6 24 16-39 15-38 (236)
436 1ltq_A Polynucleotide kinase; 96.3 0.0028 9.7E-08 46.3 3.5 22 18-39 3-24 (301)
437 1a7j_A Phosphoribulokinase; tr 96.3 0.0016 5.6E-08 47.7 2.1 24 16-39 4-27 (290)
438 2w58_A DNAI, primosome compone 96.3 0.003 1E-07 43.3 3.4 22 18-39 55-76 (202)
439 2yl4_A ATP-binding cassette SU 96.3 0.0016 5.4E-08 52.5 2.1 23 19-41 372-394 (595)
440 3qf4_B Uncharacterized ABC tra 96.3 0.0017 5.7E-08 52.4 2.3 24 18-41 382-405 (598)
441 3ake_A Cytidylate kinase; CMP 96.3 0.0031 1.1E-07 43.3 3.4 21 19-39 4-24 (208)
442 3ozx_A RNAse L inhibitor; ATP 96.2 0.0031 1.1E-07 50.2 3.6 24 19-42 296-319 (538)
443 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0034 1.2E-07 50.0 3.9 25 19-43 314-338 (538)
444 2dpy_A FLII, flagellum-specifi 96.2 0.0029 9.8E-08 49.1 3.3 24 17-40 157-180 (438)
445 3cf0_A Transitional endoplasmi 96.2 0.0047 1.6E-07 45.3 4.3 25 15-39 47-71 (301)
446 1n0w_A DNA repair protein RAD5 96.2 0.0029 1E-07 44.5 3.1 21 19-39 26-46 (243)
447 1svm_A Large T antigen; AAA+ f 96.2 0.0029 9.9E-08 48.1 3.1 25 16-40 168-192 (377)
448 4a82_A Cystic fibrosis transme 96.2 0.0014 4.8E-08 52.6 1.3 24 18-41 368-391 (578)
449 3n70_A Transport activator; si 96.2 0.0035 1.2E-07 40.9 3.1 25 15-39 22-46 (145)
450 3bk7_A ABC transporter ATP-bin 96.2 0.0038 1.3E-07 50.4 3.8 25 19-43 384-408 (607)
451 3la6_A Tyrosine-protein kinase 96.2 0.23 7.9E-06 36.1 13.6 67 68-139 202-268 (286)
452 1tue_A Replication protein E1; 96.2 0.0032 1.1E-07 43.9 2.9 22 19-40 60-81 (212)
453 1njg_A DNA polymerase III subu 96.1 0.0035 1.2E-07 43.6 3.1 22 19-40 47-68 (250)
454 3qf7_A RAD50; ABC-ATPase, ATPa 96.1 0.0031 1.1E-07 47.7 2.9 20 20-39 26-45 (365)
455 3syl_A Protein CBBX; photosynt 96.1 0.0052 1.8E-07 44.9 4.0 26 14-39 64-89 (309)
456 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0077 2.6E-07 45.4 4.9 25 15-39 22-46 (359)
457 3ld9_A DTMP kinase, thymidylat 96.1 0.0047 1.6E-07 43.5 3.5 25 15-39 19-43 (223)
458 3qf4_A ABC transporter, ATP-bi 96.1 0.002 6.8E-08 51.8 1.8 24 18-41 370-393 (587)
459 3t15_A Ribulose bisphosphate c 96.1 0.0042 1.4E-07 45.5 3.4 24 16-39 35-58 (293)
460 3b9p_A CG5977-PA, isoform A; A 96.1 0.0037 1.3E-07 45.5 3.0 24 16-39 53-76 (297)
461 3pxg_A Negative regulator of g 96.0 0.0062 2.1E-07 47.6 4.3 31 10-40 194-224 (468)
462 3pfi_A Holliday junction ATP-d 96.0 0.017 5.7E-07 42.8 6.5 24 16-39 54-77 (338)
463 1sxj_E Activator 1 40 kDa subu 96.0 0.0051 1.7E-07 45.9 3.7 21 19-39 38-58 (354)
464 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0052 1.8E-07 43.7 3.5 24 16-39 38-61 (262)
465 4fcw_A Chaperone protein CLPB; 96.0 0.0055 1.9E-07 44.8 3.7 24 17-40 47-70 (311)
466 3j16_B RLI1P; ribosome recycli 96.0 0.0053 1.8E-07 49.6 3.8 28 19-46 380-407 (608)
467 1nlf_A Regulatory protein REPA 96.0 0.0045 1.5E-07 44.9 3.1 21 19-39 32-52 (279)
468 4f4c_A Multidrug resistance pr 95.9 0.0033 1.1E-07 55.1 2.7 26 18-43 1106-1131(1321)
469 1p5z_B DCK, deoxycytidine kina 95.9 0.0032 1.1E-07 45.2 2.2 25 15-39 22-46 (263)
470 4b4t_M 26S protease regulatory 95.9 0.0078 2.7E-07 46.6 4.4 31 9-39 207-237 (434)
471 2h92_A Cytidylate kinase; ross 95.9 0.0045 1.6E-07 43.0 2.9 23 17-39 3-25 (219)
472 3d3q_A TRNA delta(2)-isopenten 95.9 0.0048 1.6E-07 46.2 3.1 23 18-40 8-30 (340)
473 2px0_A Flagellar biosynthesis 95.9 0.0053 1.8E-07 45.1 3.3 116 17-139 105-253 (296)
474 3crm_A TRNA delta(2)-isopenten 95.9 0.0054 1.8E-07 45.6 3.3 22 18-39 6-27 (323)
475 1l8q_A Chromosomal replication 95.9 0.0048 1.6E-07 45.6 3.1 22 18-39 38-59 (324)
476 2qmh_A HPR kinase/phosphorylas 95.9 0.005 1.7E-07 42.6 2.9 23 17-39 34-56 (205)
477 3zvl_A Bifunctional polynucleo 95.9 0.0057 1.9E-07 47.1 3.5 24 16-39 257-280 (416)
478 3qks_A DNA double-strand break 95.9 0.0046 1.6E-07 42.8 2.6 20 20-39 26-45 (203)
479 1c9k_A COBU, adenosylcobinamid 95.8 0.0054 1.8E-07 41.7 2.8 20 20-39 2-21 (180)
480 1sxj_C Activator 1 40 kDa subu 95.8 0.0083 2.8E-07 44.7 4.1 22 19-40 48-69 (340)
481 1sxj_D Activator 1 41 kDa subu 95.8 0.0091 3.1E-07 44.4 4.3 22 19-40 60-81 (353)
482 3vfd_A Spastin; ATPase, microt 95.8 0.042 1.4E-06 41.7 8.0 24 16-39 147-170 (389)
483 2qby_A CDC6 homolog 1, cell di 95.8 0.0055 1.9E-07 45.9 3.0 25 16-40 44-68 (386)
484 4b4t_K 26S protease regulatory 95.8 0.0097 3.3E-07 46.0 4.4 25 15-39 204-228 (428)
485 3a8t_A Adenylate isopentenyltr 95.7 0.0079 2.7E-07 45.0 3.7 23 18-40 41-63 (339)
486 3cr8_A Sulfate adenylyltranfer 95.7 0.0045 1.6E-07 49.4 2.4 26 16-41 368-393 (552)
487 1ofh_A ATP-dependent HSL prote 95.7 0.0065 2.2E-07 44.3 3.1 24 16-39 49-72 (310)
488 2ocp_A DGK, deoxyguanosine kin 95.7 0.0083 2.8E-07 42.4 3.5 23 18-40 3-25 (241)
489 3co5_A Putative two-component 95.7 0.0033 1.1E-07 40.9 1.3 25 15-39 25-49 (143)
490 1vma_A Cell division protein F 95.7 0.0087 3E-07 44.2 3.7 23 18-40 105-127 (306)
491 3exa_A TRNA delta(2)-isopenten 95.7 0.0085 2.9E-07 44.4 3.6 22 18-39 4-25 (322)
492 2dr3_A UPF0273 protein PH0284; 95.7 0.0069 2.3E-07 42.6 3.0 20 19-38 25-44 (247)
493 1pzn_A RAD51, DNA repair and r 95.6 0.007 2.4E-07 45.5 3.1 22 19-40 133-154 (349)
494 4b4t_J 26S protease regulatory 95.6 0.01 3.5E-07 45.5 3.9 32 8-39 173-204 (405)
495 2r62_A Cell division protease 95.6 0.0049 1.7E-07 44.2 2.0 23 18-40 45-67 (268)
496 2qby_B CDC6 homolog 3, cell di 95.6 0.015 5E-07 43.8 4.7 23 17-39 45-67 (384)
497 3eie_A Vacuolar protein sortin 95.6 0.0098 3.3E-07 44.0 3.6 24 16-39 50-73 (322)
498 3ea0_A ATPase, para family; al 95.5 0.3 1E-05 34.0 11.2 80 68-151 119-198 (245)
499 1qhl_A Protein (cell division 95.5 0.0025 8.6E-08 45.0 0.2 23 20-42 30-52 (227)
500 3foz_A TRNA delta(2)-isopenten 95.5 0.012 4E-07 43.6 3.8 22 18-39 11-32 (316)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.9e-33 Score=192.70 Aligned_cols=162 Identities=35% Similarity=0.673 Sum_probs=133.7
Q ss_pred ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
||.++++++. .++++.++|+++|++|+|||||++++.+ +... .+.+|.+.....+...+..+.+|||||++.
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM------NEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT------TSCE-EEECCSCSSCEEEEETTEEEEEEECCC---
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc------CCCC-cCcCCCccceEEEEECCEEEEEEECCCCHh
Confidence 8999999998 6778899999999999999999999986 2222 445666666667778889999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
+...+..+++.+|++|+|+|++++.+++....++..+.......+.|+++|+||+|+.+....+++.+.+....+....+
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 152 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW 152 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc
Confidence 98888999999999999999999999999999999988764446899999999999988777788777776444445678
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
+++++||++|
T Consensus 153 ~~~~~Sa~~g 162 (187)
T 1zj6_A 153 HIQACCALTG 162 (187)
T ss_dssp EEEECBTTTT
T ss_pred EEEEccCCCC
Confidence 9999999986
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=190.50 Aligned_cols=163 Identities=39% Similarity=0.675 Sum_probs=135.2
Q ss_pred ChhhhHHHHhhhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848 1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (170)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 79 (170)
||.+++++++.++. ++.++|+++|++|+|||||++++.+ +.. ....++.+.....+...+..+.+|||||++
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI------GEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC------SEE-EEECSSTTCCEEEEEETTEEEEEEEEC---
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc------CCc-CccCCcCccceEEEEECCEEEEEEECCCCH
Confidence 89999999999888 8999999999999999999999975 111 344566666666777888999999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccce
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 159 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
.+...+..+++.+|++++|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.........
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~ 153 (183)
T 1moz_A 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRS 153 (183)
T ss_dssp -CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSC
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCc
Confidence 88888888999999999999999999999999999998776555789999999999998877788888877755555567
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++++++||++|
T Consensus 154 ~~~~~~Sa~~~ 164 (183)
T 1moz_A 154 WSIVASSAIKG 164 (183)
T ss_dssp EEEEEEBGGGT
T ss_pred eEEEEccCCCC
Confidence 89999999986
No 3
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=5.4e-32 Score=187.83 Aligned_cols=161 Identities=39% Similarity=0.665 Sum_probs=127.3
Q ss_pred ChhhhHHHHhhhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848 1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (170)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 79 (170)
|| +++ .+.+.+. ++.++|+++|++|+|||||++++.+ +. ...+.+|.+.....+...+..+.+|||||++
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNG------ED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTT------CC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSH
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhc------CC-CCcccccCccceEEEEECCEEEEEEECCCCH
Confidence 56 555 5555555 7889999999999999999999986 22 4455677777777788888999999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccce
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 159 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
.+...+..+++.+|++++|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.........
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (186)
T 1ksh_A 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHH 153 (186)
T ss_dssp HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSC
T ss_pred hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCc
Confidence 99888888999999999999999999999999999888776555689999999999998877777777777644444567
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++++++||++|
T Consensus 154 ~~~~~~Sa~~~ 164 (186)
T 1ksh_A 154 WRIQGCSAVTG 164 (186)
T ss_dssp EEEEECCTTTC
T ss_pred eEEEEeeCCCC
Confidence 89999999986
No 4
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=2.5e-32 Score=190.09 Aligned_cols=163 Identities=36% Similarity=0.601 Sum_probs=134.1
Q ss_pred ChhhhHHHHh--hhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 1 MFSLFYGLWK--YIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
||.+++++++ +.+. ++.++|+++|++|+|||||++++.. +.. ....+|.+.....+...+..+.+|||||
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~Dt~G 75 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHL------GDV-VTTVPTVGVNLETLQYKNISFEVWDLGG 75 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCC------SCC-EEECSSTTCCEEEEEETTEEEEEEEECC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHc------CCC-CCcCCCCceEEEEEEECCEEEEEEECCC
Confidence 8878877777 5566 7899999999999999999999964 221 2345677777777888889999999999
Q ss_pred CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccc
Q 030848 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDE 157 (170)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~ 157 (170)
++.+...+..+++.+|++++|+|++++.+++....++..+.......+.|+++|+||+|+.+....+++.+.........
T Consensus 76 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 155 (189)
T 2x77_A 76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN 155 (189)
T ss_dssp SSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS
T ss_pred CHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccC
Confidence 99988888888999999999999999999999999998888765557899999999999988777777777766555556
Q ss_pred ceeEEEeeeccCC
Q 030848 158 RVCMFEAVSGYDG 170 (170)
Q Consensus 158 ~~~~~~~~Sa~~g 170 (170)
..+++++|||++|
T Consensus 156 ~~~~~~~~Sa~~~ 168 (189)
T 2x77_A 156 RTWTIVKSSSKTG 168 (189)
T ss_dssp SCEEEEECCTTTC
T ss_pred CceEEEEccCCCc
Confidence 6789999999986
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.98 E-value=2.3e-31 Score=186.06 Aligned_cols=161 Identities=36% Similarity=0.667 Sum_probs=130.3
Q ss_pred hhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch
Q 030848 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 82 (170)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 82 (170)
+++..+++..+.++.++|+++|++|+|||||++++.. +.. ....||.+.....++..+..+.+|||||++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 15 VPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKL------GEI-VTTIPTIGFNVETVEYKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp --CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCS------SCC-EEEEEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred chHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHh------CCc-cccCCcCceeEEEEEECCEEEEEEECCCCHhHH
Confidence 3556677888888999999999999999999999965 222 234567777777788888999999999999999
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
..+..+++.+|++|+|+|++++.+++....++..+.......+.|+++|+||+|+.+....+++.+.+.........+++
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 99999999999999999999999999999999988776555689999999999998877777777777655555667899
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
++|||++|
T Consensus 168 ~~~SA~~g 175 (192)
T 2b6h_A 168 QATCATQG 175 (192)
T ss_dssp EECBTTTT
T ss_pred EECcCCCc
Confidence 99999986
No 6
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.2e-30 Score=182.05 Aligned_cols=163 Identities=33% Similarity=0.528 Sum_probs=123.0
Q ss_pred ChhhhHHHHhhh-ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848 1 MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (170)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 79 (170)
|+.++++.+... ...+.++|+++|++|+|||||++++.+ +.. ..+.+|.+.....+...+..+.+|||||++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN------DRL-ATLQPTWHPTSEELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp ------------------CEEEEEESTTSSHHHHHHHHHH------SCC-CCCCCCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhc------CCC-CccccCCCCCeEEEEECCEEEEEEECCCCH
Confidence 455666665544 456788999999999999999999986 221 234566666677788888999999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc-----
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK----- 154 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~----- 154 (170)
.+...+..+++.+|++++|+|++++.+++....++..+.......+.|+++++||+|+.+..+.+++.+.+....
T Consensus 79 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T 1m2o_B 79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ 158 (190)
T ss_dssp GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC--
T ss_pred HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccc
Confidence 998888889999999999999999999999999999887765556899999999999988778888888776332
Q ss_pred --cccceeEEEeeeccCC
Q 030848 155 --LDERVCMFEAVSGYDG 170 (170)
Q Consensus 155 --~~~~~~~~~~~Sa~~g 170 (170)
.....+++++|||++|
T Consensus 159 ~~~~~~~~~~~~~Sa~~g 176 (190)
T 1m2o_B 159 RIEGQRPVEVFMCSVVMR 176 (190)
T ss_dssp -CCSSCCEEEEECBTTTT
T ss_pred cccccceEEEEEeECCcC
Confidence 2235689999999986
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=2.1e-31 Score=189.52 Aligned_cols=144 Identities=25% Similarity=0.400 Sum_probs=114.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
.+++||+++|++|+|||||++++.. +.+...+.+|++..+.. +. .....+.||||+|++++..++..+++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~------~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~ 84 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIR 84 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH------SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHT
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHh------CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhc
Confidence 3568999999999999999999987 56666777887765443 22 33467999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.++++++|||++++.+|+.+..|+..+..... ++.|+++|+||+|+.+ ..+.++..+.++ ..+++|++|||+
T Consensus 85 ~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~SAk 158 (216)
T 4dkx_A 85 DSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAK 158 (216)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEEBTT
T ss_pred cccEEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHH-----HhCCeeEEEeCC
Confidence 99999999999999999999999998876543 6799999999999976 578888888887 556789999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 159 tg 160 (216)
T 4dkx_A 159 AG 160 (216)
T ss_dssp TT
T ss_pred CC
Confidence 87
No 8
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=3.8e-30 Score=179.07 Aligned_cols=153 Identities=35% Similarity=0.663 Sum_probs=129.5
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
...++.+||+++|++|+|||||++++.+ +.....+.+|.+.....+...+..+.+|||||++.+...+..+++.
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRG 90 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTT
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHc------CCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHcc
Confidence 3456789999999999999999999987 3344456678888877788889999999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|++|+|+|++++.+++....++..+.......+.|+++|+||+|+.+....+++.+.+.........++++++||++|
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 169 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEK 169 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence 9999999999999999999999998877644468999999999999887777777777665545556789999999986
No 9
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2e-30 Score=179.57 Aligned_cols=149 Identities=41% Similarity=0.708 Sum_probs=125.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
...++|+++|++|+|||||++++.+ . ....+.+|.+.....+...+..+.+|||||++.+...+..+++.+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~------~-~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS------E-DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC------S-CCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc------C-CCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 5789999999999999999999976 1 22345677777766777888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.........+++++|||++|
T Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 162 (181)
T 1fzq_A 87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 162 (181)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCC
Confidence 9999999999999999989888876555568999999999999887777777776664444456789999999987
No 10
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=7.9e-30 Score=173.27 Aligned_cols=146 Identities=36% Similarity=0.684 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 97 (170)
+||+++|++|+|||||++++.+.. .. ...||.+.....+...+..+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~------~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE------IV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC------SS-CCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC------cC-cccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence 589999999999999999997621 11 23456676666778888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|+|++++.+++....++..+......++.|+++++||+|+.+....+++.+...........+++++|||++|
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 146 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCC
Confidence 9999999999999999988877655568999999999999887777777777665545556789999999986
No 11
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=2.8e-30 Score=181.39 Aligned_cols=151 Identities=31% Similarity=0.509 Sum_probs=118.8
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
...+.++|+++|++|+|||||++++.+ +.. ..+.+|.+.....+...+..+.+|||||++.+...+..+++.+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKD------DRL-GQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI 93 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSC------C-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhc------CCC-CccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcC
Confidence 456789999999999999999999975 111 2344555555566778889999999999999988888899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc---------c---cccee
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK---------L---DERVC 160 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~ 160 (170)
|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+....+++.+.+.... + ....+
T Consensus 94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 173 (198)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence 99999999999999999999999887765556899999999999988778888888776332 1 12567
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
++++|||++|
T Consensus 174 ~~~~~SA~~g 183 (198)
T 1f6b_A 174 EVFMCSVLKR 183 (198)
T ss_dssp EEEECBTTTT
T ss_pred EEEEEECCCC
Confidence 9999999987
No 12
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=2.1e-29 Score=172.14 Aligned_cols=149 Identities=38% Similarity=0.640 Sum_probs=126.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
++.++|+++|++|+|||||++++.+ +.. ....++.+.....+...+..+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 77 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV------GEV-VTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDA 77 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH------SSC-CCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc------CCC-CCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 4679999999999999999999976 222 234567777777788889999999999999999888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+|++++.+++....++..+.......+.|+++++||+|+.+.....++.+.+.........++++++||++|
T Consensus 78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (171)
T 1upt_A 78 VIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKG 153 (171)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCC
Confidence 9999999999999999999988877655568999999999999887777777777665445556789999999986
No 13
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=176.12 Aligned_cols=152 Identities=35% Similarity=0.639 Sum_probs=125.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
..+.++|+++|.+|+|||||++++.+... ....+.+|.+.....+...+..+.+|||||++.+...+..+++.+|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~-----~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNA-----QSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGG-----CCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCC-----CCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34679999999999999999999976221 2233556777777778888899999999999999998889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCC--CCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDL--QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|+|++++.+++....++..+...... .+.|+++|+||+|+.+....+++.+.+....+....++++++||++|
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 999999999999999999999988876544 57899999999999887788888877764444456789999999986
No 14
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.2e-29 Score=175.59 Aligned_cols=149 Identities=35% Similarity=0.649 Sum_probs=125.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
.+.+||+++|.+|+|||||++++.+ +.. ....++.+.....+...+..+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM------NEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT------TSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc------CCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 4678999999999999999999986 222 445566666666777888999999999999998888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|+|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.........++++++||++|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 9999999999999999999998887654568999999999999887778888887765555556789999999986
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=1e-29 Score=177.83 Aligned_cols=153 Identities=33% Similarity=0.599 Sum_probs=125.3
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC-cccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
.......+|+++|.+|+|||||++++.+ +.... .+.+|.+.....++..+..+.+|||||++.+...+..+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKP------AQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSC------CC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhc------CCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 3456788999999999999999999976 33333 4567888888788888999999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-------CCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccceeEE
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-------QGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMF 162 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~ 162 (170)
.+|++|+|+|++++.+++....|+..+...... .+.|+++|+||+|+.+....+++.+.+..... ....+++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999999999888765221 37899999999999988777777777764333 4577899
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
++|||++|
T Consensus 166 ~~~Sa~~g 173 (199)
T 4bas_A 166 FASNGLKG 173 (199)
T ss_dssp EECBTTTT
T ss_pred EEeeCCCc
Confidence 99999986
No 16
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=3.7e-28 Score=165.15 Aligned_cols=145 Identities=20% Similarity=0.301 Sum_probs=112.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
.+.+||+++|++|+|||||++++.+ +.....+.++...... .+... ...+.+||+||++.+...+..+++.
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 75 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS 75 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh------CccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhc
Confidence 4679999999999999999999987 2233344444444432 23333 3579999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+ ....++..+.++ ...++++++||++
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 150 (168)
T 1u8z_A 76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKT 150 (168)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCC
Confidence 999999999999999999999988887765556899999999999976 455667766665 4456899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 151 ~ 151 (168)
T 1u8z_A 151 R 151 (168)
T ss_dssp C
T ss_pred C
Confidence 6
No 17
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=3.6e-28 Score=165.30 Aligned_cols=145 Identities=23% Similarity=0.393 Sum_probs=113.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
+.+||+++|++|+|||||++++.+ +.....+.++.+..... +.. ....+.+||+||++.+...+..+++.+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 75 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG 75 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC
Confidence 468999999999999999999987 33334444555544332 222 346799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+. ...++..+..+. ...++++++||++|
T Consensus 76 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~ 151 (167)
T 1c1y_A 76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSK 151 (167)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCC
Confidence 999999999999999998888888876544468999999999999763 445666655541 12578999999986
No 18
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.9e-28 Score=182.05 Aligned_cols=150 Identities=37% Similarity=0.698 Sum_probs=125.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
.++.+||+++|.+|+|||||++++.+ +.. ....+|.+.....++..+..+.+|||||++.+...+..+++.+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~------~~~-~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 234 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKL------GEI-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 234 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCS------SCC-EEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhC------CCC-CCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 45678999999999999999999975 222 23346888888888889999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++|+|+|++++.+++....++..+......++.|+++|+||+|+.+....+++.+.+.........++++++||++|
T Consensus 235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g 311 (329)
T 3o47_A 235 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 311 (329)
T ss_dssp EEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence 99999999999999999999998887766678999999999999988888888888876666677899999999986
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=4.2e-28 Score=167.37 Aligned_cols=146 Identities=22% Similarity=0.253 Sum_probs=114.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
..+.++|+++|++|+|||||++++.. +.....+.++.+.... .+...+ ..+.+|||||++.+...+..+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 76 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVE------GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSI 76 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTT
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHh
Confidence 34679999999999999999999986 3334444555555432 233333 67899999999998888888999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....++..+.++ ...++++++||+
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 151 (181)
T 3t5g_A 77 DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAK 151 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCcEEEEecC
Confidence 9999999999999999999999998887766657899999999999964 456677777766 445689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 152 ~~ 153 (181)
T 3t5g_A 152 EN 153 (181)
T ss_dssp SH
T ss_pred CC
Confidence 75
No 20
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=1.3e-27 Score=162.84 Aligned_cols=144 Identities=24% Similarity=0.395 Sum_probs=113.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
.+.++|+++|++|+|||||++++.+ +.......++.+.... .+.. ....+.+||+||++.+...+..+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 77 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVK------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYR 77 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhcc
Confidence 4679999999999999999999987 3333334455554432 2333 3568999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++....|+..+..... ++.|+++++||+|+.+ ....++..+.+. ...++++++||+
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 151 (170)
T 1r2q_A 78 GAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAK 151 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCC
Confidence 99999999999999999998888888866433 6789999999999975 345566666655 455789999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 152 ~g 153 (170)
T 1r2q_A 152 TS 153 (170)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 21
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=5e-28 Score=167.28 Aligned_cols=146 Identities=21% Similarity=0.281 Sum_probs=116.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
..+.+||+++|++|+|||||++++.. ......+.+++..... .....+ ..+.+||+||++.+...+..+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 88 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQ------KIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence 45789999999999999999999986 3333444455544432 233333 45777999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+.+ ....++..+.++ ...++++++||+
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 163 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAK 163 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccC
Confidence 9999999999999999999999988887655557899999999999976 566677777666 344689999999
Q ss_pred -CC
Q 030848 169 -DG 170 (170)
Q Consensus 169 -~g 170 (170)
+|
T Consensus 164 ~~~ 166 (183)
T 3kkq_A 164 DPP 166 (183)
T ss_dssp SSC
T ss_pred CCC
Confidence 65
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=2.3e-27 Score=164.65 Aligned_cols=143 Identities=20% Similarity=0.298 Sum_probs=110.9
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
.+.+.+||+++|++|+|||||++++.+ +.....+.++.+.....+...+ ..+.+|||+|++.+. +++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~ 84 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLT------GTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAA 84 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHH------SSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHH
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eec
Confidence 456789999999999999999999987 3333334445443333444444 568889999998876 678
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc----ccCCHHHHHhHhCccccccceeEEEeee
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP----DAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.+|++++|||++++.+++.+..|+..+.......+.|+++++||+|+. .....++..+.++.. ..++|++||
T Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----~~~~~~e~S 160 (184)
T 3ihw_A 85 WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----KRCTYYETC 160 (184)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----TTCEEEEEB
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----CCCeEEEec
Confidence 899999999999999999999999988776544678999999999994 245666776666521 136899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 161 a~~~ 164 (184)
T 3ihw_A 161 ATYG 164 (184)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9986
No 23
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=7.1e-28 Score=163.59 Aligned_cols=144 Identities=25% Similarity=0.389 Sum_probs=112.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EEEEEecC--eEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
+.++|+++|++|+|||||++++.+ +.....+.++.... ...+...+ ..+.+|||||++.+...+..+++.+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 75 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVT------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc------CCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 568999999999999999999987 22333333444332 22333433 5599999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++++|+|++++.+++....++..+.......+.|+++++||+|+.+ ....++..+..+ ...++++++||++|
T Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 150 (167)
T 1kao_A 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSK 150 (167)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCC
Confidence 99999999999999999999998887765556899999999999875 344555555554 33458999999975
No 24
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=3.5e-28 Score=170.78 Aligned_cols=149 Identities=21% Similarity=0.221 Sum_probs=111.9
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHH
Q 030848 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEK 87 (170)
Q Consensus 11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~ 87 (170)
.+...+.+||+++|.+|+|||||++++.+ +.....+.++.+.... .++.....+.+|||||++.+...+..
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 91 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVE------GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYS 91 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHH------SCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGG
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHH
Confidence 34456789999999999999999999987 3333444455554432 22345678999999999999888889
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEee
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
+++.+|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ .....+..+..+ ...++++++
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~ 166 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-----SWGATFMES 166 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEC
T ss_pred HHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-----HhCCeEEEE
Confidence 9999999999999999999999999999998776667899999999999975 445566666655 445689999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 167 Sa~~~ 171 (201)
T 3oes_A 167 SAREN 171 (201)
T ss_dssp CTTCH
T ss_pred eCCCC
Confidence 99975
No 25
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-27 Score=165.49 Aligned_cols=146 Identities=23% Similarity=0.331 Sum_probs=115.6
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHH
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~ 88 (170)
.....+||+++|++|+|||||++++.+ +.......++.+..... +. .....+.+|||||++.+...+..+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 92 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQ------DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHH------CCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHH
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHh
Confidence 345679999999999999999999987 33333445555554332 22 245689999999999999999999
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeee
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
++.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+.++ ...++++++|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~S 166 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETS 166 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECB
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEe
Confidence 999999999999999999999988888876543 35789999999999975 455667777665 4457899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 167 a~~~ 170 (192)
T 2fg5_A 167 AKNA 170 (192)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9986
No 26
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=9.7e-28 Score=166.31 Aligned_cols=145 Identities=22% Similarity=0.332 Sum_probs=111.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
++.+||+++|++|+|||||++++.+ +.....+.++...... .+...+ ..+.+|||||++.+...+..+++.
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 75 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHH------SSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 4679999999999999999999987 2233333344433322 233333 458889999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+. ...++..+... ...++++++||++|
T Consensus 76 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g 150 (189)
T 4dsu_A 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR-----SYGIPFIETSAKTR 150 (189)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH-----HHTCCEEECCTTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence 9999999999999999999999988887665578999999999999764 45555555555 34468999999986
No 27
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=2.3e-27 Score=166.75 Aligned_cols=149 Identities=19% Similarity=0.270 Sum_probs=117.3
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHH
Q 030848 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEK 87 (170)
Q Consensus 11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~ 87 (170)
.....+.++|+++|++|+|||||++++.+ +.....+.++...... .+...+ ..+.+|||||++.+...+..
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 81 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDN 81 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHH
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHH
Confidence 34456789999999999999999999987 2233344455444432 333333 57999999999999999999
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEee
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
+++.+|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....+++.+.++ ...++++++
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~ 156 (206)
T 2bov_A 82 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVET 156 (206)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEE
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEE
Confidence 9999999999999999999999999988887765556899999999999976 455667766665 445689999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 157 Sa~~g 161 (206)
T 2bov_A 157 SAKTR 161 (206)
T ss_dssp CTTTC
T ss_pred eCCCC
Confidence 99986
No 28
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=2.2e-27 Score=165.02 Aligned_cols=145 Identities=21% Similarity=0.352 Sum_probs=116.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEec-----------CeEEEEEEcCCCCc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVS-----------NSKLVFWDLGGQPG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~~~i~D~~G~~~ 80 (170)
...++|+++|++|+|||||++++.+ +.......++.+.... .+... ...+.+|||||++.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD------GKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc------CCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 4579999999999999999999987 3333445566665543 23333 35899999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccc
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDER 158 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~ 158 (170)
+...+..+++.+|++|+|+|++++.+++.+..|+..+.......+.|+++++||+|+.+ ....+++.+.+. ..
