BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030849
(170 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449518382|ref|XP_004166221.1| PREDICTED: uncharacterized protein LOC101228874 [Cucumis sativus]
Length = 383
Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/139 (81%), Positives = 127/139 (91%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
+SGSP+MEDIEAF TTYRARLD+AE+AKS+PEN SLEVSSPGVERVVRIP EL+RFK+RA
Sbjct: 245 KSGSPNMEDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERA 304
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYVKY E VT S SESDGVF+L+SFD+E +CCTWG+ADV+INREKAGKGRPLSKKQRE
Sbjct: 305 MYVKYTNEVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQRE 364
Query: 152 WRLNTTFDSLRLVRLHSDC 170
WRL T FDSLRLVRL+SDC
Sbjct: 365 WRLETPFDSLRLVRLYSDC 383
>gi|449462174|ref|XP_004148816.1| PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus]
Length = 312
Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/139 (81%), Positives = 127/139 (91%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
+SGSP+MEDIEAF TTYRARLD+AE+AKS+PEN SLEVSSPGVERVVRIP EL+RFK+RA
Sbjct: 174 KSGSPNMEDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERA 233
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYVKY E VT S SESDGVF+L+SFD+E +CCTWG+ADV+INREKAGKGRPLSKKQRE
Sbjct: 234 MYVKYTNEVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQRE 293
Query: 152 WRLNTTFDSLRLVRLHSDC 170
WRL T FDSLRLVRL+SDC
Sbjct: 294 WRLETPFDSLRLVRLYSDC 312
>gi|255570398|ref|XP_002526158.1| conserved hypothetical protein [Ricinus communis]
gi|223534535|gb|EEF36234.1| conserved hypothetical protein [Ricinus communis]
Length = 306
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/139 (80%), Positives = 125/139 (89%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
+RSGSP+MEDIEAF TTYR LDEAE+AK+IP N +LEVSSPGVER+VRIP EL+RFKDR
Sbjct: 167 NRSGSPTMEDIEAFSTTYRTWLDEAELAKTIPTNIALEVSSPGVERIVRIPEELDRFKDR 226
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
+MYVKY ET SPSE+DGVFRLISFD+ETECCTWGLADVRINREK+GKGRPLSKKQR
Sbjct: 227 SMYVKYASETSGMESPSENDGVFRLISFDIETECCTWGLADVRINREKSGKGRPLSKKQR 286
Query: 151 EWRLNTTFDSLRLVRLHSD 169
EWRLNT FDSL LVRL+S+
Sbjct: 287 EWRLNTRFDSLLLVRLYSE 305
>gi|225457765|ref|XP_002264003.1| PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera]
gi|302142766|emb|CBI19969.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/140 (77%), Positives = 122/140 (87%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
++SGSPSM DIEAF + YRA+LDEAEIA S+PEN SLEVSSPGVERVV+IP EL+RFK+R
Sbjct: 176 NKSGSPSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKER 235
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
MYVKYV E V GS ESDG+FRL+SFD+ET CCTWGLADVRINR KAGKGRPLSKKQR
Sbjct: 236 PMYVKYVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQR 295
Query: 151 EWRLNTTFDSLRLVRLHSDC 170
EWRLNT FDSL LVRL+S+
Sbjct: 296 EWRLNTPFDSLCLVRLYSEI 315
>gi|147801247|emb|CAN61512.1| hypothetical protein VITISV_013332 [Vitis vinifera]
Length = 231
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/139 (78%), Positives = 122/139 (87%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
++SGSPSM DIEAF + YRA+LDEAEIA S+PEN SLEVSSPGVERVV+IP EL+RFK+R
Sbjct: 92 NKSGSPSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKER 151
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
MYVKYV E V GS ESDG+FRL+SFD+ET CCTWGLADVRINR KAGKGRPLSKKQR
Sbjct: 152 PMYVKYVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQR 211
Query: 151 EWRLNTTFDSLRLVRLHSD 169
EWRLNT FDSL LVRL+S+
Sbjct: 212 EWRLNTPFDSLCLVRLYSE 230
>gi|224062938|ref|XP_002300938.1| predicted protein [Populus trichocarpa]
gi|222842664|gb|EEE80211.1| predicted protein [Populus trichocarpa]
Length = 313
Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/139 (77%), Positives = 123/139 (88%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
++SGSP+MEDIEAF TTYRARLDEAE+AK+I EN +LEVSSPGVERVVRIP +L+RFKDR
Sbjct: 174 NKSGSPNMEDIEAFSTTYRARLDEAELAKTITENITLEVSSPGVERVVRIPEDLDRFKDR 233
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
AMYVKYV E S SESDGV RL+SFDMET+ CTWGLADVR+NREKAGKGRPLSKKQR
Sbjct: 234 AMYVKYVNEADAKDSSSESDGVLRLVSFDMETKYCTWGLADVRVNREKAGKGRPLSKKQR 293
Query: 151 EWRLNTTFDSLRLVRLHSD 169
EWRL+T F SLRLVR++ +
Sbjct: 294 EWRLDTPFHSLRLVRVYPE 312
>gi|356518601|ref|XP_003527967.1| PREDICTED: uncharacterized protein LOC100803868 [Glycine max]
Length = 304
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/138 (73%), Positives = 117/138 (84%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
+SGSPSMEDIEAF TTYRA+LDEAEIAK +P+N LEVSSPGVER+VRIP +L+RFKDR
Sbjct: 166 KSGSPSMEDIEAFSTTYRAKLDEAEIAKVVPDNICLEVSSPGVERIVRIPDDLDRFKDRP 225
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYVKY +E DGVF+L SFDMET+CCTWGLADV++NR+KAGKGRPL+KKQ E
Sbjct: 226 MYVKYAINDDQNNPAAEGDGVFKLESFDMETKCCTWGLADVKVNRQKAGKGRPLNKKQSE 285
Query: 152 WRLNTTFDSLRLVRLHSD 169
WRL+T FDSLR VRLHSD
Sbjct: 286 WRLSTPFDSLRFVRLHSD 303
>gi|356509322|ref|XP_003523399.1| PREDICTED: uncharacterized protein LOC100783320 [Glycine max]
Length = 307
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/138 (73%), Positives = 118/138 (85%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
+SGSPS+EDIEAF TYRA+LDEAE+AKS+P+N LEVSSPGVER+VRIP +L+RFK+R
Sbjct: 169 KSGSPSLEDIEAFSATYRAKLDEAELAKSVPDNICLEVSSPGVERIVRIPDDLDRFKERP 228
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYVKY +E DGVFRL SFDMET+CCTWGLADV++NR+KAGKGRPL+KKQRE
Sbjct: 229 MYVKYAINDDLNNPAAEGDGVFRLESFDMETKCCTWGLADVKVNRQKAGKGRPLNKKQRE 288
Query: 152 WRLNTTFDSLRLVRLHSD 169
WRL+T FDSLR VRLHSD
Sbjct: 289 WRLSTPFDSLRFVRLHSD 306
>gi|388510470|gb|AFK43301.1| unknown [Lotus japonicus]
Length = 327
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/166 (63%), Positives = 134/166 (80%), Gaps = 3/166 (1%)
Query: 4 GDEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPE 63
GD + R + N+ + + + +L ++SGSP++EDIEAF TTYRA+LDEAE+ KS+PE
Sbjct: 162 GDLQIYAFRTLLRNSAIQVRIEKL--SNKSGSPNIEDIEAFSTTYRAKLDEAELTKSVPE 219
Query: 64 NTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPS-ESDGVFRLISFDMET 122
N +LEVSSPGVERVVRIP +L+RFKDR+MYV+Y + + +PS E DGVF+L SFD++T
Sbjct: 220 NLTLEVSSPGVERVVRIPDDLDRFKDRSMYVRYAIDDDDSMNPSAEGDGVFKLESFDLDT 279
Query: 123 ECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHS 168
+ CTW LADVR+NREKAGKGRPL+KKQREWRL+T FDSLR VRLHS
Sbjct: 280 KYCTWSLADVRVNREKAGKGRPLNKKQREWRLSTPFDSLRFVRLHS 325
>gi|30699240|ref|NP_849898.1| uncharacterized protein [Arabidopsis thaliana]
gi|62320812|dbj|BAD93751.1| hypothetical protein [Arabidopsis thaliana]
gi|110742469|dbj|BAE99153.1| hypothetical protein [Arabidopsis thaliana]
gi|114050645|gb|ABI49472.1| At1g77122 [Arabidopsis thaliana]
gi|332197817|gb|AEE35938.1| uncharacterized protein [Arabidopsis thaliana]
Length = 323
Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/140 (70%), Positives = 118/140 (84%), Gaps = 4/140 (2%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
++ GSP+MEDIEAF T YRA+L EAE+AKSIP+N SLEVSSPGVERVVRIP +L+R+KDR
Sbjct: 188 NKFGSPTMEDIEAFSTIYRAKLAEAELAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDR 247
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
MYV+Y E T E DG+FRL+SFD+E + C WG+AD+R+NREKAGKGRPLSKKQR
Sbjct: 248 PMYVRYTNEDTET----EGDGIFRLVSFDVEAKICIWGIADIRVNREKAGKGRPLSKKQR 303
Query: 151 EWRLNTTFDSLRLVRLHSDC 170
EWRL T F+SLRLVRLHS+C
Sbjct: 304 EWRLETAFESLRLVRLHSEC 323
>gi|297842485|ref|XP_002889124.1| hypothetical protein ARALYDRAFT_476875 [Arabidopsis lyrata subsp.
lyrata]
gi|297334965|gb|EFH65383.1| hypothetical protein ARALYDRAFT_476875 [Arabidopsis lyrata subsp.
lyrata]
Length = 318
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 116/140 (82%), Gaps = 4/140 (2%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
++ GSP+MEDIEA+ T YRA+L EA +AKSIP+N SLEVSSPGVERVVRIP +L+R+KDR
Sbjct: 183 NKFGSPTMEDIEAYSTIYRAKLAEAGLAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDR 242
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
MYV+Y E T E DG+FRLISFD+E + C WG+AD R+NREKAGKGRPLSKKQR
Sbjct: 243 PMYVRYTNEDTET----EGDGIFRLISFDVEAKSCIWGIADTRVNREKAGKGRPLSKKQR 298
Query: 151 EWRLNTTFDSLRLVRLHSDC 170
EWRL T F+SLRLVRLHS+C
Sbjct: 299 EWRLETAFESLRLVRLHSEC 318
>gi|218194896|gb|EEC77323.1| hypothetical protein OsI_15994 [Oryza sativa Indica Group]
Length = 327
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/144 (67%), Positives = 118/144 (81%), Gaps = 8/144 (5%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R GSP+++DIEAF YRA++D+AE A IP+N SLEVSSPGVERV+RIP +LERFK+RA
Sbjct: 187 RYGSPTIDDIEAFTIAYRAKMDDAESAGRIPQNISLEVSSPGVERVIRIPDDLERFKERA 246
Query: 92 MYVKYV-----GETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLS 146
MYV+Y GE +T P E DGVFRLIS+DM+ CTWG+ADV+INR++AGKGRPLS
Sbjct: 247 MYVRYTITSDGGEGMT---PQEGDGVFRLISYDMDLCECTWGIADVKINRQQAGKGRPLS 303
Query: 147 KKQREWRLNTTFDSLRLVRLHSDC 170
KKQREWRL T F+SL+LVR+HSDC
Sbjct: 304 KKQREWRLQTPFESLKLVRVHSDC 327
>gi|116310789|emb|CAH67581.1| H0315A08.11 [Oryza sativa Indica Group]
Length = 326
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/144 (67%), Positives = 118/144 (81%), Gaps = 8/144 (5%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R GSP+++DIEAF YRA++D+AE A IP+N SLEVSSPGVERV+RIP +LERFK+RA
Sbjct: 186 RYGSPTIDDIEAFTIAYRAKMDDAESAGRIPQNISLEVSSPGVERVIRIPDDLERFKERA 245
Query: 92 MYVKYV-----GETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLS 146
MYV+Y GE +T P E DGVFRLIS+DM+ CTWG+ADV+INR++AGKGRPLS
Sbjct: 246 MYVRYTITSDGGEGMT---PQEGDGVFRLISYDMDLCECTWGIADVKINRQQAGKGRPLS 302
Query: 147 KKQREWRLNTTFDSLRLVRLHSDC 170
KKQREWRL T F+SL+LVR+HSDC
Sbjct: 303 KKQREWRLQTPFESLKLVRVHSDC 326
>gi|115458524|ref|NP_001052862.1| Os04g0438300 [Oryza sativa Japonica Group]
gi|38344074|emb|CAE02749.2| OSJNBa0006B20.18 [Oryza sativa Japonica Group]
gi|113564433|dbj|BAF14776.1| Os04g0438300 [Oryza sativa Japonica Group]
gi|215694700|dbj|BAG89891.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222628915|gb|EEE61047.1| hypothetical protein OsJ_14901 [Oryza sativa Japonica Group]
Length = 327
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/144 (67%), Positives = 118/144 (81%), Gaps = 8/144 (5%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R GSP+++DIEAF YRA++D+AE A IP+N SLEVSSPGVERV+RIP +LERFK+RA
Sbjct: 187 RYGSPTIDDIEAFTIAYRAKIDDAESAGRIPQNISLEVSSPGVERVIRIPDDLERFKERA 246
Query: 92 MYVKYV-----GETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLS 146