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~ 157 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KY 157 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HH
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----Hc
Confidence 99999999999999999999999999999888888887665546899999999999976 445566666665 33
Q ss_pred eeEEEeeeccCC
Q 030848 159 VCMFEAVSGYDG 170 (170)
Q Consensus 159 ~~~~~~~Sa~~g 170 (170)
.++++++||++|
T Consensus 158 ~~~~~~~Sa~~~ 169 (195)
T 3bc1_A 158 GIPYFETSAANG 169 (195)
T ss_dssp TCCEEECCTTTC
T ss_pred CCCEEEEECCCC
Confidence 468999999986
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=2.6e-27 Score=163.17 Aligned_cols=145 Identities=24% Similarity=0.360 Sum_probs=113.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
....+||+++|++|+|||||++++.+ +.......++++.... .+... ...+.+||+||++.+...+..++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVK------DQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHH------CCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred CccceEEEEECcCCCCHHHHHHHHHc------CCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 45679999999999999999999987 2233333344443322 23333 46899999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+.+|++|+|+|++++.+++....|+..+..... ++.|+++++||+|+.+ ....++..+.++ ...++++++||
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 156 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSA 156 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEEC
Confidence 999999999999999999999988888876533 5889999999999965 345666666665 34568999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 157 ~~g 159 (181)
T 2efe_B 157 KTA 159 (181)
T ss_dssp SSC
T ss_pred CCC
Confidence 986
No 30
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=2.8e-27 Score=162.84 Aligned_cols=146 Identities=18% Similarity=0.282 Sum_probs=115.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
....++|+++|++|+|||||++++.+ ......+.++++.... .+...+ ..+.+|||||++++...+..+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~ 79 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQ------SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMR 79 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHH------SSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh------CcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh
Confidence 45679999999999999999999987 3333445555555443 233443 57899999999999989999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+.+ ....++..+... ...++++++||+
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 154 (181)
T 2fn4_A 80 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-----SHHVAYFEASAK 154 (181)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECBTT
T ss_pred hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCC
Confidence 9999999999999999999999988886655556889999999999976 344555555554 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 155 ~~ 156 (181)
T 2fn4_A 155 LR 156 (181)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 31
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=2e-27 Score=164.40 Aligned_cols=146 Identities=19% Similarity=0.296 Sum_probs=115.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
..+.+||+++|++|+|||||++++.+ ......+.++...... .+...+ ..+.+||+||++.+...+..+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 88 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR 88 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhh------CCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhc
Confidence 45779999999999999999999987 2233344445444432 233333 57999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+ ....++..+.++ ...++++++||+
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 163 (187)
T 2a9k_A 89 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAK 163 (187)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCC
Confidence 9999999999999999999999988887765556899999999999976 455667776665 445689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 164 ~~ 165 (187)
T 2a9k_A 164 TR 165 (187)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=1.2e-27 Score=166.48 Aligned_cols=147 Identities=27% Similarity=0.451 Sum_probs=113.7
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcch-hhHHH
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLR-SIWEK 87 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~-~~~~~ 87 (170)
..++.+||+++|++|+|||||++++.+ +.......++.+... ..+...+ ..+.+|||||++.+. ..+..
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 89 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCA------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 89 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHH------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHH
Confidence 345789999999999999999999987 233333344444332 3344443 689999999999888 78889
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEee
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
+++.+|++|+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....++..+..+ ...++++++
T Consensus 90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~ 164 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFET 164 (189)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEEC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEE
Confidence 9999999999999999999999999988887765556899999999999976 345566655555 344689999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 165 Sa~~~ 169 (189)
T 1z06_A 165 SAKNP 169 (189)
T ss_dssp CSSSG
T ss_pred eCCcC
Confidence 99975
No 33
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=2e-27 Score=161.88 Aligned_cols=143 Identities=23% Similarity=0.403 Sum_probs=112.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
+.++|+++|++|+|||||++++.+ +.......++.+.... .+.. ....+.+||+||++.+...+..+++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 75 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVS------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhcc
Confidence 468999999999999999999987 3333344455554432 3333 34579999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-----CCHHHHHhHhCccccccceeEEEeee
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-----VSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
+|++++|+|++++.+++....|+..+..... ++.|+++++||+|+.+. ...++..+..+ ...++++++|
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~S 149 (170)
T 1ek0_A 76 AQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-----EKGLLFFETS 149 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-----HHTCEEEECC
T ss_pred CcEEEEEEecCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCccccccccCCCHHHHHHHHH-----HcCCEEEEEe
Confidence 9999999999999999999888888876542 67899999999999753 34445555544 3456899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 150 a~~~ 153 (170)
T 1ek0_A 150 AKTG 153 (170)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9986
No 34
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=166.74 Aligned_cols=144 Identities=26% Similarity=0.401 Sum_probs=110.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......+|++... ..+...+ ..+.+|||||++.+...+..+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 100 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR 100 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH------SCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence 4568999999999999999999987 333334445555333 3444444 68999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCcccccccee-EEEeeec
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVC-MFEAVSG 167 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 167 (170)
.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+.++ ...+ +++++||
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA 174 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSA 174 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBT
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeC
Confidence 9999999999999999999888888876643 36789999999999976 456667776665 3345 8999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 175 ~~g 177 (201)
T 2hup_A 175 KDS 177 (201)
T ss_dssp TTT
T ss_pred CCC
Confidence 986
No 35
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=9.2e-28 Score=163.33 Aligned_cols=142 Identities=23% Similarity=0.253 Sum_probs=93.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee---EEEEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN---IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 93 (170)
.+||+++|++|+|||||++++.+.... ...++.+.. ...++.....+.+||+||++.+...+..+++.+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 74 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-------PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGD 74 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------------CEEEEEEEETTEEEEEEEEECC---------------CC
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-------CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCC
Confidence 589999999999999999999652111 111222222 1123344567999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++.+++....|+..+.......+.|+++++||+|+.+ ....++..+... ...++++++||++|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 148 (166)
T 3q72_A 75 AYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALH 148 (166)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCC
Confidence 9999999999999999999999998766557899999999999975 445566655555 44578999999986
No 36
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.1e-27 Score=167.48 Aligned_cols=149 Identities=20% Similarity=0.233 Sum_probs=112.9
Q ss_pred hhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EEe--cCeEEEEEEcCCCCcchhhHH
Q 030848 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWE 86 (170)
Q Consensus 10 ~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~ 86 (170)
..+..++.+||+++|++|+|||||++++.+ +.....+.++.+..... +.. ....+.+||+||++. ...+.
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~ 93 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLT------KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQRE 93 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHH
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchh
Confidence 334456789999999999999999999987 33333444555544332 333 346799999999888 77788
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEe
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
.+++.+|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....++..+..+ ...+++++
T Consensus 94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~ 168 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYE 168 (196)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEE
T ss_pred hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEE
Confidence 89999999999999999999999988888887654446889999999999976 455666666665 34578999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 169 ~Sa~~g 174 (196)
T 2atv_A 169 CSACTG 174 (196)
T ss_dssp CCTTTC
T ss_pred ECCCcC
Confidence 999986
No 37
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.1e-27 Score=165.46 Aligned_cols=145 Identities=23% Similarity=0.389 Sum_probs=115.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
.+.++|+++|++|+|||||++++.+ ........++.+.... .+.. ....+.+|||||++.+...+..+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTD------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR 86 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc------CCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence 3568999999999999999999987 3333344455554432 2333 3467999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
.+|++|+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....++..+.++ ...++++++||++
T Consensus 87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 161 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKT 161 (195)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCC
Confidence 9999999999999999999999988887765556899999999999965 345566666665 3456899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 162 ~ 162 (195)
T 1x3s_A 162 C 162 (195)
T ss_dssp C
T ss_pred C
Confidence 6
No 38
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=3e-27 Score=162.41 Aligned_cols=145 Identities=25% Similarity=0.382 Sum_probs=113.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEe--cCeEEEEEEcCCCCcchhhHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEV--SNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
....++|+++|++|+|||||++++.+ +.......++.+... ..+.. ....+.+|||||++.+...+..++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 85 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY 85 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHh
Confidence 34679999999999999999999987 222333344444332 23333 346799999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+.+|++++|+|++++.+++....|+..+..... .+.|+++++||+|+.+ ....++..+.++ ...++++++||
T Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 159 (179)
T 1z0f_A 86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASA 159 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCT
T ss_pred ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeC
Confidence 999999999999999999988888887765432 5789999999999975 445666766665 34568999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 160 ~~~ 162 (179)
T 1z0f_A 160 KTG 162 (179)
T ss_dssp TTC
T ss_pred CCC
Confidence 986
No 39
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=1e-27 Score=170.16 Aligned_cols=144 Identities=22% Similarity=0.343 Sum_probs=113.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
....+||+++|++|+|||||++++.+ +.....+.+|++.... .++.....+.+|||+|++.+...+..+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 97 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 97 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC
Confidence 34679999999999999999999987 4444555566666543 22334568999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHH-HHHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCcccc
Q 030848 91 EAHAVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKL 155 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~ 155 (170)
.+|++|+|||++++.+++. ...|+..+.... ++.|+++|+||+|+.+ ....++..+.++
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 171 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK---- 171 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH----
T ss_pred CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH----
Confidence 9999999999999999988 577777776543 5899999999999975 356666666666
Q ss_pred cccee-EEEeeeccCC
Q 030848 156 DERVC-MFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~~-~~~~~Sa~~g 170 (170)
...+ +|++|||++|
T Consensus 172 -~~~~~~~~e~SA~~g 186 (214)
T 3q3j_B 172 -QLGAEIYLEGSAFTS 186 (214)
T ss_dssp -HHTCSEEEECCTTTC
T ss_pred -HcCCCEEEEeccCCC
Confidence 4455 8999999986
No 40
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=1.1e-27 Score=164.58 Aligned_cols=146 Identities=24% Similarity=0.356 Sum_probs=112.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC---eEEEEEEcCCCCcchhhHHHH
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN---SKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~ 88 (170)
..+.++|+++|++|+|||||++++.+ +.....+.++++.. ...+...+ ..+.+|||||++.+...+..+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 76 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQ------ETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKY 76 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHG------GGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHH
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHh------CcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHH
Confidence 45679999999999999999999986 22223444555533 33455544 789999999999999999999
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEe
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
++.+|++++|+|++++.+++.+..|+..+..... ....|+++++||+|+.+ ....++..+.++ ...+++++
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~ 151 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHF 151 (178)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEE
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEE
Confidence 9999999999999999999888888777755321 12344899999999976 345566666655 34568999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 152 ~Sa~~~ 157 (178)
T 2hxs_A 152 VSAKTG 157 (178)
T ss_dssp ECTTTC
T ss_pred EeCCCC
Confidence 999986
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=5.5e-27 Score=163.57 Aligned_cols=144 Identities=26% Similarity=0.435 Sum_probs=113.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......++.+.... .+...+ ..+.+|||||++.+...+..+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 87 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 87 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence 4568999999999999999999987 3333444455554433 344444 67999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+. ....+..+... ...++++++||+
T Consensus 88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 161 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGIPFLETSAK 161 (196)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEEECTT
T ss_pred hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEeCC
Confidence 99999999999999999999888888765433 57899999999999763 44455555555 344689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 162 ~g 163 (196)
T 3tkl_A 162 NA 163 (196)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 42
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=1.5e-27 Score=162.32 Aligned_cols=143 Identities=24% Similarity=0.408 Sum_probs=112.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.....+.++.+.... .+... ...+.+|||||++.+...+..+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 76 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYR 76 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhc
Confidence 4579999999999999999999987 3333344455443332 33333 458999999999998888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++....|+..+.... .+.|+++++||+|+.+ ....++..+.++ ...++++++||+
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 149 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVK 149 (168)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecC
Confidence 9999999999999999998888888876543 5789999999999976 445666666655 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 150 ~~ 151 (168)
T 1z2a_A 150 ED 151 (168)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 43
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=8.9e-27 Score=183.89 Aligned_cols=149 Identities=36% Similarity=0.720 Sum_probs=130.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
+..++|+++|.+|+|||||++++.+ +. .....+|.+.....+++.+..+.+|||||++.+...+..+++.+|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~------~~-~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 392 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKL------GQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 392 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH------SS-CCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhc------CC-CCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCE
Confidence 4679999999999999999999987 22 2234568888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|+|||++++.+++....++..+.......+.|+++|+||+|+.+.....++.+.+.........+++++|||++|
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCC
Confidence 9999999999999999999999987666578999999999999988888888888776666667889999999987
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=5.8e-27 Score=162.22 Aligned_cols=144 Identities=27% Similarity=0.397 Sum_probs=113.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ ........++.+... ..+...+ ..+.+|||||++.+...+..+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIE------KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 4569999999999999999999987 333334445555433 2344444 68999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+ .....+..+.++ ...++++++||+
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 155 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSAL 155 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCC
Confidence 99999999999999999988888877765433 6789999999999975 455566666665 445789999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 156 ~~ 157 (186)
T 2bme_A 156 TG 157 (186)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 45
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=1.8e-27 Score=162.34 Aligned_cols=145 Identities=19% Similarity=0.261 Sum_probs=103.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec--CeEEEEEEcCCCCcchh-hHHHHhhccC
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLVFWDLGGQPGLRS-IWEKYYEEAH 93 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~~ 93 (170)
.+||+++|++|+|||||++++.+...... .....+.......+... ...+.+||+||++.+.. .+..+++.+|
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d 77 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA----HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGD 77 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCS
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc----ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCC
Confidence 57999999999999999999975211111 11112222223333343 46788999999988765 6677789999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
++++|+|++++.+++....|+..+.......+.|+++++||+|+.+ ....++..+..+ ...++++++||++|
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 151 (169)
T 3q85_A 78 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALH 151 (169)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCcEEEecCccC
Confidence 9999999999999999999999988766556899999999999974 556667666666 44568999999986
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=5.6e-27 Score=159.79 Aligned_cols=144 Identities=23% Similarity=0.358 Sum_probs=112.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
.+.++|+++|++|+|||||++++.+ ........++.+.... .+... ...+.+|||||.+.+...+..+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~ 77 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVE------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR 77 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCc
Confidence 4579999999999999999999987 3333344455554432 23333 467999999999999998999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++....|+..+... ..+..|+++++||+|+.+ ....++..+..+ ...++++++||+
T Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 151 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAK 151 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence 999999999999999999888888777653 236789999999999976 344555555554 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 152 ~~ 153 (170)
T 1z0j_A 152 NA 153 (170)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=9.6e-27 Score=162.93 Aligned_cols=143 Identities=22% Similarity=0.394 Sum_probs=113.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC------------------------
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN------------------------ 67 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------------------ 67 (170)
.+..++|+++|++|+|||||++++.+ ......+.++++.... .+...+
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTK------DTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNV 77 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSCEEEEEEEETTC------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh------CcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccc
Confidence 45679999999999999999999987 2233344455554433 223222
Q ss_pred ---------------eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848 68 ---------------SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132 (170)
Q Consensus 68 ---------------~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~ 132 (170)
..+.+|||||++.+...+..+++.+|++|+|+|++++.+++....|+..+.... ..|+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~ 154 (208)
T 3clv_A 78 IITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVA 154 (208)
T ss_dssp -------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEE
T ss_pred ccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEE
Confidence 789999999999999999999999999999999999999999888888886643 38999999
Q ss_pred eCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 133 NKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 133 nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
||+|+.. ....+++.+.++ ...++++++||++|
T Consensus 155 NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 188 (208)
T 3clv_A 155 NKIDKNKFQVDILEVQKYAQ-----DNNLLFIQTSAKTG 188 (208)
T ss_dssp ECTTCC-CCSCHHHHHHHHH-----HTTCEEEEECTTTC
T ss_pred ECCCcccccCCHHHHHHHHH-----HcCCcEEEEecCCC
Confidence 9999433 556777777776 45569999999986
No 48
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=1.3e-27 Score=166.78 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=112.4
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC----CCcccCCcceeEEE-----EEecCeEEEEEEcCCCCcchh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----PDRIVPTVGLNIGR-----IEVSNSKLVFWDLGGQPGLRS 83 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~i~D~~G~~~~~~ 83 (170)
.....+||+++|++|+|||||++.+.+......... .....+|.+..... ++.....+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 345789999999999999999988765322111100 01123444444332 222346799999999999999
Q ss_pred hHHHHhhccCEEEEEEeCC------CcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccc
Q 030848 84 IWEKYYEEAHAVVFVIDAA------CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDE 157 (170)
Q Consensus 84 ~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~ 157 (170)
.+..+++.+|++|+|+|++ +..+++.+..|+..+. ....+.|+++|+||+|+.+....+++.+.++ .
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~ 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD-----P 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----T
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH-----h
Confidence 9999999999999999999 4456666666666652 2336899999999999999888999998888 4
Q ss_pred cee-EEEeeeccCC
Q 030848 158 RVC-MFEAVSGYDG 170 (170)
Q Consensus 158 ~~~-~~~~~Sa~~g 170 (170)
..+ +++++||++|
T Consensus 163 ~~~~~~~~~Sa~~~ 176 (198)
T 3t1o_A 163 EGKFPVLEAVATEG 176 (198)
T ss_dssp TCCSCEEECBGGGT
T ss_pred cCCceEEEEecCCC
Confidence 455 8999999986
No 49
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=162.16 Aligned_cols=144 Identities=22% Similarity=0.372 Sum_probs=113.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...++|+++|++|+|||||++++.+ ........++.+.... .+.. ....+.+|||||++.+...+..+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTR------NEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHH------SCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence 4568999999999999999999987 2333334455554433 2222 4567999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+.+. ...++++++||+
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 170 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSAL 170 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence 9999999999999999988888888886643 36789999999999976 345566666655 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 171 ~~ 172 (193)
T 2oil_A 171 DS 172 (193)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=166.32 Aligned_cols=147 Identities=22% Similarity=0.429 Sum_probs=103.8
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEe--cCeEEEEEEcCCCCcchhhHHH
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEV--SNSKLVFWDLGGQPGLRSIWEK 87 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~ 87 (170)
...+..+||+++|++|+|||||++++.+ +.......++.+... ..+.. ....+.+|||||++.+...+..
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 96 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCK------NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKS 96 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHH------CCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHH
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHh------CCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHH
Confidence 3445679999999999999999999987 222233344444332 23333 3467999999999999999999
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--------cCCHHHHHhHhCccccccce
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--------AVSADELARYLDLKKLDERV 159 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~ 159 (170)
+++.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+.+. ...
T Consensus 97 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-----~~~ 170 (199)
T 2p5s_A 97 YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-----TYG 170 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH-----HHT
T ss_pred HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHH-----HcC
Confidence 9999999999999999999998888877775432 25789999999999962 334455555554 345
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++++++||++|
T Consensus 171 ~~~~~~SA~~g 181 (199)
T 2p5s_A 171 ALFCETSAKDG 181 (199)
T ss_dssp CEEEECCTTTC
T ss_pred CeEEEeeCCCC
Confidence 68999999986
No 51
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=5e-27 Score=160.84 Aligned_cols=146 Identities=21% Similarity=0.201 Sum_probs=100.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec--CeEEEEEEcCCCCc--chhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLVFWDLGGQPG--LRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~--~~~~~~~~~~ 90 (170)
.+.+||+++|++|+|||||++++.+... ..... . +........+... ...+.+|||||++. +......+++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~--~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 76 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQE--RDLHE-Q--LGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQ 76 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-------CC-C--SSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTT
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCC--ccccC-c--cccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcc
Confidence 4679999999999999999999976211 11111 1 1111122233343 35789999999887 4556677889
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+ ....++..+... ...++++++||+
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 151 (175)
T 2nzj_A 77 GGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKFIETSAT 151 (175)
T ss_dssp SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEEEECBTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeEEEEecC
Confidence 9999999999999999999999888887664446899999999999976 345555555544 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 152 ~g 153 (175)
T 2nzj_A 152 LQ 153 (175)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 52
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.6e-27 Score=166.68 Aligned_cols=144 Identities=25% Similarity=0.451 Sum_probs=113.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......++++.... .+...+ ..+.+|||||++.+...+..+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR 97 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred ccceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3568999999999999999999987 3333444556554433 344443 57999999999999998999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+..+ ...++++++||+
T Consensus 98 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 171 (201)
T 2ew1_A 98 SANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAK 171 (201)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence 9999999999999999998888888776543 25789999999999975 445566665554 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 172 ~g 173 (201)
T 2ew1_A 172 ES 173 (201)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-26 Score=162.54 Aligned_cols=144 Identities=26% Similarity=0.367 Sum_probs=112.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ ......+.++.+.... .+.. ....+.+|||||++.+...+..+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYR 79 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT------CCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhc
Confidence 3568999999999999999999987 3333344455554433 2333 3468999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+..+ ...++++++||+
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 153 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAK 153 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECC
Confidence 9999999999999999998888888876543 35789999999999976 345556666555 334689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 154 ~~ 155 (203)
T 1zbd_A 154 DN 155 (203)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 54
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=8.9e-27 Score=160.02 Aligned_cols=144 Identities=25% Similarity=0.435 Sum_probs=113.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
.+.++|+++|++|+|||||++++.+ +.......++.+... ..+...+ ..+.+|||||++.+...+..+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~ 85 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 85 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhc
Confidence 4569999999999999999999986 333334445555433 2333443 57999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++....|+..+..... .+.|+++|+||+|+.+ ....++..+.+. ...++++++||+
T Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 159 (179)
T 2y8e_A 86 DSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAK 159 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCC
Confidence 99999999999999999988888888765432 5789999999999975 344566666555 445789999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 160 ~~ 161 (179)
T 2y8e_A 160 AG 161 (179)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 55
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=1.5e-27 Score=162.73 Aligned_cols=144 Identities=23% Similarity=0.346 Sum_probs=106.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......++.+.... .+.. ....+.+|||||++.+...+..+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 77 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCE------NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR 77 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH------CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc------CCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc
Confidence 4679999999999999999999987 3333344455554433 3333 3457999999999998888888899
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+ ....++..+.++ ...++++++||+
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 151 (170)
T 1z08_A 78 DSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAK 151 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCC
Confidence 9999999999999999999888887765432 25789999999999976 455666666665 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 152 ~~ 153 (170)
T 1z08_A 152 QN 153 (170)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 56
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=9.6e-27 Score=157.69 Aligned_cols=144 Identities=20% Similarity=0.305 Sum_probs=111.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
+.++|+++|++|+|||||++++.+ +.......++...... .+.. ....+.+||+||++.+...+..+++.+
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 75 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQ------NHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHh------CcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccC
Confidence 468999999999999999999987 2222333344433322 2333 345689999999999998899999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+ ....++..+..+ ...++++++||++|
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 149 (166)
T 2ce2_X 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTR 149 (166)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCC
Confidence 99999999999999998888888877654445799999999999976 445556665555 34468999999986
No 57
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.95 E-value=2.7e-27 Score=165.24 Aligned_cols=144 Identities=21% Similarity=0.321 Sum_probs=111.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
.+..+||+++|++|+|||||++++.+ +.....+.++.+..... +.. ....+.+|||||++.+...+..+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSK------GEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhc------CCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence 45679999999999999999999987 33444555666555442 223 3456799999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccceeE-EEe
Q 030848 91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCM-FEA 164 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~ 164 (170)
.+|++++|+|++++.+++.+ ..|...+... .++.|+++|+||+|+.+ ....++..+.++ ...++ +++
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 166 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIE 166 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEE
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEE
Confidence 99999999999999999887 4555555433 25789999999999974 355666666666 33344 999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 167 ~Sa~~~ 172 (194)
T 3reg_A 167 ASSVAK 172 (194)
T ss_dssp CBTTTT
T ss_pred eecCCC
Confidence 999986
No 58
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=9.3e-28 Score=165.91 Aligned_cols=144 Identities=24% Similarity=0.397 Sum_probs=89.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...++|+++|++|+|||||++++.+ +.......++++.... .+...+ ..+.+|||||++.+...+..+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSE------DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 79 (183)
T ss_dssp SEEEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHh
Confidence 4578999999999999999999976 3333445566654433 344444 78999999999998888888899
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+..... ++.|+++|+||+|+.+ ....++..+.++ ...++++++||+
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 153 (183)
T 2fu5_C 80 GAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAK 153 (183)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC-
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCC
Confidence 99999999999999999999888888765432 5789999999999976 345666666665 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 154 ~~ 155 (183)
T 2fu5_C 154 AN 155 (183)
T ss_dssp --
T ss_pred CC
Confidence 86
No 59
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=2.6e-27 Score=168.07 Aligned_cols=145 Identities=23% Similarity=0.402 Sum_probs=114.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec------------CeEEEEEEcCCCCc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS------------NSKLVFWDLGGQPG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~~~i~D~~G~~~ 80 (170)
...+||+++|++|+|||||++++.+ ......+.++.+.... .+... ...+.+|||||++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 96 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER 96 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC------SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc------CCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh
Confidence 4568999999999999999999986 3334455566555433 22222 56799999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccc
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDER 158 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~ 158 (170)
+...+..+++.+|++|+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....++..+.++ ..
T Consensus 97 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~ 171 (217)
T 2f7s_A 97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KY 171 (217)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HT
T ss_pred HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HC
Confidence 99999999999999999999999999998888887776554446799999999999976 345566666665 33
Q ss_pred eeEEEeeeccCC
Q 030848 159 VCMFEAVSGYDG 170 (170)
Q Consensus 159 ~~~~~~~Sa~~g 170 (170)
.++++++||++|
T Consensus 172 ~~~~~~~Sa~~g 183 (217)
T 2f7s_A 172 GIPYFETSAATG 183 (217)
T ss_dssp TCCEEEEBTTTT
T ss_pred CCcEEEEECCCC
Confidence 467999999986
No 60
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=164.38 Aligned_cols=146 Identities=25% Similarity=0.263 Sum_probs=109.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
.....+||+++|++|+|||||++++.+ +.....+.+|++..+. ... .....+.+|||||++.+... ..++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~ 89 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLT------KRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYL 89 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHH
Confidence 346779999999999999999999987 3333455566655432 222 33467899999999887764 5688
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEee
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
+.+|++++|||++++.+++.+..|+..+..... ..+.|+++++||+|+.+ ....++..+.++ ...++++++
T Consensus 90 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~ 164 (187)
T 3c5c_A 90 NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEV 164 (187)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEC
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEE
Confidence 999999999999999999999988888865421 15789999999999975 456667777666 445689999
Q ss_pred ec-cCC
Q 030848 166 SG-YDG 170 (170)
Q Consensus 166 Sa-~~g 170 (170)
|| ++|
T Consensus 165 Sa~~~g 170 (187)
T 3c5c_A 165 SACLDF 170 (187)
T ss_dssp CSSSCS
T ss_pred eecCcc
Confidence 99 775
No 61
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=3.6e-27 Score=164.33 Aligned_cols=144 Identities=24% Similarity=0.367 Sum_probs=110.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS--NSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......++.+.. ...+... ...+.+|||||++.+...+..+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH------SCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 4568999999999999999999987 22223333444433 2234443 368999999999999888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ....++..+.++ ...++++++||+
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAK 166 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence 99999999999999999998888888865432 5789999999999975 455666666665 445689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 167 ~~ 168 (191)
T 2a5j_A 167 TA 168 (191)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 62
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.6e-27 Score=166.13 Aligned_cols=144 Identities=22% Similarity=0.346 Sum_probs=113.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--E--EEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--R--IEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......++.+.... . .+.....+.+|||||++.+...+..+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYAD------DTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR 94 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHH------HTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhc------CCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc
Confidence 3568999999999999999999987 2223333344433322 2 2335678999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+..+ ...++++++||+
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 168 (191)
T 3dz8_A 95 GAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAE-----QLGFDFFEASAK 168 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEECC
Confidence 9999999999999999999888888876643 36789999999999975 355566666655 445689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 169 ~~ 170 (191)
T 3dz8_A 169 EN 170 (191)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 63
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=5.5e-27 Score=164.21 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=108.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe--cCeEEEEEEcCCCCcchh-hHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SNSKLVFWDLGGQPGLRS-IWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~ 90 (170)
....++|+++|++|+|||||++++.+...... ..+ ..+.......+.. ....+.+|||+|++.+.. ++..+++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-HEP---ENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGG-GTT---TSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCcc-CCC---CcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 34679999999999999999999964211111 001 1111222222333 346789999999988765 7778889
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|||++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....++..+.++ ...++++++||+
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAA 170 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEEEBTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-----HhCCEEEEEcCC
Confidence 9999999999999999999999998887654445799999999999975 355666666655 334689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 171 ~~ 172 (195)
T 3cbq_A 171 LH 172 (195)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 64
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=3.2e-27 Score=160.98 Aligned_cols=143 Identities=25% Similarity=0.423 Sum_probs=107.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEec--CeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+||+++|++|+|||||++++.+ +.......++.+... ..+... ...+.+||+||++.+...+..+++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 75 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH------CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred CceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhcc
Confidence 468999999999999999999987 333334444544333 233333 3579999999999988888889999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+ ....++..+..+ ...++++++||++|
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 149 (170)
T 1g16_A 76 AMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKND 149 (170)
T ss_dssp EEEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCC
Confidence 9999999999999999888888887766432 5789999999999965 345555555554 33468999999986
No 65
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.9e-27 Score=161.60 Aligned_cols=143 Identities=24% Similarity=0.447 Sum_probs=112.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......++.+... ..+...+ ..+.+|||||++.+...+..+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 80 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYR 80 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS------CC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhc
Confidence 4679999999999999999999976 333334444554433 3444555 67999999999998888888999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+ .....+..+... ...++++++||+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 81 GTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAK 153 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECC
Confidence 9999999999999999999988888886643 5789999999999976 345556665555 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 154 ~~ 155 (181)
T 3tw8_B 154 EN 155 (181)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 66
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.9e-27 Score=161.28 Aligned_cols=145 Identities=27% Similarity=0.468 Sum_probs=105.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CCcccCCcceeEEE--EEec--CeEEEEEEcCCCCcchhhHHHH
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~ 88 (170)
....++|+++|++|+|||||++++.+. .. .....++++..... +... ...+.+|||||++.+...+..+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 80 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDG------AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAY 80 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS------CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CC
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhC------CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHH
Confidence 456799999999999999999999872 22 12344555555432 2333 3579999999999999888899
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeee
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
++.+|++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+ ....++..+..+ ...++++++|
T Consensus 81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S 154 (180)
T 2g6b_A 81 YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETS 154 (180)
T ss_dssp GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECC
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEe
Confidence 9999999999999999999988888888766433 6789999999999975 335556655555 3446899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 155 a~~~ 158 (180)
T 2g6b_A 155 AKTG 158 (180)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9986
No 67
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=1.1e-26 Score=161.47 Aligned_cols=144 Identities=26% Similarity=0.383 Sum_probs=111.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......++.+.... .+.. ....+.+|||||++.+...+..+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 3468999999999999999999987 2333334445444432 2332 3468999999999999888888999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+..+ ...++++++||+
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 167 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAK 167 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECC
Confidence 9999999999999999998888888776543 35789999999999976 344556666555 334689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 168 ~g 169 (189)
T 2gf9_A 168 EN 169 (189)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=1.6e-26 Score=158.70 Aligned_cols=147 Identities=21% Similarity=0.387 Sum_probs=112.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
....++|+++|++|+|||||++++.+ +.......++.+.... .+...+ ..+.+|||||++.+...+..++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 77 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY 77 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHH------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGG
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHH
Confidence 34678999999999999999999987 3333445556655433 333444 5899999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
+.+|++++|+|++++.+++.+..|+..+..... ..+.|+++++||+|+.+ ....++..+.++. ...++++++
T Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~ 153 (177)
T 1wms_A 78 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFET 153 (177)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEEC
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEE
Confidence 999999999999999999888888877754322 25789999999999974 4556666665541 235679999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 154 Sa~~~ 158 (177)
T 1wms_A 154 SAKDA 158 (177)
T ss_dssp CTTTC
T ss_pred eCCCC
Confidence 99986
No 69
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=9.8e-27 Score=158.75 Aligned_cols=144 Identities=21% Similarity=0.329 Sum_probs=108.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EE--ecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 92 (170)
+.++|+++|++|+|||||++++.+ +.......++.+..... .. .....+.+|||||++.+...+..+++.+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 75 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK------GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG 75 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT------CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccC
Confidence 468999999999999999999987 33333344444444332 22 2345799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 93 HAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
|++++|+|++++.+++....++..+.... ..++.|+++++||+|+.+. ....+..+... ...++++++||++
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~ 150 (172)
T 2erx_A 76 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKCAFMETSAKL 150 (172)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECBTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEecCCC
Confidence 99999999999999988888877765432 2257899999999999753 44445555444 3456899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 151 ~ 151 (172)
T 2erx_A 151 N 151 (172)
T ss_dssp T
T ss_pred C
Confidence 6
No 70
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.95 E-value=3.3e-26 Score=157.46 Aligned_cols=142 Identities=17% Similarity=0.249 Sum_probs=104.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHHh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
...+.+||+++|++|+|||||++++.+ +.... +.+|++.... .+... ...+.+|||||++. ..++
T Consensus 3 ~~~~~~ki~~vG~~~vGKTsli~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~ 70 (178)
T 2iwr_A 3 RSIPELRLGVLGDARSGKSSLIHRFLT------GSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFS 70 (178)
T ss_dssp CCCCEEEEEEECCGGGCHHHHHHHHHH------SCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHh------CCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHH
Confidence 346789999999999999999999987 22222 3445444322 23333 36789999999887 4577
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccceeEEE
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
+.+|++|+|+|++++.+++.+..|+..+... ...++.|+++++||+|+.+ ....++..+.++. ...++++
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~ 146 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYY 146 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEE
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEE
Confidence 8999999999999999999988865444322 2235789999999999942 4556666665541 1257899
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||++|
T Consensus 147 ~~Sa~~~ 153 (178)
T 2iwr_A 147 ETXATYG 153 (178)
T ss_dssp EEBTTTT
T ss_pred EEecccc
Confidence 9999986
No 71
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=8e-27 Score=164.28 Aligned_cols=144 Identities=27% Similarity=0.452 Sum_probs=113.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...++|+++|++|+|||||++++.+ +.....+.++++.... .+... ...+.+|||||++.+...+..+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence 4568999999999999999999987 3333344455554433 33343 358999999999999888888999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+... ...++++++||+
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 153 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSAL 153 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCC
Confidence 9999999999999999999988888776543 25789999999999976 345566666555 344689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 154 ~g 155 (206)
T 2bcg_Y 154 DS 155 (206)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=1.1e-26 Score=161.46 Aligned_cols=148 Identities=20% Similarity=0.298 Sum_probs=102.6
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHH
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~ 88 (170)
....+.++|+++|.+|+|||||++++.+ +.....+.++...... .+... ...+.+||+||++.+...+..+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 89 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQY 89 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHc------CCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHh
Confidence 3345779999999999999999999987 2222333344433322 23333 3569999999999998888999
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeec
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
++.+|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+.+ ....++..+.++ ...++++++||
T Consensus 90 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 164 (190)
T 3con_A 90 MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSA 164 (190)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCT
T ss_pred hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeC
Confidence 999999999999999999998888888876654445789999999999976 445666666665 34468999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 165 ~~~ 167 (190)
T 3con_A 165 KTR 167 (190)
T ss_dssp TTC
T ss_pred CCC
Confidence 986
No 73
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=161.61 Aligned_cols=145 Identities=24% Similarity=0.404 Sum_probs=108.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|.+|+|||||++++.+ +.......++.+... ..+...+ ..+.+|||||++.+...+..+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD------DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc------CCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 4568999999999999999999976 222233344554433 3344433 57999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+..+. ...++++++||+
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~ 172 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAK 172 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCC
Confidence 9999999999999999998888877665432 35789999999999976 3445555555541 135689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 173 ~g 174 (192)
T 2il1_A 173 DN 174 (192)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=9.1e-27 Score=165.34 Aligned_cols=145 Identities=19% Similarity=0.287 Sum_probs=112.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec---C--eEEEEEEcCCCCcchhhHHHH
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---N--SKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~i~D~~G~~~~~~~~~~~ 88 (170)
....+||+++|.+|+|||||++++.+ +.....+.++.+......... + ..+.+|||||++.+...+..+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 81 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLD------GRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVY 81 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTT------CSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHH
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHH
Confidence 45779999999999999999999976 333445556666555443331 1 679999999999888888899
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeee
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
++.+|++|+|+|++++.+++....|+..+..... .+.|+++|+||+|+.+ ....++..+.+. ...++++++|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S 155 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVMEVLK-----GKNYEYFEIS 155 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHHHHTT-----TCCCEEEEEB
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCcEEEEe
Confidence 9999999999999999999988888887765432 4689999999999976 345556656665 5567899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 156 a~~g 159 (218)
T 4djt_A 156 AKTA 159 (218)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 9986
No 75
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=8.5e-27 Score=161.53 Aligned_cols=143 Identities=23% Similarity=0.346 Sum_probs=106.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
....+||+++|++|+|||||++++.+ +.....+.++...... .+. .....+.+|||||++.+...+..+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 77 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 77 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcC
Confidence 45679999999999999999999987 3333344455544432 222 23467999999999999888888999
Q ss_pred ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCcccc
Q 030848 91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKL 155 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~ 155 (170)
.+|++|+|+|++++.+++.+ ..|...+.... ++.|+++++||+|+.+ ....++..+.++..
T Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 153 (184)
T 1m7b_A 78 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI-- 153 (184)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc--
Confidence 99999999999999999888 56666665432 5789999999999974 24455555555411
Q ss_pred ccceeEEEeeecc
Q 030848 156 DERVCMFEAVSGY 168 (170)
Q Consensus 156 ~~~~~~~~~~Sa~ 168 (170)
..+++++|||+
T Consensus 154 --~~~~~~e~Sa~ 164 (184)
T 1m7b_A 154 --GAATYIECSAL 164 (184)
T ss_dssp --TCSEEEECBTT
T ss_pred --CCcEEEEeeec
Confidence 13689999998
No 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.7e-26 Score=161.47 Aligned_cols=146 Identities=19% Similarity=0.331 Sum_probs=111.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-E--EecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-I--EVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
....++|+++|++|+|||||++++.+ +.....+.++.+..... + +.....+.+|||||++.+...+..+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 78 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK------GTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSIS 78 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH------SCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc------CCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhc
Confidence 45679999999999999999999987 33333444555444332 2 223457999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++++|+|++++.+++....++..+..... ..+.|+++|+||+|+.+ ....++..+..+ ...++++++||+
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 153 (199)
T 2gf0_A 79 KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWKCAFMETSAK 153 (199)
T ss_dssp HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-----HhCCeEEEEecC
Confidence 99999999999999999888877766654322 24689999999999976 345555555554 345689999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 154 ~~ 155 (199)
T 2gf0_A 154 MN 155 (199)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 77
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=2.6e-26 Score=162.19 Aligned_cols=144 Identities=25% Similarity=0.425 Sum_probs=110.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...++|+++|++|+|||||++++.+ ........++++... ..+...+ ..+.+|||||++.+...+..+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR 91 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH------CCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 4568999999999999999999987 222333444444333 3344444 67999999999999888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
.+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. ....++..+... ...++++++||++
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 165 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKN 165 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence 99999999999999999888888887765432 5789999999999954 344555555554 3345799999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 166 ~ 166 (213)
T 3cph_A 166 D 166 (213)
T ss_dssp T
T ss_pred C
Confidence 6
No 78
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.94 E-value=8.2e-27 Score=163.80 Aligned_cols=144 Identities=25% Similarity=0.381 Sum_probs=107.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......++.+.. ...+...+ ..+.+|||||++.+...+..+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 96 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE------NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 96 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh------CCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence 4579999999999999999999976 22223333444433 23344444 68999999999888888888999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .....+..+.++ ...++++++||+
T Consensus 97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~ 170 (200)
T 2o52_A 97 GAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSAL 170 (200)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence 99999999999999999998888888765433 6789999999999975 345566666655 445789999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 171 ~g 172 (200)
T 2o52_A 171 TG 172 (200)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 79
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=2.8e-27 Score=166.41 Aligned_cols=147 Identities=21% Similarity=0.278 Sum_probs=88.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcce--eEEEEEec----CeEEEEEEcCCCCcchhhHHHH
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVS----NSKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~ 88 (170)
...++|+++|++|+|||||++++.+... .....+.+|++. ....+... ...+.+|||||++.+...+..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 93 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGS----KFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQY 93 (208)
T ss_dssp EEEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCC----cccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHH
Confidence 4678999999999999999999976210 222344455542 22344444 4689999999999999888899
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc---cCCHHHHHhHhCccccccceeEEE
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD---AVSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
++.+|++|+|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+.+ ....++..+.++ ...++++
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~ 168 (208)
T 2yc2_C 94 WNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFF 168 (208)
T ss_dssp CCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEE
T ss_pred HhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEE
Confidence 9999999999999999999999999888876543 25789999999999976 445667777665 3347899
Q ss_pred eeeccC-C
Q 030848 164 AVSGYD-G 170 (170)
Q Consensus 164 ~~Sa~~-g 170 (170)
++||++ |
T Consensus 169 ~~Sa~~~~ 176 (208)
T 2yc2_C 169 DVSANPPG 176 (208)
T ss_dssp ECCC----
T ss_pred EeccCCCC
Confidence 999998 5
No 80
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.3e-26 Score=160.49 Aligned_cols=143 Identities=19% Similarity=0.298 Sum_probs=108.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
...++|+++|++|+|||||++++.+ +.....+.++++.... .+...+ ..+.+||+||++.+...+..+++.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHH------SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence 4668999999999999999999987 2333344455544432 333433 679999999999998888889999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccc
Q 030848 92 AHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLD 156 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~ 156 (170)
+|++|+|+|++++.+++... .|+..+.... ++.|+++|+||+|+.+. ...++..+..+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 162 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK----- 162 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH-----
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH-----
Confidence 99999999999999998887 6666665542 47899999999999753 33444444444
Q ss_pred ccee-EEEeeeccCC
Q 030848 157 ERVC-MFEAVSGYDG 170 (170)
Q Consensus 157 ~~~~-~~~~~Sa~~g 170 (170)
.... +++++||++|
T Consensus 163 ~~~~~~~~~~Sa~~g 177 (194)
T 2atx_A 163 EIGACCYVECSALTQ 177 (194)
T ss_dssp HHTCSCEEECCTTTC
T ss_pred HcCCcEEEEeeCCCC
Confidence 2233 7999999986
No 81
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=1.8e-26 Score=158.91 Aligned_cols=147 Identities=24% Similarity=0.350 Sum_probs=99.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEec---CeEEEEEEcCCCCcchhhHHHH
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS---NSKLVFWDLGGQPGLRSIWEKY 88 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~ 88 (170)
.++.++|+++|++|+|||||++++.+ ........++.+.. ...+... ...+.+|||||++.+...+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 78 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVN------DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF 78 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH------SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHh------CcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHH
Confidence 45789999999999999999999987 22233334444333 2233333 4679999999999999888889
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCcccc---CCHHHHHhHhCccccccceeEE
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPDA---VSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~ii~v~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
++.+|++|+|+|++++.+++.+..|+..+.... ...+.|+++++||+|+.+. ...++..+..+. ...+++
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~ 154 (182)
T 1ky3_A 79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS----LGDIPL 154 (182)
T ss_dssp STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----TTSCCE
T ss_pred hhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh----cCCCeE
Confidence 999999999999999999998888888776542 2357899999999999542 345555554431 235679
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+++||++|
T Consensus 155 ~~~Sa~~~ 162 (182)
T 1ky3_A 155 FLTSAKNA 162 (182)
T ss_dssp EEEBTTTT
T ss_pred EEEecCCC
Confidence 99999986
No 82
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-26 Score=164.01 Aligned_cols=144 Identities=24% Similarity=0.411 Sum_probs=107.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...++|+++|++|+|||||++++.+ ........++.+... ..+...+ ..+.+|||||++.+...+..+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 84 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTK------NEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYR 84 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHH------CCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhc
Confidence 4678999999999999999999987 333333344444333 2344444 68999999999999888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+.++ ...++++++||+
T Consensus 85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 158 (223)
T 3cpj_B 85 GAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSAL 158 (223)
T ss_dssp TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence 9999999999999999999988888886543 35789999999999976 345566666665 345789999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 159 ~~ 160 (223)
T 3cpj_B 159 NS 160 (223)
T ss_dssp -C
T ss_pred CC
Confidence 86
No 83
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=1e-25 Score=159.47 Aligned_cols=129 Identities=30% Similarity=0.392 Sum_probs=93.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec---CeEEEEEEcCCCCcchh-hHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGLRS-IWEKYY 89 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~~~ 89 (170)
.++.++|+++|++|+|||||++++.+ +.....+ +++......+... +..+.+|||||++.+.. .+..++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 76 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLT------GQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFK 76 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHH------SCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC------CCccccc-CCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHH
Confidence 45679999999999999999999987 2233333 2334444445555 57899999999999887 788889
Q ss_pred hccCEEEEEEeCCCcc-cHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccccCCHHHHHhH
Q 030848 90 EEAHAVVFVIDAACPS-RFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPDAVSADELARY 149 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~~~~~~~~~~~ 149 (170)
+.+|++|+|+|+++.. ++.....++..++.. ....+.|+++|+||+|+.+....++..+.
T Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 139 (214)
T 2fh5_B 77 SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ 139 (214)
T ss_dssp GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHH
Confidence 9999999999999853 455566655555432 22357899999999999876655444433
No 84
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.94 E-value=1.5e-26 Score=163.02 Aligned_cols=148 Identities=19% Similarity=0.292 Sum_probs=104.8
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHH
Q 030848 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEK 87 (170)
Q Consensus 11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~ 87 (170)
.....+.+||+++|.+|+|||||++++.. +.......+++..... .+.. ....+.+|||||++.+...+..
T Consensus 24 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 97 (204)
T 4gzl_A 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPL 97 (204)
T ss_dssp ------CEEEEEEESTTSSHHHHHHHHHH------SCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGG
T ss_pred HhhcCCeEEEEEECcCCCCHHHHHHHHHh------CCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHH
Confidence 34456789999999999999999999986 3333344444443322 2233 3456779999999999988888
Q ss_pred HhhccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCc
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDL 152 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~ 152 (170)
+++.+|++++|+|++++.+++... .|+..+.... ++.|+++|+||+|+.+.. ..++..+..+.
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh
Confidence 999999999999999999998887 5665555433 578999999999997642 23333333331
Q ss_pred cccccceeEEEeeeccCC
Q 030848 153 KKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 153 ~~~~~~~~~~~~~Sa~~g 170 (170)
....+++++||++|
T Consensus 176 ----~~~~~~~~~SA~~g 189 (204)
T 4gzl_A 176 ----IGAVKYLECSALTQ 189 (204)
T ss_dssp ----TTCSEEEECCTTTC
T ss_pred ----cCCcEEEEeeCCCC
Confidence 12247999999987
No 85
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=1.7e-26 Score=159.60 Aligned_cols=143 Identities=20% Similarity=0.317 Sum_probs=105.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
+..++|+++|++|+|||||++++.+ +.....+.+++..... .+.. ....+.+|||||++.+...+..+++.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 76 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ 76 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccC
Confidence 4679999999999999999999986 2223333344443322 2233 34568899999999998888889999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccc
Q 030848 92 AHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLD 156 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~ 156 (170)
+|++++|+|++++.+++... .|+..+.... ++.|+++|+||+|+.+. ...++..+..+
T Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 149 (186)
T 1mh1_A 77 TDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK----- 149 (186)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH-----
T ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHH-----
Confidence 99999999999999998887 5666665432 47899999999999753 22333333333
Q ss_pred cce-eEEEeeeccCC
Q 030848 157 ERV-CMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~-~~~~~~Sa~~g 170 (170)
... .+++++||++|
T Consensus 150 ~~~~~~~~~~Sa~~g 164 (186)
T 1mh1_A 150 EIGAVKYLECSALTQ 164 (186)
T ss_dssp HTTCSEEEECCTTTC
T ss_pred hcCCcEEEEecCCCc
Confidence 223 38999999986
No 86
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=4.2e-27 Score=167.57 Aligned_cols=144 Identities=18% Similarity=0.377 Sum_probs=111.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE----EecCeEEEEEEcCCCCcchhhHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI----EVSNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
....+||+++|.+|+|||||++++.. +.....+.++.+...... +.....+.+|||||++.+...+..++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 85 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY 85 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHH------HHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHH
Confidence 45679999999999999999999654 122233445554443332 23456899999999999988889999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+.+|++|+|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+.....+..+..+ ...++++++||++
T Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 158 (221)
T 3gj0_A 86 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKS 158 (221)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHHH-----HHTCEEEECBGGG
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHHH-----HcCCEEEEEeCCC
Confidence 99999999999999999999988888887653 4789999999999987544333333333 4457899999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 159 ~ 159 (221)
T 3gj0_A 159 N 159 (221)
T ss_dssp T
T ss_pred C
Confidence 6
No 87
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=9.8e-27 Score=164.52 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=108.4
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
.....++|+++|++|+|||||++++.. +.....+.++++.... .+.. ....+.+|||||++.+...+..++
T Consensus 5 ~~~~~~ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 78 (212)
T 2j0v_A 5 SVSKFIKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSY 78 (212)
T ss_dssp SCCCEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGG
T ss_pred CcCceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhc
Confidence 345789999999999999999999986 2333344455544432 2333 346899999999999988888899
Q ss_pred hccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC----------CHHHHHhHhCccccccc
Q 030848 90 EEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV----------SADELARYLDLKKLDER 158 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~----------~~~~~~~~~~~~~~~~~ 158 (170)
+.+|++|+|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.. ..++..+..+ ..
T Consensus 79 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~-----~~ 151 (212)
T 2j0v_A 79 RGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK-----QI 151 (212)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH-----HH
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH-----Hc
Confidence 9999999999999999998886 6666665442 478999999999997632 4555555554 22
Q ss_pred e-eEEEeeeccCC
Q 030848 159 V-CMFEAVSGYDG 170 (170)
Q Consensus 159 ~-~~~~~~Sa~~g 170 (170)
. .+++++||++|
T Consensus 152 ~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 152 GAAAYIECSSKTQ 164 (212)
T ss_dssp TCSEEEECCTTTC
T ss_pred CCceEEEccCCCC
Confidence 3 48999999986
No 88
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=5.7e-26 Score=160.95 Aligned_cols=146 Identities=19% Similarity=0.279 Sum_probs=104.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEec--CeEEEEEEcCCCCc-chhhHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS--NSKLVFWDLGGQPG-LRSIWEKYY 89 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~ 89 (170)
...+||+++|++|+|||||++++.+...... ..+ ++++.. ...+.+. ...+.+|||+|++. .......++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~----~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~ 109 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMD----SDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM 109 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTC----CC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC----CcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHH
Confidence 4568999999999999999999975211111 111 122222 2233343 35678999999876 344555667
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+.++++|+|||++++.+|+.+..|+..+.......+.|+++|+||+|+.+ ....++...... ...++|++|||
T Consensus 110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~-----~~~~~~~e~SA 184 (211)
T 2g3y_A 110 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV-----VFDCKFIETSA 184 (211)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBT
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH-----HcCCEEEEEeC
Confidence 88999999999999999999988888776543345789999999999975 345555544443 34568999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 185 k~g 187 (211)
T 2g3y_A 185 AVQ 187 (211)
T ss_dssp TTT
T ss_pred CCC
Confidence 987
No 89
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=3.5e-26 Score=161.32 Aligned_cols=145 Identities=22% Similarity=0.304 Sum_probs=102.7
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHHh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
.....+||+++|.+|+|||||++++.+ +.....+.+++..... .+... ...+.+|||||++.+...+..++
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 94 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSK------DEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHH------SSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGC
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhc------CCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhc
Confidence 346778999999999999999999987 2333334445444432 23333 35799999999999988888899
Q ss_pred hccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCccc
Q 030848 90 EEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKK 154 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~ 154 (170)
+.+|++|+|+|++++.+++.. ..|+..+.... ++.|+++|+||+|+.+.. ..++..+...
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 169 (207)
T 2fv8_A 95 PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV--- 169 (207)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH---
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH---
Confidence 999999999999999999888 45555554432 578999999999997642 2222222222
Q ss_pred cccce-eEEEeeeccCC
Q 030848 155 LDERV-CMFEAVSGYDG 170 (170)
Q Consensus 155 ~~~~~-~~~~~~Sa~~g 170 (170)
... .+++++||++|
T Consensus 170 --~~~~~~~~~~SA~~g 184 (207)
T 2fv8_A 170 --RIQAYDYLECSAKTK 184 (207)
T ss_dssp --HTTCSEEEECCTTTC
T ss_pred --hcCCCEEEEeeCCCC
Confidence 122 38999999986
No 90
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=5.2e-27 Score=161.82 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=98.3
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
..+..+||+++|++|+|||||++++.. +.....+.++++.... .++.....+.+|||||++.+...+..++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 77 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTS------NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSY 77 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHH------SCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGG
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhc
Confidence 345789999999999999999999986 2223333344432221 1233456678999999999988888899
Q ss_pred hccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC------------CHHHHHhHhCccccc
Q 030848 90 EEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV------------SADELARYLDLKKLD 156 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~------------~~~~~~~~~~~~~~~ 156 (170)
+.+|++++|+|++++.+++.+. .|...+.... ++.|+++++||+|+.+.. ..++..+..+
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~----- 150 (182)
T 3bwd_D 78 RGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK----- 150 (182)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH-----
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH-----
Confidence 9999999999999999998887 5666665442 478999999999997532 3444454444
Q ss_pred cce-eEEEeeeccCC
Q 030848 157 ERV-CMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~-~~~~~~Sa~~g 170 (170)
... .+++++||++|
T Consensus 151 ~~~~~~~~~~Sa~~~ 165 (182)
T 3bwd_D 151 LIGAPAYIECSSKSQ 165 (182)
T ss_dssp HHTCSEEEECCTTTC
T ss_pred HcCCCEEEEEECCCC
Confidence 223 38999999986
No 91
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=5e-26 Score=159.85 Aligned_cols=144 Identities=23% Similarity=0.339 Sum_probs=105.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
....+||+++|.+|+|||||++++.+ +.....+.++++... ..+... ...+.+|||||++.+...+..+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 95 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYP 95 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHH------SSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHh------CcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcC
Confidence 35678999999999999999999987 222233344444332 223333 357999999999999888888999
Q ss_pred ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCcccc
Q 030848 91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKL 155 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~ 155 (170)
.+|++|+|+|++++.+++.. ..|...+.... ++.|+++|+||+|+.+. ...++..+.++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 169 (201)
T 2gco_A 96 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMAN---- 169 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHH----
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHH----
Confidence 99999999999999999888 45555554432 57899999999999764 22333333333
Q ss_pred cccee-EEEeeeccCC
Q 030848 156 DERVC-MFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~~-~~~~~Sa~~g 170 (170)
.... +++++||++|
T Consensus 170 -~~~~~~~~~~SA~~g 184 (201)
T 2gco_A 170 -RISAFGYLECSAKTK 184 (201)
T ss_dssp -HTTCSEEEECCTTTC
T ss_pred -hCCCcEEEEeeCCCC
Confidence 2223 8999999986
No 92
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=2.8e-26 Score=161.84 Aligned_cols=143 Identities=23% Similarity=0.354 Sum_probs=106.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
....+||+++|++|+|||||++++.+ ......+.++...... .+.. ....+.+|||||++.+...+..+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 98 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 98 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence 35679999999999999999999987 3333444455554432 2222 3467999999999998888888999
Q ss_pred ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCcccc
Q 030848 91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKL 155 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~ 155 (170)
.+|++|+|+|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+ ....++..+.++..
T Consensus 99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 174 (205)
T 1gwn_A 99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI-- 174 (205)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc--
Confidence 99999999999999999888 56766665432 5789999999999974 23445555555411
Q ss_pred ccceeEEEeeecc
Q 030848 156 DERVCMFEAVSGY 168 (170)
Q Consensus 156 ~~~~~~~~~~Sa~ 168 (170)
..++|++|||+
T Consensus 175 --~~~~~~e~SAk 185 (205)
T 1gwn_A 175 --GAATYIECSAL 185 (205)
T ss_dssp --TCSEEEECCTT
T ss_pred --CCCEEEEeeec
Confidence 13589999998
No 93
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=162.56 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=90.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
...+||+++|++|+|||||++++.+ +.....+.+++..... .+.. ....+.+|||||++.+...+..+++.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 105 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD------GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPD 105 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------------CCCCCEEEEEEEEETTEEEEEEEEEC---------------C
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhcc
Confidence 4679999999999999999999976 2223333444443322 2333 34579999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCccccc
Q 030848 92 AHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLD 156 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~ 156 (170)
+|++|+|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.. ..++..+..+
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 178 (214)
T 2j1l_A 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR----- 178 (214)
T ss_dssp EEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH-----
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH-----
Confidence 99999999999999998886 5666665432 578999999999997632 3333344443
Q ss_pred cce-eEEEeeeccCC
Q 030848 157 ERV-CMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~-~~~~~~Sa~~g 170 (170)
... .++++|||++|
T Consensus 179 ~~~~~~~~~~SA~~g 193 (214)
T 2j1l_A 179 SVGAVAYLECSARLH 193 (214)
T ss_dssp HTTCSEEEECBTTTT
T ss_pred hcCCCEEEEecCCCC
Confidence 223 38999999986
No 94
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=4.8e-26 Score=160.15 Aligned_cols=147 Identities=22% Similarity=0.374 Sum_probs=110.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
.+..++|+++|++|+|||||++++.+ ......+.++.+.... .+... ...+.+|||||++.+...+..++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 78 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHH
Confidence 45789999999999999999999987 3333344455554433 23333 36799999999999888888889
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
+.+|++|+|+|++++.+++.+..|+..+..... ..+.|+++++||+|+.+ ....++..+... ....++++++
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~ 154 (207)
T 1vg8_A 79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFET 154 (207)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEEC
T ss_pred hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEE
Confidence 999999999999999999888888877765432 24689999999999975 344455554443 1345679999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 155 Sa~~g 159 (207)
T 1vg8_A 155 SAKEA 159 (207)
T ss_dssp BTTTT
T ss_pred eCCCC
Confidence 99986
No 95
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=160.72 Aligned_cols=144 Identities=17% Similarity=0.297 Sum_probs=103.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
....++|+++|++|+|||||++++.+ +.....+.+|+..... .+...+ ..+.+|||||++.+...+..+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 90 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT------NGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT 90 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcC
Confidence 45679999999999999999999986 2233444455554432 233444 56889999999999888888999
Q ss_pred ccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCcccc
Q 030848 91 EAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKL 155 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~ 155 (170)
.+|++|+|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+.+. ...++..+...
T Consensus 91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 164 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE---- 164 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH----
Confidence 999999999999999998886 5766665543 47899999999999752 33444444443
Q ss_pred ccce-eEEEeeeccCC
Q 030848 156 DERV-CMFEAVSGYDG 170 (170)
Q Consensus 156 ~~~~-~~~~~~Sa~~g 170 (170)
... .++++|||++|
T Consensus 165 -~~~~~~~~~~Sa~~g 179 (201)
T 2q3h_A 165 -EIKAASYIECSALTQ 179 (201)
T ss_dssp -HHTCSEEEECCTTTC
T ss_pred -hcCCcEEEEEecCCC
Confidence 223 38999999986
No 96
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.93 E-value=2.3e-25 Score=155.57 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=100.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEec--CeEEEEEEcCCCCc-chhhHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS--NSKLVFWDLGGQPG-LRSIWEKYY 89 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~ 89 (170)
...+||+++|++|+|||||++++.+...... ... ++++.. ...+.+. ...+.+|||+|++. .......++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~ 78 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMD----SDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM 78 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC---------GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcC----ccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhc
Confidence 5679999999999999999999976222111 111 112222 2233443 34678999999765 333456677
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (170)
+.+|++++|||++++.+++....|+..+.......+.|+++++||+|+.+ ....++...... ...++|++|||
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~-----~~~~~~~e~SA 153 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV-----VFDXKFIETSA 153 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH-----HhCCceEEecc
Confidence 88999999999999999999988887776543335789999999999974 344444444333 33468999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 154 ~~g 156 (192)
T 2cjw_A 154 AVQ 156 (192)
T ss_dssp TTT
T ss_pred ccC
Confidence 987
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.93 E-value=5.9e-26 Score=157.41 Aligned_cols=147 Identities=18% Similarity=0.304 Sum_probs=100.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-------cCeEEEEEEcCCCCcchhhHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-------SNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
++||+++|++|+|||||++++.+... .....+.+|++........ ....+.+|||+|++.+...+..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~----~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 77 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKK----SDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 77 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC----ccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHc
Confidence 58999999999999999999976211 1223344566665543322 456899999999998888888889
Q ss_pred hccCEEEEEEeCCCc-ccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HH-HHhHhCccccccceeEEE
Q 030848 90 EEAHAVVFVIDAACP-SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DE-LARYLDLKKLDERVCMFE 163 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~-~~~~~~~~~~~~~~~~~~ 163 (170)
+.++++++|+|++++ .+++.+..|+..+.... ++.|+++|+||+|+.+.... .+ ..+..+..+. ....+++
T Consensus 78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 154 (184)
T 2zej_A 78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF-PAIRDYH 154 (184)
T ss_dssp HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS-CEEEEEE
T ss_pred cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC-cchhheE
Confidence 999999999999987 47888888888776542 47899999999999753221 11 1222221111 2223599
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||++|
T Consensus 155 ~~Sa~~~ 161 (184)
T 2zej_A 155 FVNATEE 161 (184)
T ss_dssp ECCTTSC
T ss_pred EEecccC
Confidence 9999986
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=5e-27 Score=164.64 Aligned_cols=144 Identities=27% Similarity=0.442 Sum_probs=101.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 90 (170)
...+||+++|++|+|||||++++.+ +.......++.+.. ...+...+ ..+.+|||||++.+...+..+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 104 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 104 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC------CCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--C
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhh
Confidence 3568999999999999999999975 33334444444433 33444444 67999999999999888888899
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeecc
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+. ...++..+..+ ...++++++||+
T Consensus 105 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSA~ 178 (199)
T 3l0i_B 105 GAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGIPFLETSAK 178 (199)
T ss_dssp CCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH-----TTTCCBCCCCC-
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-CCCCEEEEEECccCCccccCCHHHHHHHHH-----HcCCeEEEEECC
Confidence 99999999999999999999988888865433 57899999999999753 22233333333 334679999999
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 179 ~g 180 (199)
T 3l0i_B 179 NA 180 (199)
T ss_dssp --
T ss_pred CC
Confidence 86
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=9.6e-25 Score=152.70 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=98.2
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-ecCeEEEEEEcCCCCcchhhH---HHH
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQPGLRSIW---EKY 88 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~ 88 (170)
..++.+||+++|++|+|||||++++.+..... .......+.......+. .....+.+|||||++.+.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 34578999999999999999999886621111 00011111111111121 455789999999999987765 788
Q ss_pred hhccCEEEEEEeCCCc--ccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHH----HhHhCccccccc
Q 030848 89 YEEAHAVVFVIDAACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DEL----ARYLDLKKLDER 158 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~----~~~~~~~~~~~~ 158 (170)
++.+|++|+|+|++++ +++.....|+..+... .++.|+++|+||+|+.+.... .++ .+.+........