MYV+Y GE +T P E DGVFRLIS+DM+ CTWG+ADV+INR++AGKGRPLS
Sbjct: 247 MYVRYTITSDGGEGMT---PQEGDGVFRLISYDMDLCECTWGIADVKINRQQAGKGRPLS 303
Query: 147 KKQREWRLNTTFDSLRLVRLHSDC 170
KKQREWRL T F+SL+LVR+HSDC
Sbjct: 304 KKQREWRLQTPFESLKLVRVHSDC 327
>gi|219363185|ref|NP_001136801.1| hypothetical protein [Zea mays]
gi|194697162|gb|ACF82665.1| unknown [Zea mays]
gi|414587132|tpg|DAA37703.1| TPA: hypothetical protein ZEAMMB73_490350 [Zea mays]
Length = 142
Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 114/139 (82%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R GSP+++DIEA+ YRA+LDEAE A IP+N SLEVSSPGVERV+RIP ELERFK+RA
Sbjct: 4 RYGSPTIDDIEAYTIAYRAKLDEAESAGKIPKNISLEVSSPGVERVIRIPEELERFKERA 63
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYV+Y + +P E DGV LIS+DM+ CTWG+ADV+INR+++GKGRPLSKKQRE
Sbjct: 64 MYVRYTTASDEATTPQEGDGVLTLISYDMDLRECTWGIADVKINRQQSGKGRPLSKKQRE 123
Query: 152 WRLNTTFDSLRLVRLHSDC 170
WRL T F+SL+LVRL+S+C
Sbjct: 124 WRLQTPFESLKLVRLYSEC 142
>gi|195649031|gb|ACG43983.1| hypothetical protein [Zea mays]
Length = 319
Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 114/139 (82%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R GSP+++DIEA+ YRA+LDEAE A IP+N SLEVSSPGVERV+RIP ELERFK+RA
Sbjct: 181 RYGSPTIDDIEAYTIAYRAKLDEAESAGKIPKNISLEVSSPGVERVIRIPEELERFKERA 240
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYV+Y + +P E DGV LIS+DM+ CTWG+ADV+INR+++GKGRPLSKKQRE
Sbjct: 241 MYVRYTTASDEATTPQEGDGVLTLISYDMDLRECTWGIADVKINRQQSGKGRPLSKKQRE 300
Query: 152 WRLNTTFDSLRLVRLHSDC 170
WRL T F+SL+LVRL+S+C
Sbjct: 301 WRLQTPFESLKLVRLYSEC 319
>gi|414587129|tpg|DAA37700.1| TPA: hypothetical protein ZEAMMB73_490350 [Zea mays]
Length = 319
Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 114/139 (82%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R GSP+++DIEA+ YRA+LDEAE A IP+N SLEVSSPGVERV+RIP ELERFK+RA
Sbjct: 181 RYGSPTIDDIEAYTIAYRAKLDEAESAGKIPKNISLEVSSPGVERVIRIPEELERFKERA 240
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYV+Y + +P E DGV LIS+DM+ CTWG+ADV+INR+++GKGRPLSKKQRE
Sbjct: 241 MYVRYTTASDEATTPQEGDGVLTLISYDMDLRECTWGIADVKINRQQSGKGRPLSKKQRE 300
Query: 152 WRLNTTFDSLRLVRLHSDC 170
WRL T F+SL+LVRL+S+C
Sbjct: 301 WRLQTPFESLKLVRLYSEC 319
>gi|357163629|ref|XP_003579795.1| PREDICTED: uncharacterized protein LOC100840782 [Brachypodium
distachyon]
Length = 321
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 115/139 (82%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R GSP+++DIEA+ YRA+LD+AE A IP N SLEVSSPGVERV+R+P ELERFK+RA
Sbjct: 183 RYGSPTIDDIEAYTIAYRAKLDDAESAGRIPNNVSLEVSSPGVERVIRVPGELERFKERA 242
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYV+YV + +P E DGVFRLIS+DM+ CTWG+ADV+INR++ GKGRPLSKKQRE
Sbjct: 243 MYVRYVTRSEDEATPQEGDGVFRLISYDMDLCECTWGIADVKINRQQTGKGRPLSKKQRE 302
Query: 152 WRLNTTFDSLRLVRLHSDC 170
WRL T F+SL+LVR++S+C
Sbjct: 303 WRLQTPFESLKLVRVYSEC 321
>gi|242075876|ref|XP_002447874.1| hypothetical protein SORBIDRAFT_06g017270 [Sorghum bicolor]
gi|241939057|gb|EES12202.1| hypothetical protein SORBIDRAFT_06g017270 [Sorghum bicolor]
Length = 327
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/139 (64%), Positives = 113/139 (81%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R GSP+++DIEA+ YRA+LD+AE IP+N SLEVSSPGVERV+RIP ELERFK+RA
Sbjct: 189 RYGSPTIDDIEAYTIAYRAKLDDAESTGKIPKNISLEVSSPGVERVIRIPEELERFKERA 248
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYV+Y + +P E DGV RLIS+DM+ C WG+ADV+INR+++GKGRPLSKKQRE
Sbjct: 249 MYVRYTTTSDEAATPQEGDGVLRLISYDMDLRECIWGIADVKINRQQSGKGRPLSKKQRE 308
Query: 152 WRLNTTFDSLRLVRLHSDC 170
WRL T F+SL+LVRL+S+C
Sbjct: 309 WRLQTPFESLKLVRLYSEC 327
>gi|326495670|dbj|BAJ85931.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 115/139 (82%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R GSP+++DIEA+ YRA+LD+AE A IP+N SLEVSSPGVERV+R+P +LERFK+R+
Sbjct: 197 RYGSPTIDDIEAYTIAYRAKLDDAESAGRIPKNVSLEVSSPGVERVIRVPDDLERFKERS 256
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
MYV+YV + +P E DGVFRLIS+D++ CTWG+ADV+INR++ GKGRPLSKKQ E
Sbjct: 257 MYVRYVITSKDAATPQEGDGVFRLISYDVDLCECTWGIADVKINRQQTGKGRPLSKKQGE 316
Query: 152 WRLNTTFDSLRLVRLHSDC 170
WRL T F+SL+LVR++S+C
Sbjct: 317 WRLQTPFESLKLVRVYSEC 335
>gi|218190735|gb|EEC73162.1| hypothetical protein OsI_07201 [Oryza sativa Indica Group]
Length = 829
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 90/108 (83%), Gaps = 8/108 (7%)
Query: 68 EVSSPGVERVVRIPLELERFKDRAMYVKYV-----GETVTTGSPSESDGVFRLISFDMET 122
EVSSPGVERV+RIP +LERFK+RAMYV+Y GE +T P E DGVFRLIS+DM+
Sbjct: 725 EVSSPGVERVIRIPDDLERFKERAMYVRYTITSDGGEGMT---PQEGDGVFRLISYDMDL 781
Query: 123 ECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC 170
CTWG+ADV+INR++AGKGRPLSKKQREWRL T F+SL+LVR+HSDC
Sbjct: 782 CECTWGIADVKINRQQAGKGRPLSKKQREWRLQTPFESLKLVRVHSDC 829
>gi|168032332|ref|XP_001768673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680172|gb|EDQ66611.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 586
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 103/139 (74%), Gaps = 1/139 (0%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
D+ GSPSM++I+ F +TY LD+A K++P++ +LEVSSPG ERVVRIP +LERFKD
Sbjct: 448 DKYGSPSMDEIQKFSSTYSKALDKAGEEKTVPDDLALEVSSPGAERVVRIPQDLERFKDL 507
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
MYV Y+ + + S + DG+ L SFD+E+ W LA+VR+NR+ AGKGR +++KQR
Sbjct: 508 PMYVSYIETSSDSSSEEK-DGILELESFDVESGSAKWKLANVRLNRDLAGKGRGMNRKQR 566
Query: 151 EWRLNTTFDSLRLVRLHSD 169
+WRL+ +F++ R+VRL+ D
Sbjct: 567 DWRLDLSFENTRMVRLYID 585
>gi|115470641|ref|NP_001058919.1| Os07g0155200 [Oryza sativa Japonica Group]
gi|50509569|dbj|BAD31346.1| unknown protein [Oryza sativa Japonica Group]
gi|113610455|dbj|BAF20833.1| Os07g0155200 [Oryza sativa Japonica Group]
gi|215686454|dbj|BAG87671.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737697|dbj|BAG96827.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199109|gb|EEC81536.1| hypothetical protein OsI_24944 [Oryza sativa Indica Group]
gi|222636456|gb|EEE66588.1| hypothetical protein OsJ_23139 [Oryza sativa Japonica Group]
Length = 301
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 96/141 (68%), Gaps = 2/141 (1%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
+R G P +E+IE+F Y+ +LDE IP + ++EVSSPG ER++++P +L+RFKD
Sbjct: 161 NRYGCPGIEEIESFNKLYKQKLDELIEQGEIPLDLAIEVSSPGAERLLKVPKDLDRFKDM 220
Query: 91 AMYVKYV--GETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 148
AM V+Y+ G+ V + DG+F L S D++ E C W LADV+ NR AGKGRPL++K
Sbjct: 221 AMRVQYLVEGDDVVPKQILQKDGIFLLESVDIQAEHCIWKLADVKENRAAAGKGRPLNRK 280
Query: 149 QREWRLNTTFDSLRLVRLHSD 169
+R+WRL T+F +++ L+ D
Sbjct: 281 KRDWRLQTSFQAVKKATLYLD 301
>gi|326515564|dbj|BAK07028.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 94/138 (68%), Gaps = 3/138 (2%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
R G P +E+IE F Y+ +LDE IP + +LE+SSPG ER++++P +L+RFKD A
Sbjct: 160 RYGCPGIEEIENFNRLYKQKLDEIIERGEIPLDLALEISSPGAERLLKVPGDLDRFKDMA 219
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
M V+Y+ E S + DG+F L S D++TE C W LADV N +AGKGRPL++KQR+
Sbjct: 220 MRVQYLAEGDGLVS-DQVDGIFMLESVDIQTEHCVWKLADV--NENRAGKGRPLNRKQRD 276
Query: 152 WRLNTTFDSLRLVRLHSD 169
WRL T+FD++R L+ D
Sbjct: 277 WRLQTSFDAVRKATLYLD 294
>gi|297738103|emb|CBI27304.3| unnamed protein product [Vitis vinifera]
Length = 310
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 89/138 (64%), Gaps = 2/138 (1%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKD 89
++ G PSME+IE + Y+ +LDE IP N ++EVSSPG ER++++P +L+RFKD
Sbjct: 172 SNKYGCPSMEEIERYNLEYKKKLDEMGALGEIPHNLAIEVSSPGAERLLKVPDDLDRFKD 231
Query: 90 RAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQ 149
M V YV + T E DGVF L S E+ C W LA+VR NR+ GKGRPLS+KQ
Sbjct: 232 MPMRVSYVEDVETQC--LEKDGVFMLESIKTESANCVWKLANVRENRDPLGKGRPLSRKQ 289
Query: 150 REWRLNTTFDSLRLVRLH 167
++WRLN F+ R V L+
Sbjct: 290 KDWRLNLPFEMFRRVTLY 307
>gi|225423440|ref|XP_002273771.1| PREDICTED: uncharacterized protein LOC100259261 [Vitis vinifera]
Length = 223
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 89/137 (64%), Gaps = 2/137 (1%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
++ G PSME+IE + Y+ +LDE IP N ++EVSSPG ER++++P +L+RFKD
Sbjct: 86 NKYGCPSMEEIERYNLEYKKKLDEMGALGEIPHNLAIEVSSPGAERLLKVPDDLDRFKDM 145
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
M V YV + T E DGVF L S E+ C W LA+VR NR+ GKGRPLS+KQ+
Sbjct: 146 PMRVSYVEDVETQC--LEKDGVFMLESIKTESANCVWKLANVRENRDPLGKGRPLSRKQK 203
Query: 151 EWRLNTTFDSLRLVRLH 167
+WRLN F+ R V L+
Sbjct: 204 DWRLNLPFEMFRRVTLY 220
>gi|224112098|ref|XP_002316081.1| predicted protein [Populus trichocarpa]
gi|222865121|gb|EEF02252.1| predicted protein [Populus trichocarpa]
Length = 229
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 91/137 (66%), Gaps = 5/137 (3%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
G PS+E++E++C YR RL+E IP N ++EVS+PG ER++++P +L RFKD M
Sbjct: 98 GCPSIEELESYCQEYRKRLEEVGALGEIPNNLAVEVSTPGAERILKVPEDLSRFKDMPMR 157
Query: 94 VKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR 153
V Y + G+ E++GVF L S +ME+E C W LADV+ NR+ KGRPL++K+R+WR
Sbjct: 158 VCY-----SEGNGPETNGVFFLESVEMESENCVWKLADVKENRDPESKGRPLNRKRRDWR 212
Query: 154 LNTTFDSLRLVRLHSDC 170
L F +V L+ DC
Sbjct: 213 LTLPFKMHGMVSLYLDC 229
>gi|357119389|ref|XP_003561424.1| PREDICTED: uncharacterized protein LOC100842923 [Brachypodium
distachyon]
Length = 290
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 94/139 (67%), Gaps = 3/139 (2%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
+R G P +E+IE F Y+ +LDE IP + ++E+SSPG ER++++P +L+RFKD
Sbjct: 155 NRYGCPGIEEIENFNRIYKQKLDEMIERGEIPLDLAVEISSPGAERLLKVPEDLDRFKDM 214
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
AM V+Y E S ++DG+F L S D++ E C W LA+V NR AGKGRPLS+KQR
Sbjct: 215 AMKVQYFAEGDDLVS-DQADGIFLLESVDIQAEHCVWKLANVTENR--AGKGRPLSRKQR 271
Query: 151 EWRLNTTFDSLRLVRLHSD 169
+WRL T+F S+R V L+ D
Sbjct: 272 DWRLQTSFQSVRKVTLYLD 290
>gi|242047464|ref|XP_002461478.1| hypothetical protein SORBIDRAFT_02g003280 [Sorghum bicolor]
gi|241924855|gb|EER97999.1| hypothetical protein SORBIDRAFT_02g003280 [Sorghum bicolor]
Length = 321
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 94/139 (67%), Gaps = 3/139 (2%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
G P +E+IE F Y+ +LDE I + +LEVSSPG ER++++P +L+RFKD AM
Sbjct: 181 GCPDIEEIENFNRLYKQKLDEIIERGEISLDLALEVSSPGAERLLKVPEDLDRFKDMAMR 240
Query: 94 VKYVGE---TVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
V+Y+ E + + DG+F L S D+++E C W LADV+ NR +AGKGRPL++KQR
Sbjct: 241 VQYLAEGDNDLMSKQNLLKDGIFLLQSVDIQSEHCVWKLADVKENRAEAGKGRPLNRKQR 300
Query: 151 EWRLNTTFDSLRLVRLHSD 169
+WRL T+F +++ V L+ D
Sbjct: 301 DWRLQTSFTAVKKVTLYLD 319
>gi|147774154|emb|CAN72408.1| hypothetical protein VITISV_038204 [Vitis vinifera]
Length = 1721
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 86/132 (65%), Gaps = 2/132 (1%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
++ G PSME+IE + Y+ +LDE IP N ++EVSSPG ER++++P +L+RFKD
Sbjct: 1471 NKYGCPSMEEIERYNLEYKKKLDEMGALGEIPHNLAIEVSSPGAERLLKVPDDLDRFKDM 1530
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
M V YV + T E DGVF L S E+ C W LA+VR NR+ GKGRPLS+KQ+
Sbjct: 1531 PMRVSYVEDVETQC--LEKDGVFMLESIKTESANCVWKLANVRENRDPLGKGRPLSRKQK 1588
Query: 151 EWRLNTTFDSLR 162
+WRLN F+ R
Sbjct: 1589 DWRLNLPFEMFR 1600
>gi|226508874|ref|NP_001144098.1| uncharacterized protein LOC100276934 [Zea mays]
gi|195636892|gb|ACG37914.1| hypothetical protein [Zea mays]
Length = 164
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 3/143 (2%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
D G P +E+IE F Y+ +LDE I + +LEVSSPG ER++++P +L+RFKD
Sbjct: 21 DVYGCPDIEEIEKFNRLYKQKLDEIVERGEISLDLALEVSSPGAERLLKVPEDLDRFKDM 80
Query: 91 AMYVKYVGETVTTGSPSES---DGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSK 147
AM V+Y+ E + + +S DG+F L S + E C W LADV+ NR +AGKGRPL++
Sbjct: 81 AMRVQYLAEGNSDLASKQSLLKDGIFLLESVNAEAGHCVWRLADVKENRAEAGKGRPLNR 140
Query: 148 KQREWRLNTTFDSLRLVRLHSDC 170
KQR+WRL T F +++ V L+ D
Sbjct: 141 KQRDWRLQTCFTAVKKVTLYLDA 163
>gi|356499905|ref|XP_003518776.1| PREDICTED: uncharacterized protein LOC100806065 [Glycine max]
Length = 279
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 89/134 (66%), Gaps = 2/134 (1%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
G PSME++E + Y+ RLDE IP++ +LEVSSPG ER++++P ++ RFKD M
Sbjct: 146 GCPSMEELECYNQKYKTRLDEVGALGEIPDDLALEVSSPGAERLLKVPDDISRFKDLPMR 205
Query: 94 VKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR 153
V Y E + + P E DGVF L S + ++E C W LADV+ NR+ KGRPLS+KQ++WR
Sbjct: 206 VCYT-ENIESNCP-EKDGVFLLDSIENDSEMCVWKLADVKENRDPLKKGRPLSRKQKDWR 263
Query: 154 LNTTFDSLRLVRLH 167
L F+ R+V L+
Sbjct: 264 LQLPFNLHRMVTLY 277
>gi|414592053|tpg|DAA42624.1| TPA: hypothetical protein ZEAMMB73_835486 [Zea mays]
Length = 321
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 3/143 (2%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
D G P +E+IE F Y+ +LDE I + +LEVSSPG ER++++P +L+RFKD
Sbjct: 178 DVYGCPDIEEIEKFNRLYKQKLDEIVERGEISLDLALEVSSPGAERLLKVPEDLDRFKDM 237
Query: 91 AMYVKYVGETVTTGSPSES---DGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSK 147
AM V+Y+ E + + +S DG+F L S + E C W LADV+ NR +AGKGRPL++
Sbjct: 238 AMRVQYLAEGNSDLASKQSLLKDGIFLLESVNAEAGHCVWRLADVKENRAEAGKGRPLNR 297
Query: 148 KQREWRLNTTFDSLRLVRLHSDC 170
KQR+WRL T F +++ V L+ D
Sbjct: 298 KQRDWRLQTCFTAVKKVTLYLDA 320
>gi|449434720|ref|XP_004135144.1| PREDICTED: uncharacterized protein LOC101211568 [Cucumis sativus]
Length = 315
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
G P++E+++++ Y+ RLDE +IP++ +LEVSSPG ER+++IP +L RFK M
Sbjct: 181 GCPNLEELDSYSKEYKKRLDETGALGNIPDDLALEVSSPGAERLLKIPDDLLRFKATPMR 240
Query: 94 VKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR 153
V Y+ + + GS E+DGVF L ++E+E C W LA+VR NR+ KGRPL++KQ+EWR
Sbjct: 241 VSYIEDVDSRGS--ENDGVFMLDHLELESESCIWKLANVRENRDPLSKGRPLTRKQKEWR 298
Query: 154 LNTTFDSLRLVRLHSDC 170
L + + + V L+ C
Sbjct: 299 LKLPYANHKKVFLYLKC 315
>gi|449478348|ref|XP_004155292.1| PREDICTED: uncharacterized protein LOC101225208 [Cucumis sativus]
Length = 315
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
G P++E+++++ Y+ RLDE +IP++ +LEVSSPG ER++++P +L RFK M
Sbjct: 181 GCPNLEELDSYSKEYKKRLDETGALGNIPDDLALEVSSPGAERLLKVPDDLLRFKATPMR 240
Query: 94 VKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR 153
V Y+ + + GS E+DGVF L ++E+E C W LA+VR NR+ KGRPL++KQ+EWR
Sbjct: 241 VSYIEDVDSRGS--ENDGVFMLDHLELESESCIWKLANVRENRDPLSKGRPLTRKQKEWR 298
Query: 154 LNTTFDSLRLVRLHSDC 170
L + + + V L+ C
Sbjct: 299 LKLPYANHKKVFLYLKC 315
>gi|18409217|ref|NP_564954.1| uncharacterized protein [Arabidopsis thaliana]
gi|13937141|gb|AAK50064.1|AF372924_1 At1g69210/F4N2_11 [Arabidopsis thaliana]
gi|22137004|gb|AAM91347.1| At1g69210/F4N2_11 [Arabidopsis thaliana]
gi|332196773|gb|AEE34894.1| uncharacterized protein [Arabidopsis thaliana]
Length = 305
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
G P+M+++E F ++ RLD+A K IPE+ +LEVSSPG ER++R+P +L RFKD M
Sbjct: 172 GCPTMDELEEFSREFKKRLDDAGAEKVIPEDLALEVSSPGAERLLRVPEDLPRFKDMPMT 231
Query: 94 VKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR 153
V YV E T + GVF L S D E++ C W LADVR NR+ KGRPLS+KQ++ R
Sbjct: 232 VSYVEE--TNSRKAVKSGVFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQKDLR 289
Query: 154 LNTTFDSLRLVRLHSD 169
+ F + + L+ D
Sbjct: 290 ITLPFADHKKINLYLD 305
>gi|357487659|ref|XP_003614117.1| Ribosome maturation factor rimP [Medicago truncatula]
gi|355515452|gb|AES97075.1| Ribosome maturation factor rimP [Medicago truncatula]
Length = 282
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 92/138 (66%), Gaps = 2/138 (1%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
+ G PSME+++++ ++ RLDE IP++ LEVSSPG++R++++P +L RFK+
Sbjct: 147 KYGCPSMEELDSYNQEFKKRLDEVGALGEIPDDLGLEVSSPGLDRILKVPDDLNRFKEMP 206
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
M V Y E + + E DGVF L S ++++E C W LADV+ NR+ KG+PL++KQ++
Sbjct: 207 MRVCY-AENIESNC-REVDGVFLLDSIEIDSEVCVWKLADVKENRDATIKGKPLNRKQKD 264
Query: 152 WRLNTTFDSLRLVRLHSD 169
WRL F+ R+V ++ D
Sbjct: 265 WRLRLPFNLHRMVTMYID 282
>gi|388510886|gb|AFK43509.1| unknown [Medicago truncatula]
Length = 282
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 90/138 (65%), Gaps = 2/138 (1%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
+ G PSME+++++ ++ RLDE IP++ LEVSSPG++R++++P +L RFK+
Sbjct: 147 KYGCPSMEELDSYNQEFKKRLDEVGALGEIPDDLGLEVSSPGLDRILKVPDDLNRFKEMP 206
Query: 92 MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
M V Y E + + E GVF L S ++++E C W LADV+ NR+ KG+PL++KQ++
Sbjct: 207 MRVCY-AENIESNC-REVGGVFLLDSIEIDSEVCVWKLADVKENRDATIKGKPLNRKQKD 264
Query: 152 WRLNTTFDSLRLVRLHSD 169
WRL F+ R+V + D
Sbjct: 265 WRLRLPFNLHRMVTMCID 282
>gi|6730645|gb|AAF27066.1|AC008262_15 F4N2.17 [Arabidopsis thaliana]
Length = 1120
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 11/145 (7%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVS---SP------GVERVVRIPLEL 84
G P+M+++E F ++ RLD+A K IPE+ +LEV SP G ER++R+P +L
Sbjct: 978 GCPTMDELEEFSREFKKRLDDAGAEKVIPEDLALEVKKSLSPVNQLSLGAERLLRVPEDL 1037
Query: 85 ERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRP 144
RFKD M V YV ET + GVF L S D E++ C W LADVR NR+ KGRP
Sbjct: 1038 PRFKDMPMTVSYVEET--NSRKAVKSGVFLLESIDAESDNCVWKLADVRENRDPESKGRP 1095
Query: 145 LSKKQREWRLNTTFDSLRLVRLHSD 169
LS+KQ++ R+ F + + L+ D
Sbjct: 1096 LSRKQKDLRITLPFADHKKINLYLD 1120
>gi|414881579|tpg|DAA58710.1| TPA: putative MYB DNA-binding domain superfamily protein [Zea mays]
Length = 677
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 58/77 (75%)
Query: 94 VKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR 153
V+Y + +P E DGV LI +DM+ CTWG+ DV+INR+++ KG+PLSKKQREWR
Sbjct: 601 VRYTTTSDEATTPQEGDGVLTLIYYDMDLRECTWGIVDVKINRQQSSKGKPLSKKQREWR 660
Query: 154 LNTTFDSLRLVRLHSDC 170
L T F+SL+LVRL+S+C
Sbjct: 661 LQTAFESLKLVRLYSEC 677
>gi|297841651|ref|XP_002888707.1| hypothetical protein ARALYDRAFT_315930 [Arabidopsis lyrata subsp.
lyrata]
gi|297334548|gb|EFH64966.1| hypothetical protein ARALYDRAFT_315930 [Arabidopsis lyrata subsp.
lyrata]
Length = 1151
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 84/165 (50%), Gaps = 31/165 (18%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEV------------------------ 69
G P+M+ +E F ++ RLD+A K IPE+ +LEV
Sbjct: 989 GCPTMDKLEEFSREFKKRLDDAGAEKVIPEDLALEVKRVFLHESTTTQGQFVLNLVSVLF 1048
Query: 70 -----SSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETEC 124
SSPG ER++R+P +L RFK+ M V YV +T VF L S D E++
Sbjct: 1049 FSVKVSSPGAERLLRVPEDLPRFKEMPMTVSYVEKT--NSRKVVKTAVFLLESIDAESDN 1106
Query: 125 CTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD 169
C W LADV+ NR+ KGRPLS+KQ++ R+ F + + L+ D
Sbjct: 1107 CVWKLADVKENRDPESKGRPLSRKQKDLRITLPFTDHKKINLYLD 1151
>gi|255078408|ref|XP_002502784.1| predicted protein [Micromonas sp. RCC299]
gi|226518050|gb|ACO64042.1| predicted protein [Micromonas sp. RCC299]
Length = 298
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Query: 22 LWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIP 81
++++ D+ GSP+++ + A TY L+E K P++ +LEV+SPG ER +R+P
Sbjct: 155 IYISIDAVNDKFGSPTLDQLGAVSRTYNTVLEE----KGFPDDVALEVASPGAERQLRLP 210
Query: 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGK 141
LELERF+D M V Y G+ V + D E T+ LADV NR +A K
Sbjct: 211 LELERFRDLTMKVTYAARAEEDGAEGTRTKVLDVEDID-EDGSPTFKLADVEENRPQAKK 269
Query: 142 GRPLSKKQREWRLNTTFDSLRLVRLH 167
G+ ++KKQR+WRL + L+
Sbjct: 270 GQGMNKKQRDWRLKLDVGDISKANLY 295
>gi|384245395|gb|EIE18889.1| hypothetical protein COCSUDRAFT_45036 [Coccomyxa subellipsoidea
C-169]
Length = 294
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
D GSP+++D+ F + + LD A + + S+EVSSPG ER+VR+P ELERF
Sbjct: 161 DLYGSPTLDDVALFSSKFSQALD-ARLGEEAAGKLSVEVSSPGAERIVRVPRELERFGSL 219
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
M V Y+ E GS V L D + WGLADV+ NR K LSK++
Sbjct: 220 PMQVTYLKE---PGSTETDTKVLSLKELDEQQGTSRWGLADVKANRRKGVMK--LSKREA 274
Query: 151 EWRLNTTFDSLRLVRLH 167
+ SL+L++LH
Sbjct: 275 GISFDLPISSLQLIKLH 291
>gi|145352954|ref|XP_001420798.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581033|gb|ABO99091.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 189
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
D+ GSP+++++ + A LDE + PE+ ++E++SPG R +R+P ELERF+D
Sbjct: 57 DKYGSPTLDELTTIVRAHNAILDE----RGFPEDVAVELASPGAMRSLRVPRELERFRDL 112
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISF-DMETECCTWGLADVRINREKAGKGRPLSKKQ 149
M V Y E + +P + V + + D+ W LADV NR A KG+ ++KK
Sbjct: 113 VMDVTY-KEAIE--NPESTSNVTKTMEVTDISDTEVEWKLADVPANR-PAKKGQGMNKKS 168
Query: 150 REWRLNTTFDSLRLVRLHSDC 170
REWRL D++ L D
Sbjct: 169 REWRLRMPLDAVVRANLFIDI 189
>gi|302830199|ref|XP_002946666.1| hypothetical protein VOLCADRAFT_116086 [Volvox carteri f.
nagariensis]
gi|300268412|gb|EFJ52593.1| hypothetical protein VOLCADRAFT_116086 [Volvox carteri f.