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 9999999999999987 5556666666665332 258999999999998652211 111 111221222256
Q ss_pred eeEEEeeeccC
Q 030848 159 VCMFEAVSGYD 169 (170)
Q Consensus 159 ~~~~~~~Sa~~ 169 (170)
.++|++|||++
T Consensus 171 ~~~~~e~Sa~~ 181 (196)
T 3llu_A 171 HLSFYLTSIYD 181 (196)
T ss_dssp CEEEEEECTTS
T ss_pred CcceEEEEech
Confidence 78999999985
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=8.2e-27 Score=164.08 Aligned_cols=145 Identities=20% Similarity=0.309 Sum_probs=103.1
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYY 89 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 89 (170)
..++.+||+++|.+|+|||||++++.. +.......+++..... .++.....+.+|||||++.+...+..++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 99 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 99 (204)
Confidence 346789999999999999999999975 2222223333322221 2333456688999999999998888999
Q ss_pred hccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccCC--------------HHHHHhHhCccc
Q 030848 90 EEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVS--------------ADELARYLDLKK 154 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--------------~~~~~~~~~~~~ 154 (170)
+.+|++++|+|++++.+++... .|+..+.... ++.|+++|+||+|+.+... .++..+..+
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 174 (204)
T 3th5_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK--- 174 (204)
Confidence 9999999999999999998886 5555554322 3789999999999976321 112222222
Q ss_pred ccccee-EEEeeeccCC
Q 030848 155 LDERVC-MFEAVSGYDG 170 (170)
Q Consensus 155 ~~~~~~-~~~~~Sa~~g 170 (170)
.... +++++||++|
T Consensus 175 --~~~~~~~~~vSA~~g 189 (204)
T 3th5_A 175 --EIGAVKYLECSALTQ 189 (204)
Confidence 3334 8999999986
No 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.92 E-value=3e-24 Score=160.08 Aligned_cols=149 Identities=18% Similarity=0.254 Sum_probs=108.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCCCcc-----hhhHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGL-----RSIWEKYY 89 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~ 89 (170)
..+||+++|.+|+|||||++++.+.... .......+|.+.....+.. .+..+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~---~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSA---FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCT---GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999998762111 1112455677777766664 5688999999999887 56788888
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCccccCCH--------HHHHhHhCcccccccee
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSA--------DELARYLDLKKLDERVC 160 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~ 160 (170)
+.+|++|+|+|++++.+++.+..|...+.... ..++.|+++++||+|+.++... +++.+..+..+. ..+
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~--~~~ 156 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF--PNL 156 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC--CSC
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC--CCe
Confidence 99999999999999999988876644432211 1257999999999999763222 333333331111 137
Q ss_pred EEEeeeccC
Q 030848 161 MFEAVSGYD 169 (170)
Q Consensus 161 ~~~~~Sa~~ 169 (170)
+++++||++
T Consensus 157 ~~~~tSa~~ 165 (307)
T 3r7w_A 157 IGFPTSIWD 165 (307)
T ss_dssp EEEECCTTS
T ss_pred EEEEeeecC
Confidence 999999986
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=8.2e-24 Score=145.23 Aligned_cols=145 Identities=21% Similarity=0.286 Sum_probs=100.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..+.++|+++|++|+|||||++++.+. .......+ +.......+...+..+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS------KVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQV 78 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT------CSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC------ccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhh
Confidence 457789999999999999999999762 11111111 2233334566778889999999999988888888899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc--cc--ceeEEEeeec
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL--DE--RVCMFEAVSG 167 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa 167 (170)
+|++|+|+|++++...+. ...+..+.. .+.|+++|+||+|+.+. ..++..+.++.... .. ..++++++||
T Consensus 79 ~d~~i~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 79 TDIVILVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp CCEEEEEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred CCEEEEEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 999999999988544332 222333322 47899999999999764 33444444332211 11 2379999999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 153 ~~~ 155 (178)
T 2lkc_A 153 KTK 155 (178)
T ss_dssp SSS
T ss_pred CCC
Confidence 986
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=4e-24 Score=159.16 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=98.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh---hHHHHhhccCEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEAHAV 95 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~ 95 (170)
||+++|+.|+||||+++++.+... ........+|++.....+. ...++++|||+|++++.. .+..+++.++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~---~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ---PLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC---SGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC---CCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 689999999999999998764111 1111235577777766553 457899999999999964 468899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccccCCH----HHHH----hHhCccccccceeEEEee
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPDAVSA----DELA----RYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~ 165 (170)
|+|||+++. +.+...++..++.. ...++.|+++++||+|+.++..+ .++. +.+...+.+...++|++|
T Consensus 77 IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 77 VYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 999999987 33344444333221 11267999999999999764321 1111 122222222357899999
Q ss_pred eccC
Q 030848 166 SGYD 169 (170)
Q Consensus 166 Sa~~ 169 (170)
||++
T Consensus 155 SAkd 158 (331)
T 3r7w_B 155 SIFD 158 (331)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 9985
No 104
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=6.7e-25 Score=155.67 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=102.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc--
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE-- 91 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 91 (170)
....++|+++|++|+|||||++++.+... . .......+++... .....+.+|||||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~--~-~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSV--R-PTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSC--C-CBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCC--C-CeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 45678999999999999999999987211 1 1111233333222 256789999999999998888888887
Q ss_pred --cCEEEEEEeCC-CcccHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccccCCHHHHHhHhCc---cccccceeEE
Q 030848 92 --AHAVVFVIDAA-CPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPDAVSADELARYLDL---KKLDERVCMF 162 (170)
Q Consensus 92 --~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~ 162 (170)
+|++|+|+|++ ++.++.....++..+.... ...+.|+++++||+|+.+.....++.+.++. .......+++
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL 160 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999 8889998888888886542 2257999999999999886664433332221 0011234567
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+++||++|
T Consensus 161 ~~~Sa~~~ 168 (218)
T 1nrj_B 161 NEVERKIN 168 (218)
T ss_dssp HC------
T ss_pred cccccccc
Confidence 78887765
No 105
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=1.7e-23 Score=145.85 Aligned_cols=147 Identities=19% Similarity=0.182 Sum_probs=94.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcchh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRS 83 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 83 (170)
....++|+++|++|+|||||++++.+.. ...........+..... ... +..+.+||||| ++.+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~t~~~~~--~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRK--NLARTSSKPGKTQTLNF--YII-NDELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEE--EEE-TTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC--CccccCCCCCceeeEEE--EEE-CCcEEEEECCCCCccccCHHHHHHHHH
Confidence 4467999999999999999999998621 01111111112222222 222 34799999999 566666
Q ss_pred hHHHHhhcc---CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848 84 IWEKYYEEA---HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (170)
Q Consensus 84 ~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
.+..+++.+ |++++|+|++++.++.... .+..+.. .+.|+++|+||+|+.+.....+..+.++........+
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 777777777 9999999999887776532 2222222 5789999999999987554433322222111123467
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
+++++||++|
T Consensus 170 ~~~~~Sa~~~ 179 (195)
T 1svi_A 170 ELILFSSETK 179 (195)
T ss_dssp EEEECCTTTC
T ss_pred ceEEEEccCC
Confidence 8999999986
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.90 E-value=2.6e-23 Score=141.70 Aligned_cols=137 Identities=23% Similarity=0.259 Sum_probs=91.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEecCeEEEEEEcCCCCcch------hhHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEK 87 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~ 87 (170)
+.++|+++|++|+|||||++++.+... .....+ +.......+...+..+.+|||||++.+. .....
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 75 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENV------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARD 75 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSS------SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCe------eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHH
Confidence 468999999999999999999976211 111112 2233344566677899999999988763 33455
Q ss_pred Hhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEEe
Q 030848 88 YYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 88 ~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
+++ .++++++|+|+++. +....|+..+.. .+.|+++++||+|+.+... ..+..+..+ ...+++++
T Consensus 76 ~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~ 143 (165)
T 2wji_A 76 YIINEKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEK-----ILGVKVVP 143 (165)
T ss_dssp HHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHH-----HHTSCEEE
T ss_pred HHhcCCCCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHH-----HhCCCEEE
Confidence 554 89999999999874 334445555544 3689999999999865211 111222222 22357999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 144 ~SA~~~ 149 (165)
T 2wji_A 144 LSAAKK 149 (165)
T ss_dssp CBGGGT
T ss_pred EEcCCC
Confidence 999986
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.90 E-value=3.1e-23 Score=142.36 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=94.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh--------HH
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WE 86 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 86 (170)
++..+|+++|++|+|||||++++.+...... ......+.......+...+..+.+|||||++..... ..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIV---TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW 78 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCC---CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccee---eCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH
Confidence 3568999999999999999999986321111 111112233334456677788999999998653211 12
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.+++.+|++++|+|++++.+++. ..|+..+.... ..+.|+++|+||+|+.+... +.. .....+++++|
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~-----~~~-----~~~~~~~~~~S 146 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL-----GMS-----EVNGHALIRLS 146 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC-----EEE-----EETTEEEEECC
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh-----hhh-----hccCCceEEEe
Confidence 35789999999999999888763 45555554432 25789999999999964311 111 12457899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 147 A~~g 150 (172)
T 2gj8_A 147 ARTG 150 (172)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9986
No 108
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.90 E-value=2.4e-23 Score=156.03 Aligned_cols=143 Identities=20% Similarity=0.304 Sum_probs=106.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
+..++|+++|.+|+|||||++++.. +.....+.+++..... .+...+ ..+.+|||||++.+...+..+++.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 226 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 226 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHH------SCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTT
T ss_pred cceeEEEEECCCCCChHHHHHHHHh------CCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccC
Confidence 4669999999999999999999986 3333344455544332 233343 456699999999998888889999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccc
Q 030848 92 AHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLD 156 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~ 156 (170)
+|++++|+|++++.+++... .|+..+.... ++.|+++|+||+|+.+. ...++..+.++
T Consensus 227 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 299 (332)
T 2wkq_A 227 TDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK----- 299 (332)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH-----
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH-----
Confidence 99999999999999998887 5555554432 38899999999999653 23334444443
Q ss_pred cce-eEEEeeeccCC
Q 030848 157 ERV-CMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~-~~~~~~Sa~~g 170 (170)
... .++++|||++|
T Consensus 300 ~~~~~~~~~~Sa~~~ 314 (332)
T 2wkq_A 300 EIGAVKYLECSALTQ 314 (332)
T ss_dssp HTTCSEEEECCTTTC
T ss_pred HcCCcEEEEecCCCC
Confidence 223 38999999986
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=2.9e-23 Score=140.20 Aligned_cols=138 Identities=24% Similarity=0.306 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-------chhhHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEKYYE 90 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~ 90 (170)
.||+++|++|+|||||++++.+...... ......+.......+...+..+.+|||||.+. +...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV---ADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec---cCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 5899999999999999999987221111 11112233344445667788999999999776 3456667889
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.+|++++|+|++++.+... .++...... .+.|+++++||+|+.+.. ++..+..+ ....+++++||++|
T Consensus 79 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~~~~-----~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGPLYG-----LGFGDPIPTSSEHA 146 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGGGGG-----GSSCSCEECBTTTT
T ss_pred hCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhHHHHHh-----CCCCCeEEEecccC
Confidence 9999999999998644322 233333322 478999999999997651 22222221 11226999999986
No 110
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.90 E-value=6.1e-23 Score=143.82 Aligned_cols=143 Identities=26% Similarity=0.386 Sum_probs=106.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..++++++|++|+|||||++++.+ ........++.+.. ...+...+ ..+.+||++|++.+...+..+++.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 77 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 77 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhc
Confidence 468999999999999999999987 33333334454433 22344444 568899999999888878888899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
++++++|+|+++..+++....|+..+... ...+.|+++++||+|+.+ ....+++...+. ...+.++++||++
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~~d~Sal~ 151 (199)
T 2f9l_A 78 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALD 151 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCeEEEEeCCC
Confidence 99999999999998888887777666443 225789999999999975 345556665555 4456899999987
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 152 ~ 152 (199)
T 2f9l_A 152 S 152 (199)
T ss_dssp C
T ss_pred C
Confidence 5
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=8.5e-23 Score=146.02 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=94.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC------Ccc---hhhH
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGL---RSIW 85 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~ 85 (170)
...++|+++|.+|+|||||++++.+...... .....+...........+..+.+|||||+ +.. ...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 102 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ----SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTI 102 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE----CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC----CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHH
Confidence 3568999999999999999999976211100 11112334444455667789999999998 331 1223
Q ss_pred HHHhhccCEEEEEEeCCCcccHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHH---HHHhHhCccccccc
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SAD---ELARYLDLKKLDER 158 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~---~~~~~~~~~~~~~~ 158 (170)
..+++.+|++|+|+|++++.+++ ....++..+... .++.|+++|+||+|+.+.. ..+ ...+.... ...
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 177 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN---VKN 177 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH---CCS
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh---cCC
Confidence 44568889999999999987764 233455555443 2478999999999997632 222 22222220 012
Q ss_pred eeEEEeeeccCC
Q 030848 159 VCMFEAVSGYDG 170 (170)
Q Consensus 159 ~~~~~~~Sa~~g 170 (170)
.+++++|||++|
T Consensus 178 ~~~~~~~SA~~g 189 (228)
T 2qu8_A 178 PIKFSSFSTLTG 189 (228)
T ss_dssp CEEEEECCTTTC
T ss_pred CceEEEEecccC
Confidence 278999999986
No 112
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=1.7e-22 Score=140.38 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=94.6
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcch
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLR 82 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~ 82 (170)
.....++|+++|++|+|||||++++.+.. .. ........+.... ....+..+.+||||| ++.+.
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~-~~~~~~~~t~~~~---~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRK--IA-FVSKTPGKTRSIN---FYLVNSKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSC--CS-CCCSSCCCCCCEE---EEEETTTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCc--cc-cccCCCCCccCeE---EEEECCcEEEEECCCCccccCChhhHHHHH
Confidence 34566899999999999999999998722 11 1111111222222 222355789999999 55566
Q ss_pred hhHHHHhhcc---CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccce
Q 030848 83 SIWEKYYEEA---HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 159 (170)
Q Consensus 83 ~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
..+..+++.+ +++++|+|+++..+.... .....+.. .+.|+++|+||+|+.++.......+.++........
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 6666777665 999999999876544322 11122222 268999999999998765555444444322222345
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++++++||++|
T Consensus 168 ~~~~~~Sa~~~ 178 (195)
T 3pqc_A 168 YTIIPTSSVTG 178 (195)
T ss_dssp SCEEECCTTTC
T ss_pred CceEEEecCCC
Confidence 78999999986
No 113
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.89 E-value=2.9e-22 Score=139.67 Aligned_cols=143 Identities=25% Similarity=0.380 Sum_probs=107.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
..++++++|++|||||||++++.+ ........++++... ..+...+ ..+.+||++|.+.+...+..+++.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 101 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 101 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT
T ss_pred cceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc
Confidence 458999999999999999999987 333334445555443 2344444 456779999999888888888899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
++++++|+|..+..+++.+..|+..+... ...+.|+++++||+|+.+ .....++.+.++ ...+.++++||++
T Consensus 102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~ld~Sald 175 (191)
T 1oix_A 102 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNGLSFIETSALD 175 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence 99999999999998888877777665432 225789999999999975 344555665555 4456889999987
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 176 ~ 176 (191)
T 1oix_A 176 S 176 (191)
T ss_dssp C
T ss_pred C
Confidence 5
No 114
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=7.2e-23 Score=145.56 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=94.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-ecCeEEEEEEcCCC----------Ccch
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ----------PGLR 82 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~ 82 (170)
....++|+++|.+|+|||||+|++.+... ..........+.......+. ..+..+.+|||||. +.+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKR--LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSS--SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCc--ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34678999999999999999999987210 00111111123333333333 34678999999994 2334
Q ss_pred hhHHHHhhc---cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc---
Q 030848 83 SIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD--- 156 (170)
Q Consensus 83 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~--- 156 (170)
.....+++. +|++++|+|+++..+.. ...++..+.. .+.|+++|+||+|+.+.....+..+.+......
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 455566665 78899999998764422 2333333332 478999999999997644332222222211111
Q ss_pred ---cceeEEEeeeccCC
Q 030848 157 ---ERVCMFEAVSGYDG 170 (170)
Q Consensus 157 ---~~~~~~~~~Sa~~g 170 (170)
...++++++||++|
T Consensus 179 ~~~~~~~~~~~~SA~~g 195 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKR 195 (223)
T ss_dssp HTCCSCEEEEEEBTTTT
T ss_pred cccCCCCeEEEeecCCC
Confidence 35689999999986
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.89 E-value=1.1e-23 Score=145.97 Aligned_cols=144 Identities=18% Similarity=0.158 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC-----------CCcchhhHH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSIWE 86 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~ 86 (170)
+||+++|++|+|||||++++.+. .......+++......+... .+.+||||| ++.+...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~------~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK------KVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC------CCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCc------CCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence 68999999999999999999872 22222333333333333333 789999999 556666677
Q ss_pred HHhhc-cCEEEEEEeCCCcccHHHH-HHHHHH--------HHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc
Q 030848 87 KYYEE-AHAVVFVIDAACPSRFEDS-KTALEK--------VLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD 156 (170)
Q Consensus 87 ~~~~~-~~~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~ 156 (170)
.+++. ++++++|+++.+..++... ..|... +.......+.|+++++||+|+.+.. .++..+..+..+..
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCC
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhh
Confidence 77776 7766666666666677665 333221 2222222578999999999997643 23333333322221
Q ss_pred --cceeEEEeeeccCC
Q 030848 157 --ERVCMFEAVSGYDG 170 (170)
Q Consensus 157 --~~~~~~~~~Sa~~g 170 (170)
....+++++||++|
T Consensus 153 ~~~~~~~~~~~Sa~~~ 168 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFG 168 (190)
T ss_dssp GGGHHHHEEECCTTTC
T ss_pred hhccCCcEEEEecCCC
Confidence 11356899999986
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=3e-22 Score=138.72 Aligned_cols=138 Identities=22% Similarity=0.262 Sum_probs=94.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEecCeEEEEEEcCCCCcch------hhHH
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWE 86 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~ 86 (170)
.+.++|+++|++|+|||||++++.+.. ......+ +.......+...+..+.+|||||++.+. ..+.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 78 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGEN------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIAR 78 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTC------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC------ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHH
Confidence 356899999999999999999998621 1111122 2233444566778999999999988763 3455
Q ss_pred HHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEE
Q 030848 87 KYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 87 ~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 163 (170)
.+++ .++++++|+|+++ ++....|+..+.. .+.|+++++||+|+.+... ..+..+..+ ...++++
T Consensus 79 ~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~ 146 (188)
T 2wjg_A 79 DYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEK-----ILGVKVV 146 (188)
T ss_dssp HHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHH-----HHTSCEE
T ss_pred HHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHH-----HhCCCeE
Confidence 5654 4999999999875 4556666666654 4789999999999975321 112222222 2235799
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||++|
T Consensus 147 ~~Sa~~~ 153 (188)
T 2wjg_A 147 PLSAAKK 153 (188)
T ss_dssp ECBGGGT
T ss_pred EEEecCC
Confidence 9999986
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=2.2e-21 Score=144.69 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=102.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCcc----------h
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGL----------R 82 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~----------~ 82 (170)
..+.-.|+++|.+|+|||||+|++.+...... ......|........... +.++.+|||||.... .
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~---s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII---SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC---CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcccc---CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 45667899999999999999999987321111 111222333333345566 889999999997443 3
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-ccCCHHHHHhHhCccccccceeE
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSADELARYLDLKKLDERVCM 161 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~ 161 (170)
.....+++.+|++++|+|+++..+.+....|+..+.. .+.|+++|+||+|+. +.....+..+.+.... ....+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~ 157 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTE 157 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCe
Confidence 5667788999999999999998887776555555543 478999999999997 4444444333333111 13467
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
++++||++|
T Consensus 158 i~~vSA~~g 166 (308)
T 3iev_A 158 IVPISALKG 166 (308)
T ss_dssp EEECBTTTT
T ss_pred EEEEeCCCC
Confidence 999999986
No 118
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.4e-22 Score=141.05 Aligned_cols=129 Identities=22% Similarity=0.317 Sum_probs=94.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc---
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE--- 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--- 91 (170)
...++|+++|++|+|||||++++.+... .. ......++... +.....+.+|||||++.+...+..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~--~~-~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV--RP-TVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSC--C------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC--Cc-ccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 5678999999999999999999987211 11 11122222222 2256789999999998887777777665
Q ss_pred -cCEEEEEEeCC-CcccHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 92 -AHAVVFVIDAA-CPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 92 -~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
+|++|+|+|++ +..++.....|+..+.... ...+.|+++|+||+|+.+....++..+.+.
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 89999999999 8888988888888876542 225789999999999998777777766664
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.87 E-value=2.8e-22 Score=159.53 Aligned_cols=141 Identities=21% Similarity=0.341 Sum_probs=100.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE------------ecCeEEEEEEcCCCCcc
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE------------VSNSKLVFWDLGGQPGL 81 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~~ 81 (170)
....+||+++|.+|+|||||++++.+ ........+|++....... ..+..+.+||+||++.+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~------~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~ 111 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIG------ETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIM 111 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHH
Confidence 45679999999999999999999986 3333445566666554321 22578999999999999
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccce
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERV 159 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~ 159 (170)
......+++.+|++|+|+|+++. +....|...+.... ++.|+++|+||+|+.+ ....++..+.+. ...
T Consensus 112 ~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~ 181 (535)
T 3dpu_A 112 HASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIE 181 (535)
T ss_dssp TTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGT
T ss_pred HHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcC
Confidence 99889999999999999998865 44556666665543 4689999999999976 345666666666 444
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++++++||++|
T Consensus 182 ~~~~~vSA~~g 192 (535)
T 3dpu_A 182 NRFHRISCKNG 192 (535)
T ss_dssp TCEEECCC---
T ss_pred CceEEEecCcc
Confidence 57999999986
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=3.6e-21 Score=142.98 Aligned_cols=143 Identities=24% Similarity=0.221 Sum_probs=93.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc--------chhhHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEK 87 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 87 (170)
+..+|+++|.+|+|||||+|++.+.........+ ..|...........+.++.+|||||... +......
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~---~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRP---QTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS---CCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCC---CceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 4467999999999999999999873221111111 1111222223456788999999999765 4555667
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEEeee
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
+++.+|++++|+|++++.+.. ..++...+.... ++.|+++++||+|+.+... ..+..+.+ ....+++++|
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iS 153 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLS 153 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECC
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEe
Confidence 789999999999998875543 234433333221 4789999999999975432 22222222 2234699999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 154 A~~g 157 (301)
T 1wf3_A 154 ALDE 157 (301)
T ss_dssp TTCH
T ss_pred CCCC
Confidence 9875
No 121
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.5e-23 Score=151.37 Aligned_cols=150 Identities=11% Similarity=0.105 Sum_probs=97.3
Q ss_pred cCceeEEEEEcCC---------CCChHHHHHHHHhhcccCCCCCCCcccCCc-ceeE------------------EEEEe
Q 030848 14 TKTEFHVLILGID---------KAGKTTLLEKLKSVYSNVEGLPPDRIVPTV-GLNI------------------GRIEV 65 (170)
Q Consensus 14 ~~~~~~i~vvG~~---------~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~-~~~~------------------~~~~~ 65 (170)
....+||+++|.+ |+|||||++++.+... ........+++ +..+ ..++.
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~---~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSA---DEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCST---TTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccC---CccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3466999999999 9999999999976110 01111111221 1110 01334
Q ss_pred cCeEEEEEE-----------------------cCCCCcchhhHHHHhh---------------------ccCEEEEEEeC
Q 030848 66 SNSKLVFWD-----------------------LGGQPGLRSIWEKYYE---------------------EAHAVVFVIDA 101 (170)
Q Consensus 66 ~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~ 101 (170)
....+.+|| ++|++.+...+..+++ ++|++|+|+|+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 567899999 5566666665666665 79999999999
Q ss_pred CCc--ccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 102 ACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 102 ~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++ .+++.+..|+..+.......+.|+++|+||+|+.+....++..+..+. ...++++++||++|
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSN 239 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTT
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCC
Confidence 998 899999988888865433357899999999999653333344444431 13568999999986
No 122
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=2.1e-22 Score=158.44 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=102.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC-------------------------CCC--CcccCCcceeEEEEEec
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPP--DRIVPTVGLNIGRIEVS 66 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------------------------~~~--~~~~~~~~~~~~~~~~~ 66 (170)
.++.+||+++|.+++|||||+++|......... ... .....|+......++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 578899999999999999999999653111100 000 01123555556667778
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHH------HHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE------DSKTALEKVLRNEDLQGAPLLILANKQDLPD- 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~- 139 (170)
+..+.+|||||++.+......+++.+|++|+|+|+++..++. ...+..... ... ...|+++++||+|+.+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~--~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-HHT--TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-HHc--CCCcEEEEEECcCcccc
Confidence 899999999999999999999999999999999999864432 222222222 211 2357999999999976
Q ss_pred -cCCHHHHH----hHhCccccccceeEEEeeeccCC
Q 030848 140 -AVSADELA----RYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 140 -~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+...++.. +.+...+.....++++++||++|
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g 222 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSG 222 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecC
Confidence 22223333 33333334445789999999987
No 123
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=9e-21 Score=147.37 Aligned_cols=157 Identities=14% Similarity=0.106 Sum_probs=103.5
Q ss_pred hhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCC--------------CCCCc---------------ccCCcceeE
Q 030848 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LPPDR---------------IVPTVGLNI 60 (170)
Q Consensus 10 ~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------------~~~~~---------------~~~~~~~~~ 60 (170)
.....+..++|+++|++++|||||++++......... +.... ...|+....
T Consensus 17 ~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~ 96 (434)
T 1zun_B 17 GQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAY 96 (434)
T ss_dssp CSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEE
T ss_pred hhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeee
Confidence 3334466799999999999999999999763211110 00000 112444445
Q ss_pred EEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 61 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
..+...+..+.+|||||++.+...+..+++.+|++|+|+|+++....+ ..+++...... ...|+++++||+|+.+.
T Consensus 97 ~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 97 RYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp EEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred eEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCCcc
Confidence 566677889999999999999888888899999999999999865433 33333333221 23469999999999763
Q ss_pred CC------HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 141 VS------ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 141 ~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.. .+++.+.++..+.....++++++||++|
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g 208 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKG 208 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTC
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCC
Confidence 21 1223333332222234589999999987
No 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=1.4e-21 Score=142.39 Aligned_cols=137 Identities=22% Similarity=0.211 Sum_probs=94.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh------hHHHH
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKY 88 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~ 88 (170)
.+.++|+++|++|+|||||+|++.+...... . ....|.......+...+..+.+|||||...+.. ....+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~-~---~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~ 78 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVA-N---WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDY 78 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEE-E---CTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCccc-C---CCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHH
Confidence 4578999999999999999999987221111 0 112233444445667788999999999876643 22444
Q ss_pred h--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----CCHHHHHhHhCccccccceeEE
Q 030848 89 Y--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 89 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~ 162 (170)
+ ..+|++++|+|+++.++ ...++..+.. .+.|+++++||+|+.+. ....++.+. .++++
T Consensus 79 ~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~--------lg~~v 143 (258)
T 3a1s_A 79 LLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKH--------LGIPV 143 (258)
T ss_dssp HHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHH--------HCSCE
T ss_pred HhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHH--------cCCCE
Confidence 4 58999999999998643 3445555544 37899999999998652 122333332 23689
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+++||++|
T Consensus 144 i~~SA~~g 151 (258)
T 3a1s_A 144 VFTSSVTG 151 (258)
T ss_dssp EECCTTTC
T ss_pred EEEEeeCC
Confidence 99999986
No 125
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.86 E-value=3e-21 Score=148.76 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=101.4
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-------------CCcccCCc---ceeEEEEEecCeEEEEEEcC
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-------------PDRIVPTV---GLNIGRIEVSNSKLVFWDLG 76 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-------------~~~~~~~~---~~~~~~~~~~~~~~~i~D~~ 76 (170)
..++.++|+++|++++|||||++++.+......... ........ .............+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 456789999999999999999999976211110000 00000000 00000001223679999999
Q ss_pred CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC--ccc
Q 030848 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKK 154 (170)
Q Consensus 77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~--~~~ 154 (170)
|++.+......+++.+|++|+|+|++++.++....+++..+... ...|+++++||+|+.+.....+..+.+. ...
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887666666666555332 2358999999999986443332222222 111
Q ss_pred cccceeEEEeeeccCC
Q 030848 155 LDERVCMFEAVSGYDG 170 (170)
Q Consensus 155 ~~~~~~~~~~~Sa~~g 170 (170)
.....++++++||++|
T Consensus 161 ~~~~~~~ii~vSA~~g 176 (403)
T 3sjy_A 161 TWAENVPIIPVSALHK 176 (403)
T ss_dssp STTTTCCEEECBTTTT
T ss_pred hCCCCCEEEEEECCCC
Confidence 2234678999999986
No 126
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=3.5e-21 Score=149.74 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=102.2
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCC-------------------------CCCc--ccCCcceeEEEEEe
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-------------------------PPDR--IVPTVGLNIGRIEV 65 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~-------------------------~~~~--~~~~~~~~~~~~~~ 65 (170)
..+..++|+++|.+++|||||+++|.......... ...+ ...|+......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34678999999999999999999995532211110 0111 12345555556777
Q ss_pred cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccH------HHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcc
Q 030848 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF------EDSKTALEKVLRNEDLQGAP-LLILANKQDLP 138 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~ 138 (170)
.+..+.+|||||++.+...+..+++.+|++|+|+|+++.... ....+.+..... .+.| +++++||+|+.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDP 168 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCc
Confidence 888999999999999998888899999999999999876421 122222222222 2445 99999999996
Q ss_pred ccC----CH----HHHHhHhCcccccc-ceeEEEeeeccCC
Q 030848 139 DAV----SA----DELARYLDLKKLDE-RVCMFEAVSGYDG 170 (170)
Q Consensus 139 ~~~----~~----~~~~~~~~~~~~~~-~~~~~~~~Sa~~g 170 (170)
... .. +++.+.++..++.. ..++++++||++|
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G 209 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTG 209 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCC
Confidence 422 12 22333333233322 3679999999987
No 127
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.86 E-value=3.1e-22 Score=146.95 Aligned_cols=136 Identities=24% Similarity=0.322 Sum_probs=91.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch----------hhH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR----------SIW 85 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~ 85 (170)
++++|+++|.+|+|||||+|++.+...... .....|.......+...+..+.+|||||...+. ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~----~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~ 77 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVG----NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEE----ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccC----CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHH
Confidence 468999999999999999999987321111 111123334444566678899999999976654 122
Q ss_pred HHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC----CHHHHHhHhCccccccce
Q 030848 86 EKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV----SADELARYLDLKKLDERV 159 (170)
Q Consensus 86 ~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~ 159 (170)
..++ +.+|++++|+|+++.+.. ..+...+.. .+.|+++++||+|+.+.. ..+++.+.+ +
T Consensus 78 ~~~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g 142 (274)
T 3i8s_A 78 CHYILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARL--------G 142 (274)
T ss_dssp HHHHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHH--------T
T ss_pred HHHHhhcCCCEEEEEecCCChHHH---HHHHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhc--------C
Confidence 2332 689999999999875433 333333433 278999999999987532 233333332 3
Q ss_pred eEEEeeeccCC
Q 030848 160 CMFEAVSGYDG 170 (170)
Q Consensus 160 ~~~~~~Sa~~g 170 (170)
++++++||++|
T Consensus 143 ~~~i~~SA~~g 153 (274)
T 3i8s_A 143 CPVIPLVSTRG 153 (274)
T ss_dssp SCEEECCCGGG
T ss_pred CCEEEEEcCCC
Confidence 58999999986
No 128
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=1.4e-22 Score=147.36 Aligned_cols=134 Identities=23% Similarity=0.304 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh----------hHHH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------IWEK 87 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~ 87 (170)
.+|+++|.+|+|||||+|++.+...... .....|.......+...+..+.+|||||...+.. ....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~----~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG----NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE----ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc----CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHH
Confidence 4799999999999999999987321111 1112233344556777788999999999766543 4455
Q ss_pred Hh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC----CHHHHHhHhCccccccceeE
Q 030848 88 YY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV----SADELARYLDLKKLDERVCM 161 (170)
Q Consensus 88 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~ 161 (170)
++ +.+|++|+|+|+++.++. ..+...+.. .+.|+++++||+|+.+.. ..+.+.+.+ +++
T Consensus 78 ~~~~~~~d~vi~VvDas~~~~~---~~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~ 142 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLERH---LYLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCS 142 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHHHH---HHHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSC
T ss_pred HHhhCCCCEEEEEeeCCCchhH---HHHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCC
Confidence 66 789999999999985333 333333332 378999999999987632 233333332 468
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
++++||++|
T Consensus 143 vi~~SA~~g 151 (256)
T 3iby_A 143 VIPIQAHKN 151 (256)
T ss_dssp EEECBGGGT
T ss_pred EEEEECCCC
Confidence 999999986
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1.3e-21 Score=152.23 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=98.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC----------CcchhhH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLRSIW 85 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 85 (170)
..++|+++|.+|+|||||+|++.+........ ....|.......+...+..+.+|||||+ +.+....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~---~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN---VAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecC---CCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence 45899999999999999999998632111111 1111222223356667788999999996 3343333
Q ss_pred H-HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC--HHHHHhHhCccccccceeEE
Q 030848 86 E-KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--ADELARYLDLKKLDERVCMF 162 (170)
Q Consensus 86 ~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~ 162 (170)
. .+++.+|++|+|+|++++.+++.. .+...+.. .+.|+++++||+|+.+... .++..+.+.........+++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence 3 477899999999999998887765 45444433 4789999999999986433 34444444322222345789
Q ss_pred EeeeccCC
Q 030848 163 EAVSGYDG 170 (170)
Q Consensus 163 ~~~Sa~~g 170 (170)
+++||++|
T Consensus 326 ~~~SA~tg 333 (436)
T 2hjg_A 326 LFMSALTK 333 (436)
T ss_dssp EECCTTTC
T ss_pred EEEecccC
Confidence 99999987
No 130
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=2.5e-21 Score=150.47 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=99.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC---------------------------CCcccCCcceeEEEEEec
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---------------------------PDRIVPTVGLNIGRIEVS 66 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 66 (170)
.++.++|+++|+.++|||||++++........... ......|+......+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 46789999999999999999999975321111000 001123444444567777
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHH-------HHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS-------KTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+..+.+|||||++.+...+..+++.+|++|+|+|+++ .+++.. .+.+...... .-.|+++++||+|+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCC
Confidence 8899999999999999888899999999999999998 555532 2222222111 2346899999999976
Q ss_pred cC----C----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 140 AV----S----ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 140 ~~----~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.. . .+++.+.++..++....++++++||++|
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g 197 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSG 197 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccC
Confidence 32 1 2334444443333334589999999986
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.86 E-value=6e-21 Score=144.33 Aligned_cols=117 Identities=21% Similarity=0.376 Sum_probs=96.4
Q ss_pred CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCCC
Q 030848 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDL 123 (170)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 123 (170)
+|+++....+...+..+.+|||+|++.++..|..++++++++|+|+|+++ ..++++...|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 56777777788889999999999999999999999999999999999998 56799999999999887666
Q ss_pred CCCcEEEEeeCCCccc-----------------cCCHHHHHhHhCccc--c----ccceeEEEeeeccCC
Q 030848 124 QGAPLLILANKQDLPD-----------------AVSADELARYLDLKK--L----DERVCMFEAVSGYDG 170 (170)
Q Consensus 124 ~~~~ii~v~nK~D~~~-----------------~~~~~~~~~~~~~~~--~----~~~~~~~~~~Sa~~g 170 (170)
.+.|+++++||+|+.. +.+.++..+.+.... + ....+.+++|||++|
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~ 328 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 328 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence 7899999999999963 245666666664210 1 145789999999975
No 132
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.86 E-value=1.9e-21 Score=142.56 Aligned_cols=134 Identities=23% Similarity=0.277 Sum_probs=90.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch------hhHHHHhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEKYYE 90 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 90 (170)
.++|+++|++|+|||||+|++.+..... +. ....|.......+.. +..+.+|||||+..+. .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v-~~---~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV-GN---WPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC-CS---SSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc-cC---CCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh
Confidence 5799999999999999999998732111 11 111222222333444 6789999999988764 34455665
Q ss_pred --ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----CCHHHHHhHhCccccccceeEEEe
Q 030848 91 --EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 91 --~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
.+|++++|+|+++.+ ....|...+.. .+.|+++++||+|+... ...+++.+.+ ++++++
T Consensus 78 ~~~~d~vi~V~D~t~~e---~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~ 142 (272)
T 3b1v_A 78 SQRADSILNVVDATNLE---RNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVA 142 (272)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEE
T ss_pred cCCCCEEEEEecCCchH---hHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEE
Confidence 699999999998753 34445555544 47899999999998652 1223333322 358999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 143 ~SA~~g 148 (272)
T 3b1v_A 143 TSALKQ 148 (272)
T ss_dssp CBTTTT
T ss_pred EEccCC
Confidence 999986
No 133
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=1.2e-20 Score=140.97 Aligned_cols=119 Identities=20% Similarity=0.370 Sum_probs=97.4
Q ss_pred ccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCC----------CcccHHHHHHHHHHHHcCC
Q 030848 52 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNE 121 (170)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 121 (170)
..+|+++....++..+..+.+|||+|++.++..|..++++++++|+|+|++ +..++++...++..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 346788888888899999999999999999999999999999999999554 6778899999999998877
Q ss_pred CCCCCcEEEEeeCCCccc------------------cCCHHHHHhHhC-----ccccccceeEEEeeeccCC
Q 030848 122 DLQGAPLLILANKQDLPD------------------AVSADELARYLD-----LKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 122 ~~~~~~ii~v~nK~D~~~------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~g 170 (170)
...+.|+++++||+|+.+ ..+.++..+++. ........+.+++|||+.+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~ 302 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 302 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC
Confidence 767899999999999965 245666666643 1112346788999999863
No 134
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.85 E-value=3.7e-21 Score=150.63 Aligned_cols=144 Identities=18% Similarity=0.125 Sum_probs=83.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH--------
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE-------- 86 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------- 86 (170)
+..++|+++|.+|+|||||+|++.+...... ......|.......+...+..+.+|||||.+.+...+.