nagariensis]
Length = 438
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
D GSPS++DIE F A L E E+ S EVSSPG ER+VR+P EL RF +
Sbjct: 297 DLYGSPSIDDIERFQRGLLAAL-EREMGPEAAGEISFEVSSPGAERLVRVPEELPRFAEL 355
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQ 149
+ V+Y T E V L D +W LA+VR N KGR LSKKQ
Sbjct: 356 PLQVEY-----RTPDGKEVSAVLLLAGLDPSGSTSSWRLANVRAN--ATVKGRALSKKQ 407
>gi|303283206|ref|XP_003060894.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457245|gb|EEH54544.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 332
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
D+ GSP+++ + + A L+E ++ PE+ +LEV+SPG ER +R+P +L RF++
Sbjct: 199 DKFGSPTLDQLGEVSRKFNALLEE----ENFPEDVALEVASPGAERALRLPDDLPRFRNL 254
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
M V Y G+ + D++ + + LADV NR +A KG+ ++KKQR
Sbjct: 255 TMKVTYAAAAEDDGAEGTR--TRVMDVVDVDGDAVEFKLADVPENRPQAKKGQGMNKKQR 312
Query: 151 EWRL 154
EWRL
Sbjct: 313 EWRL 316
>gi|424513387|emb|CCO66009.1| predicted protein [Bathycoccus prasinos]
Length = 387
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
D+ GSP+++D+ A +L+E +K P++ ++EV+SPG ER + IP +L RF++
Sbjct: 253 DQYGSPNLDDLIAVSR----KLNELAESKGFPDDVAIEVASPGAERKLTIPEDLLRFREL 308
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLS 146
M V Y + +P + + F+ E+ + LADV+ NR KG P+S
Sbjct: 309 KMKVIYNDD--ENDNPENETMILNVEDFEEESGLVVFRLADVQENR-PPKKGMPMS 361
>gi|159474558|ref|XP_001695392.1| predicted protein [Chlamydomonas reinhardtii]
gi|158275875|gb|EDP01650.1| predicted protein [Chlamydomonas reinhardtii]
Length = 253
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 66 SLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECC 125
S EVSSPG ER+VR+P EL RF+ + V+Y T ++ V L D
Sbjct: 156 SFEVSSPGAERLVRVPDELRRFETLPLKVEY-----RTPEGKDASAVLLLAELDEAAGTS 210
Query: 126 TWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD 169
W LA+ R N KGR LSK+Q L + VR+H D
Sbjct: 211 AWRLANCRAN--ATVKGRALSKRQLSQVLALPLADIIRVRIHVD 252
>gi|392404158|ref|YP_006440770.1| Ribosome maturation factor rimP [Turneriella parva DSM 21527]
gi|390612112|gb|AFM13264.1| Ribosome maturation factor rimP [Turneriella parva DSM 21527]
Length = 176
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
D GS ++ D E + R LDE E A I N SLEV+S G ER ++ E++RF
Sbjct: 48 DPHGSVNIRDCETYARALRDALDEMEKASGINLNYSLEVASAGAERELKSLAEVKRFSAL 107
Query: 91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREK--AGKGRPLSKK 148
+ V +V ET T S L + +E E T+ +AD + NR+K K + L
Sbjct: 108 PVNVTFVAETGKTLSEI-------LKTEQIEGEYVTFNVADCKANRKKYTPKKLKSLPTH 160
Query: 149 QREWRLNTTFDSLRLVRLHSD 169
+ W ++ +RLH D
Sbjct: 161 RVAWH------DIKKIRLHLD 175
>gi|374587727|ref|ZP_09660819.1| Ribosome maturation factor rimP [Leptonema illini DSM 21528]
gi|373876588|gb|EHQ08582.1| Ribosome maturation factor rimP [Leptonema illini DSM 21528]
Length = 172
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIP-----ENTSLEVSSPGVERVVRIPLELE 85
D SGS S+++ E F + LD+A + +P EN SLEVSS G ER +RIP E E
Sbjct: 43 DPSGSVSLDECERFSKAFIELLDQAIGQEGLPDDLDAENYSLEVSSAGAERELRIPAEFE 102
Query: 86 RFKDRAMYVKY 96
RF+ R + ++Y
Sbjct: 103 RFRGRPLKIRY 113
>gi|218188575|gb|EEC71002.1| hypothetical protein OsI_02674 [Oryza sativa Indica Group]
Length = 106
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 66 SLEVSSPGVERVVRIPLELERFKDRAMYVKYV--GETVTTGSPSESDGVFRLISFDMETE 123
+L VSSPG ER++ +P +L+RFKD A+ V+Y+ G+ + +G+F L S D++ E
Sbjct: 12 NLLVSSPGAERLLEVPEDLDRFKDMAIRVQYLVEGDDLVLKQILRKNGIFLLKSVDIQAE 71
Query: 124 CCT 126
C
Sbjct: 72 HCI 74
>gi|20521302|dbj|BAB91816.1| hypothetical protein [Oryza sativa Japonica Group]
gi|20804622|dbj|BAB92312.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 165
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 66 SLEVSSPGVERVVRIPLELERFKDRAMYVKYV--GETVTTGSPSESDGVFRLISFDMETE 123
S VSSPG ER++ +P +L+RFKD A+ V+Y+ G+ + +G+F L S D++ E
Sbjct: 71 SQAVSSPGAERLLEVPEDLDRFKDMAIRVQYLVEGDDLVLKQILRKNGIFLLKSVDIQAE 130
Query: 124 CC 125
C
Sbjct: 131 HC 132
>gi|260881110|ref|ZP_05403661.2| hypothetical protein MITSMUL_03619 [Mitsuokella multacida DSM
20544]
gi|260849563|gb|EEX69570.1| hypothetical protein MITSMUL_03619 [Mitsuokella multacida DSM
20544]
Length = 211
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +ED +A LD+ ++ +P++ LEVSSPG++RV+R P + R
Sbjct: 102 VYIDKEGGIDIEDCQALSEKLEEALDKGDV---VPDSYILEVSSPGIDRVLRKPRDFTRE 158
Query: 88 K----DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN 135
+ D +Y G+ + G + DG I D ET+ +A VR++
Sbjct: 159 QGKKVDVTLYAPREGKKLVVGELTGFDG--DAIELDGETKIPLADIAQVRLH 208
>gi|401564640|ref|ZP_10805518.1| hypothetical protein HMPREF1148_1640 [Selenomonas sp. FOBRC6]
gi|400188637|gb|EJO22788.1| hypothetical protein HMPREF1148_1640 [Selenomonas sp. FOBRC6]
Length = 149
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D +A A LD + IP++ LEVSSPG++RV+R P + ER
Sbjct: 40 VYIDKEGGIDIDDCQALSERLEAILDREDF---IPDSYILEVSSPGIDRVLRKPRDFERE 96
Query: 88 K----DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN 135
+ D +Y + G+ TG+ + DG ++++ D + ++ +R++
Sbjct: 97 RGKQVDVTLYAPFDGKKQWTGALMDCDG--KMLTLDDGVQIPMEQVSQIRLH 146
>gi|317133696|ref|YP_004093010.1| hypothetical protein Ethha_2787 [Ethanoligenens harbinense YUAN-3]
gi|315471675|gb|ADU28279.1| protein of unknown function DUF150 [Ethanoligenens harbinense
YUAN-3]
Length = 165
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G +ED EAF LDEA++ IP+ LEVSSPG+ER ++ + F
Sbjct: 42 IYIDKDGGVGIEDCEAFSRAIDGPLDEADL---IPQQYYLEVSSPGIERELKRDAHFQAF 98
Query: 88 KDRAMYVKYV 97
+ ++V+ +
Sbjct: 99 IGKKVHVRLI 108
>gi|333979928|ref|YP_004517873.1| Ribosome maturation factor rimP [Desulfotomaculum kuznetsovii DSM
6115]
gi|333823409|gb|AEG16072.1| Ribosome maturation factor rimP [Desulfotomaculum kuznetsovii DSM
6115]
Length = 155
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G +++D +A + LDEA+ IP + LEVSSPG+ER ++ P + ERF
Sbjct: 41 IFIDKPGGVTLDDCQAVSESLDPLLDEAD---PIPHSYHLEVSSPGIERPLKKPADFERF 97
>gi|86157526|ref|YP_464311.1| hypothetical protein Adeh_1099 [Anaeromyxobacter dehalogenans
2CP-C]
gi|123499926|sp|Q2IPZ0.1|RIMP_ANADE RecName: Full=Ribosome maturation factor RimP
gi|85774037|gb|ABC80874.1| hypothetical protein Adeh_1099 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 171
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D++G ++D +A T LD +A I LEVSSPG++R +R P + +R+
Sbjct: 44 VFIDKAGGVGIDDCQAVSKTVEPILD---VADFIEPAYDLEVSSPGLDRPLRKPRDFDRY 100
Query: 88 KDRAMYVKYVGETVTT--GSPS 107
+ ++VK G T GSP+
Sbjct: 101 AGQRVHVKAYGPVAGTAPGSPA 122
>gi|422344878|ref|ZP_16425802.1| hypothetical protein HMPREF9432_01862 [Selenomonas noxia F0398]
gi|355376332|gb|EHG23586.1| hypothetical protein HMPREF9432_01862 [Selenomonas noxia F0398]
Length = 149
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G +ED +A LD + +P+ LEVSSPG++RV+R P + ER
Sbjct: 40 IYIDKEGGIDIEDCQALSERLEEMLDREDF---VPDAYILEVSSPGLDRVLRKPRDFERE 96
Query: 88 KDRA----MYVKYVGETVTTGSPSESDG 111
+ +A +Y + G+ TG+ + DG
Sbjct: 97 QGKAVDVTLYAPFEGKKQWTGTLAGYDG 124
>gi|383754447|ref|YP_005433350.1| hypothetical protein SELR_16190 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366499|dbj|BAL83327.1| hypothetical protein SELR_16190 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 151
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +ED + LDE +I IP+ LEVSSPG++RV+R P +L R
Sbjct: 42 VYIDKEGGIDIEDCQELSEKLEVILDEQDI---IPDAYILEVSSPGIDRVLRKPRDLVRE 98
Query: 88 KDRA----MYVKYVGETVTTGSPSESDG 111
+ +A +Y G+ TG + DG
Sbjct: 99 QGKAVDVTLYAPLDGKKNLTGVLTAFDG 126
>gi|197121570|ref|YP_002133521.1| hypothetical protein AnaeK_1159 [Anaeromyxobacter sp. K]
gi|259585696|sp|B4UHF7.1|RIMP_ANASK RecName: Full=Ribosome maturation factor RimP
gi|196171419|gb|ACG72392.1| protein of unknown function DUF150 [Anaeromyxobacter sp. K]
Length = 171
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D++G ++D +A T LD A++ I LEVSSPG++R +R P + +R+
Sbjct: 44 VFIDKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPRDFDRY 100
Query: 88 KDRAMYVKYVGETVTT--GSPS 107
+ ++VK G T G+P+
Sbjct: 101 AGQRVHVKAYGPVAGTAPGAPA 122
>gi|220916333|ref|YP_002491637.1| hypothetical protein A2cp1_1227 [Anaeromyxobacter dehalogenans
2CP-1]
gi|259585694|sp|B8JFY3.1|RIMP_ANAD2 RecName: Full=Ribosome maturation factor RimP
gi|219954187|gb|ACL64571.1| protein of unknown function DUF150 [Anaeromyxobacter dehalogenans
2CP-1]
Length = 171
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D++G ++D +A T LD A++ I LEVSSPG++R +R P + +R+
Sbjct: 44 VFIDKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPGDFDRY 100
Query: 88 KDRAMYVKYVGETVTT--GSPS 107
+ ++VK G T G+P+
Sbjct: 101 AGQRVHVKAYGPVAGTAPGAPA 122
>gi|292669519|ref|ZP_06602945.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292648842|gb|EFF66814.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 163
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G +ED + LD + IP+ LEVSSPG++RV+R P + ER
Sbjct: 54 IYIDKEGGIDIEDCQGLSERLEEMLDREDF---IPDAYILEVSSPGLDRVLRKPRDFERE 110
Query: 88 KDRA----MYVKYVGETVTTGSPSESDG 111
+ +A +Y + G+ TG+ + DG
Sbjct: 111 QGKAVDVTLYAPFEGKKQWTGTLAGYDG 138
>gi|335040867|ref|ZP_08533988.1| Ribosome maturation factor rimP [Caldalkalibacillus thermarum
TA2.A1]
gi|334179302|gb|EGL81946.1| Ribosome maturation factor rimP [Caldalkalibacillus thermarum
TA2.A1]
Length = 156
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +ED A + A+LDE + I + LEVSSPG ER ++ ++ R
Sbjct: 40 VYIDKPGGVDIEDCSAVSESLSAKLDEVD---PIDQAYFLEVSSPGAERPLKNEEDIRRA 96
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 121
+ +Y VTT P E F RLI FD E
Sbjct: 97 VGKFIY-------VTTYEPVEGQKAFEGRLIQFDGE 125
>gi|303256974|ref|ZP_07342988.1| DUF150-containing protein [Burkholderiales bacterium 1_1_47]
gi|330999162|ref|ZP_08322881.1| hypothetical protein HMPREF9439_00503 [Parasutterella
excrementihominis YIT 11859]
gi|302860465|gb|EFL83542.1| DUF150-containing protein [Burkholderiales bacterium 1_1_47]
gi|329575362|gb|EGG56906.1| hypothetical protein HMPREF9439_00503 [Parasutterella
excrementihominis YIT 11859]
Length = 186
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 19 KMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV 78
K+P L + V D+ G +++D C +L+ A +++ + LEVSSPGV+R +
Sbjct: 27 KLPRGLIR-VTIDKDGGITLDD----CEKVSNQLNNAMTVENV-DYDRLEVSSPGVDRPL 80
Query: 79 RIPLELERFKDRAMYVKYVGETVTTGSPSES----DGVFRLISFDMETECCTWGLADVRI 134
+ P + +F + ++V+ G P DG + D T L++ R+
Sbjct: 81 KRPRDFVKFVGQNVHVELFAPITGEGLPENGRRRLDGTLDAVEGDENNPSITMTLSENRV 140
Query: 135 NREKAGKGRPLSKKQR 150
R A K R K +
Sbjct: 141 ARTPAEKQRAAKTKAK 156
>gi|260893512|ref|YP_003239609.1| hypothetical protein Adeg_1666 [Ammonifex degensii KC4]
gi|260865653|gb|ACX52759.1| protein of unknown function DUF150 [Ammonifex degensii KC4]
Length = 161
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ +++D EA LD + IP + SLEVSSPGVER ++ P +RF
Sbjct: 42 VFIDKPSGVTLDDCEALSEALGEALD---VEDPIPHSYSLEVSSPGVERPLKKPAHFQRF 98
Query: 88 KDRAMYV 94
R + V
Sbjct: 99 VGREVRV 105
>gi|334128536|ref|ZP_08502424.1| protein of hypothetical function DUF150 [Centipeda periodontii DSM
2778]
gi|333387213|gb|EGK58416.1| protein of hypothetical function DUF150 [Centipeda periodontii DSM
2778]
Length = 180
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELER 86
V D++G ++D C RL+E + IP+ LEVSSPG++RV+R P + ER