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v---s~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~ 307 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIV---SHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSR 307 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC---------------------CEEEEETTEEEEEEC--------------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCccc---CCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHH
Confidence 4568999999999999999999976211111 11111233333445777889999999999876554332
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.+++.+|++|+|+|++++.+++....+. .++... .+.|+++|+||+|+.+....+. +.+... ...+++++|
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vS 378 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIR-ELKAAH--PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGIS 378 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHH-HHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECB
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHH-HHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEE
Confidence 3568899999999999988875322222 222222 2789999999999987544322 112211 125799999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 379 Aktg 382 (476)
T 3gee_A 379 ALNG 382 (476)
T ss_dssp TTTT
T ss_pred ECCC
Confidence 9986
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.85 E-value=1.6e-21 Score=146.95 Aligned_cols=143 Identities=24% Similarity=0.310 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCC----cchhh---HHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQP----GLRSI---WEKYY 89 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~----~~~~~---~~~~~ 89 (170)
.+|+++|.+++|||||+|++.+........... |.......+...+ ..+.+|||||.. ....+ +...+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ft----Tl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFT----TLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSS----CCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCcc----ccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH
Confidence 368899999999999999997643322222222 3333334466654 789999999942 22223 33334
Q ss_pred hccCEEEEEEeCCC---cccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccC-CHHHHHhHhCccccccceeEEEe
Q 030848 90 EEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAV-SADELARYLDLKKLDERVCMFEA 164 (170)
Q Consensus 90 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
.+++++|+|+|+++ ..+++....+..++..+.. ..+.|+++|+||+|+.... ..+++.+.+. ..+++++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~------~~~~v~~ 308 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFP 308 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCC
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh------cCCCEEE
Confidence 56999999999998 7788888888888866532 3578999999999997532 1222222222 1167999
Q ss_pred eeccCC
Q 030848 165 VSGYDG 170 (170)
Q Consensus 165 ~Sa~~g 170 (170)
+||++|
T Consensus 309 iSA~tg 314 (342)
T 1lnz_A 309 ISAVTR 314 (342)
T ss_dssp CSSCCS
T ss_pred EECCCC
Confidence 999976
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=8.8e-21 Score=148.26 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=99.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcchhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSI 84 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 84 (170)
...++|+++|.+|+|||||+|++.+.......... ..|.......+...+..+.+||||| ++.+...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~---gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA---GTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCC---CeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH
Confidence 35689999999999999999999862211111111 1122222234667778999999999 5666655
Q ss_pred HH-HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeE
Q 030848 85 WE-KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCM 161 (170)
Q Consensus 85 ~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 161 (170)
.. .+++.+|++|+|+|+++..+.+ ...++..+.. .+.|+++|+||+|+.+. ...++..+.++........++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence 44 4779999999999998765433 3334444433 46899999999999863 344566666553333334578
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
++++||++|
T Consensus 345 ~~~~SA~~g 353 (456)
T 4dcu_A 345 ILFMSALTK 353 (456)
T ss_dssp EEECCTTTC
T ss_pred EEEEcCCCC
Confidence 999999987
No 137
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.85 E-value=4.5e-21 Score=140.54 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=94.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh------hHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYY 89 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~ 89 (170)
+.++|+++|++|+|||||+|++.+...... .....+.......+...+..+.+|||||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 77 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVG----NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFI 77 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEE----ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccC----CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhh
Confidence 468999999999999999999987322111 1111233344445667788899999999776644 444555
Q ss_pred --hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccceeEEE
Q 030848 90 --EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 90 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
..+|++++|+|+++. +....++..+... ...|+++++||+|+.+ .....++.+.+ .++++
T Consensus 78 ~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~ 143 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVI 143 (271)
T ss_dssp HTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEE
T ss_pred hccCCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEE
Confidence 689999999999875 3444555555543 2389999999999864 22333333333 35799
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||++|
T Consensus 144 ~~Sa~~g 150 (271)
T 3k53_A 144 PTNAKKG 150 (271)
T ss_dssp ECBGGGT
T ss_pred EEEeCCC
Confidence 9999976
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=1.7e-20 Score=147.09 Aligned_cols=139 Identities=23% Similarity=0.282 Sum_probs=98.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-cch--------hhHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWE 86 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~ 86 (170)
..++|+++|.+|+|||||+|++.+........ ....|.......+...+..+.+|||||.+ +.. ....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~---~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~ 318 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTD---IPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL 318 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCC---SSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCC---CCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH
Confidence 44899999999999999999998742221111 11123333344577788999999999977 442 2234
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.+++.+|++|+|+|++++.+++.. ..+..+ .+.|+++|+||+|+.+....+++.+.+. ..++++++|
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iS 385 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKIS 385 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEE
T ss_pred HHhhcccEEEEEecCCCCCCHHHH-HHHHHh------cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEE
Confidence 577999999999999998877653 222222 3679999999999987655555554432 235689999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 386 Aktg 389 (482)
T 1xzp_A 386 ALKG 389 (482)
T ss_dssp GGGT
T ss_pred CCCC
Confidence 9986
No 139
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=1.7e-20 Score=140.74 Aligned_cols=88 Identities=30% Similarity=0.476 Sum_probs=79.6
Q ss_pred ccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCC----------CcccHHHHHHHHHHHHcCC
Q 030848 52 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNE 121 (170)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 121 (170)
..+|+++....+...+..+.+||++|++.++..|..++++++++|+|+|++ +..++.+...++..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345788888888889999999999999999999999999999999999998 7788999999999998877
Q ss_pred CCCCCcEEEEeeCCCccc
Q 030848 122 DLQGAPLLILANKQDLPD 139 (170)
Q Consensus 122 ~~~~~~ii~v~nK~D~~~ 139 (170)
...+.|+++++||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 767899999999999864
No 140
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=1.6e-20 Score=144.84 Aligned_cols=153 Identities=18% Similarity=0.104 Sum_probs=103.4
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--CCCCC-----------cccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 79 (170)
..+..++|+++|++++|||||++++.+...... ..... ....|+......+...+..+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 467889999999999999999999976321111 00000 11224444444566667899999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccc-CCH----HHHHhHhCcc
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDA-VSA----DELARYLDLK 153 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~-~~~----~~~~~~~~~~ 153 (170)
.+......+++.+|++|+|+|+++.... ...+++..+.. .+.| +++++||+|+.+. ... +++.+.++..
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 9988888889999999999999887543 34455544433 3566 8999999999752 111 2333444433
Q ss_pred ccccceeEEEeeeccCC
Q 030848 154 KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 154 ~~~~~~~~~~~~Sa~~g 170 (170)
.+....++++++||++|
T Consensus 162 ~~~~~~~~~i~~SA~~g 178 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLA 178 (405)
T ss_dssp TSCTTTSCEEECCHHHH
T ss_pred cccccCCCEEEccHHHh
Confidence 33334578999999875
No 141
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.84 E-value=1.7e-20 Score=142.41 Aligned_cols=145 Identities=21% Similarity=0.279 Sum_probs=102.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch---------hhH
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR---------SIW 85 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~ 85 (170)
...++++++|.+|+|||||+|++.+....... ....|.......+...+..+.+|||||..... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS----YPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC----CTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----CCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHH
Confidence 45689999999999999999999763211111 11234444455566677889999999964321 122
Q ss_pred HHHhhccCEEEEEEeCCCcc--cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEE
Q 030848 86 EKYYEEAHAVVFVIDAACPS--RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
..+...+|++++|+|++++. +++....++..+..... +.|+++|+||+|+.+....++..+.+. ...++++
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~ 313 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPI 313 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCE
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeE
Confidence 23445699999999998877 67777778877765432 789999999999976544444444443 3456799
Q ss_pred eeeccCC
Q 030848 164 AVSGYDG 170 (170)
Q Consensus 164 ~~Sa~~g 170 (170)
++||++|
T Consensus 314 ~iSA~~g 320 (357)
T 2e87_A 314 KISALKG 320 (357)
T ss_dssp ECBTTTT
T ss_pred EEeCCCC
Confidence 9999986
No 142
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.6e-21 Score=154.82 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=102.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCC--------------CCC-------------cccCCcceeEEEEEec
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--------------PPD-------------RIVPTVGLNIGRIEVS 66 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--------------~~~-------------~~~~~~~~~~~~~~~~ 66 (170)
.++.++|+++|++++|||||+++|.......... ... ....|+......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3567999999999999999999997532111110 000 0122455555567778
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcc---cH---HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RF---EDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
+..+.+|||||++.+...+..+++.+|++|+|+|+++.. .+ .......... ... ...|+++++||+|+.+.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCEEEEEEECTTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCeEEEEEecccccch
Confidence 889999999999999988888899999999999998642 00 1112222222 221 23569999999999762
Q ss_pred --CC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 141 --VS----ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 141 --~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.. ..++.+.+...+.....++++++||++|
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG 356 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSG 356 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccC
Confidence 22 2233333333334445689999999987
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=2.1e-20 Score=144.25 Aligned_cols=150 Identities=18% Similarity=0.211 Sum_probs=92.8
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEe---------------c--------C
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV---------------S--------N 67 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~--------~ 67 (170)
.+++.++|+++|+.++|||||++++.+...+ .......+ |+...+..... . .
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~---~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~ 80 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTD---RHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFL 80 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCC---C-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccc---cCcccccCCcEEEecccccccccccccccccccccccccCcccccc
Confidence 3567899999999999999999999753211 11122222 44443322211 0 1
Q ss_pred eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----H
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----A 143 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~ 143 (170)
..+.+|||||++.+...+...+..+|++|+|+|++++.......+.+..+.. . ...|+++++||+|+.+... .
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l--~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-L--GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-T--TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-c--CCCeEEEEEEccCCCCHHHHHHHH
Confidence 6799999999998888777778889999999999965422223333322221 1 2358999999999986432 3
Q ss_pred HHHHhHhCccccccceeEEEeeeccCC
Q 030848 144 DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++.+.++.. ....++++++||++|
T Consensus 158 ~~i~~~l~~~--~~~~~~~i~vSA~~g 182 (408)
T 1s0u_A 158 EQIKEFVKGT--IAENAPIIPISAHHE 182 (408)
T ss_dssp HHHHHHHTTS--TTTTCCEEEC-----
T ss_pred HHHHHHHhhc--CCCCCeEEEeeCCCC
Confidence 4555555421 134678999999986
No 144
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=1.1e-20 Score=145.44 Aligned_cols=151 Identities=14% Similarity=0.049 Sum_probs=101.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCC-CCCC---------C--cccCCcceeEEEEEecCeEEEEEEcCCCCcch
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GLPP---------D--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 82 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-~~~~---------~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 82 (170)
++.++|+++|++++|||||++++.+...... ..+. . ....|+......+...+..+.+|||||++.+.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 4679999999999999999999976321110 0000 0 11123443333455567899999999999988
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccc-CC----HHHHHhHhCccccc
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDA-VS----ADELARYLDLKKLD 156 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~-~~----~~~~~~~~~~~~~~ 156 (170)
.....+++.+|++|+|+|+++....+ ..+.+..+.. .+.| +++++||+|+.+. .. .+++.+.++...+.
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 88888899999999999999865433 3333333322 3566 7899999999752 11 12444444433443
Q ss_pred cceeEEEeeeccCC
Q 030848 157 ERVCMFEAVSGYDG 170 (170)
Q Consensus 157 ~~~~~~~~~Sa~~g 170 (170)
...++++++||++|
T Consensus 156 ~~~~~~i~~SA~~g 169 (397)
T 1d2e_A 156 GEETPIIVGSALCA 169 (397)
T ss_dssp TTTSCEEECCHHHH
T ss_pred cccCcEEEeehhhc
Confidence 44578999999874
No 145
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=1.3e-20 Score=147.22 Aligned_cols=153 Identities=16% Similarity=0.264 Sum_probs=102.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CCCC-------C------cccCCcceeEEEEEec
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP-------D------RIVPTVGLNIGRIEVS 66 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~~~-------~------~~~~~~~~~~~~~~~~ 66 (170)
.++.++|+++|.+++|||||+++|........ +... + ....|+......+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 45779999999999999999999976321110 0000 0 1223555555567778
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc---HH---HHHHHHHHHHcCCCCCCC-cEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---FE---DSKTALEKVLRNEDLQGA-PLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~-~ii~v~nK~D~~~ 139 (170)
+..+.+|||||++.+......+++.+|++|+|+|+++... |+ ...+.+..... .+. ++++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 8899999999999999888889999999999999986521 11 22232222222 244 4999999999974
Q ss_pred --cCCH----HHHHhHhCccccccceeEEEeeeccCC
Q 030848 140 --AVSA----DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 140 --~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+... +++.+.++..++....++++++||++|
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g 196 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNG 196 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccC
Confidence 1111 233333333333334578999999986
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.84 E-value=3.2e-20 Score=143.35 Aligned_cols=150 Identities=18% Similarity=0.246 Sum_probs=98.1
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEec-----------------------C
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVS-----------------------N 67 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----------------------~ 67 (170)
.+++.++|+++|+.++|||||++++.+...+ .......+ |+...+...... .
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~---~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~ 82 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTD---THSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFV 82 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC-----CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccc---cChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccc
Confidence 3567899999999999999999999753211 11222222 444443322220 1
Q ss_pred eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----H
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----A 143 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~ 143 (170)
..+.+|||||++.+.......+..+|++|+|+|+++........+.+..+... ...|+++++||+|+.+... .
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHH
Confidence 67999999999998888888888999999999999653222222222222111 2357999999999976432 2
Q ss_pred HHHHhHhCccccccceeEEEeeeccCC
Q 030848 144 DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++.+.+... ....++++++||++|
T Consensus 160 ~~i~~~l~~~--~~~~~~~i~vSA~~g 184 (410)
T 1kk1_A 160 RQIKEFIEGT--VAENAPIIPISALHG 184 (410)
T ss_dssp HHHHHHHTTS--TTTTCCEEECBTTTT
T ss_pred HHHHHHHHhc--CcCCCeEEEeeCCCC
Confidence 3344444311 124678999999986
No 147
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=2.8e-21 Score=151.38 Aligned_cols=155 Identities=24% Similarity=0.314 Sum_probs=88.3
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CC-----------CC--CcccCCcceeEEEEE
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-----------PP--DRIVPTVGLNIGRIE 64 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~-----------~~--~~~~~~~~~~~~~~~ 64 (170)
...++.++|+++|+.++|||||+++|........ +. .. .....|+......+.
T Consensus 38 ~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~ 117 (467)
T 1r5b_A 38 MYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE 117 (467)
T ss_dssp HSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE
T ss_pred hcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence 3457789999999999999999999964221110 00 00 012335555555667
Q ss_pred ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcc---cHH---HHHHHHHHHHcCCCCCCCc-EEEEeeCCCc
Q 030848 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RFE---DSKTALEKVLRNEDLQGAP-LLILANKQDL 137 (170)
Q Consensus 65 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~ 137 (170)
..+..+.+|||||++.+...+..+++.+|++|+|+|+++.. +|+ ...+.+..... .+.| +++++||+|+
T Consensus 118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDE 193 (467)
T ss_dssp CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccC
Confidence 77889999999999999888888899999999999999762 121 11222222211 3555 9999999999
Q ss_pred cccC-CH-------HHHHhHhCcc-ccc-cceeEEEeeeccCC
Q 030848 138 PDAV-SA-------DELARYLDLK-KLD-ERVCMFEAVSGYDG 170 (170)
Q Consensus 138 ~~~~-~~-------~~~~~~~~~~-~~~-~~~~~~~~~Sa~~g 170 (170)
.+.. +. +++.+.+... ++. ...++++++||++|
T Consensus 194 ~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g 236 (467)
T 1r5b_A 194 PSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTG 236 (467)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTT
T ss_pred CCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccc
Confidence 6522 11 2333333322 222 23689999999986
No 148
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.83 E-value=9.5e-20 Score=138.22 Aligned_cols=117 Identities=19% Similarity=0.410 Sum_probs=87.9
Q ss_pred CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCCC
Q 030848 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDL 123 (170)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 123 (170)
+|+++....+...+..+.+|||+|++.++..|..++++++++|+|+|+++ ..++++...++..+......
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 46677777788889999999999999999999999999999999999998 77899999999999887666
Q ss_pred CCCcEEEEeeCCCccc------------------cCCHHHHHhHhC-----ccccc-cceeEEEeeeccCC
Q 030848 124 QGAPLLILANKQDLPD------------------AVSADELARYLD-----LKKLD-ERVCMFEAVSGYDG 170 (170)
Q Consensus 124 ~~~~ii~v~nK~D~~~------------------~~~~~~~~~~~~-----~~~~~-~~~~~~~~~Sa~~g 170 (170)
.+.|+++++||+|+.. ..+.++..+++. ..... ...+.+++|||++|
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~ 337 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT 337 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc
Confidence 7899999999999963 155666666552 11111 35678999999975
No 149
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.83 E-value=8.8e-21 Score=146.40 Aligned_cols=142 Identities=14% Similarity=0.145 Sum_probs=95.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCcchh-------hH
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGLRS-------IW 85 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~~~~-------~~ 85 (170)
....++|+++|..|+|||||+|++.+..... .......|.......+...+. .+.+|||||++.+.. ..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~---~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSI---VSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC----------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCc---cCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH
Confidence 3467899999999999999999997621110 111222344444555666555 899999999775532 24
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
..+++.+|++|+|+|++.. .....|+..+... +.|+++|+||+|+.+....+...+..+ ...++++++
T Consensus 108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~l~~-----~~g~~v~~v 175 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGLYES-----RYEAKVLLV 175 (423)
T ss_dssp HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHHSSC-----CTTCCCCCC
T ss_pred HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHHHHH-----HcCCCEEEE
Confidence 5577899999999998332 3345555555443 789999999999988665544444433 345689999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 176 SAktg 180 (423)
T 3qq5_A 176 SALQK 180 (423)
T ss_dssp SSCCT
T ss_pred ECCCC
Confidence 99986
No 150
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=132.56 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=77.4
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-----------cc
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----------GL 81 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~ 81 (170)
.....++|+++|.+|+|||||+|++.+... ..........+.......+...+..+.+|||||.. .+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKV--FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCC--SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCc--CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence 345779999999999999999999987222 11111111234455555677788899999999932 33
Q ss_pred hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccC
Q 030848 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~ 141 (170)
...+..+++.+|++|+|+|++..... ...++..+..... ....|+++|+||+|+.+..
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 44445556678999999999754442 2222333322111 0235899999999987643
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=5.9e-20 Score=142.96 Aligned_cols=139 Identities=23% Similarity=0.219 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc---------chhhHHHH
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKY 88 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 88 (170)
.+|+++|.+|+|||||+|++.+...... ......|.......+.+.+..+.+|||||.+. +...+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v---~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV---EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee---cCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHH
Confidence 4799999999999999999976221111 11111223333455677888999999999654 34456778
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHH-HhHhCccccccceeEEEeeec
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLKKLDERVCMFEAVSG 167 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa 167 (170)
++.+|++|+|+|++++.+..+ .++..++.. .+.|+++++||+|+.+.. ..+. .+... .+. .+++++||
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~-lg~----~~~~~iSA 147 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS-LGF----GEPIPVSA 147 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG-GSS----CSCEECBT
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh-cCC----CCEEEEec
Confidence 899999999999987655432 222233222 367999999999986431 1222 22221 111 14789999
Q ss_pred cCC
Q 030848 168 YDG 170 (170)
Q Consensus 168 ~~g 170 (170)
++|
T Consensus 148 ~~g 150 (439)
T 1mky_A 148 EHN 150 (439)
T ss_dssp TTT
T ss_pred cCC
Confidence 987
No 152
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=3.6e-19 Score=128.82 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=79.7
Q ss_pred HhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC--------Cc
Q 030848 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PG 80 (170)
Q Consensus 9 ~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~ 80 (170)
+........++|+++|.+|+|||||+|++.+...... .......|...........+..+.+|||||. +.
T Consensus 13 ~~~~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~--~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~ 90 (247)
T 3lxw_A 13 NLYFQGESTRRLILVGRTGAGKSATGNSILGQRRFFS--RLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDP 90 (247)
T ss_dssp -------CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHST
T ss_pred CccccCCCceEEEEECCCCCcHHHHHHHHhCCCCccc--cCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHH
Confidence 3444456789999999999999999999987222111 1111123445555567788899999999995 44
Q ss_pred chhhHHHHh----hccCEEEEEEeCCCcccH-HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 81 LRSIWEKYY----EEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 81 ~~~~~~~~~----~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
+......++ +.+|++|+|+|++..... .....++...... ...+.|+++++||+|+.+.
T Consensus 91 ~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 91 GCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp TSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC
Confidence 433333333 899999999999853221 2223333333221 1136799999999999763
No 153
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.81 E-value=3.7e-20 Score=144.52 Aligned_cols=139 Identities=23% Similarity=0.240 Sum_probs=85.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHH-------
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK------- 87 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~------- 87 (170)
+..++|+++|++|+|||||+|++.+.......... ..|.......+...+..+.+|||||..+....+..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~---gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~ 298 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP---GTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSR 298 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCT---TCCHHHHHHEEEETTEEEEECC--------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCC---CeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHh
Confidence 35689999999999999999999874322121111 11222223356678889999999997655433332
Q ss_pred -HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848 88 -YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 88 -~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
+++.+|++|+|+|++++.+... ..++..+ .+.|+++|+||+|+.+..... ..+ .. ....+++++|
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~--~~-~~~~~~i~iS 364 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLE--YP-ENITQIVHTA 364 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCC--CC-TTCCCEEEEB
T ss_pred hhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHH--Hh-ccCCcEEEEE
Confidence 4678999999999998766544 3344433 236999999999997643222 111 01 1346799999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 365 Aktg 368 (462)
T 3geh_A 365 AAQK 368 (462)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9986
No 154
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=8.4e-22 Score=158.03 Aligned_cols=155 Identities=16% Similarity=0.167 Sum_probs=83.3
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCC-------------------------CCC--cccCCcceeEEEEE
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-------------------------PPD--RIVPTVGLNIGRIE 64 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~-------------------------~~~--~~~~~~~~~~~~~~ 64 (170)
...++.++|+++|++++|||||+++|.......... ... ....|+......+.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 345678999999999999999999996432211111 000 11123344444555
Q ss_pred ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcc---c---HHHHHHHHHHHHcCCCCCCC-cEEEEeeCCCc
Q 030848 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---R---FEDSKTALEKVLRNEDLQGA-PLLILANKQDL 137 (170)
Q Consensus 65 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~ii~v~nK~D~ 137 (170)
..+..+.||||||++.+.......++.+|++|+|+|+++.. . .......+..+.. .+. ++++++||+|+
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl 327 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDL 327 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccc
Confidence 66788999999999998877777789999999999998642 0 1111222222222 234 49999999999
Q ss_pred ccc--CC----HHHHHhHh-CccccccceeEEEeeeccCC
Q 030848 138 PDA--VS----ADELARYL-DLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 138 ~~~--~~----~~~~~~~~-~~~~~~~~~~~~~~~Sa~~g 170 (170)
.+. .. ..++.+.+ ...++....++++++||++|
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G 367 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISG 367 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccC
Confidence 752 22 23444444 43455556789999999987
No 155
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.81 E-value=8.7e-20 Score=143.35 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=96.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccC-CCCCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 91 (170)
.+.++|+++|+.++|||||++++.+..... .+.... ....|+......+...+..+.+|||||++.+...+..+++.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 457899999999999999999997632100 000111 12234455455666788899999999999998888888999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHH----hHhCcc-ccccceeEEEeee
Q 030848 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELA----RYLDLK-KLDERVCMFEAVS 166 (170)
Q Consensus 92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~S 166 (170)
+|++|+|+|+++...-+ ..+.+..+.. .+.|+++++||+|+.++...++.. +.++.. . ...++++++|
T Consensus 97 aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~--~~~~~ii~vS 169 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQ-TGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHN--LKNSSIIPIS 169 (482)
T ss_dssp CCEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSS--GGGCCEEECC
T ss_pred CCEEEEEEecCCCccHH-HHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcc--cccceEEEEE
Confidence 99999999998743222 2222222222 357789999999998643333333 333211 1 2257899999
Q ss_pred ccCC
Q 030848 167 GYDG 170 (170)
Q Consensus 167 a~~g 170 (170)
|++|
T Consensus 170 A~~g 173 (482)
T 1wb1_A 170 AKTG 173 (482)
T ss_dssp TTTC
T ss_pred CcCC
Confidence 9986
No 156
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=5.2e-20 Score=143.15 Aligned_cols=138 Identities=20% Similarity=0.242 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC--------cchhhHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP--------GLRSIWEKYY 89 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 89 (170)
.+|+++|.+|+|||||+|++.+...... ......|.......+.+.+..+.+|||||.+ .+...+..++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v---~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV---EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 6899999999999999999976221111 1111122233333455567889999999975 4566677788
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
+.+|++|+|+|++++.+..+ .++..++.. .+.|+++++||+|+.+.. .+..+.+. . ...+++++||++
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~~-l----g~~~~~~iSA~~ 148 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS-L----GFGEPYPISGTH 148 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CCCSSGG-G----SSCCCEECBTTT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--hhHHHHHH-c----CCCCeEEEeCcC
Confidence 99999999999998766543 334444443 578999999999986531 11111111 1 112688999998
Q ss_pred C
Q 030848 170 G 170 (170)
Q Consensus 170 g 170 (170)
|
T Consensus 149 g 149 (436)
T 2hjg_A 149 G 149 (436)
T ss_dssp T
T ss_pred C
Confidence 6
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.80 E-value=2.6e-19 Score=136.38 Aligned_cols=130 Identities=13% Similarity=0.084 Sum_probs=95.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 98 (170)
+|+++|++++|||||++++. ....|++.....+...+..+.+|||||++++.......++.+|++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence 89999999999999999996 333455666666777788999999999999988788888999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHcCCCCCCCcE-EEEee-CCCccccCCH----HHHHhHhCccccccceeEEEe--eeccC
Q 030848 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILAN-KQDLPDAVSA----DELARYLDLKKLDERVCMFEA--VSGYD 169 (170)
Q Consensus 99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~v~n-K~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~ 169 (170)
+| +. .......+++..+.. .+.|. ++++| |+|+ ++... +++.+.++... ...+++++ +||++
T Consensus 91 vd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~--~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 91 IP-PQ-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV--LQDWECISLNTNKSA 160 (370)
T ss_dssp EC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST--TTTCEEEECCCCTTS
T ss_pred Ec-CC-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC--CCceEEEeccccccc
Confidence 99 53 344555555554433 24566 88888 9999 53222 33444443221 23579999 99998
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=1.9e-19 Score=142.62 Aligned_cols=121 Identities=20% Similarity=0.165 Sum_probs=88.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccC------C-----CCCCC-------cccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV------E-----GLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~------~-----~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
...+|+++|++|+|||||++++....... . ..... ....++......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 56799999999999999999995211100 0 00000 012244445556778889999999999
Q ss_pred CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
++.+...+..+++.+|++|+|+|+++....+... .+..+.. .+.|+++++||+|+.+..
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCSC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCcccc
Confidence 9999999999999999999999999876655543 3333333 478999999999997643
No 159
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.80 E-value=1.1e-18 Score=139.73 Aligned_cols=148 Identities=20% Similarity=0.186 Sum_probs=95.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CCc----------ccCCcceeEEEEEec-----CeEEEEEEcCCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDR----------IVPTVGLNIGRIEVS-----NSKLVFWDLGGQ 78 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~-----~~~~~i~D~~G~ 78 (170)
.+..+|+++|+.++|||||++++........... ... ...|+......+.+. ...+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 3567899999999999999999975322111100 000 111222222223332 367999999999
Q ss_pred CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC-cccccc
Q 030848 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD-LKKLDE 157 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~-~~~~~~ 157 (170)
+.+...+..+++.+|++|+|+|+++..+.+....|.... . .+.|+++++||+|+++.. .++..+.+. ..+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~-- 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGL-- 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCC--
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhhCC--
Confidence 999988889999999999999999987776655554433 2 478999999999998754 333323232 1112
Q ss_pred ceeEEEeeeccCC
Q 030848 158 RVCMFEAVSGYDG 170 (170)
Q Consensus 158 ~~~~~~~~Sa~~g 170 (170)
...+++++||++|
T Consensus 156 ~~~~vi~vSAktg 168 (600)
T 2ywe_A 156 DPEEAILASAKEG 168 (600)
T ss_dssp CGGGCEECBTTTT
T ss_pred CcccEEEEEeecC
Confidence 2234899999986
No 160
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=2.2e-19 Score=131.72 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=82.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC--CCCcccCCcceeEEEEEec--C--eEEEEEEcCCCC-------cc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--PPDRIVPTVGLNIGRIEVS--N--SKLVFWDLGGQP-------GL 81 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~--~~~~i~D~~G~~-------~~ 81 (170)
...++|+++|.+|+|||||+|++.+........ ......+|++......... + ..+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 457899999999999999999986521111110 0111245566555544432 2 489999999962 22
Q ss_pred hhhH-------HHHhhc-------------cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 82 RSIW-------EKYYEE-------------AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 82 ~~~~-------~~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
.... ..+++. +|+++++++.+..........++..+.. +.|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHH
Confidence 3322 444443 7899999977653333333334444422 78999999999997544
Q ss_pred CHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 142 SADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
......+.+. ..+....++++++||++|
T Consensus 161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~ 188 (274)
T 3t5d_A 161 ECQQFKKQIM-KEIQEHKIKIYEFPETDD 188 (274)
T ss_dssp HHHHHHHHHH-HHHHHTTCCCCCC-----
T ss_pred HHHHHHHHHH-HHHHHcCCeEEcCCCCCC
Confidence 3333322222 111134566777887654
No 161
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.80 E-value=8.9e-19 Score=127.45 Aligned_cols=123 Identities=12% Similarity=0.159 Sum_probs=75.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-----------h
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-----------R 82 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----------~ 82 (170)
....++|+++|.+|+|||||+|++.+........ .....|.......+...+..+.+|||||.... .
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL--GSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT--TSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC--CCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 4467899999999999999999998622111111 11112334444456677889999999995443 2
Q ss_pred hhHHHHhhccCEEEEEEeCCCcccH-HHHHHHHHHHHcCCCCCCCcEEEEee-CCCcccc
Q 030848 83 SIWEKYYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILAN-KQDLPDA 140 (170)
Q Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~n-K~D~~~~ 140 (170)
.....+++.+|++|+|+|++..... .....++..+.... ...|.++++| |+|+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc
Confidence 2233466889999999999863222 22223333332211 1345666665 9999753
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.80 E-value=1.2e-19 Score=145.35 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=78.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----------------ecCeEEEEEEcCCCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQP 79 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~ 79 (170)
+.++|+++|++++|||||++++.+.. ..........++++......+ +....+.+|||||++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~--v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA--VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH--HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc--CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 46799999999999999999997632 111111122233333322211 112259999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCC---cccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
.+...+..+++.+|++|+|+|+++ +.+++.. ..+.. .+.|+++++||+|+.+
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l----~~l~~----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEAL----NILRM----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH----HHHHH----TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH----HHHHH----cCCeEEEEeccccccc
Confidence 998888888899999999999998 3343332 22222 4789999999999975
No 163
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=4.2e-19 Score=138.20 Aligned_cols=147 Identities=22% Similarity=0.218 Sum_probs=91.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh-----------
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI----------- 84 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 84 (170)
..++++++|++|+|||||+|++.+.........+. .|.......+...+..+.+|||||.+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~g---tT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG---TTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---------CCEEEEETTEEEEESSCSCC-----------CCSCCH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCC---CcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHH
Confidence 34899999999999999999998732211111111 1112222346677788999999996432211
Q ss_pred -HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHHHHHhHhCccccccceeE
Q 030848 85 -WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELARYLDLKKLDERVCM 161 (170)
Q Consensus 85 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 161 (170)
...+++.+|++++|+|+++..+.+.. . +...... .+.|+++++||+|+.+.. ..++..+.+..........+
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~-i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-R-MAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-H-HHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCc
Confidence 13466889999999999987665542 2 2222222 478999999999997632 34444433332222234568
Q ss_pred EEeeeccCC
Q 030848 162 FEAVSGYDG 170 (170)
Q Consensus 162 ~~~~Sa~~g 170 (170)
++++||++|
T Consensus 331 ~~~~SA~~g 339 (439)
T 1mky_A 331 LIFTSADKG 339 (439)
T ss_dssp EEECBTTTT
T ss_pred EEEEECCCC
Confidence 999999987
No 164
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.80 E-value=7.5e-19 Score=140.75 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=92.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CCc----------ccCCcceeEEEEEec-----CeEEEEEEcCCCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDR----------IVPTVGLNIGRIEVS-----NSKLVFWDLGGQP 79 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~-----~~~~~i~D~~G~~ 79 (170)
+..+|+++|+.++|||||++++........... ... ...|+......+.+. +..+.+|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 457899999999999999999976322111100 001 111222222233332 3689999999999
Q ss_pred cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC-ccccccc
Q 030848 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD-LKKLDER 158 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~-~~~~~~~ 158 (170)
.+...+..+++.+|++|+|+|+++..+.+....|.... . .+.|+++++||+|+++.. .++..+.+. ... ..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg--~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVG--ID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTC--CC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHhC--CC
Confidence 99999999999999999999999887776655554443 2 367999999999998754 332222222 111 12
Q ss_pred eeEEEeeeccCC
Q 030848 159 VCMFEAVSGYDG 170 (170)
Q Consensus 159 ~~~~~~~Sa~~g 170 (170)
..+++++||++|
T Consensus 155 ~~~vi~vSAktg 166 (599)
T 3cb4_D 155 ATDAVRCSAKTG 166 (599)
T ss_dssp CTTCEEECTTTC
T ss_pred cceEEEeecccC
Confidence 234899999986
No 165
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.80 E-value=5.2e-19 Score=135.36 Aligned_cols=85 Identities=24% Similarity=0.506 Sum_probs=76.4
Q ss_pred CcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCCCC
Q 030848 55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDLQ 124 (170)
Q Consensus 55 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 124 (170)
|+++....+.+.+..+.+|||+|++.++..|..++++++++|+|+|+++ ..++++...|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5666666777788999999999999999999999999999999999998 889999999999998876667
Q ss_pred CCcEEEEeeCCCccc
Q 030848 125 GAPLLILANKQDLPD 139 (170)
Q Consensus 125 ~~~ii~v~nK~D~~~ 139 (170)
+.|+++++||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 899999999999854
No 166
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=2e-18 Score=125.84 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=81.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhh----
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE---- 90 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---- 90 (170)
.+.++|+++|.+|+|||||+|++.+...... ......+.......+...+..+.+|||||++++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV---SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC---CSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc---CCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHH
Confidence 4689999999999999999999987221111 111222444445567778889999999998766433333322
Q ss_pred -----ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCccc
Q 030848 91 -----EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPD 139 (170)
Q Consensus 91 -----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~ 139 (170)
.+|++|+|++++..........++..+...... ...|+++++||+|+.+
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999988755323334555555433221 1248999999999953
No 167
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.80 E-value=1.5e-20 Score=148.58 Aligned_cols=146 Identities=21% Similarity=0.210 Sum_probs=95.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 94 (170)
...+|+++|++++|||||+++|.+...... .... .|.......+.. .+..+.+|||||++.+..++..+++.+|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~g--iT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~ 78 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGG--ITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDI 78 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCC--BCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCc--eeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCE
Confidence 457899999999999999999975221111 1111 111221222333 35679999999999999988888999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+|+|+|+++....+.. ..+..... .+.|+++++||+|+++... ..++.+.-.........++++++||++|
T Consensus 79 vILVVDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 79 VILVVAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp CEEECBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 9999999987665443 33333322 4679999999999975321 2222222111111123579999999987
No 168
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.80 E-value=4.8e-19 Score=133.93 Aligned_cols=74 Identities=24% Similarity=0.454 Sum_probs=65.4
Q ss_pred cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCC----------CcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~ 135 (170)
....+.+|||+|++.++..|..++++++++|+|+|++ +..++++...|+..+......++.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 788999999999999876555789999999999
Q ss_pred Cccc
Q 030848 136 DLPD 139 (170)
Q Consensus 136 D~~~ 139 (170)
|+..
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9854
No 169
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.79 E-value=5.8e-19 Score=131.16 Aligned_cols=143 Identities=18% Similarity=0.195 Sum_probs=88.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-cch--------hhHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWE 86 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~ 86 (170)
+..+|+++|++|+|||||+|++.+.........+ ..|.......+...+.++.+|||||.. ... ....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~---~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA---QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS---SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC---CcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 4458999999999999999999873221111111 112222223456678899999999987 322 2223
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
.+++.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+.. .....+..+.+... ....+++++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~---~~~~~~i~i 154 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQ---MNFLDIVPI 154 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTT---SCCSEEEEC
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHh---cCcCceEEE
Confidence 45678999999999976 22222333333332 4789999999999976 22222222222211 112378999
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 155 SA~~g 159 (301)
T 1ega_A 155 SAETG 159 (301)
T ss_dssp CTTTT
T ss_pred ECCCC
Confidence 99875
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.79 E-value=1.3e-18 Score=132.18 Aligned_cols=145 Identities=20% Similarity=0.261 Sum_probs=89.4
Q ss_pred eeE-EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc---------chhhHH
Q 030848 17 EFH-VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWE 86 (170)
Q Consensus 17 ~~~-i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~ 86 (170)
.++ |+++|++|+|||||+|++.+..... ......|.+.....+.+.+..+.+|||+|... +...+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~----~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl- 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKV----DTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL- 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccc----cCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-
Confidence 455 9999999999999999998732211 12223444445556777788899999999521 22222
Q ss_pred HHhhccCEEEEEEeCCCcc--cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHh----Ccccccccee
Q 030848 87 KYYEEAHAVVFVIDAACPS--RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL----DLKKLDERVC 160 (170)
Q Consensus 87 ~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~ 160 (170)
..+..+|.+++|+|++++. ..+....+ ..++......+.|+++|+||+|+.+.. ..+..+.+ .. .....+
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~--l~~~~~ 328 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE--LYSPIF 328 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH--HCSCEE
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH--hcCCCC
Confidence 3468899999999998876 33333333 233333333578999999999997643 22211111 10 002245
Q ss_pred EEEeeeccCC
Q 030848 161 MFEAVSGYDG 170 (170)
Q Consensus 161 ~~~~~Sa~~g 170 (170)
+++++||++|
T Consensus 329 ~~~~~SA~~g 338 (364)
T 2qtf_A 329 DVIPISALKR 338 (364)
T ss_dssp EEEECBTTTT
T ss_pred cEEEEECCCC
Confidence 7899999986
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=6.3e-19 Score=148.03 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=101.6
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCC-C-------CC--C--CcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-G-------LP--P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-~-------~~--~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
..++.++|+++|++++|||||++++.+...... . .. . .....|+......++..+..+.+|||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 356789999999999999999999976321110 0 00 0 0111233333334556678999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-----HHHHHhHhCccc
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-----ADELARYLDLKK 154 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-----~~~~~~~~~~~~ 154 (170)
+......+++.+|++|+|+|+++....+ ..+++..+.. .+.| +++++||+|+.+... .+++.+.+...+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 9888888899999999999999864433 3334433322 2566 899999999975211 123444444344
Q ss_pred cccceeEEEeeeccCC
Q 030848 155 LDERVCMFEAVSGYDG 170 (170)
Q Consensus 155 ~~~~~~~~~~~Sa~~g 170 (170)
+....++++++||++|
T Consensus 447 ~~~~~vp~IpvSAktG 462 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKA 462 (1289)
T ss_dssp SCTTTCCEEECCSTTT
T ss_pred ccccceeEEEEEeccC
Confidence 4345679999999986
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.79 E-value=3.9e-18 Score=126.18 Aligned_cols=98 Identities=21% Similarity=0.159 Sum_probs=62.8
Q ss_pred CeEEEEEEcCCCC-------------cchhhHHHHhhccCEEE-EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848 67 NSKLVFWDLGGQP-------------GLRSIWEKYYEEAHAVV-FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132 (170)
Q Consensus 67 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~ 132 (170)
...+.+|||||.. .+......+++.++.++ +|+|+++..+......+...+ . ..+.|+++|+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~ 199 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVI 199 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEE
Confidence 3689999999942 23456677888888776 699998765444433333333 2 2468999999
Q ss_pred eCCCccccCC--HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 133 NKQDLPDAVS--ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 133 nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
||+|+.+... .+.+...+. .......+++++||++|
T Consensus 200 NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~v~~~SA~~~ 237 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENKLL--PLRRGYIGVVNRSQKDI 237 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTCSS--CCTTCEEECCCCCCBCT
T ss_pred EccccCCCCchHHHHHhCCcC--cCCCCcEEEECCChhhc
Confidence 9999976433 222222111 11112468999999986
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.78 E-value=7.5e-20 Score=143.59 Aligned_cols=145 Identities=23% Similarity=0.250 Sum_probs=93.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 95 (170)
+..+|+++|++++|||||++++..... ..... ...|.......+...+..+.+|||||++.+...+...++.+|++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v--~~~e~--~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~a 78 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV--ASGEA--GGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIV 78 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH--SBTTB--CCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC--ccccC--CCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEE
Confidence 457899999999999999999976211 11110 11122222223445567899999999999988888888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc--c--cceeEEEeeeccCC
Q 030848 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL--D--ERVCMFEAVSGYDG 170 (170)
Q Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~g 170 (170)
|+|+|+++....+. .+.+..... .+.|+++++||+|+++... ++..+.+..... . ...++++++||++|
T Consensus 79 ILVVda~~g~~~qT-~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG 151 (501)
T 1zo1_I 79 VLVVAADDGVMPQT-IEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAG 151 (501)
T ss_dssp EEEEETTTBSCTTT-HHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred EEEeecccCccHHH-HHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence 99999987432221 122222222 4678999999999975321 112112211111 1 12479999999987
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=2.6e-19 Score=139.91 Aligned_cols=142 Identities=19% Similarity=0.232 Sum_probs=85.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC--------CCcchhhH
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--------QPGLRSIW 85 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~ 85 (170)
.+...+|+++|.+|+|||||+|++.+...... .+....|...........+..+.+||||| ++.+....
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v---~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIV---EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCccc---CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 34567999999999999999999976221111 11111222333334555678899999999 56667777
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
..+++.+|++|+|+|..+..+. ...++..++.. .+.|+++++||+|+.+.. .+..+.+. .+. ...+++
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~-lg~----~~~~~i 164 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS-LGF----GEPYPI 164 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG-GSS----SSEEEC
T ss_pred HhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH-cCC----CceEEe
Confidence 8889999999999998765433 33444455443 578999999999986431 12222222 111 134689
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 165 SA~~g 169 (456)
T 4dcu_A 165 SGTHG 169 (456)
T ss_dssp CTTTC
T ss_pred ecccc
Confidence 99876
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=2.4e-18 Score=136.38 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=89.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCC------C-----C-CCC------cccCCcceeEEEEEecCeEEEEEEcC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE------G-----L-PPD------RIVPTVGLNIGRIEVSNSKLVFWDLG 76 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~-----~-~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~ 76 (170)
.+..+|+++|++|+|||||++++........ . . ... ....++......+...+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4568999999999999999999975211110 0 0 000 11123333344577788999999999
Q ss_pred CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhC
Q 030848 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD 151 (170)
Q Consensus 77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~ 151 (170)
|++.+......+++.+|++|+|+|+++....+ ....+.... ..+.|+++++||+|+..... .+++.+.+.
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~----~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~ 163 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR----LRDTPILTFMNKLDRDIRDPMELLDEVENELK 163 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT----TTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH----HcCCCEEEEEcCcCCccccHHHHHHHHHHHhC
Confidence 99999888888999999999999998764322 233333322 24789999999999987544 344444444
No 176
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=2.6e-17 Score=120.48 Aligned_cols=123 Identities=8% Similarity=-0.008 Sum_probs=78.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh-------hHHH
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS-------IWEK 87 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~ 87 (170)
...++|+++|.+|+|||||+|++.+....... .....+.......+...+..+.+|||||..++.. .+..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~ 113 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS---PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKS 113 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC---SSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc---CCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHH
Confidence 46799999999999999999999862211111 1111222333345667788999999999765431 1122
Q ss_pred H--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccc
Q 030848 88 Y--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPDA 140 (170)
Q Consensus 88 ~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~~ 140 (170)
+ .+.+|++|+|+|++..........++..+...... ...|+++|+||+|+.++
T Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred HhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2 24799999999987643222334555555433221 12699999999999653
No 177
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=6.2e-19 Score=133.97 Aligned_cols=146 Identities=16% Similarity=0.250 Sum_probs=74.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC---CCcccCCcceeEEEEEe--c--CeEEEEEEcCCC-------Cc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---PDRIVPTVGLNIGRIEV--S--NSKLVFWDLGGQ-------PG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~--~~~~~i~D~~G~-------~~ 80 (170)
...++|+++|++|+|||||++++.+......+.. .....++++........ . ...+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999865211111000 00112344444333222 2 247999999997 55
Q ss_pred chhhHH-------HHhhccC-------------EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 81 LRSIWE-------KYYEEAH-------------AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 81 ~~~~~~-------~~~~~~~-------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
+...+. .+++.++ +++|+++.. ..++......+...+. .+.|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 555444 5665543 455555432 3445444432222222 57899999999999763
Q ss_pred CCH----HHHHhHhCccccccceeEEEeeeccCC
Q 030848 141 VSA----DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 141 ~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
... +++.+.++ ...++++++||++|
T Consensus 190 ~ev~~~k~~i~~~~~-----~~~i~~~~~Sa~~~ 218 (361)
T 2qag_A 190 KERERLKKRILDEIE-----EHNIKIYHLPDAES 218 (361)
T ss_dssp HHHHHHHHHHHHHTT-----CC-CCSCCCC----
T ss_pred HHHHHHHHHHHHHHH-----HCCCCEEeCCCcCC
Confidence 322 23444444 45678999999875
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.74 E-value=7.9e-17 Score=131.37 Aligned_cols=122 Identities=17% Similarity=0.110 Sum_probs=87.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCC------C--CCCC------cccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE------G--LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~--~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
....+|+++|++|+|||||++++........ . ...+ ....|+......+...+..+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 4568999999999999999999974221110 0 0000 223455555566777889999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
+...+..+++.+|++|+|+|+++..+.+....| ..+.. .+.|+++++||+|+....
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTCC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccCC
Confidence 999999999999999999999988776654443 33333 378999999999998644
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=2.4e-17 Score=122.91 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=48.2
Q ss_pred cCeEEEEEEcCCCCc-------------chhhHHHHhhccCEEEEEEeCCCcccH-HHHHHHHHHHHcCCCCCCCcEEEE
Q 030848 66 SNSKLVFWDLGGQPG-------------LRSIWEKYYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLIL 131 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v 131 (170)
....+.+|||||... +......+++.+|++++|+|+.+.... .........+ . ..+.|+++|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~---~~~~~~i~v 204 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D---PEGKRTIGV 204 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C---SSCSSEEEE
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-C---CCCCcEEEE
Confidence 346799999999643 445667788999999999997433211 1111222222 2 247899999
Q ss_pred eeCCCccccC
Q 030848 132 ANKQDLPDAV 141 (170)
Q Consensus 132 ~nK~D~~~~~ 141 (170)
+||+|+.+..
T Consensus 205 ~NK~Dl~~~~ 214 (315)
T 1jwy_B 205 ITKLDLMDKG 214 (315)
T ss_dssp EECTTSSCSS
T ss_pred EcCcccCCcc
Confidence 9999997644
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=1.2e-16 Score=130.35 Aligned_cols=122 Identities=19% Similarity=0.162 Sum_probs=87.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCC-------C-CCCC------cccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------G-LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-------~-~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
....+|+++|++|+|||||++++........ + ...+ ....|+......+.+.+..+.+|||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4568999999999999999999974221110 0 0000 122344444556777889999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
+...+..+++.+|++|+|+|+++..+.+.... +..+.. .+.|+++++||+|+....
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTCC
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCccccc
Confidence 98888899999999999999998777655433 333433 378999999999998743
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.72 E-value=9.1e-17 Score=122.06 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=61.2
Q ss_pred CeEEEEEEcCCCCcc-------------hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848 67 NSKLVFWDLGGQPGL-------------RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n 133 (170)
...+.+|||||.... ......+++++|++|+|+|..+...... .+ ..+.......+.|+++|+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~~-~~l~~~~~~~~~~~i~V~n 211 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--DA-IKISREVDPSGDRTFGVLT 211 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--HH-HHHHHHSCTTCTTEEEEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--HH-HHHHHHhcccCCCEEEEEe
Confidence 457999999996554 5567788899999999998765443321 11 1222223335679999999
Q ss_pred CCCccccC--CHHHHHhHhCccccccceeEEEeeeccC
Q 030848 134 KQDLPDAV--SADELARYLDLKKLDERVCMFEAVSGYD 169 (170)
Q Consensus 134 K~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (170)
|+|+.++. ..+...... .....+|+++|+++
T Consensus 212 K~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~s 244 (360)
T 3t34_A 212 KIDLMDKGTDAVEILEGRS-----FKLKYPWVGVVNRS 244 (360)
T ss_dssp CGGGCCTTCCSHHHHTTSS-----SCCSSCCEEECCCC
T ss_pred CCccCCCcccHHHHHcCcc-----ccccCCeEEEEECC
Confidence 99997632 222222222 23446788888765
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=6.3e-18 Score=129.77 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE-----------------Eec---CeEEEEEEcCC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-----------------EVS---NSKLVFWDLGG 77 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~---~~~~~i~D~~G 77 (170)
++|+++|.+|+|||||+|++.+..............++.+...... .+. ..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999987432111222222233333321110 011 35799999999
Q ss_pred CCcc----hhhHH---HHhhccCEEEEEEeCCCc
Q 030848 78 QPGL----RSIWE---KYYEEAHAVVFVIDAACP 104 (170)
Q Consensus 78 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 104 (170)
.... ..... .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 6431 22222 346899999999999875
No 183
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.71 E-value=5.5e-17 Score=134.77 Aligned_cols=121 Identities=13% Similarity=0.054 Sum_probs=85.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC------CC----CC--cccCCcceeEEEEEec---------------
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LP----PD--RIVPTVGLNIGRIEVS--------------- 66 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~------~~----~~--~~~~~~~~~~~~~~~~--------------- 66 (170)
.....+|+++|+.++|||||++++......... .. .. ....|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 345679999999999999999999763221111 00 00 1112333333333332
Q ss_pred -CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 67 -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 67 -~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+..+.+|||||+.++...+..+++.+|++|+|+|+++..+++....|. .... .+.|+++++||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcch
Confidence 678999999999999999999999999999999999988877654443 3322 4789999999999974
No 184
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.70 E-value=1.1e-15 Score=124.27 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=86.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCC-------CCCCCc-------ccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------GLPPDR-------IVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 80 (170)
....+|+++|+.|+|||||++++........ +..... ...++......+......+.+|||||++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 4567899999999999999999975332211 000111 11233344445666788999999999999
Q ss_pred chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
+...+..+++.+|++++|+|+++.-..+ ...++..... .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 9988899999999999999988764433 3344444433 368999999999997
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.69 E-value=7.4e-17 Score=124.26 Aligned_cols=143 Identities=25% Similarity=0.344 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCc-------chhhHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY 89 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~ 89 (170)
..++++|++|+|||||++++.+..+...+.......+ ....+...+ ..+.+||+||..+ +...+....
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p----~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP----NLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCC----EEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecc----eeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 3588999999999999999987543333333322222 333455554 7899999999643 112223334
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 168 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (170)
.+++.+++++|++ ...+..+..+..++.... .....|.++++||+|+......+++.+.++ ...++++++||+
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~ 307 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSAL 307 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTT
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECC
Confidence 6799999999998 566676666666665432 123578899999999976522333434433 334679999998
Q ss_pred CC
Q 030848 169 DG 170 (170)
Q Consensus 169 ~g 170 (170)
+|
T Consensus 308 ~g 309 (416)
T 1udx_A 308 TG 309 (416)
T ss_dssp TC
T ss_pred Cc
Confidence 75
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=112.50 Aligned_cols=143 Identities=20% Similarity=0.182 Sum_probs=83.4
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecCeEEEEEEcCCCCc----------
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQPG---------- 80 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~---------- 80 (170)
.-....+++++|++|+|||||+|++.+... .....++.+.. ...+...+ .+.+|||||...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~------~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~ 94 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKS------LARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRK 94 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------------CCEEEEEEET-TEEEEECCCCC------CCHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCc------cccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHH
Confidence 345667999999999999999999976220 01111111111 11233333 688999999642
Q ss_pred chhhHHHHh---hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhCcc
Q 030848 81 LRSIWEKYY---EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLK 153 (170)
Q Consensus 81 ~~~~~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~~~ 153 (170)
+......++ +.++++++++|++++.+.... . ...... ..+.|++++.||+|+.+.... ..+...+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~-~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~-- 167 (210)
T 1pui_A 95 WQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-Q-MIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVL-- 167 (210)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG--
T ss_pred HHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-H-HHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHH--
Confidence 222233344 468899999999887665321 1 111111 146789999999998763322 23333332
Q ss_pred ccccceeEEEeeeccCC
Q 030848 154 KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 154 ~~~~~~~~~~~~Sa~~g 170 (170)
.....+.++++||++|
T Consensus 168 -~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 168 -AFNGDVQVETFSSLKK 183 (210)
T ss_dssp -GGCSCEEEEECBTTTT
T ss_pred -hcCCCCceEEEeecCC
Confidence 1123578999999875
No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.68 E-value=2e-16 Score=126.02 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=80.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----------------------------------
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---------------------------------- 61 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 61 (170)
...+|+|+|.+|+|||||+|++.+.... .. .....+++.....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~--~~-~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVP--GS-RVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCS--SC-CCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccc--cC-ccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 4579999999999999999999873211 00 0011111110000
Q ss_pred ----EEEecC---eEEEEEEcCCCCc-----------chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC
Q 030848 62 ----RIEVSN---SKLVFWDLGGQPG-----------LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123 (170)
Q Consensus 62 ----~~~~~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 123 (170)
.+.... ..+.+|||||... +......+++.+|++|+|+|+++....+....++..+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence 000110 3689999999654 445667788999999999999876555555555544422
Q ss_pred CCCcEEEEeeCCCccccCCHHHHHh
Q 030848 124 QGAPLLILANKQDLPDAVSADELAR 148 (170)
Q Consensus 124 ~~~~ii~v~nK~D~~~~~~~~~~~~ 148 (170)
.+.|+++|+||+|+.+.....+..+
T Consensus 217 ~~~pvilVlNK~Dl~~~~el~~~~~ 241 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVETQQLMRVYG 241 (550)
T ss_dssp CGGGEEEEEECGGGSCHHHHHHHHH
T ss_pred cCCCEEEEEECCCccCHHHHHHHHH
Confidence 3578999999999976444444433
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.68 E-value=2.6e-16 Score=128.43 Aligned_cols=69 Identities=19% Similarity=0.311 Sum_probs=50.7
Q ss_pred eEEEEEEcCCCCc---chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 68 SKLVFWDLGGQPG---LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 68 ~~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
..+.+|||||... .......+++.+|++|+|+|++++.+..+...+...+ .. .+.|+++|+||+|+.+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l-~~---~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI-KG---RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-TT---SCCCEEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-Hh---hCCCEEEEEECcccccc
Confidence 4699999999433 3455567889999999999999887776654443232 21 35689999999999753
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=4.5e-16 Score=117.99 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=56.1
Q ss_pred CeEEEEEEcCCCC-------------cchhhHHHHhhccCE-EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848 67 NSKLVFWDLGGQP-------------GLRSIWEKYYEEAHA-VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132 (170)
Q Consensus 67 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~ 132 (170)
...+.+|||||.. .+..+...+++..+. +++|+|++....-.....++..+ ...+.|+++|+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~ 204 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVI 204 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEe
Confidence 4679999999942 234466667766664 45566665432222222233332 22578999999
Q ss_pred eCCCccccCC-HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 133 NKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 133 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
||+|+.++.. ..+..+. +.........+++++||++|
T Consensus 205 NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp ECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHH
T ss_pred ccccccCcchhHHHHHhC-CcccccCCceEEEeCCcccc
Confidence 9999976433 2222221 11111122457889999864
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.66 E-value=2.6e-15 Score=122.70 Aligned_cols=121 Identities=18% Similarity=0.055 Sum_probs=85.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCC-------CC-CC------cccCCcceeEEEEEecC-------eEEEEE
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------LP-PD------RIVPTVGLNIGRIEVSN-------SKLVFW 73 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------~~-~~------~~~~~~~~~~~~~~~~~-------~~~~i~ 73 (170)
....+|+++|+.|+|||||++++......... .. .+ ....|+......+.+.+ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45679999999999999999999652111110 00 00 11223433334455555 889999
Q ss_pred EcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 74 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
||||+..+...+..+++.+|++|+|+|+++....+.. ..+..... .+.|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 9999999988889999999999999999987654433 33333322 47899999999999764
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=7.9e-15 Score=110.91 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-----------------eEEEEEEcCCCCc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQPG 80 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~D~~G~~~ 80 (170)
++|+++|.+|+|||||+|++.+..............++.+ .+.+.+ ..+.+|||||...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g----~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG----VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS----EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE----EEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 6899999999999999999987332222222223333333 233332 5799999999765
Q ss_pred ch-------hhHHHHhhccCEEEEEEeCCC
Q 030848 81 LR-------SIWEKYYEEAHAVVFVIDAAC 103 (170)
Q Consensus 81 ~~-------~~~~~~~~~~~~~i~v~d~~~ 103 (170)
.. ..+..+++++|++++|+|+++
T Consensus 79 ~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 79 GASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp THHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 42 234456799999999999986
No 192
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=2e-14 Score=109.18 Aligned_cols=84 Identities=24% Similarity=0.301 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-------------------ecCeEEEEEEcCCC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-------------------VSNSKLVFWDLGGQ 78 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~i~D~~G~ 78 (170)
++|+++|.+|+|||||+|++.+...........+..++.+.. .+. ..+..+.+|||||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 579999999999999999998753322323233344444432 111 12457999999996
Q ss_pred Ccc-------hhhHHHHhhccCEEEEEEeCCC
Q 030848 79 PGL-------RSIWEKYYEEAHAVVFVIDAAC 103 (170)
Q Consensus 79 ~~~-------~~~~~~~~~~~~~~i~v~d~~~ 103 (170)
... ...+...++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 542 3344556799999999999975
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.58 E-value=2e-15 Score=114.45 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=58.4
Q ss_pred cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHH
Q 030848 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 145 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~ 145 (170)
.+..+.+|||||-.. .....++.+|++|+|+|+......+.+. . ...+.|+++|+||+|+.+......
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEEEECCCCcChhHHHH
Confidence 467899999999433 2233458999999999987654432211 1 112458899999999976433333
Q ss_pred HHhHhCc----ccc--ccceeEEEeeeccCC
Q 030848 146 LARYLDL----KKL--DERVCMFEAVSGYDG 170 (170)
Q Consensus 146 ~~~~~~~----~~~--~~~~~~~~~~Sa~~g 170 (170)
..+.+.. ... ....++++++||++|
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g 268 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEG 268 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGT
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCC
Confidence 2222221 110 122468999999986
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.57 E-value=4.2e-14 Score=112.61 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=92.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccC----------------CCCC--CCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV----------------EGLP--PDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 77 (170)
+.-+|+|+|+.++|||||..+|+.....+ .+.. .....-|+......+.+++..++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 34689999999999999999995321110 0000 11122355555667889999999999999
Q ss_pred CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhC
Q 030848 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD 151 (170)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~ 151 (170)
+.+|.......++-+|++|+|+|+...-.-+. ...|..... .+.|.++++||+|.+.... .+++.+.+.
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence 99999999999999999999999987655443 344444444 4889999999999987443 344444444
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.3e-14 Score=110.26 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=80.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------cchhhHHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEKY 88 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~ 88 (170)
...+|+++|.|++|||||+|++.+....+.+.. ..|.......+.+.+.+++++||||-. .....+...
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~p----ftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYE----FTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTC----SSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCC----CceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 346899999999999999999987544333332 234445555688899999999999922 223344556
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcc
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRN-EDLQGAPLLILANKQDLP 138 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~ii~v~nK~D~~ 138 (170)
++.+|++++|+|+++|.. .......++... ....+.|.++++||.|..