Sbjct: 71 VYIDKAGGIDIDD----CQNLSERLEEILDREDFIPDAYILEVSSPGLDRVLRKPRDFER 126
Query: 87 FK----DRAMYVKYVGETVTTGSPSESDG 111
D +Y + G+ TG+ + DG
Sbjct: 127 EHGKQVDVTLYAPFDGKKQWTGALAGCDG 155
>gi|334340460|ref|YP_004545440.1| hypothetical protein [Desulfotomaculum ruminis DSM 2154]
gi|334091814|gb|AEG60154.1| protein of unknown function DUF150 [Desulfotomaculum ruminis DSM
2154]
Length = 153
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G ++D + LDE + IP+ LEVSSPG+ER ++ P + ERF
Sbjct: 41 IYIDKLGGVDLDDCQMVSEKIDTLLDELD---PIPQAYFLEVSSPGIERPLKKPADFERF 97
Query: 88 KDRAMYV 94
K + V
Sbjct: 98 KGHLIMV 104
>gi|405983621|ref|ZP_11041926.1| hypothetical protein HMPREF9451_01029 [Slackia piriformis YIT
12062]
gi|404388436|gb|EJZ83518.1| hypothetical protein HMPREF9451_01029 [Slackia piriformis YIT
12062]
Length = 157
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D + EDI A +DE + P +LEVSSPG++R +R P +RF
Sbjct: 40 VYLDTPEGIAFEDITAAQVWVNEIMDEID---PFPGAYTLEVSSPGIDRPLRTPEHFDRF 96
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGL 129
+Y VTT SP + F RL+ FD + L
Sbjct: 97 AGEEVY-------VTTASPIDGRSRFNARLVGFDFGSNAVKLEL 133
>gi|320354997|ref|YP_004196336.1| hypothetical protein Despr_2912 [Desulfobulbus propionicus DSM
2032]
gi|320123499|gb|ADW19045.1| protein of unknown function DUF150 [Desulfobulbus propionicus DSM
2032]
Length = 153
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKD 89
D+ G +++D A L E+ I LEVSSPG+ER +R + RF D
Sbjct: 45 IDKEGGITIDDCADVSREISAYL---EVEDLIDHAYHLEVSSPGLERPLRKKEDFHRFID 101
Query: 90 RAMYVKY---VGET-VTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGR 143
R + VK +GE V TG+ +G L++ D ET VRI+ E K R
Sbjct: 102 RLIRVKLREPLGEQKVLTGTLLGMEGDTVLLALDSET---------VRIDWENISKAR 150
>gi|373455627|ref|ZP_09547456.1| hypothetical protein HMPREF9453_01625 [Dialister succinatiphilus
YIT 11850]
gi|371934720|gb|EHO62500.1| hypothetical protein HMPREF9453_01625 [Dialister succinatiphilus
YIT 11850]
Length = 156
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ + + D+ G + D + LDEA++ IP+N LEVSSPG++RV++
Sbjct: 36 WILR-IYIDKEGGVDLNDCQTVSEKAGMLLDEADL---IPDNYMLEVSSPGLDRVLK--- 88
Query: 83 ELERFKDRAMYVKYVGETV 101
KD+ +++Y GE V
Sbjct: 89 -----KDKD-FIRYTGEDV 101
>gi|427392500|ref|ZP_18886505.1| hypothetical protein HMPREF9698_00311 [Alloiococcus otitis ATCC
51267]
gi|425731461|gb|EKU94279.1| hypothetical protein HMPREF9698_00311 [Alloiococcus otitis ATCC
51267]
Length = 156
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D++G S++D F LD+ E IP+ LEVSSPG ER ++ +L++
Sbjct: 38 VYIDQAGGVSLDDCTQFSEQLSGLLDQQE-TNFIPQAYYLEVSSPGAERPLKTAEDLKQA 96
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGL----ADVRINREKAGKGR 143
++VK + E + + E L D +T T + DV INR+ K R
Sbjct: 97 VGSYIHVK-LYEMIGPDNAFEG----HLKEVDQDTITLTVKVKTRKKDVVINRDNISKAR 151
>gi|338533264|ref|YP_004666598.1| ribosome maturation factor rimP [Myxococcus fulvus HW-1]
gi|337259360|gb|AEI65520.1| Ribosome maturation factor rimP [Myxococcus fulvus HW-1]
Length = 161
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIP 81
W+ +L G +++ CT +D + ++ IP SLEVSSPGV+R +R P
Sbjct: 41 WVLRLFIDKPGGRVGLDE----CTQVSRAVDPSLDVEDFIPHEYSLEVSSPGVDRPLRKP 96
Query: 82 LELERFKDRAMYVKYVG 98
ER K + + VK G
Sbjct: 97 AHFERVKGQKVKVKTFG 113
>gi|153004005|ref|YP_001378330.1| hypothetical protein Anae109_1138 [Anaeromyxobacter sp. Fw109-5]
gi|259585695|sp|A7H9F0.1|RIMP_ANADF RecName: Full=Ribosome maturation factor RimP
gi|152027578|gb|ABS25346.1| protein of unknown function DUF150 [Anaeromyxobacter sp. Fw109-5]
Length = 171
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W +L D+ G +ED +A LD + I LEVSSPG++R +R P
Sbjct: 40 WTLRLF-VDKPGGVGIEDCQAVSRLVDPILD---VEDFIEPAYDLEVSSPGLDRPLRKPA 95
Query: 83 ELERFKDRAMYVKYVGETVTT--GSPSESDGVFRLISF 118
+ +R+ + +VK G T GSP+ + L+ +
Sbjct: 96 DFDRYAGQRAHVKAYGPVAGTAPGSPARKNWTGVLVGY 133
>gi|348026642|ref|YP_004766447.1| ribosome maturation factor rimP [Megasphaera elsdenii DSM 20460]
gi|341822696|emb|CCC73620.1| ribosome maturation factor rimP [Megasphaera elsdenii DSM 20460]
Length = 153
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +ED +A LDE + I +N LEVSSPG++R+++
Sbjct: 40 VFIDKEGGVDLEDCQAVSEKLSKVLDEKD---PISDNYLLEVSSPGLDRILK-------- 88
Query: 88 KDRAMYVKYVGETVTTGSPSESDGV 112
KD+ +V+Y G +V DGV
Sbjct: 89 KDKD-FVRYAGRSVDIHFFKAHDGV 112
>gi|429735743|ref|ZP_19269674.1| hypothetical protein HMPREF9163_00518 [Selenomonas sp. oral taxon
138 str. F0429]
gi|429157091|gb|EKX99698.1| hypothetical protein HMPREF9163_00518 [Selenomonas sp. oral taxon
138 str. F0429]
Length = 163
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 61 IPENTSLEVSSPGVERVVRIPLELERFK----DRAMYVKYVGETVTTGSPSESDGVFRLI 116
IP+ LEVSSPG++RV+R P + ER + D +Y + G+ TG+ ++ DG +++
Sbjct: 84 IPDAYILEVSSPGIDRVLRKPRDFERERGKQVDVMLYAPFDGKKQWTGALTDCDG--KIL 141
Query: 117 SFDMETECCTWGLADVRIN 135
+ D + ++ +R++
Sbjct: 142 TIDGGIQIPMEQVSQIRLH 160
>gi|317057641|ref|YP_004106108.1| hypothetical protein Rumal_3009 [Ruminococcus albus 7]
gi|315449910|gb|ADU23474.1| protein of unknown function DUF150 [Ruminococcus albus 7]
Length = 181
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELE 85
V D+ G +MED E F + LDEA+ IP++ E SPG+ R +R P+ E
Sbjct: 48 VLIDKDGGVTMEDCENFTRPFNKILDEAD---PIPQSYVFECGSPGLGRELRKPIHFE 102
>gi|405375806|ref|ZP_11029826.1| transcription termination protein [Chondromyces apiculatus DSM 436]
gi|397085887|gb|EJJ17051.1| transcription termination protein [Myxococcus sp. (contaminant ex
DSM 436)]
Length = 161
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ +L G +++ LD + IP SLEVSSPGV+R +R P+
Sbjct: 41 WVLRLFIDKPGGRVGLDECSQVSRAVDPSLD---VEDFIPHEYSLEVSSPGVDRPLRKPV 97
Query: 83 ELERFKDRAMYVKYVG 98
ER K + + VK G
Sbjct: 98 HFERVKGQKVKVKTFG 113
>gi|430750273|ref|YP_007213181.1| hypothetical protein Theco_2061 [Thermobacillus composti KWC4]
gi|430734238|gb|AGA58183.1| hypothetical protein Theco_2061 [Thermobacillus composti KWC4]
Length = 156
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D ARLDE + IPE LEVSSPG ER ++ P ++ +
Sbjct: 43 VFADKEGGIDIDDCGRISEWLSARLDELD---PIPEAYFLEVSSPGAERPLKKPEDMAKA 99
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWG 128
R ++ VTT P + F RL+SF+ T G
Sbjct: 100 VGRHVF-------VTTYEPIDGMKEFEGRLVSFEDGTAVVEIG 135
>gi|108761060|ref|YP_630294.1| hypothetical protein MXAN_2065 [Myxococcus xanthus DK 1622]
gi|122389560|sp|Q1DAM9.1|RIMP_MYXXD RecName: Full=Ribosome maturation factor RimP
gi|108464940|gb|ABF90125.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
Length = 161
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIP 81
W+ +L G +++ CT +D + ++ IP +LEVSSPGV+R +R P
Sbjct: 41 WVLRLFIDKPGGRVGLDE----CTQVSRAVDPSLDVEDFIPHEYNLEVSSPGVDRPLRKP 96
Query: 82 LELERFKDRAMYVKYVG 98
ER K + + VK G
Sbjct: 97 THFERVKGQQVKVKTFG 113
>gi|337750007|ref|YP_004644169.1| protein RimP [Paenibacillus mucilaginosus KNP414]
gi|379722858|ref|YP_005314989.1| protein RimP [Paenibacillus mucilaginosus 3016]
gi|386725635|ref|YP_006191961.1| protein RimP [Paenibacillus mucilaginosus K02]
gi|336301196|gb|AEI44299.1| RimP [Paenibacillus mucilaginosus KNP414]
gi|378571530|gb|AFC31840.1| RimP [Paenibacillus mucilaginosus 3016]
gi|384092760|gb|AFH64196.1| protein RimP [Paenibacillus mucilaginosus K02]
Length = 152
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D A+LDE + IP+ LE+SSPG ER PL
Sbjct: 40 VYVDKEGGIDIDDCTRVTEYLSAKLDEKD---PIPDAYFLEISSPGAER----PL----- 87
Query: 88 KDRAMYVKYVGETV--TTGSPSESDGVFR--LISFDMETECCTWGLADVRINREKAGKGR 143
K Y K VGE V TT P F L SFD +T T G + I K R
Sbjct: 88 KKTQDYHKAVGEHVFITTYEPVNGLKEFEGTLTSFDEQTVVVTVGKKEHSIPFAKVASAR 147
>gi|414155209|ref|ZP_11411524.1| Ribosome maturation factor rimP [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
gi|411453259|emb|CCO09428.1| Ribosome maturation factor rimP [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
Length = 153
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D +A LD+ + IP+ LEVSSPG+ER ++ P + +RF
Sbjct: 41 VFIDKPGGVDLDDCQAVSEKIDTILDQLD---PIPQAYFLEVSSPGLERPLKKPADFQRF 97
>gi|323701862|ref|ZP_08113532.1| protein of unknown function DUF150 [Desulfotomaculum nigrificans
DSM 574]
gi|333923684|ref|YP_004497264.1| ribosome maturation factor rimP [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323533166|gb|EGB23035.1| protein of unknown function DUF150 [Desulfotomaculum nigrificans
DSM 574]
gi|333749245|gb|AEF94352.1| Ribosome maturation factor rimP [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 153
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + LDE + IP+ LEVSSPG+ER ++ P + ERF
Sbjct: 41 VFIDKPGGVDLDDCQMLSEKLDKLLDELD---PIPQAYFLEVSSPGIERPLKKPEDFERF 97
>gi|317129166|ref|YP_004095448.1| hypothetical protein Bcell_2460 [Bacillus cellulosilyticus DSM
2522]
gi|315474114|gb|ADU30717.1| protein of unknown function DUF150 [Bacillus cellulosilyticus DSM
2522]
Length = 154
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 20/124 (16%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELER 86
V DR G ++D CT +L EA + I + LEVSSPG ER PL+ E+
Sbjct: 38 VYIDRDGGVDLDD----CTAVSEQLSEALDKHDPIDQMYYLEVSSPGAER----PLKTEQ 89
Query: 87 FKDRAMYVKYVGETVTTGSPSESDGVF--RLISFD-----METECCTWGLADVRINREKA 139
RA+ KY+ VTT +P + + VF +L+ F+ MET+ T + V + +K
Sbjct: 90 DIVRAVG-KYIN--VTTYAPIDGEKVFEGKLMHFNDGILSMETKVKT-RVKTVELPYDKI 145
Query: 140 GKGR 143
K R
Sbjct: 146 AKAR 149
>gi|257063652|ref|YP_003143324.1| hypothetical protein Shel_09340 [Slackia heliotrinireducens DSM
20476]
gi|256791305|gb|ACV21975.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM
20476]
Length = 158
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 61 IPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISF 118
P +LEVSSPG++R +R P RF +Y V T P + F +L F
Sbjct: 70 FPGAYTLEVSSPGIDRPLRTPEHFARFAGEDVY-------VMTAKPFDGQSRFNAQLNGF 122
Query: 119 DMETECCTWGL 129
D E+ C GL
Sbjct: 123 DEESGCVLIGL 133
>gi|357059430|ref|ZP_09120272.1| hypothetical protein HMPREF9334_01989 [Selenomonas infelix ATCC
43532]
gi|355371507|gb|EHG18851.1| hypothetical protein HMPREF9334_01989 [Selenomonas infelix ATCC
43532]
Length = 149
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELER- 86
V D++G ++D ++ LD + IP+ LEVSSPG++RV+R P + R
Sbjct: 40 VYIDKTGGVDIDDCQSLSERLEETLDREDF---IPDAYILEVSSPGLDRVLRNPRDFVRE 96
Query: 87 ---FKDRAMYVKYVGETVTTGSPSESDG 111
D +Y + G+ TG + DG
Sbjct: 97 HGKMVDVTLYAPFDGKKQWTGVLAGCDG 124
>gi|403745573|ref|ZP_10954368.1| hypothetical protein URH17368_1670 [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121291|gb|EJY55605.1| hypothetical protein URH17368_1670 [Alicyclobacillus hesperidum
URH17-3-68]
Length = 176
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELER 86
V D+ G ++D C+ +L E +I IPE+ LEVSSPG ER ++ P + ER
Sbjct: 60 VFIDKPGGVDIDD----CSRVSEQLSEQLDIVDPIPESYFLEVSSPGAERPLKKPADFER 115
Query: 87 FKDRAMYV 94
+YV
Sbjct: 116 AIGEHVYV 123
>gi|260887248|ref|ZP_05898511.1| putative cytoplasmic protein [Selenomonas sputigena ATCC 35185]
gi|330838994|ref|YP_004413574.1| Ribosome maturation factor rimP [Selenomonas sputigena ATCC 35185]
gi|260863310|gb|EEX77810.1| putative cytoplasmic protein [Selenomonas sputigena ATCC 35185]
gi|329746758|gb|AEC00115.1| Ribosome maturation factor rimP [Selenomonas sputigena ATCC 35185]
Length = 150