T Consensus 147 i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 789999999999998632 222222222211 122456788999999974
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.56 E-value=3.3e-15 Score=110.88 Aligned_cols=145 Identities=15% Similarity=0.241 Sum_probs=70.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhh-cccCCCCCC--CcccCCcceeEEEEE----ecCeEEEEEEcCCC-------Cc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSV-YSNVEGLPP--DRIVPTVGLNIGRIE----VSNSKLVFWDLGGQ-------PG 80 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~-~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~-------~~ 80 (170)
.-.++|+++|++|+|||||++++.+. .....+... ....++.......+. .....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35689999999999999999998652 111111000 000112221111111 22457999999997 44
Q ss_pred chhhHH-------HHhhcc-------------CEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 81 LRSIWE-------KYYEEA-------------HAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 81 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+..... .+++.. ++++|+.+++. .+++... ..+..+ . .+.++++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l----~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI----H-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH----T-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH----H-hcCCEEEEEEeCCCCC
Confidence 444433 444432 33555555432 1233222 222222 1 4678999999999975
Q ss_pred cCC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848 140 AVS----ADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 140 ~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
... .+++.+.++ ...++++++||++|
T Consensus 170 ~~e~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 170 LKERERLKKRILDEIE-----EHNIKIYHLPDAES 199 (301)
T ss_dssp HHHHHHHHHHHHHHHH-----HTTCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHH-----HcCCeEEecCCccc
Confidence 322 234444444 44578999999875
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=9.6e-15 Score=112.57 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=71.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC--CCcccCCcceeEEEEE----ecCeEEEEEEcCCCCcch------
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLR------ 82 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~------ 82 (170)
.-.++|+++|++|+|||||++++.+......+.. .....++.......+. .....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 3457899999999999999999987432111110 0011223322211111 122468999999965421
Q ss_pred -hh-------HHHH-----------hhccCEEEEEEeCCCc-ccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 83 -SI-------WEKY-----------YEEAHAVVFVIDAACP-SRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 83 -~~-------~~~~-----------~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
.. ...+ ++++++.+++|+.... .++.... .++..+. .+.|+|+|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHH
Confidence 11 1112 2344443444443332 2343333 4444442 368999999999986532
Q ss_pred CH----HHHHhHhCccccccceeEEEeeeccCC
Q 030848 142 SA----DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 142 ~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
.. .++.+.+. ..+++++++||+++
T Consensus 184 ev~~~k~~i~~~~~-----~~~i~~~~~sa~~~ 211 (418)
T 2qag_C 184 ECQQFKKQIMKEIQ-----EHKIKIYEFPETDD 211 (418)
T ss_dssp HHHHHHHHHHHHHH-----HHTCCCCCCC----
T ss_pred HHHHHHHHHHHHHH-----HcCCeEEeCCCCCC
Confidence 22 23333333 34566778887653
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=109.54 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=51.3
Q ss_pred cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH--
Q 030848 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-- 143 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~-- 143 (170)
.+..+.++||||-... .......+|++++|+|++.+...+.... .+ .+.|.++++||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 4678999999994322 2334578999999999886533221111 11 23477999999999753221
Q ss_pred --HHHHhHhCcccc--ccceeEEEeeeccCC
Q 030848 144 --DELARYLDLKKL--DERVCMFEAVSGYDG 170 (170)
Q Consensus 144 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~g 170 (170)
.+....++.... .....+++++||++|
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g 263 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSG 263 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTC
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCC
Confidence 122222221110 112467899999986
No 199
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.51 E-value=1.6e-14 Score=107.24 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=81.0
Q ss_pred CcccCCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCc
Q 030848 50 DRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAP 127 (170)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 127 (170)
..+.||++..+. ... .+..+.+||+ ++++..++..+++++|++|+|+|++++. ++..+..|+..+.. .+.|
T Consensus 45 ~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~p 117 (301)
T 1u0l_A 45 QNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELE 117 (301)
T ss_dssp TTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCE
T ss_pred cCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCC
Confidence 456678886544 322 2347999999 8888888889999999999999999987 67877788776644 4789
Q ss_pred EEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 128 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 128 ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+++|+||+|+.+....++..+.++... .. +++++|||++|
T Consensus 118 iilv~NK~DL~~~~~v~~~~~~~~~~~--~~-~~~~~~SAktg 157 (301)
T 1u0l_A 118 TVMVINKMDLYDEDDLRKVRELEEIYS--GL-YPIVKTSAKTG 157 (301)
T ss_dssp EEEEECCGGGCCHHHHHHHHHHHHHHT--TT-SCEEECCTTTC
T ss_pred EEEEEeHHHcCCchhHHHHHHHHHHHh--hh-CcEEEEECCCC
Confidence 999999999975322223333333111 12 68999999986
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.50 E-value=4.8e-13 Score=109.39 Aligned_cols=98 Identities=20% Similarity=0.144 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCCc-------------chhhHHHHh-hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848 68 SKLVFWDLGGQPG-------------LRSIWEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133 (170)
Q Consensus 68 ~~~~i~D~~G~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n 133 (170)
.++.++||||--. .......++ ..+|++++|+|++.+...++.......+. ..+.|+++|+|
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlN 225 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVIT 225 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEE
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEe
Confidence 4689999999322 223444444 47899999999987644333323333332 24689999999
Q ss_pred CCCccccCCH-HHHHhHhCccccccceeEEEeeeccCC
Q 030848 134 KQDLPDAVSA-DELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 134 K~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
|+|+.++... ..+.+ -+.........+++++||++|
T Consensus 226 KiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 226 KLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDI 262 (772)
T ss_dssp CTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEES
T ss_pred CcccCCcchhhHHHHH-HHhhhhhccCCceEEeccccc
Confidence 9999864332 22222 111112234567899999876
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.49 E-value=4.5e-14 Score=99.96 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=82.9
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHHhhcccCC-----CCCCCccc-----CCcceeEEEE------------------
Q 030848 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-----GLPPDRIV-----PTVGLNIGRI------------------ 63 (170)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-----~~~~~~~~-----~~~~~~~~~~------------------ 63 (170)
.......+++++|.+|+|||||++++........ ...+.... ...+.....+
T Consensus 25 ~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 25 LRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp HHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred hcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH
Confidence 3344667999999999999999999976421110 00110000 0001111111
Q ss_pred EecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--C
Q 030848 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--V 141 (170)
Q Consensus 64 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~ 141 (170)
...+..+.+|||+|+...... +....+.+++|+|+.+..... .. +... .+.|+++++||+|+.+. .
T Consensus 105 ~~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~--~~-~~~~------~~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 105 KFSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV--EK-HPEI------FRVADLIVINKVALAEAVGA 172 (221)
T ss_dssp GGTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH--HH-CHHH------HHTCSEEEEECGGGHHHHTC
T ss_pred hcCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh--hh-hhhh------hhcCCEEEEecccCCcchhh
Confidence 123467899999995111111 112467899999987653211 11 1111 14678999999999753 4
Q ss_pred CHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 142 SADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
..++..+.++.. ...++++++||++|
T Consensus 173 ~~~~~~~~~~~~---~~~~~i~~~Sa~~g 198 (221)
T 2wsm_A 173 DVEKMKADAKLI---NPRAKIIEMDLKTG 198 (221)
T ss_dssp CHHHHHHHHHHH---CTTSEEEECBTTTT
T ss_pred HHHHHHHHHHHh---CCCCeEEEeecCCC
Confidence 666666666522 12468999999986
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.46 E-value=1.4e-13 Score=111.47 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCC-------C-CCCc------ccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG-------L-PPDR------IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------~-~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 83 (170)
.||+++|+.++|||||..+++.....+.. . ..+. ..-|+......+.+++..++++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 47899999999999999999543222111 0 0000 11244444445777889999999999999999
Q ss_pred hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (170)
Q Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~ 142 (170)
.....++-+|++|+|+|+...-.-+ +...|..... .+.|.++++||+|.+....
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~----~~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRK----MGIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHH----HTCSCEECCEECCSSSCCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEeccccccCCH
Confidence 9999999999999999998664433 3344444433 3678899999999887543
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.45 E-value=1.3e-13 Score=100.03 Aligned_cols=73 Identities=21% Similarity=0.058 Sum_probs=43.5
Q ss_pred eEEEEEEcCCCCcchhhH------HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848 68 SKLVFWDLGGQPGLRSIW------EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~ 141 (170)
..+.+|||||..+..... ...+.+ +++++++|+.......................+.|+++++||+|+.+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 479999999987653321 124456 8889999876543333322221111111111367899999999997643
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.44 E-value=1e-13 Score=104.52 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=53.7
Q ss_pred cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH-
Q 030848 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD- 144 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~- 144 (170)
.+..+.+|||||....... ..+.+|++++|+|++.....+.... .. .+.|.++++||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 3678999999996554332 4589999999999875432111100 00 135789999999997642222
Q ss_pred ---HHHhHhCcccc--ccceeEEEeeeccCC
Q 030848 145 ---ELARYLDLKKL--DERVCMFEAVSGYDG 170 (170)
Q Consensus 145 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~g 170 (170)
++.+.+..... ..+..+++++||++|
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g 245 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEK 245 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGT
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCC
Confidence 22222211111 112468999999986
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.44 E-value=2.7e-12 Score=105.18 Aligned_cols=130 Identities=19% Similarity=0.134 Sum_probs=85.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcc------cCCC-C-CCC------cccCCcceeEEEEEec-------CeEEEEEEc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYS------NVEG-L-PPD------RIVPTVGLNIGRIEVS-------NSKLVFWDL 75 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~------~~~~-~-~~~------~~~~~~~~~~~~~~~~-------~~~~~i~D~ 75 (170)
.-+|+|+|+.++|||||..+|+.... .... . ..+ ...-|+......+.++ +..++++||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 35799999999999999999953211 1111 0 000 1112333333334443 578999999
Q ss_pred CCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC---CHHHHHhHhC
Q 030848 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLD 151 (170)
Q Consensus 76 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~---~~~~~~~~~~ 151 (170)
||+.+|.......++-+|++|+|+|+...-..+ +...|.+... .+.|.++++||+|.+... ..+++.+.+.
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~----~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANK----YGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----HTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 999999999999999999999999998765433 3344444444 478999999999987643 3445555444
No 206
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=91.31 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=69.6
Q ss_pred CCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHH---HHHHcCCC-CCCCcEEEEeeCC-CccccCCHHHHHhHh
Q 030848 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL---EKVLRNED-LQGAPLLILANKQ-DLPDAVSADELARYL 150 (170)
Q Consensus 76 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~ii~v~nK~-D~~~~~~~~~~~~~~ 150 (170)
+||+.++.+|..|++++|++|||+|.+|.+.++ .+.-+ ..++.... ..+.|++|+.||. |++++.+..++.+.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 378899999999999999999999999886654 33333 33333322 3678999999995 899999999999999
Q ss_pred CccccccceeEEEeeeccCC
Q 030848 151 DLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 151 ~~~~~~~~~~~~~~~Sa~~g 170 (170)
..... .+.+.+.+|||++|
T Consensus 189 ~L~~l-~R~W~Iq~csA~TG 207 (227)
T 3l82_B 189 HLNLL-NHPWLVQDTEAETL 207 (227)
T ss_dssp TGGGG-CSCEEEEEEETTTC
T ss_pred CCcCC-CCCEEEEEeECCCC
Confidence 97766 48999999999987
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.27 E-value=6.8e-12 Score=95.83 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=50.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-----------------CeEEEEEEcCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDLGG 77 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~D~~G 77 (170)
...++++++|.+|+|||||+|++.+.......... .|...+...+.+. +..+.+|||||
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~----tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPF----CTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCc----cccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 45689999999999999999999873221111111 1222222233332 23599999999
Q ss_pred CCcch-------hhHHHHhhccCEEEEEEeCCCcc
Q 030848 78 QPGLR-------SIWEKYYEEAHAVVFVIDAACPS 105 (170)
Q Consensus 78 ~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~ 105 (170)
..... ..+..+++++|++++|+|+++..
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 65533 25667789999999999997543
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.26 E-value=1.9e-11 Score=92.02 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=75.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC------CCCc----------------ccCCcceeEE-----------
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDR----------------IVPTVGLNIG----------- 61 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------~~~~----------------~~~~~~~~~~----------- 61 (170)
.+...++++|++|+|||||++++.+......+. .... ..........
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 455789999999999999999997532211110 0000 0000001000
Q ss_pred ---------EEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848 62 ---------RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132 (170)
Q Consensus 62 ---------~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~ 132 (170)
.+...+..+.++||||-..... .....+|.+++++|+......+...... .+.+.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEE
Confidence 0122467899999999543322 2347899999999986442211111100 123457778
Q ss_pred eCCCcccc-CC----HHHHHhHhCcccc--ccceeEEEeeeccCC
Q 030848 133 NKQDLPDA-VS----ADELARYLDLKKL--DERVCMFEAVSGYDG 170 (170)
Q Consensus 133 nK~D~~~~-~~----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g 170 (170)
||+|+... .. ..++...+..... .....+++.+||++|
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g 245 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG 245 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCC
Confidence 99997431 11 1222222211110 012357888999876
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=89.52 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=73.3
Q ss_pred cCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHH---HHHcCCC-CCCCcEEEEeeC-CCccccCCHHHHHhH
Q 030848 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALE---KVLRNED-LQGAPLLILANK-QDLPDAVSADELARY 149 (170)
Q Consensus 75 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~ii~v~nK-~D~~~~~~~~~~~~~ 149 (170)
.+||+.++..|..|+.++|++|||+|.+|.+.++ .+.-+. .++.... ..+.|++|+.|| .|++++.+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578999999999999999999999999987654 322222 3332211 257899999996 699999999999999
Q ss_pred hCccccccceeEEEeeeccCC
Q 030848 150 LDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 150 ~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+...... +.+.+.+|||++|
T Consensus 273 L~L~~l~-r~W~Iq~csA~tG 292 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETL 292 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTC
T ss_pred cCCccCC-CcEEEEecccCCC
Confidence 9977664 7999999999997
No 210
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.18 E-value=1.1e-12 Score=92.99 Aligned_cols=43 Identities=21% Similarity=0.075 Sum_probs=30.5
Q ss_pred CCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848 125 GAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 125 ~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 170 (170)
+.|.++++||+|+.+. ...++..+.++.. ...++++++||++|
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g 208 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRI---NPDAEVVLLSLKTM 208 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECCTTTC
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHh---CCCCeEEEEEecCC
Confidence 3567999999999763 4566666655421 12468999999986
No 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.16 E-value=7.8e-12 Score=95.19 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=73.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-------h-hhHHHH
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------R-SIWEKY 88 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~-~~~~~~ 88 (170)
..+++++|.+|+|||||+|++.+..............+.+......+... ..+.++||||-... . .....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 35899999999999999999987421111111111122222222233332 34899999993211 1 122223
Q ss_pred h--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 89 Y--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 89 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
+ +..+.+++++++.+.-.+..+.. +......+.|+++++||.|.......+...+.++
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~ 300 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYA 300 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHH
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHHH
Confidence 2 67899999998754322221111 2223335689999999999876544444444433
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=2.1e-10 Score=88.40 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=68.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC----eEEEEEEcCCCCcc-----------
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN----SKLVFWDLGGQPGL----------- 81 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~G~~~~----------- 81 (170)
.++++++|++|+|||||+|.|.+.. ..+.......+........+..+. ..+.++|++|-...
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~--l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTK--FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSC--C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcc--ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 3569999999999999999998742 111111111111111111111121 26899999983211
Q ss_pred ---hhhHHHHhh-------------c--cCEEE-EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848 82 ---RSIWEKYYE-------------E--AHAVV-FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (170)
Q Consensus 82 ---~~~~~~~~~-------------~--~~~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~ 142 (170)
...+..++. + +|+++ ++.|...+-+..+ ..++.... .+.|+|+++||+|...+..
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLD-SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTC-SCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHh-hCCCEEEEEcchhccchHH
Confidence 112222211 1 23444 4555543322222 13333222 5789999999999876444
Q ss_pred HHHHHhHhCccccccceeEEEeee
Q 030848 143 ADELARYLDLKKLDERVCMFEAVS 166 (170)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~S 166 (170)
.....+.+.. .+...+++++.+|
T Consensus 194 ~~~l~~~I~~-~L~~~gi~I~~is 216 (427)
T 2qag_B 194 LTKFKIKITS-ELVSNGVQIYQFP 216 (427)
T ss_dssp HHHHHHHHHH-HHBTTBCCCCCCC
T ss_pred HHHHHHHHHH-HHHHcCCcEEecC
Confidence 4444333331 1223444555444
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.09 E-value=4.4e-11 Score=91.02 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=72.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccC-CCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-------h-hhHHH
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------R-SIWEK 87 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~-~~~~~ 87 (170)
..+++++|.+|+|||||+|++.+..... .........+.+......+... ..+.++||||-... . .....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 4689999999999999999998743211 0011011111111222223332 23899999993211 1 11222
Q ss_pred H--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848 88 Y--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (170)
Q Consensus 88 ~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~ 151 (170)
+ .+..+.+++++++.+.-....+.. +......+.|+++++||+|.......+...+.++
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~ 299 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYK 299 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHH
T ss_pred hccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHHHHHHHH
Confidence 2 256788899998753322221110 2222335689999999999987666666655554
No 214
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.06 E-value=1.1e-09 Score=83.84 Aligned_cols=84 Identities=21% Similarity=0.347 Sum_probs=57.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcc-cCCCCCCCcccCCcceeEEEEEecC-----------------eEEEEEEcCC
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG 77 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~D~~G 77 (170)
...+++++|++|+|||||+|++.+... ...........++.+ .+.+.+ ..+.+||+||
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G----~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA----KVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE----EEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceee----eeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 457999999999999999999987322 222222222223322 233332 4689999999
Q ss_pred -------CCcchhhHHHHhhccCEEEEEEeCCC
Q 030848 78 -------QPGLRSIWEKYYEEAHAVVFVIDAAC 103 (170)
Q Consensus 78 -------~~~~~~~~~~~~~~~~~~i~v~d~~~ 103 (170)
.+.+...+...++.+|++++|+|+.+
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33455556677799999999999864
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.05 E-value=1.2e-09 Score=79.76 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=62.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC---cccCCcceeEEEEEec----CeEEEEEEcCCCCc---------
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVS----NSKLVFWDLGGQPG--------- 80 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~i~D~~G~~~--------- 80 (170)
+++++++|++|+|||||+|.+.+......+...- ....+.......+..+ ...+.++|++|--.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999998754433221100 0011111111111111 23689999998211
Q ss_pred -chhh----HHHHh--------------hccCEEEEEEeCC-CcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848 81 -LRSI----WEKYY--------------EEAHAVVFVIDAA-CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (170)
Q Consensus 81 -~~~~----~~~~~--------------~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~ 140 (170)
.... +...+ .++++.++++|.. .+-.-.+ ...+..+.. . .+++++++|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----c-CcEEEEEeccccCCH
Confidence 1111 11111 1258889999854 2222222 333333322 2 789999999998764
Q ss_pred CC
Q 030848 141 VS 142 (170)
Q Consensus 141 ~~ 142 (170)
..
T Consensus 156 ~e 157 (270)
T 3sop_A 156 EE 157 (270)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 216
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.97 E-value=3.4e-10 Score=83.95 Aligned_cols=84 Identities=14% Similarity=0.020 Sum_probs=61.4
Q ss_pred CCcchhhHHHHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCcc
Q 030848 78 QPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLK 153 (170)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~ 153 (170)
++++......+++++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.++.. .++..+.++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-- 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-- 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH--
Confidence 5555555556889999999999999886 78777777765543 5789999999999975421 333444443
Q ss_pred ccccceeEEEeeeccCC
Q 030848 154 KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 154 ~~~~~~~~~~~~Sa~~g 170 (170)
....+++++||++|
T Consensus 140 ---~~g~~~~~~SA~~g 153 (302)
T 2yv5_A 140 ---DAGYDVLKVSAKTG 153 (302)
T ss_dssp ---HTTCEEEECCTTTC
T ss_pred ---HCCCeEEEEECCCC
Confidence 23458999999986
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.78 E-value=8.9e-08 Score=75.44 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=64.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccC------CC--CCCCcc-------cCCcceeEEE-----------------E
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV------EG--LPPDRI-------VPTVGLNIGR-----------------I 63 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~------~~--~~~~~~-------~~~~~~~~~~-----------------~ 63 (170)
+...|+++|.+|+||||+++.+....... .. .+.... ....++.+.. .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999996321111 00 000000 0000011111 0
Q ss_pred EecCeEEEEEEcCCCCcch----hhHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcE-EEEeeCCC
Q 030848 64 EVSNSKLVFWDLGGQPGLR----SIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQD 136 (170)
Q Consensus 64 ~~~~~~~~i~D~~G~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~v~nK~D 136 (170)
...+..+.|+||||..... ...... ...+|.+++|+|+........ ....+.. ..|+ .+++||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh-----hcCceEEEEeCCc
Confidence 1146789999999965321 111111 237899999999986543211 1222211 1454 89999999
Q ss_pred ccccC
Q 030848 137 LPDAV 141 (170)
Q Consensus 137 ~~~~~ 141 (170)
.....
T Consensus 252 ~~~~~ 256 (504)
T 2j37_W 252 GHAKG 256 (504)
T ss_dssp SCCCC
T ss_pred cccch
Confidence 87543
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.66 E-value=1.9e-07 Score=71.92 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=73.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCC----cchhhHHH-Hh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQP----GLRSIWEK-YY 89 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~----~~~~~~~~-~~ 89 (170)
....++++|++|+|||||+|.+.+......+.-.....++... ........ ..+.+||++|-. ........ .+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 3457999999999999999999885433222211111111111 11122111 358999999832 22222222 12
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc---------ccCCHHHHHhHhCccc-----c
Q 030848 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP---------DAVSADELARYLDLKK-----L 155 (170)
Q Consensus 90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~---------~~~~~~~~~~~~~~~~-----~ 155 (170)
...+..++ ++..... ..-......+.. .+.|++++.||.|+. +....+++.+.++... .
T Consensus 147 ~~~~~~~~-lS~G~~~--kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRFK--KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCCC--HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCcc--HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34455554 6665211 111222223333 367999999999974 2345555555544221 0
Q ss_pred c-cceeEEEeeec
Q 030848 156 D-ERVCMFEAVSG 167 (170)
Q Consensus 156 ~-~~~~~~~~~Sa 167 (170)
. .....++.+|+
T Consensus 220 ~g~~~~~iiliSs 232 (413)
T 1tq4_A 220 NGIAEPPIFLLSN 232 (413)
T ss_dssp TTCSSCCEEECCT
T ss_pred cCCCCCcEEEEec
Confidence 0 11235677787
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.57 E-value=7.9e-08 Score=70.52 Aligned_cols=58 Identities=28% Similarity=0.384 Sum_probs=34.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 78 (170)
...++++++|.+|+|||||+|++.+......+..+ ..|.... .+.. +..+.+|||||-
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~---g~T~~~~--~~~~-~~~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP---GITTSQQ--WVKV-GKELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------C--CEEE-TTTEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCC---CeeeeeE--EEEe-CCCEEEEECcCc
Confidence 45689999999999999999999863211111111 1111111 1222 457999999993
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.55 E-value=6.8e-08 Score=70.86 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=55.5
Q ss_pred EEEcCCCC-cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHh
Q 030848 72 FWDLGGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL 150 (170)
Q Consensus 72 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~ 150 (170)
+-..||+. .........+..+|+++.|+|++++.+.... .+..++ .+.|.++++||+|+.+....+...+++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44578876 4455667778999999999999998765421 122222 478999999999997743333444444
Q ss_pred CccccccceeEEEeeeccCC
Q 030848 151 DLKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 151 ~~~~~~~~~~~~~~~Sa~~g 170 (170)
+ ....+++++||++|
T Consensus 76 ~-----~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 76 E-----NQGIRSLSINSVNG 90 (282)
T ss_dssp H-----TTTCCEEECCTTTC
T ss_pred H-----hcCCcEEEEECCCc
Confidence 3 23447889999875
No 221
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.51 E-value=1.9e-07 Score=75.42 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
..++|+|++|||||||++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998753
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.48 E-value=3.9e-07 Score=73.05 Aligned_cols=64 Identities=25% Similarity=0.297 Sum_probs=40.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE---EecCeEEEEEEcCCC
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI---EVSNSKLVFWDLGGQ 78 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 78 (170)
..+..+|+|+|.+|+|||||+|++.+....+ .........|.+...... ...+..+.++||||-
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence 5677899999999999999999998742211 111112223333321111 124578999999993
No 223
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.44 E-value=7.4e-08 Score=73.25 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=55.7
Q ss_pred CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-CHHHHHhHh----C
Q 030848 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-SADELARYL----D 151 (170)
Q Consensus 77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-~~~~~~~~~----~ 151 (170)
.++.+...+..+.+.++++++|+|++++. ..|...+.... .+.|+++|+||+|+.+.. ..++..+.+ +
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 46778888888888999999999999752 22322332222 378999999999997643 333343332 2
Q ss_pred ccccccceeEEEeeeccCC
Q 030848 152 LKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 152 ~~~~~~~~~~~~~~Sa~~g 170 (170)
..+. ...+++++||++|
T Consensus 128 ~~g~--~~~~v~~iSA~~g 144 (368)
T 3h2y_A 128 QLGL--KPEDVFLISAAKG 144 (368)
T ss_dssp HTTC--CCSEEEECCTTTC
T ss_pred HcCC--CcccEEEEeCCCC
Confidence 1111 1237899999986
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.43 E-value=1.1e-07 Score=68.95 Aligned_cols=56 Identities=27% Similarity=0.376 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 79 (170)
++++++|.+|+|||||+|++.+......+.. ...|.... .+.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~---~g~T~~~~--~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ---PGITKGIQ--WFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------CCSC--EEEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC---CCCccceE--EEEe-CCCEEEEECCCcc
Confidence 6999999999999999999986322111111 01111111 1222 3578999999943
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.40 E-value=2.3e-06 Score=66.28 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=63.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCC--------CCCC-------cccCCcceeEEEE-----------------E
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------LPPD-------RIVPTVGLNIGRI-----------------E 64 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~-----------------~ 64 (170)
...|+++|.+|+||||++..+......... .... .+....++..... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 567999999999999999998643221100 0000 0001111111110 0
Q ss_pred ecCeEEEEEEcCCCCcch----hhHHH--HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848 65 VSNSKLVFWDLGGQPGLR----SIWEK--YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (170)
Q Consensus 65 ~~~~~~~i~D~~G~~~~~----~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~ 138 (170)
..+..+.|+||||..... ..... ....+|.+++|+|+...... ......+... -.+..+++||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCc
Confidence 124689999999943321 11111 12357899999998754322 2222333322 23557999999975
Q ss_pred c
Q 030848 139 D 139 (170)
Q Consensus 139 ~ 139 (170)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 4
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.40 E-value=1.3e-07 Score=71.95 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=55.5
Q ss_pred CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-CHHHHHhH----hC
Q 030848 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-SADELARY----LD 151 (170)
Q Consensus 77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-~~~~~~~~----~~ 151 (170)
.++.+++....+++.++++++|+|++++.+ .+...+.... .+.|+++|+||+|+.+.. ..++..+. ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 478888888888899999999999998763 1111121112 367999999999997643 33333333 22
Q ss_pred ccccccceeEEEeeeccCC
Q 030848 152 LKKLDERVCMFEAVSGYDG 170 (170)
Q Consensus 152 ~~~~~~~~~~~~~~Sa~~g 170 (170)
..+. ...+++.+||++|
T Consensus 130 ~~g~--~~~~v~~iSA~~g 146 (369)
T 3ec1_A 130 ELGL--CPVDVCLVSAAKG 146 (369)
T ss_dssp TTTC--CCSEEEECBTTTT
T ss_pred HcCC--CcccEEEEECCCC
Confidence 1121 1237889999986
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.37 E-value=4.2e-07 Score=70.42 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=40.1
Q ss_pred cCeEEEEEEcCCCCcchhhH-H---HH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCC-c-EEEEeeCCCc
Q 030848 66 SNSKLVFWDLGGQPGLRSIW-E---KY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA-P-LLILANKQDL 137 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~~~-~---~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-ii~v~nK~D~ 137 (170)
.+..+.|+||||........ . .. +..+|.+++|+|+.... +.......+ . ... | ..+++||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 45679999999965532211 1 11 12589999999986543 222222222 1 123 4 7899999998
Q ss_pred cc
Q 030848 138 PD 139 (170)
Q Consensus 138 ~~ 139 (170)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.17 E-value=6e-06 Score=63.90 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=62.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCC--------CCCc-------ccCCcceeEEE-----------------EE
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--------PPDR-------IVPTVGLNIGR-----------------IE 64 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--------~~~~-------~~~~~~~~~~~-----------------~~ 64 (170)
...|+++|++|+||||++..+.......... +... +....+..... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4578999999999999999985322211000 0000 00011111110 00
Q ss_pred ecCeEEEEEEcCCCCc--c----hhhHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848 65 VSNSKLVFWDLGGQPG--L----RSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136 (170)
Q Consensus 65 ~~~~~~~i~D~~G~~~--~----~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D 136 (170)
..+..+.++||||... . ....... .-..+.+++|+|+............+... -.+..+++||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1256789999999543 1 1111111 12468999999987653333333333222 134688999999
Q ss_pred ccc
Q 030848 137 LPD 139 (170)
Q Consensus 137 ~~~ 139 (170)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 753
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.09 E-value=1.5e-05 Score=58.88 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=40.3
Q ss_pred cCeEEEEEEcCCCCc--chh-hHH-----HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCC
Q 030848 66 SNSKLVFWDLGGQPG--LRS-IWE-----KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQD 136 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D 136 (170)
.+..+.++||||... ... ... .....+|.+++|+|+... .+.......+.. ..+ ..+++||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 456799999999766 322 111 123568999999998643 222222233222 234 678999999
Q ss_pred ccc
Q 030848 137 LPD 139 (170)
Q Consensus 137 ~~~ 139 (170)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 753
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.01 E-value=2.5e-06 Score=61.86 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=50.0
Q ss_pred cCCCCc-chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcc
Q 030848 75 LGGQPG-LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLK 153 (170)
Q Consensus 75 ~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~ 153 (170)
.||+.. ........+.++|+++.|+|+++|.+..... +... +.|.++++||+|+.+....++..+.++
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~ll---~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VDFS---RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SCCT---TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HHhc---CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 477553 3345666779999999999999886653210 0111 789999999999987433334444443
Q ss_pred ccccceeEEEeeeccCC
Q 030848 154 KLDERVCMFEAVSGYDG 170 (170)
Q Consensus 154 ~~~~~~~~~~~~Sa~~g 170 (170)
....++ .+||++|
T Consensus 73 ---~~g~~v-~iSa~~~ 85 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGE 85 (262)
T ss_dssp ---HTTCCE-EECCTTS
T ss_pred ---HcCCeE-EEECCCC
Confidence 223346 8898875
No 231
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.94 E-value=6.3e-05 Score=58.46 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
..+-.-|.|+|++++|||+|+|.+.+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 445667899999999999999999864
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.90 E-value=7.5e-06 Score=60.64 Aligned_cols=74 Identities=16% Similarity=0.042 Sum_probs=48.2
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----HHHHHhHhCccccccceeEEE
Q 030848 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFE 163 (170)
Q Consensus 88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 163 (170)
.+.++|.+++|+|+.+|..-....+-+..... ..+.|.++|+||+|+.++.. .+++.+.++ ....+++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g~~v~ 154 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIGYDVY 154 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHTCCEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCCCeEE
Confidence 46899999999999977654433222222222 25788999999999987533 344555554 2334677
Q ss_pred eeeccC
Q 030848 164 AVSGYD 169 (170)
Q Consensus 164 ~~Sa~~ 169 (170)
.+||++
T Consensus 155 ~~sa~~ 160 (307)
T 1t9h_A 155 LTSSKD 160 (307)
T ss_dssp ECCHHH
T ss_pred EEecCC
Confidence 888764
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.87 E-value=9.5e-05 Score=57.32 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=38.9
Q ss_pred cCeEEEEEEcCCCCcch-hhHH-----HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcc
Q 030848 66 SNSKLVFWDLGGQPGLR-SIWE-----KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLP 138 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~ 138 (170)
.+..+.|+||||..... .... .....++.+++|+|+..... .......+.. ..+ .-+++||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-----cCCCeEEEEecCCCC
Confidence 35679999999965432 1111 12346889999999875432 2222222211 122 34689999975
Q ss_pred cc
Q 030848 139 DA 140 (170)
Q Consensus 139 ~~ 140 (170)
..
T Consensus 254 ~~ 255 (433)
T 2xxa_A 254 AR 255 (433)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 234
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.84 E-value=7.1e-05 Score=55.37 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
.-.++++|++||||||+++.+.+...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34789999999999999999976433
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.84 E-value=9.3e-05 Score=55.32 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=61.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcccCCCC------CCCcc---------cCCcceeEEEE-----------------
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDRI---------VPTVGLNIGRI----------------- 63 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------~~~~~---------~~~~~~~~~~~----------------- 63 (170)
+.-.++++|++|+||||+++.+.+......+. ..... ....++.+..-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 44678999999999999999996643322211 00000 00111111000
Q ss_pred EecCeEEEEEEcCCCCcc----hhhHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848 64 EVSNSKLVFWDLGGQPGL----RSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (170)
Q Consensus 64 ~~~~~~~~i~D~~G~~~~----~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~ 137 (170)
...+..+.++|++|.... ....... .-..|-.++++|+... ++.......+.... ..-.+++||.|.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~----~it~iilTKlD~ 280 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV----KIDGIILTKLDA 280 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS----CCCEEEEECGGG
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc----CCCEEEEeCcCC
Confidence 002346778999995432 1222211 1246888999997654 23333333333211 123788899996
Q ss_pred c
Q 030848 138 P 138 (170)
Q Consensus 138 ~ 138 (170)
.
T Consensus 281 ~ 281 (328)
T 3e70_C 281 D 281 (328)
T ss_dssp C
T ss_pred c
Confidence 3
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.83 E-value=6.6e-05 Score=58.93 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.-.++++|++||||||+++.|.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 346899999999999999999654
No 237
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.79 E-value=8e-06 Score=63.97 Aligned_cols=95 Identities=21% Similarity=0.273 Sum_probs=53.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCC--cchhhH---
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQP--GLRSIW--- 85 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~--~~~~~~--- 85 (170)
.....|+++|.+||||||+.+++....... ..++..+... ..........+||..|.+ .....+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-------~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~ 109 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-------GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALA 109 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-------CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999996521100 0011111000 000111334678888863 223332
Q ss_pred -----HHHhhccCEEEEEEeCCCcccHHHHHHHHHHH
Q 030848 86 -----EKYYEEAHAVVFVIDAACPSRFEDSKTALEKV 117 (170)
Q Consensus 86 -----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 117 (170)
..++..+++.++|+|.++. +.+....|....
T Consensus 110 ~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 110 ALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 4455567888999999987 344444444333
No 238
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.68 E-value=0.00043 Score=50.92 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=44.1
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCc
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDL 137 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-~v~nK~D~ 137 (170)
...+.|+|+|+....... ...+..+|.+|+|...+ ..+...+......+.......+.+++ +|+|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 357999999885443221 22457889999998754 34456665556555443223455655 89999984
No 239
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.68 E-value=0.0009 Score=45.99 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=47.4
Q ss_pred CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~ 139 (170)
...+.++|+|+... ......+..+|.+++++..+... ..+......+..... .++.++.+++|+.|...
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 46799999998663 33445567899999999877554 555555555543321 24567899999999543
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.63 E-value=3.5e-05 Score=52.58 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.+++++|++|+|||||++.+.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997754
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.52 E-value=5.3e-05 Score=51.54 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|++|||||||++.+.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998743
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.49 E-value=0.0025 Score=47.42 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.-.|+++|++|+||||++..+...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999888543
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.48 E-value=0.00023 Score=54.97 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcccCCCC------CCCc---------ccCCcceeEEEE--------------E---e
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDR---------IVPTVGLNIGRI--------------E---V 65 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------~~~~---------~~~~~~~~~~~~--------------~---~ 65 (170)
-.++++|++|+||||++..+.......... .... +....++..... . .
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~ 178 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH
Confidence 457888999999999999885433221110 0000 000011111110 0 1
Q ss_pred cCeEEEEEEcCCCCcchh-hHH---HH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 66 SNSKLVFWDLGGQPGLRS-IWE---KY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 66 ~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
.+..+.|+||||...... ... .. .-.++.+++|+|+... ++.......+.... ...-+++||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l----~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV----GVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT----CCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC----CceEEEEeCcCCcc
Confidence 345799999999644321 111 11 1257889999998643 22222223332111 12467889998643
No 244
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.48 E-value=6.9e-05 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLK 38 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~ 38 (170)
+...|+++|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999997
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.47 E-value=6.7e-05 Score=51.92 Aligned_cols=24 Identities=42% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++|+|||||++.+.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999997754
No 246
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.46 E-value=8.5e-05 Score=51.59 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+...++++|+.|||||||++.+.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45567999999999999999999764
No 247
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.43 E-value=9.1e-05 Score=55.96 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++|+|||||+|.|.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 368999999999999999998743
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.41 E-value=8.8e-05 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++||||||+++.+.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999997753
No 249
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.39 E-value=0.00012 Score=50.99 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.+...++|+|++|||||||++.+.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999997643
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.38 E-value=9.9e-05 Score=50.43 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHHhhcc
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
++++|++||||||+++.+.+..+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 68999999999999999987543
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.38 E-value=9.6e-05 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.++++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999763
No 252
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.38 E-value=0.00032 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
-.++++|++|+|||||+|.+. ....
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 367999999999999999998 5443
No 253
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.37 E-value=0.00011 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-++++|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999998754
No 254
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.36 E-value=0.00025 Score=53.59 Aligned_cols=73 Identities=18% Similarity=0.023 Sum_probs=42.6
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCccccccceeEEEee
Q 030848 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKLDERVCMFEAV 165 (170)
Q Consensus 89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 165 (170)
..++|.+++|... +|..-....+-+..... ..+.|.++|+||+|+.++.. .++....+. ....+++.+
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~---~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCE---TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLMV 198 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHH---HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEEC
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEEE
Confidence 4788999988665 45433332222211111 13677899999999976533 222333333 344568889
Q ss_pred eccCC
Q 030848 166 SGYDG 170 (170)
Q Consensus 166 Sa~~g 170 (170)
||++|
T Consensus 199 Sa~~~ 203 (358)
T 2rcn_A 199 SSHTQ 203 (358)
T ss_dssp BTTTT
T ss_pred ecCCC
Confidence 99875
No 255
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.36 E-value=4.9e-05 Score=56.29 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.++++|++|+|||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999763
No 256
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.34 E-value=0.00012 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
--++++|++|||||||++.+.+..+
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999987544
No 257
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.32 E-value=0.00013 Score=51.29 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++|+|||||++.+.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999998754
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.31 E-value=0.0001 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|||||||++.+.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999774
No 259
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.27 E-value=0.00014 Score=48.98 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.9
Q ss_pred eEEEEEcCCCCChHHHHHH
Q 030848 18 FHVLILGIDKAGKTTLLEK 36 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~ 36 (170)
--++++|++|||||||++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3578999999999999994
No 260
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.27 E-value=0.00019 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
.++++|+.|+|||||++.+.+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678999999999999999977543
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.27 E-value=0.00016 Score=50.05 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
+.--++++|++|+|||||+++|....+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334688999999999999999986543
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.27 E-value=0.00017 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|++||||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.26 E-value=0.00019 Score=49.53 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+...|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999965
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.25 E-value=0.0002 Score=49.18 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHhhcc
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
|+++||+||||+||++++....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999976433
No 265
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.24 E-value=0.0002 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++.+.|+++|++||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999999854
No 266
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.24 E-value=0.00018 Score=50.10 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.--|+++|++||||||+++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458899999999999999997743
No 267
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.24 E-value=0.0002 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999954
No 268
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.24 E-value=0.00018 Score=52.13 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
.++++|+.|||||||++.+.+...
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 578999999999999999977443
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.23 E-value=0.00022 Score=49.13 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
...++++|++||||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999997643
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.23 E-value=0.00013 Score=51.52 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999774
No 271
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.22 E-value=0.00021 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999954
No 272
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.22 E-value=0.00029 Score=47.07 Aligned_cols=26 Identities=31% Similarity=0.217 Sum_probs=22.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
+.-.++++|+.|+|||||++.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468999999999999999998855
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.21 E-value=0.0002 Score=47.74 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 030848 18 FHVLILGIDKAGKTTLLEKL 37 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l 37 (170)
+.|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 274
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.21 E-value=0.0002 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
..|+++|++||||||+.+.+....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999997643
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.21 E-value=0.00023 Score=47.50 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.|+++|++||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.20 E-value=0.00029 Score=47.38 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+...|+++|++||||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999854
No 277
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.20 E-value=0.00017 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.++++|+.|||||||++.+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999774
No 278
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.17 E-value=0.00025 Score=48.91 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+|+++|++||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999865
No 279
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.17 E-value=0.00017 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|||||||++.+.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999997743
No 280
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.17 E-value=0.00024 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999965
No 281
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.16 E-value=0.00024 Score=49.03 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999965
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.16 E-value=0.0003 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999975
No 283
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.16 E-value=0.00018 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|||||||++.+.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999774
No 284
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.16 E-value=0.00028 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|++||||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 285
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.15 E-value=0.0002 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|+|||||++.+.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997743
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.15 E-value=0.00018 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999774
No 287
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.15 E-value=0.00018 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999774
No 288
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.15 E-value=0.00035 Score=47.38 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++||||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.14 E-value=0.00021 Score=50.59 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999774
No 290
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.13 E-value=0.00026 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|||||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997743
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.12 E-value=0.00028 Score=51.04 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
+.-.++++|++||||||+++.+.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 44468999999999999999997643
No 292
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.11 E-value=0.00037 Score=47.43 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...+|+++|++||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999865
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.11 E-value=0.00021 Score=50.95 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999774
No 294
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.11 E-value=0.00033 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++||||||+.+.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 295
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.11 E-value=0.012 Score=40.84 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=45.2
Q ss_pred CeEEEEEEcCCC-CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 67 NSKLVFWDLGGQ-PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 67 ~~~~~i~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
...+.++|+|+. .... ....+..+|.+|+++..+ ..+...+...+..+.... +.++.+++|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~~--~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDED--LEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSSH--HHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcHH--HHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 467999999987 4432 234567899999998765 334455555555554421 456889999998654
No 296
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.10 E-value=0.00033 Score=48.08 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.|+++|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999965
No 297
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.09 E-value=0.00036 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 298
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.09 E-value=0.00023 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999774
No 299
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.09 E-value=0.00029 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.147 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.++++|+.|+|||||++.+.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999886
No 300
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.09 E-value=0.00023 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999999774
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.09 E-value=0.00029 Score=48.44 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
+++++|++|+||||+++.+.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999987544
No 302
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.09 E-value=0.00036 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999854
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.08 E-value=0.00026 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|+|||||++.+.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997743
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.08 E-value=0.00044 Score=47.69 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+...|+++|++||||||+.+.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45567999999999999999999663
No 305
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.08 E-value=0.00045 Score=46.71 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
..-.++++|++|+|||||++.+.+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999997643
No 306
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.00066 Score=45.68 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=25.1
Q ss_pred HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
++.........-.+++.|++|+|||++++.+...
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333434444566899999999999999999653
No 307
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.08 E-value=0.00043 Score=47.68 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...+.|+++|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999854
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.07 E-value=0.00034 Score=51.69 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
+.-.++++|++|+|||||++.|.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34578999999999999999997643
No 309
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.07 E-value=0.00042 Score=49.41 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++.++|+++|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3668999999999999999999954
No 310
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.07 E-value=0.00035 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|++||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999965
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.06 E-value=0.00047 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++...|+++|.+||||||+.+.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999965
No 312
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.06 E-value=0.00037 Score=48.53 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.06 E-value=0.00046 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999964
No 314
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.05 E-value=0.00028 Score=51.51 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|+|||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999997743
No 315
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.05 E-value=0.00036 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998743
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.05 E-value=0.00034 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|+|||||++.+.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999997743
No 317
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.05 E-value=0.00034 Score=50.21 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999884
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.05 E-value=0.00042 Score=47.07 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|++||||||+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999965
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.05 E-value=0.00071 Score=50.17 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.+...++++|++|||||||++.|.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 455679999999999999999997643
No 320
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.04 E-value=0.00043 Score=47.71 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++||||||+.+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999964
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.04 E-value=0.00046 Score=49.19 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
+...|+++|+.||||||+++.+.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999663
No 322
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.04 E-value=0.00045 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+...|+++|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.03 E-value=0.00048 Score=47.66 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
....|+++|++||||||+.+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999763
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.00046 Score=46.94 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 325
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.03 E-value=0.0003 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|+|||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997743
No 326
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.03 E-value=0.00031 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999774
No 327
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.02 E-value=0.00041 Score=50.32 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 328
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.02 E-value=0.00025 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=15.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH-hh
Q 030848 18 FHVLILGIDKAGKTTLLEKLK-SV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~-~~ 40 (170)
-.++++|++||||||+++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999998 64
No 329
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.01 E-value=0.00047 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++|+++|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
No 330
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=0.00038 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++|+|||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 367899999999999999997643
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.01 E-value=0.0007 Score=50.04 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.....|+++|++|||||||++.+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999999764
No 332
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.00 E-value=0.00073 Score=50.31 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=22.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+..+-|+++|++|||||||++.+...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345567999999999999999999654
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00056 Score=47.20 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999965
No 334
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.99 E-value=0.00048 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..++|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999999854
No 335
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.99 E-value=0.0005 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999954
No 336
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.97 E-value=0.00057 Score=46.98 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++||||||+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999976
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.97 E-value=0.00053 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+...|+++|++||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999854
No 338
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0082 Score=44.58 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=26.4
Q ss_pred HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+.........-.+++.|+||+|||++++.+...
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344444566778999999999999999999653
No 339
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.96 E-value=0.001 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.....|+++|++||||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
No 340
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.95 E-value=0.00024 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++|+|||||++.+.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 368999999999999999997743
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.94 E-value=0.00069 Score=46.61 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.....|+++|.+||||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999854
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.94 E-value=0.00054 Score=48.15 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999853
No 343
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.94 E-value=0.00065 Score=46.58 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+...|+++|++||||||+.+.|..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999865
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.93 E-value=0.00048 Score=52.09 Aligned_cols=26 Identities=38% Similarity=0.615 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
.-+++++|++|+|||||++.|.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999977533
No 345
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.93 E-value=0.00051 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-++++|++|+|||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 346
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.93 E-value=0.0006 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
-.++++|++|||||||++.+.+..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4789999999999999999987543
No 347
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.93 E-value=0.0025 Score=49.52 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.4
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 13 FTKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..++-.-|.|+|+.++|||+|+|.+..
T Consensus 63 ~~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp TTSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCchhHHHHHHHH
Confidence 355667788999999999999997753
No 348
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.93 E-value=0.0005 Score=49.73 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 349
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.91 E-value=0.00061 Score=51.54 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
+.-.++++|++|||||||++.+.+..+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 334789999999999999999987433
No 350
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.91 E-value=0.00064 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....|+++|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999964
No 351
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.91 E-value=0.0012 Score=48.50 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..+...|+|+|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998854
No 352
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.90 E-value=0.00054 Score=48.53 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030848 19 HVLILGIDKAGKTTLLEKLK 38 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~ 38 (170)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.90 E-value=0.00029 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+.++|++|||||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 354
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.89 E-value=0.00062 Score=46.18 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..++++|++|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4588999999999999999976
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.89 E-value=0.00056 Score=46.01 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.89 E-value=0.00068 Score=46.08 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.|+++|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 357
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.88 E-value=0.0008 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
+.-.++++|++||||||+++.+.+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33489999999999999999997643
No 358
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.88 E-value=0.00084 Score=45.06 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=25.1
Q ss_pred HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+.........-.+++.|++|+|||+++..+...
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333444567899999999999999999663
No 359
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.88 E-value=0.00048 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|++|||||||++.+.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999997743
No 360
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.87 E-value=0.00069 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+.|+++|++||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999854
No 361
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.87 E-value=0.00049 Score=52.00 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-++++|++|+|||||++.+.+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999997743
No 362
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.86 E-value=0.00061 Score=47.68 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
No 363
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.85 E-value=0.00091 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|.+||||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 364
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.84 E-value=0.00064 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|+.|+|||||++.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999774
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.83 E-value=0.00085 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....|+++|++||||||+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999965
No 366
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.83 E-value=0.00082 Score=45.86 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-|++.|++||||||+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 367
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.82 E-value=0.00094 Score=46.53 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+.|+++|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999854
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.82 E-value=0.00089 Score=47.89 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999998854
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.82 E-value=0.00095 Score=45.03 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999965
No 370
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.82 E-value=0.0007 Score=45.70 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++||||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999999999964
No 371
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.81 E-value=0.00062 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.-.++++|++|+|||+|++.+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999997743
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.81 E-value=0.00077 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLK 38 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~ 38 (170)
+...|+++|++||||||+.+.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999996
No 373
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.80 E-value=0.0006 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|++|+|||||++.+.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999997743
No 374
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.79 E-value=0.00061 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|++|+|||||++.+.+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999997743
No 375
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.79 E-value=0.0017 Score=50.07 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
.+.-.++|+|++||||||+++.+.+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3444689999999999999999977443
No 376
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.78 E-value=0.00064 Score=51.39 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|++|+|||||++.+.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999997743
No 377
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.78 E-value=0.00063 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=16.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 378
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.77 E-value=0.001 Score=46.98 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....+|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999854
No 379
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.76 E-value=0.00096 Score=45.57 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|++||||||+.+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.76 E-value=0.001 Score=44.84 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...+.++|++||||||++.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999965
No 381
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.76 E-value=0.00068 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|++|+|||||++.+.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999997743
No 382
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.75 E-value=0.0012 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...+.|+++|.+||||||+.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999998854
No 383
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.75 E-value=0.00087 Score=48.11 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.|+++|++||||||+.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.75 E-value=0.00089 Score=50.84 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
+.-.++++|++||||||+++.+.+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34469999999999999999997643
No 385
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.74 E-value=0.00071 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|++|+|||||++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999999774
No 386
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.73 E-value=0.00083 Score=45.47 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 387
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.73 E-value=0.00072 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|++|+|||||++.+.+..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 56899999999999999997753
No 388
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.73 E-value=0.00091 Score=48.61 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999977
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.72 E-value=0.0012 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 390
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.71 E-value=0.0011 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
..++++|++||||||+++.+.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998743
No 391
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.71 E-value=0.0012 Score=44.06 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-.|+++|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999854
No 392
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.71 E-value=0.053 Score=40.66 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+++.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999763
No 393
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.70 E-value=0.00079 Score=48.23 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.70 E-value=0.0011 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.|+++|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 395
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.70 E-value=0.00098 Score=49.19 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.-.++++|++||||||+++.+.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999996643
No 396
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.033 Score=41.27 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+.-.+++.|++|+|||++++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 335699999999999999999976
No 397
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.67 E-value=0.0011 Score=47.36 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
++++|++|+||||+++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999977
No 398
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.66 E-value=0.0021 Score=44.94 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..-.+++.|++|+|||+++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999965
No 399
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.65 E-value=0.0011 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.+++|+.|+||||++.+|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999653
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.64 E-value=0.00046 Score=47.82 Aligned_cols=21 Identities=52% Similarity=0.732 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-|+++|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999965
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.63 E-value=0.00059 Score=51.39 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999997743
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.59 E-value=0.0013 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..+.|.++|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999853
No 403
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.58 E-value=0.0013 Score=46.42 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=22.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+..-|+++|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999764
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.57 E-value=0.0016 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLK 38 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~ 38 (170)
....|+++|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999985
No 405
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.57 E-value=0.0012 Score=50.37 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|++|+|||||++.+.+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999999774
No 406
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.54 E-value=0.0018 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
=.++++|+.|+|||||++.+.+...+
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 36899999999999999999885443
No 407
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.52 E-value=0.0026 Score=43.75 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999965
No 408
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.52 E-value=0.0015 Score=48.78 Aligned_cols=23 Identities=43% Similarity=0.437 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999874
No 409
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.52 E-value=0.00057 Score=51.56 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.++++|++|+|||||++.+.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999774
No 410
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.52 E-value=0.0019 Score=50.72 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
-.++++|+.|+|||||++.+.+....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 45789999999999999999775443
No 411
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.52 E-value=0.0016 Score=45.42 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999964
No 412
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.51 E-value=0.0015 Score=47.28 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
++++|++|+|||||++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999977
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.51 E-value=0.0022 Score=44.52 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.....|+++|.+||||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999865
No 414
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.51 E-value=0.0017 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
-.++++|++|+|||||++.+.+...+
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 36899999999999999999775443
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.50 E-value=0.0015 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.-.|+++|++|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999954
No 416
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0014 Score=51.20 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
..-+++++|+.|||||||++.+.+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44578999999999999999997643
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.48 E-value=0.0024 Score=44.87 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-|+++|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999998854
No 418
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.46 E-value=0.0018 Score=51.54 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
=.++++|+.|+|||||++.+.+...+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 35789999999999999999875443
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.46 E-value=0.0017 Score=49.04 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.-.++++|++||||||+++.+.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3468899999999999999996643
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.45 E-value=0.0024 Score=45.12 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
....|++.|++||||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999997643
No 421
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.44 E-value=0.0021 Score=45.49 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..+++.++|++||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 568999999999999999998844
No 422
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.0034 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...-.+++.|++|+|||++++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3455699999999999999999976
No 423
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.43 E-value=0.0017 Score=42.74 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=17.7
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+++|+.|+||||++.++.-
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999853
No 424
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.41 E-value=0.0015 Score=52.44 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++|+|||||++.+.+..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 368999999999999999997743
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0022 Score=51.79 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCC
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVE 45 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~ 45 (170)
.++++|+.|+|||||++.+.+...+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P~~ 131 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKPNL 131 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 689999999999999999987544433
No 426
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.065 Score=41.53 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=25.2
Q ss_pred HHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+|...--++.--|++.||||+|||++++++.+
T Consensus 206 ~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34443345556799999999999999999976
No 427
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.40 E-value=0.0019 Score=47.15 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-++++|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999996643
No 428
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.40 E-value=0.0021 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
=+++++|+.|+|||||++.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999874
No 429
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.40 E-value=0.002 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...++++|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999976
No 430
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.40 E-value=0.0046 Score=44.53 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
......+++.|++|+|||+++..+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 55667899999999999999999976
No 431
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.36 E-value=0.0025 Score=47.28 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.++++|+.|||||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999874
No 432
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.33 E-value=0.0022 Score=45.35 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=18.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+..-|++.|++||||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999965
No 433
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.32 E-value=0.0025 Score=44.15 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999976
No 434
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.32 E-value=0.0027 Score=51.32 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
=.++++|+.|+|||||++.+.+...+
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCC
Confidence 36899999999999999999875443
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.31 E-value=0.003 Score=44.60 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....|+++|++||||||+.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998854
No 436
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.31 E-value=0.0028 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999865
No 437
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.29 E-value=0.0016 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=17.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+...|++.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998854
No 438
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.29 E-value=0.003 Score=43.34 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999976
No 439
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.28 E-value=0.0016 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
.++++|++|+|||||++.+.+..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999997743
No 440
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.28 E-value=0.0017 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++|+|||||++.+.+..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 378999999999999999997743
No 441
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.26 E-value=0.0031 Score=43.27 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.|++.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.0031 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
.++++|+.|+|||||++.+.+...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 443
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.24 E-value=0.0034 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
.++++|+.|+|||||++.+.+....
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999875443
No 444
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.23 E-value=0.0029 Score=49.14 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.=+++++|++|+|||||++.+.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347899999999999999999873
No 445
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.22 E-value=0.0047 Score=45.31 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...-.+++.|++|+|||++++.+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3445699999999999999999976
No 446
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.22 E-value=0.0029 Score=44.48 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-++++|++|+|||||+..+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999976
No 447
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.20 E-value=0.0029 Score=48.14 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
+.-.++++|++|+|||||++.+.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3447899999999999999999763
No 448
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.18 E-value=0.0014 Score=52.63 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++|+|||||++.+.+..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368899999999999999997643
No 449
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.18 E-value=0.0035 Score=40.85 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.....|++.|++|+|||++...+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999976
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.17 E-value=0.0038 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccc
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
.++++|+.|+|||||++.+.+....
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999885443
No 451
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.17 E-value=0.23 Score=36.11 Aligned_cols=67 Identities=13% Similarity=0.019 Sum_probs=42.9
Q ss_pred eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
..+.|+|+|....... .....+.+|.+|+|+..+.. +...+......+... ....+-+|+|+.|...
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQN---GIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence 3699999998544332 23345779999999987643 445555555555432 2334568889998643
No 452
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.16 E-value=0.0032 Score=43.85 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+++.|++|+|||+++.++...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998763
No 453
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.13 E-value=0.0035 Score=43.59 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+++.|++|+|||+++..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999653
No 454
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.10 E-value=0.0031 Score=47.70 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.8
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+++|+.|+||||+++++..
T Consensus 26 ~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999963
No 455
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.09 E-value=0.0052 Score=44.94 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=21.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 14 ~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+....+++.|++|+|||+++..+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999988865
No 456
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.09 E-value=0.0077 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....+|+++|++|+||||+...+..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999988743
No 457
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.08 E-value=0.0047 Score=43.53 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....-|++.|..||||||+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999999854
No 458
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.08 E-value=0.002 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
-.++++|++|+|||||++.+.+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999997643
No 459
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.07 E-value=0.0042 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...-+++.|++|+|||++.+.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999999976
No 460
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.05 E-value=0.0037 Score=45.50 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+.-.+++.|++|+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456799999999999999999976
No 461
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.03 E-value=0.0062 Score=47.61 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=23.8
Q ss_pred hhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 10 ~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
....+...-+++++|++|+|||++++.+...
T Consensus 194 ~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3333344557899999999999999999653
No 462
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.03 E-value=0.017 Score=42.81 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....+++.|++|+|||++++.+..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 445699999999999999999966
No 463
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.03 E-value=0.0051 Score=45.89 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999977
No 464
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.00 E-value=0.0052 Score=43.72 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 334689999999999999999976
No 465
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.99 E-value=0.0055 Score=44.80 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.-.++++|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999999663
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0053 Score=49.57 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhcccCCC
Q 030848 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~ 46 (170)
.++++|+.|+|||||++.+.+......+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 3789999999999999999885544433
No 467
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.96 E-value=0.0045 Score=44.86 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 030848 19 HVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999865
No 468
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.95 E-value=0.0033 Score=55.11 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~~~~ 43 (170)
=++++||++|||||||++.+.+....
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCccC
Confidence 47899999999999999999774443
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.94 E-value=0.0032 Score=45.20 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=21.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
++...|++.|..||||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999965
No 470
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0078 Score=46.61 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=24.3
Q ss_pred HhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 9 ~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
|...--+..--|++.||||+|||++++++.+
T Consensus 207 f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 207 FKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3333334556799999999999999999976
No 471
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.93 E-value=0.0045 Score=42.95 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+.|+++|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.92 E-value=0.0048 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
..|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36899999999999999999653
No 473
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.92 E-value=0.0053 Score=45.12 Aligned_cols=116 Identities=19% Similarity=0.149 Sum_probs=60.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-----CCcccC-----------CcceeEEE-----------EEecCeE
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-----PDRIVP-----------TVGLNIGR-----------IEVSNSK 69 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-----~~~~~~-----------~~~~~~~~-----------~~~~~~~ 69 (170)
.-.++++|++|+||||++..+........+.. .+.+.+ ..++.... ....+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 34789999999999999999965433211100 000000 00110000 0124568
Q ss_pred EEEEEcCCCCcchh-h---HHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848 70 LVFWDLGGQPGLRS-I---WEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (170)
Q Consensus 70 ~~i~D~~G~~~~~~-~---~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~ 139 (170)
+.|+||+|...... . ....+. ..+.+++|+|++.. ...+..+...+. . -+ ..-+++||.|...
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~-~---l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS-S---VP-VNQYIFTKIDETT 253 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS-S---SC-CCEEEEECTTTCS
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh-c---CC-CCEEEEeCCCccc
Confidence 99999999554322 1 112222 35678889987632 233333322221 1 11 2345669999754
No 474
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.91 E-value=0.0054 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
..|+++|++||||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999965
No 475
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.90 E-value=0.0048 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
-.+++.|++|+|||++++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999976
No 476
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.90 E-value=0.005 Score=42.63 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...|+++|++|+|||++...+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999965
No 477
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.88 E-value=0.0057 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
...-|+++|.+||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999965
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.85 E-value=0.0046 Score=42.78 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+++|+.|+||||++.+|.-
T Consensus 26 ~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999943
No 479
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.83 E-value=0.0054 Score=41.75 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 030848 20 VLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~ 39 (170)
++|+|.++||||+|...+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999999975
No 480
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.0083 Score=44.68 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 481
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.82 E-value=0.0091 Score=44.35 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999663
No 482
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.80 E-value=0.042 Score=41.69 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....+++.|++|+|||+++..+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999976
No 483
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.79 E-value=0.0055 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
..-.+++.|++|+|||++++.+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999763
No 484
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0097 Score=45.99 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.+.--+++.||||+|||++++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3444599999999999999999976
No 485
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.75 E-value=0.0079 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
..|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999653
No 486
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.72 E-value=0.0045 Score=49.40 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=22.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~~~ 41 (170)
+...++++|++||||||+.+.|.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45679999999999999999997643
No 487
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.71 E-value=0.0065 Score=44.25 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999976
No 488
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.70 E-value=0.0083 Score=42.41 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
..|++.|..||||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999653
No 489
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.70 E-value=0.0033 Score=40.85 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHHh
Q 030848 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 15 ~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.....|++.|++|+|||++...+..
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCCcEEEECCCCccHHHHHHHHHH
Confidence 3456799999999999999999854
No 490
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.70 E-value=0.0087 Score=44.18 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-.++++|++|+||||++..+...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 46889999999999999999654
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.69 E-value=0.0085 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.-|+|+|++|||||+|...+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 3578999999999999999965
No 492
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.69 E-value=0.0069 Score=42.60 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030848 19 HVLILGIDKAGKTTLLEKLK 38 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~ 38 (170)
-++++|++|+|||+|+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999977774
No 493
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.64 E-value=0.007 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 030848 19 HVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 19 ~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
-+.++|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 494
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.01 Score=45.49 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+|...--++.--+++.||||+|||.+.+++.+
T Consensus 173 ~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 173 LFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 34443344555699999999999999999976
No 495
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.60 E-value=0.0049 Score=44.17 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKSV 40 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~~ 40 (170)
..+++.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999999763
No 496
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.58 E-value=0.015 Score=43.75 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHh
Q 030848 17 EFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 17 ~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.-.+++.|++|+|||++++.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999965
No 497
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.56 E-value=0.0098 Score=44.01 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHh
Q 030848 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 16 ~~~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
+...+++.|++|+|||+++..+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999976
No 498
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.54 E-value=0.3 Score=34.02 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=55.5
Q ss_pred eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHH
Q 030848 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELA 147 (170)
Q Consensus 68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~ 147 (170)
..+.|+|+|+.... .....+..+|.+++++..+ ..+...+......+.. ...+...+-+++|+.|.......+++.
T Consensus 119 yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~v~N~~~~~~~~~~~~~~ 194 (245)
T 3ea0_A 119 YDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKE-FEKPISRIEIILNRADTNSRITSDEIE 194 (245)
T ss_dssp CSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHT-CSSCCSCEEEEEESTTSCTTSCHHHHH
T ss_pred CCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHH-hCCCccceEEEEecCCCCCCCCHHHHH
Confidence 57999999986533 3344568899999999765 4455666666555543 333456688999999977666677777
Q ss_pred hHhC
Q 030848 148 RYLD 151 (170)
Q Consensus 148 ~~~~ 151 (170)
+.+.
T Consensus 195 ~~~~ 198 (245)
T 3ea0_A 195 KVIG 198 (245)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7665
No 499
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.51 E-value=0.0025 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHHhhcc
Q 030848 20 VLILGIDKAGKTTLLEKLKSVYS 42 (170)
Q Consensus 20 i~vvG~~~~GKSsl~~~l~~~~~ 42 (170)
++++|++|+|||||++.+.+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 36899999999999999977544
No 500
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.51 E-value=0.012 Score=43.57 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 030848 18 FHVLILGIDKAGKTTLLEKLKS 39 (170)
Q Consensus 18 ~~i~vvG~~~~GKSsl~~~l~~ 39 (170)
.-|+|+|++|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999999965
Done!