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + T LDE ++ + E LEVSSPG++RV++ + ER
Sbjct: 39 VYLDKEGGIEIDDCQRVSETLEQILDEKDL---LTEAYILEVSSPGLDRVLKKARDFERE 95
Query: 88 KDRAMYVKYV----GETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN 135
+ +A+ V + G+ G+ + D I D E E +A VR++
Sbjct: 96 QGKAVDVTFYAPVDGKKTWVGTLTGYDPGKNAIVLDGEKELPLEKIAQVRLH 147
>gi|451945665|ref|YP_007466260.1| hypothetical protein UWK_00018 [Desulfocapsa sulfexigens DSM 10523]
gi|451905013|gb|AGF76607.1| hypothetical protein UWK_00018 [Desulfocapsa sulfexigens DSM 10523]
Length = 151
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 56 EIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYV----GETVTTGSPSESDG 111
++ +P + +LEVSSPG+ER +R + ERFK + V+ G+ V G ESD
Sbjct: 65 DVEDLVPHSFTLEVSSPGLERPLRSAADFERFKGKKARVRLRHPLDGQKVFVGLIGESDE 124
Query: 112 V-FRLISFDMET 122
+ F L+ D ET
Sbjct: 125 LGFDLLVEDGET 136
>gi|402833847|ref|ZP_10882456.1| hypothetical protein HMPREF1153_1188 [Selenomonas sp. CM52]
gi|402279577|gb|EJU28361.1| hypothetical protein HMPREF1153_1188 [Selenomonas sp. CM52]
Length = 150
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + T LDE ++ + E LEVSSPG++RV++ + ER
Sbjct: 39 VYLDKEGGIEIDDCQRVSETLEQILDEKDL---LTEAYILEVSSPGLDRVLKKARDFERE 95
Query: 88 KDRAMYVKYV----GETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN 135
+ +A+ V + G+ G+ + D I D E E +A VR++
Sbjct: 96 QGKAVDVTFYAPVDGKKTWVGTLTGYDPGKNAIVLDGEKELPLEKIAQVRLH 147
>gi|210622609|ref|ZP_03293269.1| hypothetical protein CLOHIR_01217 [Clostridium hiranonis DSM 13275]
gi|210154110|gb|EEA85116.1| hypothetical protein CLOHIR_01217 [Clostridium hiranonis DSM 13275]
Length = 154
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G S+ + E +LDE + I EN LEVSSPG++R ++ E ++
Sbjct: 41 VVVDKEGGISLNECEEVSRELSPKLDENDF---IEENYYLEVSSPGIDRALKRDKEFVKY 97
Query: 88 KDRAMYVK 95
K R + +K
Sbjct: 98 KGRDVEIK 105
>gi|312898334|ref|ZP_07757724.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
gi|310620253|gb|EFQ03823.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
Length = 153
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +ED +A LD + I + LEVSSPG++R+++ + R+
Sbjct: 40 VFIDKEGGVGLEDCQAVSEKLSEFLD---VKDPITDKYLLEVSSPGLDRILKKDTDFVRY 96
Query: 88 KDRAMYVKY 96
KDR + V +
Sbjct: 97 KDRHVDVHF 105
>gi|408794218|ref|ZP_11205823.1| hypothetical protein LEP1GSC017_3267 [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461453|gb|EKJ85183.1| hypothetical protein LEP1GSC017_3267 [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 169
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 88
D++GS S+ED C T RL E + +L+VSS G ERV+R+P +L RF+
Sbjct: 51 TDKTGSASLED----CETVSRRLKEELDLWGEEFDFTLQVSSAGAERVLRLPEDLSRFQ 105
>gi|336401426|ref|ZP_08582195.1| ribosome maturation factor rimP [Fusobacterium sp. 21_1A]
gi|336161013|gb|EGN64029.1| ribosome maturation factor rimP [Fusobacterium sp. 21_1A]
Length = 156
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 14/80 (17%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W ++ + +G S+ED C+ +++ E +I K I LEVSSPG+ER P
Sbjct: 38 WYIRIFIENLNGDLSIED----CSKLSSKI-EDKIEKLIEHKFFLEVSSPGLER----P- 87
Query: 83 ELERFKDRAMYVKYVGETVT 102
L++ +D Y++++GE +T
Sbjct: 88 -LKKIED---YIRFIGEKIT 103
>gi|326791501|ref|YP_004309322.1| hypothetical protein Clole_2418 [Clostridium lentocellum DSM 5427]
gi|326542265|gb|ADZ84124.1| protein of unknown function DUF150 [Clostridium lentocellum DSM
5427]
Length = 153
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G +++D + LDE + I + LEVSSPG++RV++ E ERF
Sbjct: 41 IYIDKEGGITIQDCQLTSRAIEKVLDEKD---PIKDPYVLEVSSPGLDRVLKKDKEFERF 97
Query: 88 KDRAMYVK 95
K R + VK
Sbjct: 98 KGRLVDVK 105
>gi|402836946|ref|ZP_10885477.1| hypothetical protein HMPREF1152_0401 [Mogibacterium sp. CM50]
gi|402269962|gb|EJU19231.1| hypothetical protein HMPREF1152_0401 [Mogibacterium sp. CM50]
Length = 158
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 19 KMPLWLTQLVACDRS--GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVER 76
K+ +++ + + CD ED+ F + RLDE + I + +LEVSSPG++R
Sbjct: 38 KLRIYMDKPIGCDSEYVDINECEDVTHFLSD---RLDEEDF---IERSYTLEVSSPGLDR 91
Query: 77 VVRIPLELERFKDRAMYVK 95
+ P + ERFK R + VK
Sbjct: 92 ELLKPSDYERFKGRDVEVK 110
>gi|440748962|ref|ZP_20928212.1| transcription termination protein NusA [Mariniradius
saccharolyticus AK6]
gi|436482664|gb|ELP38762.1| transcription termination protein NusA [Mariniradius
saccharolyticus AK6]
Length = 156
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 41 IEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGET 100
I+A RA DE E +PE LEVSSPG++ PL R Y+K VG
Sbjct: 48 IDACARVSRAVGDEIEAKDLMPEAFVLEVSSPGLDH----PLS-----SRRQYLKNVGRK 98
Query: 101 VTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDS 160
+ S SDG D+E + G D++I + KG KK +E L F+
Sbjct: 99 LKV---SLSDG------KDIEGQLSEVGSTDIKILTKVKEKG----KKAQEVILAIPFEQ 145
Query: 161 LR 162
++
Sbjct: 146 IK 147
>gi|410667477|ref|YP_006919848.1| ribosome maturation factor RimP [Thermacetogenium phaeum DSM 12270]
gi|409105224|gb|AFV11349.1| ribosome maturation factor RimP [Thermacetogenium phaeum DSM 12270]
Length = 151
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G + D E + LD+ +I IP LEVSSPGVER ++ P + RF
Sbjct: 39 VFIDKPGGVQLGDCEKASLLIGSELDKHDI---IPHRYYLEVSSPGVERPLKKPEDFLRF 95
Query: 88 KDRAMYVK 95
+ + V+
Sbjct: 96 RGSEIVVR 103
>gi|159046100|ref|YP_001534894.1| hypothetical protein Dshi_3560 [Dinoroseobacter shibae DFL 12]
gi|189040162|sp|A8LQ53.1|RIMP_DINSH RecName: Full=Ribosome maturation factor RimP
gi|157913860|gb|ABV95293.1| protein of unknown function DUF150 [Dinoroseobacter shibae DFL 12]
Length = 196
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 12 RNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSS 71
R RV++ K P Q++A G ++D T A LD + I +N +LEVSS
Sbjct: 31 RLRVMSGKSPTL--QIMAEKPEGGIEVDDCARISTEVSATLD---VEDPIEDNYTLEVSS 85
Query: 72 PGVERVVRIPLELERFKDRAMYVKYVGETVTT 103
PG++R L R KD +V Y + TT
Sbjct: 86 PGIDR------PLTRLKDFDTWVGYEAKIETT 111
>gi|239617902|ref|YP_002941224.1| hypothetical protein Kole_1530 [Kosmotoga olearia TBF 19.5.1]
gi|239506733|gb|ACR80220.1| protein of unknown function DUF150 [Kosmotoga olearia TBF 19.5.1]
Length = 167
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 28 VACDRS-GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELER 86
VA D+ G S+ D E F + +LDE EI I + +L + SPG ER +R P + R
Sbjct: 52 VAIDKEDGYISISDCENFSRAFEKKLDETEI---ISSSYNLVIESPGAERELRKPGDFMR 108
Query: 87 FKDRAMYV 94
F +++ +
Sbjct: 109 FTGKSVKI 116
>gi|410658717|ref|YP_006911088.1| hypothetical protein DHBDCA_p2076 [Dehalobacter sp. DCA]
gi|410661706|ref|YP_006914077.1| hypothetical protein DCF50_p2089 [Dehalobacter sp. CF]
gi|409021072|gb|AFV03103.1| hypothetical protein DHBDCA_p2076 [Dehalobacter sp. DCA]
gi|409024062|gb|AFV06092.1| hypothetical protein DCF50_p2089 [Dehalobacter sp. CF]
Length = 135
Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 24/127 (18%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIP 81
W +L D+ G ++D C +++E + IP+ LEVSSPG+ER P
Sbjct: 19 WYLRLY-IDKEGGVEIDD----CAEVSHQINEVLDKENPIPQAYMLEVSSPGIER----P 69
Query: 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGK 141
L K R Y+KY G+ V+ + +G R GLAD ++ E G+
Sbjct: 70 L-----KKREDYIKYTGKLVSINTTEVFEGYSRFTG-------NLKGLADDQVILEYEGR 117
Query: 142 --GRPLS 146
PLS
Sbjct: 118 EIAIPLS 124
>gi|385799865|ref|YP_005836269.1| hypothetical protein [Halanaerobium praevalens DSM 2228]
gi|309389229|gb|ADO77109.1| protein of unknown function DUF150 [Halanaerobium praevalens DSM
2228]
Length = 155
Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ ++ +++G ++E+ E + LDE + I ++ LEVSSPG+ER ++
Sbjct: 38 WILRIFLENKNGELTIEECEKVSRSLSMILDEED---PIDKSYILEVSSPGLERPLKTEE 94
Query: 83 ELERFKDRAMYVK 95
+ ERFK + VK
Sbjct: 95 DFERFKGELIAVK 107
>gi|332295449|ref|YP_004437372.1| ribosome maturation factor rimP [Thermodesulfobium narugense DSM
14796]
gi|332178552|gb|AEE14241.1| Ribosome maturation factor rimP [Thermodesulfobium narugense DSM
14796]
Length = 159
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ ++ + S++D E A LD ++ IPE+ LEVSSPG+ER ++
Sbjct: 37 WILRVFIDNLEKPISLDDCELVSKKLSAILDYYDL---IPESFYLEVSSPGIERKLKKDS 93
Query: 83 ELERFKDRAMYVKY----VGETVTTGSPSESDGVFRLIS 117
+ RFK + V + + + +SDG + +++
Sbjct: 94 DFTRFKGEEIIVIFQKPNISPIIGILEGIDSDGNYIIVN 132
>gi|326333614|ref|ZP_08199852.1| hypothetical protein NBCG_05048 [Nocardioidaceae bacterium Broad-1]
gi|325948595|gb|EGD40697.1| hypothetical protein NBCG_05048 [Nocardioidaceae bacterium Broad-1]
Length = 166
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+A D+ G + E++ LDE+++ P +LEV+SPGV+R + +P R
Sbjct: 50 IAVDKDGGITHEEVTEATREVNRVLDESDVMGEQP--YTLEVTSPGVDRPLTLPRHWRRN 107
Query: 88 KDRAMYVKYVGETVTTGSPSESD 110
K R + V + TG ESD
Sbjct: 108 KGRLVKVTATDGSTFTGRVKESD 130
>gi|304437179|ref|ZP_07397140.1| protein of hypothetical function DUF150 [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369841|gb|EFM23505.1| protein of hypothetical function DUF150 [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 163
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVR----IPLE 83
V D++G ++D + LD ++ IP+ +LEVSSPG++RV+R E
Sbjct: 54 VYIDKAGGIDIDDCQRLSERLEEILDREDV---IPDAYTLEVSSPGLDRVLRKERDFVRE 110
Query: 84 LERFKDRAMYVKYVGETVTTGSPSESDG 111
R D +Y + G+ TG+ + DG
Sbjct: 111 HGRVVDVTLYAPFEGKKQWTGTLAGYDG 138
>gi|134299808|ref|YP_001113304.1| hypothetical protein Dred_1961 [Desulfotomaculum reducens MI-1]
gi|259585752|sp|A4J5X6.1|RIMP_DESRM RecName: Full=Ribosome maturation factor RimP
gi|134052508|gb|ABO50479.1| protein of unknown function DUF150 [Desulfotomaculum reducens MI-1]
Length = 153
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G ++D + LDE + +P+ LEVSSPG+ER ++ P + E+F
Sbjct: 41 IFIDKPGGIELDDCQGVSEKIDTLLDEID---PVPQAYFLEVSSPGIERPLKKPQDFEKF 97
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 121
+ +TT +P F +L+ ++ E
Sbjct: 98 NGHLV-------NITTFAPINGSKNFIGKLLDYNEE 126
>gi|150021291|ref|YP_001306645.1| hypothetical protein Tmel_1413 [Thermosipho melanesiensis BI429]
gi|259645126|sp|A6LMV9.1|RIMP_THEM4 RecName: Full=Ribosome maturation factor RimP
gi|149793812|gb|ABR31260.1| protein of unknown function DUF150 [Thermosipho melanesiensis
BI429]
Length = 147
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 18 NKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV 77
NK W +++ + S +D E LD+ I IP L VSSPG+ R
Sbjct: 30 NKSGRWFLEIIIDNPYDYISTKDCENVSRKLEFELDKINI---IPNKYYLTVSSPGLNRP 86
Query: 78 VRIPLELERFKDRA--------MYVKYVGETVTTGSPSESDGVFRLISFDME 121
+R + ERF + Y+ Y+ V E+DG + I F E
Sbjct: 87 LRNVKDFERFTGKKAKIKTRENTYIGYIKNVVDNIITFETDG--KFIEFKFE 136
>gi|385234710|ref|YP_005796052.1| hypothetical protein KVU_2217 [Ketogulonicigenium vulgare WSH-001]
gi|343463621|gb|AEM42056.1| hypothetical protein KVU_2217 [Ketogulonicigenium vulgare WSH-001]
Length = 207
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 12 RNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSS 71
R RV+ K Q++A G+ ++D A T A LD + I EN +LEVSS
Sbjct: 31 RIRVMTGKETTL--QIMAQKPDGTIEVDDCAAISTAVSAVLD---VEDPIVENYTLEVSS 85
Query: 72 PGVERVVRIPLELERFKDRAMYVKYVGETVT----------TGSPSESDGVFRLISFDME 121
PG++R L R KD ++ Y + T G ++G LI D
Sbjct: 86 PGIDR------PLTRLKDFDLWDGYTAKIETEELIDGRRRFKGELRGTEGDEILIELDDA 139
Query: 122 TECCTWGL 129
E T GL
Sbjct: 140 AEPVTIGL 147
>gi|183220910|ref|YP_001838906.1| hypothetical protein LEPBI_I1523 [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911006|ref|YP_001962561.1| hypothetical protein LBF_1470 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|226734181|sp|B0SH16.1|RIMP_LEPBA RecName: Full=Ribosome maturation factor RimP
gi|226734677|sp|B0SQH2.1|RIMP_LEPBP RecName: Full=Ribosome maturation factor RimP
gi|167775682|gb|ABZ93983.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167779332|gb|ABZ97630.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 162
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 88
D++GS S+ED C T RL E + +L+VSS G ERV+R+P +L RF+
Sbjct: 44 TDKTGSASLED----CETVSRRLKEELDQWGEEFDFTLQVSSAGAERVLRLPEDLIRFQ 98
>gi|269797843|ref|YP_003311743.1| hypothetical protein [Veillonella parvula DSM 2008]
gi|269094472|gb|ACZ24463.1| protein of unknown function DUF150 [Veillonella parvula DSM 2008]
Length = 152
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + A LDE + I EN LEVSSPG++RV++ +L R+
Sbjct: 40 VYLDKPGGVDLDDCQLVSEKLSAVLDEKD---PITENYLLEVSSPGLDRVLKKDKDLVRY 96
Query: 88 KDRAMYVK 95
R + ++
Sbjct: 97 NGRDVDIQ 104
>gi|217077787|ref|YP_002335505.1| hypothetical protein THA_1728 [Thermosipho africanus TCF52B]
gi|419760387|ref|ZP_14286666.1| Ribosome maturation factor rimP [Thermosipho africanus H17ap60334]
gi|259645125|sp|B7IDT7.1|RIMP_THEAB RecName: Full=Ribosome maturation factor RimP
gi|217037642|gb|ACJ76164.1| hypothetical protein THA_1728 [Thermosipho africanus TCF52B]
gi|407514490|gb|EKF49305.1| Ribosome maturation factor rimP [Thermosipho africanus H17ap60334]
Length = 148
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 18 NKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV 77
NK W ++V + S +D E +LD+ +I IP+ L VSSPG++R
Sbjct: 30 NKSGKWFLEIVIDNPLDYVSTKDCENISREVEFQLDKLDI---IPQRYYLTVSSPGLDRP 86
Query: 78 VRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRL 115
+R + +RF + + +K ET+ D V L
Sbjct: 87 LRSIDDFKRFINNKVKIKLENETIIGYIKDVKDSVIFL 124
>gi|375088710|ref|ZP_09735048.1| hypothetical protein HMPREF9703_01130 [Dolosigranulum pigrum ATCC
51524]
gi|374561675|gb|EHR33014.1| hypothetical protein HMPREF9703_01130 [Dolosigranulum pigrum ATCC
51524]
Length = 156
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G S++D F A LD+ + IP+ LEVSSPG ER ++ ++++
Sbjct: 38 IYIDKVGGVSLDDCTFFSEKVSAVLDQ-QPENFIPQAYYLEVSSPGAERPLKTREDIDQA 96
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWG----LADVRINREKAGKGR 143
++VK G + +G RL+S D +T + + +V I R+ K R
Sbjct: 97 VGEYIHVKLYN---MIGPYNSYEG--RLLSTDEDTITMNYKEKTRVKEVEIQRDNISKAR 151
>gi|282848826|ref|ZP_06258219.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|294791738|ref|ZP_06756886.1| conserved hypothetical protein [Veillonella sp. 6_1_27]
gi|294793599|ref|ZP_06758736.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
gi|416998971|ref|ZP_11939640.1| hypothetical protein HMPREF9323_0443 [Veillonella parvula
ACS-068-V-Sch12]
gi|282581480|gb|EFB86870.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|294455169|gb|EFG23541.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
gi|294456968|gb|EFG25330.1| conserved hypothetical protein [Veillonella sp. 6_1_27]
gi|333977124|gb|EGL77983.1| hypothetical protein HMPREF9323_0443 [Veillonella parvula
ACS-068-V-Sch12]
Length = 152
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + A LDE + I EN LEVSSPG++RV++ +L R+
Sbjct: 40 VYLDKPGGVDLDDCQLVSEKLSAVLDEKD---PITENYLLEVSSPGLDRVLKKDKDLVRY 96
Query: 88 KDRAMYVK 95
R + ++
Sbjct: 97 NGRDVDIQ 104
>gi|313892594|ref|ZP_07826181.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
gi|313118991|gb|EFR42196.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
Length = 156
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ + + D+ G + D + + +D+ ++ I +N LEVSSPG++RV++
Sbjct: 36 WILR-IFIDKDGGVDLNDCQEISVSAGELIDKNDL---ISDNYMLEVSSPGIDRVLKKDK 91
Query: 83 ELERFKDRAMYVK 95
+ R+KD + VK
Sbjct: 92 DFIRYKDSKVSVK 104
>gi|329121256|ref|ZP_08249883.1| hypothetical protein HMPREF9083_0344 [Dialister micraerophilus DSM
19965]
gi|327470190|gb|EGF15653.1| hypothetical protein HMPREF9083_0344 [Dialister micraerophilus DSM
19965]
Length = 156
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ + + D+ G + D + + +D+ ++ I +N LEVSSPG++RV++
Sbjct: 36 WILR-IFIDKDGGVDLNDCQEISVSAGELIDKNDL---ISDNYMLEVSSPGIDRVLKKDK 91
Query: 83 ELERFKDRAMYVK 95
+ R+KD + VK
Sbjct: 92 DFIRYKDSKVSVK 104
>gi|297623579|ref|YP_003705013.1| hypothetical protein [Truepera radiovictrix DSM 17093]
gi|297164759|gb|ADI14470.1| protein of unknown function DUF150 [Truepera radiovictrix DSM
17093]
Length = 146
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 27 LVACDRS--GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLEL 84
L+ DR G +MED+E + LD + + LEV SPG ER +R
Sbjct: 33 LLRIDRRDRGVVTMEDVERATQVFSLELDRLDPFEG---AYRLEVESPGPERPLRTAEHF 89
Query: 85 ERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVR 133
RF V+ GET T SD ++FD+ + T L D++
Sbjct: 90 RRFSGLLAKVRAHGETFTGRVVEVSDAQ---VTFDVHGQPRTLALEDIQ 135
>gi|313893703|ref|ZP_07827270.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441717|gb|EFR60142.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
F0412]
Length = 152
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + A LDE + I EN LEVSSPG++RV++ +L R+
Sbjct: 40 VYLDKPGGVDLDDCQLVSEKLSAVLDEKD---PITENYLLEVSSPGLDRVLKKDKDLIRY 96
Query: 88 KDRAMYVK 95
R + ++
Sbjct: 97 NGRDVDIQ 104
>gi|222099942|ref|YP_002534510.1| hypothetical protein CTN_0968 [Thermotoga neapolitana DSM 4359]
gi|254807290|sp|B9K861.1|RIMP_THENN RecName: Full=Ribosome maturation factor RimP
gi|221572332|gb|ACM23144.1| Hypothetical Protein CTN_0968 [Thermotoga neapolitana DSM 4359]
Length = 150
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ ++V + G S+ D E F LD ++ I + +LEVSSPG++R +R P
Sbjct: 37 WVLRVVIDNPVGYVSVRDCELFSRELERFLDREDL---IEHSYTLEVSSPGLDRPLRGPK 93
Query: 83 ELERFKDR-AMYVKYVGETVTTGSPSESDGV 112
+ +RF + A + G+T S DG+
Sbjct: 94 DYQRFTGKLAKIITKDGKTFIGRIESFVDGI 124
>gi|332638632|ref|ZP_08417495.1| ribosome maturation protein RimP [Weissella cibaria KACC 11862]
Length = 228
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 28 VACDR-SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELER 86
V DR G+ +M+D+ T R+D+ E PE ++VSSPG ER ++ P + E
Sbjct: 39 VLVDRLDGAINMDDLVMLTETIGERMDQIE-PDPFPEAYLMDVSSPGAERELKRPQDYEW 97
Query: 87 FKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCT 126
++ ++V E +E DG ++ DM T T
Sbjct: 98 ALEKYIHVALNQE---VDGENEFDGELLAVTDDMLTLAIT 134
>gi|238927233|ref|ZP_04658993.1| protein of hypothetical function DUF150 [Selenomonas flueggei ATCC
43531]
gi|238884908|gb|EEQ48546.1| protein of hypothetical function DUF150 [Selenomonas flueggei ATCC
43531]
Length = 163
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVR----IPLE 83
V D++G ++D ++ LD + IP+ LEVSSPG++RV+R E
Sbjct: 54 VYIDKTGGIDIDDCQSLSERLEEMLDREDF---IPDAYILEVSSPGLDRVLRKERDFTRE 110
Query: 84 LERFKDRAMYVKYVGETVTTGSPSESDG 111
R D +Y + G+ TG+ + DG
Sbjct: 111 HGRTVDVTLYAPFEGKKQWTGTLAGYDG 138
>gi|78044682|ref|YP_360590.1| hypothetical protein CHY_1770 [Carboxydothermus hydrogenoformans
Z-2901]
gi|91208344|sp|Q3AB94.1|RIMP_CARHZ RecName: Full=Ribosome maturation factor RimP
gi|77996797|gb|ABB15696.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 154
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ ++D + F LDE + IP++ LEVSSPG+ER ++ + E+F
Sbjct: 42 IYIDKDEGVDLDDCQNFSERIGVILDEED---PIPQSYYLEVSSPGIERPLKKLADFEKF 98
Query: 88 KDRAMYVK 95
R +K
Sbjct: 99 AGREAQIK 106
>gi|313896717|ref|ZP_07830265.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312974634|gb|EFR40101.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 149
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELER 86
V D+ G +ED C T RL+E + I + LEVSSPG++RV+R + ER
Sbjct: 40 VYIDKEGGIDIED----CRTLSERLEEILDREDFIADAYILEVSSPGLDRVLRKARDFER 95
Query: 87 FK----DRAMYVKYVGETVTTGSPSESDGVFRLISFDM 120
D A+Y G+ TG + DG ++ D+
Sbjct: 96 EHGKRVDVALYAPLDGKKNLTGELTGYDGNVLILDDDV 133
>gi|238019443|ref|ZP_04599869.1| hypothetical protein VEIDISOL_01312 [Veillonella dispar ATCC 17748]
gi|237864142|gb|EEP65432.1| hypothetical protein VEIDISOL_01312 [Veillonella dispar ATCC 17748]
Length = 170
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + A LDE + I EN LEVSSPG++RV++ +L R+
Sbjct: 58 VYLDKPGGVDLDDCQLVSEKLSAVLDEKD---PITENYLLEVSSPGLDRVLKKDKDLVRY 114
Query: 88 KDR 90
R
Sbjct: 115 NGR 117
>gi|441519008|ref|ZP_21000715.1| ribosome maturation factor RimP [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454157|dbj|GAC58676.1| ribosome maturation factor RimP [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 185
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ DR G S++++ LD A++ E LEVS+PG+ R + +P R
Sbjct: 47 IIVDRDGGASLDEVADLSRELSTALDAADVFGD--EAYDLEVSTPGIGRPLTLPRHWRRA 104
Query: 88 KDRAMYVKYVGETV 101
+ R + V+ ETV
Sbjct: 105 RGRKVTVRTAAETV 118
>gi|333897121|ref|YP_004470995.1| ribosome maturation factor rimP [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112386|gb|AEF17323.1| Ribosome maturation factor rimP [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 151
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G S++D + +LDE + I + LEVSSPG++R ++ + E+F
Sbjct: 39 VYIDKDGGVSLDDCQIISEYLSEKLDEVD---PIDNSYILEVSSPGIDRPLKTKRDFEKF 95
Query: 88 K 88
K
Sbjct: 96 K 96
>gi|169831085|ref|YP_001717067.1| hypothetical protein Daud_0922 [Candidatus Desulforudis audaxviator
MP104C]
gi|226696028|sp|B1I359.1|RIMP_DESAP RecName: Full=Ribosome maturation factor RimP
gi|169637929|gb|ACA59435.1| protein of unknown function DUF150 [Candidatus Desulforudis
audaxviator MP104C]
Length = 154
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +++D EA LD+ + IP + LEVSSPG+ER ++ + RF
Sbjct: 41 VFLDKPGGINLDDCEAVSRELDRALDDVDF---IPHSYVLEVSSPGLERPLKRAEDYVRF 97
Query: 88 KDRAMYV 94
K R + +
Sbjct: 98 KGRLVQI 104
>gi|390934923|ref|YP_006392428.1| Ribosome maturation factor rimP [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570424|gb|AFK86829.1| Ribosome maturation factor rimP [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 151
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G S++D + +LDE + I + LEVSSPG++R ++ + E+F
Sbjct: 39 VYIDKDGGVSLDDCQIISEYLSEKLDEVD---PIDNSYILEVSSPGIDRPLKTKRDFEKF 95
Query: 88 K 88
K
Sbjct: 96 K 96
>gi|239826653|ref|YP_002949277.1| hypothetical protein GWCH70_1151 [Geobacillus sp. WCH70]
gi|259585779|sp|C5D9C5.1|RIMP_GEOSW RecName: Full=Ribosome maturation factor RimP
gi|239806946|gb|ACS24011.1| protein of unknown function DUF150 [Geobacillus sp. WCH70]
Length = 157
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 51 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESD 110
+LDE + IP N LEVSSPG ER ++ P + + + +Y+K T P E +
Sbjct: 63 KLDEVD---PIPHNYFLEVSSPGAERPLKKPKDFTKAIGKNVYIK-------TYEPIEGE 112
Query: 111 GVF--RLISFDMETECCT 126
F LI FD T T
Sbjct: 113 KEFEGELIGFDGTTVSVT 130
>gi|289766526|ref|ZP_06525904.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|422939806|ref|ZP_16967178.1| hypothetical protein HMPREF9094_1231 [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|423137622|ref|ZP_17125265.1| ribosome maturation factor rimP [Fusobacterium nucleatum subsp.
animalis F0419]
gi|289718081|gb|EFD82093.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|339890657|gb|EGQ79751.1| hypothetical protein HMPREF9094_1231 [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|371959674|gb|EHO77352.1| ribosome maturation factor rimP [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 156
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 14/80 (17%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W ++ + +G S+ED C+ +++ E +I K I LEVSSPG+ER P
Sbjct: 38 WYIRIFIENLNGDLSIED----CSKLSSKI-EDKIEKLIEHKFFLEVSSPGLER----P- 87
Query: 83 ELERFKDRAMYVKYVGETVT 102
L++ +D Y+++ GE +T
Sbjct: 88 -LKKIED---YIRFTGEKIT 103
>gi|374997048|ref|YP_004972547.1| hypothetical protein Desor_4628 [Desulfosporosinus orientis DSM
765]
gi|357215414|gb|AET70032.1| hypothetical protein Desor_4628 [Desulfosporosinus orientis DSM
765]
Length = 152
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W +L D+ G M+D A LDE IP+ LEVSSPG+ER PL
Sbjct: 36 WYLRLF-IDKDGGVDMDDCTAVSHVVSEMLDEK---NPIPQAYMLEVSSPGLER----PL 87
Query: 83 ELERFKDRAMYVKYVGETVTTGSPSESDGVFRLIS 117
K +V++ G VT + S+ G + I
Sbjct: 88 -----KKEEDFVRFQGNLVTVLTTSKFMGYEKFIG 117
>gi|237743253|ref|ZP_04573734.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|336420050|ref|ZP_08600296.1| hypothetical protein HMPREF0401_02316 [Fusobacterium sp. 11_3_2]
gi|229433032|gb|EEO43244.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|336162191|gb|EGN65173.1| hypothetical protein HMPREF0401_02316 [Fusobacterium sp. 11_3_2]
Length = 156
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 14/80 (17%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W ++ + +G S+ED C+ +++ E +I K I LEVSSPG+ER P
Sbjct: 38 WYIRIFIENLNGDLSIED----CSKLSSKI-EDKIEKLIEHKFFLEVSSPGLER----P- 87
Query: 83 ELERFKDRAMYVKYVGETVT 102
L++ +D Y+++ GE +T
Sbjct: 88 -LKKIED---YIRFTGEKIT 103
>gi|260495124|ref|ZP_05815253.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|260197567|gb|EEW95085.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
Length = 156
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 14/80 (17%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W ++ + +G S+ED C+ +++ E +I K I LEVSSPG+ER P
Sbjct: 38 WYIRIFIENLNGDLSIED----CSKLSSKI-EDKIEKLIEHKFFLEVSSPGLER----P- 87
Query: 83 ELERFKDRAMYVKYVGETVT 102
L++ +D Y+++ GE +T
Sbjct: 88 -LKKIED---YIRFTGEKIT 103
>gi|442319339|ref|YP_007359360.1| hypothetical protein MYSTI_02360 [Myxococcus stipitatus DSM 14675]
gi|441486981|gb|AGC43676.1| hypothetical protein MYSTI_02360 [Myxococcus stipitatus DSM 14675]
Length = 161
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIP 81
W+ +L G +++ C+ +D ++ IP SLEVSSPGV+R ++ P
Sbjct: 41 WVLRLFIDKPGGRVGLDE----CSQVSRAVDPVLDVEDFIPHEYSLEVSSPGVDRPLKKP 96
Query: 82 LELERFKDRAMYVKYVG 98
ER + + + VK G
Sbjct: 97 AHFERVQGQKVKVKTFG 113
>gi|310658998|ref|YP_003936719.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|308825776|emb|CBH21814.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 152
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVR 79
+ D+ G S++D + F +LDE + I EN LE+SSPG++R ++
Sbjct: 39 IYIDKQGKMSLDDCQHFSHLISEKLDELD---PIEENYMLEISSPGLDRHLK 87
>gi|186494075|ref|NP_001117572.1| uncharacterized protein [Arabidopsis thaliana]
gi|332196774|gb|AEE34895.1| uncharacterized protein [Arabidopsis thaliana]
Length = 235
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEV 69
G P+M+++E F ++ RLD+A K IPE+ +LEV
Sbjct: 172 GCPTMDELEEFSREFKKRLDDAGAEKVIPEDLALEV 207
>gi|429727386|ref|ZP_19262159.1| hypothetical protein HMPREF9998_00098 [Peptostreptococcus
anaerobius VPI 4330]
gi|429152688|gb|EKX95503.1| hypothetical protein HMPREF9998_00098 [Peptostreptococcus
anaerobius VPI 4330]
Length = 154
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +++ E LDE ++ I EN LEV SPG++R+++ E E++
Sbjct: 40 VIIDSEDGIGLDECEKVSRDLNPILDEKDM---IEENYLLEVCSPGIDRILKRDHEYEKY 96
Query: 88 KDRAMYVK-YVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGR 143
+ + VK Y + G E+D L + + + ++++NR++ + R
Sbjct: 97 SGKLVEVKLYANNDIVKGKHFEAD----LCGLEDDNIVLLYKGKELKLNRKEVAQVR 149
>gi|56694992|ref|YP_165338.1| hypothetical protein SPO0064 [Ruegeria pomeroyi DSS-3]
gi|81350793|sp|Q5LWL1.1|RIMP_SILPO RecName: Full=Ribosome maturation factor RimP
gi|56676729|gb|AAV93395.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
Length = 208
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 26 QLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELE 85
Q++A G ++D A A LD + I + +LEVSSPG++R L
Sbjct: 44 QIMADKPDGGIEVDDCAAISNAVSATLD---VEDPILDAYTLEVSSPGIDR------PLT 94
Query: 86 RFKDRAMYVKYVGETVTT----------GSPSESDGVFRLISFDMETECCTWGL 129
R KD M+ Y + TT G + +G LI+ D E T GL
Sbjct: 95 RLKDFEMFEGYEAKIETTEMIDGRRRFRGELAGIEGNEVLINLDQNGETVTIGL 148
>gi|303229567|ref|ZP_07316355.1| conserved hypothetical protein [Veillonella atypica
ACS-134-V-Col7a]
gi|303232094|ref|ZP_07318797.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6]
gi|302513200|gb|EFL55239.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6]
gi|302515692|gb|EFL57646.1| conserved hypothetical protein [Veillonella atypica
ACS-134-V-Col7a]
Length = 152
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + A LDE + I EN LEVSSPG++RV++ + R+
Sbjct: 40 VYLDKPGGVDLDDCQMVSEKLSAALDEKD---PIAENYLLEVSSPGLDRVLKKDKDFIRY 96
Query: 88 KDRAMYVK 95
R + ++
Sbjct: 97 NGRDVDIQ 104
>gi|150390439|ref|YP_001320488.1| hypothetical protein Amet_2677 [Alkaliphilus metalliredigens QYMF]
gi|259585692|sp|A6TRL1.1|RIMP_ALKMQ RecName: Full=Ribosome maturation factor RimP
gi|149950301|gb|ABR48829.1| protein of unknown function DUF150 [Alkaliphilus metalliredigens
QYMF]
Length = 152
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +++D + +LDEA+ I EN LEVSSPG++R ++ ++ +F
Sbjct: 39 VYIDKPGGITLDDCQKVSEGLSKKLDEAD---PIVENYFLEVSSPGLDRPLKREVDFLKF 95
Query: 88 KDRAMYVK 95
K + +K
Sbjct: 96 KGEMIELK 103
>gi|401680035|ref|ZP_10811959.1| hypothetical protein HMPREF1151_1866 [Veillonella sp. ACP1]
gi|400219162|gb|EJO50033.1| hypothetical protein HMPREF1151_1866 [Veillonella sp. ACP1]
Length = 152
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + A LDE + I EN LEVSSPG++RV++ + R+
Sbjct: 40 VYLDKPGGVDLDDCQIVSEKLSAALDEKD---PIAENYLLEVSSPGLDRVLKKDKDFIRY 96
Query: 88 KDRAMYVK 95
R + ++
Sbjct: 97 NGRDVDIQ 104
>gi|118443860|ref|YP_878212.1| hypothetical protein NT01CX_2139 [Clostridium novyi NT]
gi|259585741|sp|A0Q0R0.1|RIMP_CLONN RecName: Full=Ribosome maturation factor RimP
gi|118134316|gb|ABK61360.1| Hypothetical UPF0090 protein [Clostridium novyi NT]
Length = 154
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D S ++ED E LDE + I ++ LEVSSPG+ERV+ L ++
Sbjct: 42 IYIDSSKGINLEDCEKVSRKVSDILDEKD---PISDSYYLEVSSPGIERVLYTEEHLHKY 98
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGK 141
+ + VK + GS E G LISF+ +T + I RE+ K
Sbjct: 99 TNNQIIVKLA--KLFEGS-REHQG--NLISFNDDTVTIEKENESINIPRERIKK 147
>gi|429759694|ref|ZP_19292190.1| hypothetical protein HMPREF0870_00623 [Veillonella atypica KON]
gi|429179284|gb|EKY20540.1| hypothetical protein HMPREF0870_00623 [Veillonella atypica KON]
Length = 154
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++D + A LDE + I EN LEVSSPG++RV++ + R+
Sbjct: 42 VYLDKPGGVDLDDCQMVSEKLSAALDEKD---PIAENYLLEVSSPGLDRVLKKDKDFIRY 98
Query: 88 KDRAMYVK 95
R + ++
Sbjct: 99 NGRDVDIQ 106
>gi|289423156|ref|ZP_06424971.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289156487|gb|EFD05137.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 154
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +++ E LDE ++ I EN LEV SPG++R+++ E E++
Sbjct: 40 VIIDSEDGIGLDECEKVSRDLNPILDEKDM---IEENYLLEVCSPGIDRILKRDHEYEKY 96
Query: 88 KDRAMYVK-YVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGR 143
+ + VK Y + G E+D L + + + ++++NR++ + R
Sbjct: 97 SGKLVEVKLYANNDIVKGKHFEAD----LCGLEDDNIVLLYKGKELKLNRKEVAQVR 149
>gi|217964532|ref|YP_002350210.1| hypothetical protein LMHCC_1249 [Listeria monocytogenes HCC23]
gi|290893568|ref|ZP_06556551.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|386008092|ref|YP_005926370.1| hypothetical protein lmo4a_1377 [Listeria monocytogenes L99]
gi|386026693|ref|YP_005947469.1| hypothetical protein LMM7_1406 [Listeria monocytogenes M7]
gi|404407758|ref|YP_006690473.1| hypothetical protein LMOSLCC2376_1275 [Listeria monocytogenes
SLCC2376]
gi|422409535|ref|ZP_16486496.1| conserved hypothetical protein [Listeria monocytogenes FSL F2-208]
gi|422809401|ref|ZP_16857812.1| hypothetical protein LMIV_1057 [Listeria monocytogenes FSL J1-208]
gi|254800006|sp|B8DG06.1|RIMP_LISMH RecName: Full=Ribosome maturation factor RimP
gi|217333802|gb|ACK39596.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|290556913|gb|EFD90444.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|307570902|emb|CAR84081.1| conserved hypothetical protein [Listeria monocytogenes L99]
gi|313608988|gb|EFR84730.1| conserved hypothetical protein [Listeria monocytogenes FSL F2-208]
gi|336023274|gb|AEH92411.1| hypothetical protein LMM7_1406 [Listeria monocytogenes M7]
gi|378753015|gb|EHY63600.1| hypothetical protein LMIV_1057 [Listeria monocytogenes FSL J1-208]
gi|404241907|emb|CBY63307.1| hypothetical protein LMOSLCC2376_1275 [Listeria monocytogenes
SLCC2376]
Length = 155
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + V + P W ++ D+ G +++ A ++DE + I +N
Sbjct: 17 DELQLELVDIVFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDEND---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVS-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>gi|302389799|ref|YP_003825620.1| hypothetical protein Toce_1241 [Thermosediminibacter oceani DSM
16646]
gi|302200427|gb|ADL07997.1| protein of unknown function DUF150 [Thermosediminibacter oceani DSM
16646]
Length = 162
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKD 89
D+ G +++D + RLD I IP + LEVSSPGVER PL+ E+
Sbjct: 43 IDKPGGITLDDCQEVSEEISRRLD---IEDPIPHSYILEVSSPGVER----PLKKEK--- 92
Query: 90 RAMYVKYVGETV 101
++KY+G V
Sbjct: 93 --DFLKYIGSEV 102
>gi|170288838|ref|YP_001739076.1| hypothetical protein TRQ2_1046 [Thermotoga sp. RQ2]
gi|281412458|ref|YP_003346537.1| hypothetical protein Tnap_1036 [Thermotoga naphthophila RKU-10]
gi|226734063|sp|B1LAP5.1|RIMP_THESQ RecName: Full=Ribosome maturation factor RimP
gi|170176341|gb|ACB09393.1| protein of unknown function DUF150 [Thermotoga sp. RQ2]
gi|281373561|gb|ADA67123.1| protein of unknown function DUF150 [Thermotoga naphthophila RKU-10]
Length = 150
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ +++ + G S+ D E F LD ++ I + +LEVSSPG++R +R P
Sbjct: 37 WILRIIIDNPMGYVSVRDCELFSREMERFLDREDL---IEHSYTLEVSSPGLDRPLRGPR 93
Query: 83 ELERF---------KDRAMYVKYVGETVTTGSPSESDG 111
+ RF KD ++ + E+ G+ + SDG
Sbjct: 94 DYVRFTGKLAKIVTKDGKTFIGRI-ESFVDGTITISDG 130
>gi|148263955|ref|YP_001230661.1| hypothetical protein Gura_1898 [Geobacter uraniireducens Rf4]
gi|189030115|sp|A5GF83.1|RIMP_GEOUR RecName: Full=Ribosome maturation factor RimP
gi|146397455|gb|ABQ26088.1| protein of unknown function DUF150 [Geobacter uraniireducens Rf4]
Length = 159
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERFK 88
D+ G +++D C + L E ++ I E+ SLEVSSPG++R ++ + +RFK
Sbjct: 43 VDKEGGVNLDD----CASVSRELSEVLDVEDVISEHYSLEVSSPGIDRPLKKVEDFQRFK 98
Query: 89 DRAMYVK 95
R + ++
Sbjct: 99 GRLVKIR 105
>gi|383457990|ref|YP_005371979.1| hypothetical protein COCOR_06026 [Corallococcus coralloides DSM
2259]
gi|380730715|gb|AFE06717.1| hypothetical protein COCOR_06026 [Corallococcus coralloides DSM
2259]
Length = 161
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIP 81
W+ +L G +++ C+ +D ++ IP+ +LEVSSPGV R ++ P
Sbjct: 41 WVLRLFIDKPGGRVGLDE----CSQVSRAVDPVLDVEDFIPQEYNLEVSSPGVNRPLKKP 96
Query: 82 LELERFKDRAMYVKYVG 98
ER K + + VK G
Sbjct: 97 AHFERVKGQKVKVKTFG 113
>gi|441522848|ref|ZP_21004487.1| ribosome maturation factor RimP [Gordonia sihwensis NBRC 108236]
gi|441457488|dbj|GAC62448.1| ribosome maturation factor RimP [Gordonia sihwensis NBRC 108236]
Length = 181
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ DR G S++ + + A DE+++ P + LEV++PG+ R + +P R
Sbjct: 41 IVVDRDGGVSLDAVAELSRSLEAVFDESDLLGESPYD--LEVTTPGIGRPLTLPRHWRRN 98
Query: 88 KDRAMYVKYVGETV 101
+ R + V+Y E V
Sbjct: 99 QGRKVRVEYTDEGV 112
>gi|336113851|ref|YP_004568618.1| hypothetical protein BCO26_1173 [Bacillus coagulans 2-6]
gi|335367281|gb|AEH53232.1| protein of unknown function DUF150 [Bacillus coagulans 2-6]
Length = 155
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W + V D+ +E+ +LDEA+ IP N LEVSSPG ER ++
Sbjct: 35 WFLR-VYIDKENGVDIEECGLVSERLGEKLDEAD---PIPHNYFLEVSSPGAERPLKKAR 90
Query: 83 ELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISF 118
+ ER R + VK T P + + F +LI+F
Sbjct: 91 DFERAVGRTVLVK-------TYEPLDGEKTFQGKLIAF 121
>gi|162454077|ref|YP_001616444.1| hypothetical protein sce5801 [Sorangium cellulosum So ce56]
gi|259586198|sp|A9G896.1|RIMP_SORC5 RecName: Full=Ribosome maturation factor RimP
gi|161164659|emb|CAN95964.1| hypothetical protein sce5801 [Sorangium cellulosum So ce56]
Length = 208
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 29 ACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 88
A D G ++ED + LD ++ IP + +LEVSSPG++R +R E RF
Sbjct: 52 ADDAGGGVTLEDCADVSRDVSSVLDVEDL---IPNHYNLEVSSPGLDRRLRTAAEFARFL 108
Query: 89 DRAMYVKYV 97
R VK
Sbjct: 109 GRTAKVKLA 117
>gi|294500901|ref|YP_003564601.1| hypothetical protein BMQ_4155 [Bacillus megaterium QM B1551]
gi|294350838|gb|ADE71167.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
Length = 156
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +ED A ++D + IP N LEVSSPG ER ++ + ER
Sbjct: 40 VFIDSDNGVDIEDCGAVSEKLSEKMDAVD---PIPHNYFLEVSSPGAERPLKKDKDFERA 96
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 122
+ +Y+K T P E F L SFD ET
Sbjct: 97 IGKHVYIK-------TYEPIEGAKEFEGELQSFDGET 126
>gi|51892656|ref|YP_075347.1| hypothetical protein STH1518 [Symbiobacterium thermophilum IAM
14863]
gi|81388945|sp|Q67P90.1|RIMP_SYMTH RecName: Full=Ribosome maturation factor RimP
gi|51856345|dbj|BAD40503.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 160
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +D EA A+LDE I + P + EVSSPG++R PL+ E
Sbjct: 43 VYIDKEGGVGFDDCEALSRVVDAQLDE--ILPNPPYDF-FEVSSPGLDR----PLKRE-- 93
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN---REKAGKGRP 144
A + +YVG V + + DG SF E + GL D R+ E G+G+
Sbjct: 94 ---ADFARYVGHKVVVTTYAPVDG---QKSFVGELQ----GLVDGRVTLTLTEGKGRGQT 143
Query: 145 LS---KKQREWRLNTTF 158
++ K+ RL F
Sbjct: 144 IALDRKQVASARLYVEF 160
>gi|284048696|ref|YP_003399035.1| hypothetical protein Acfer_1360 [Acidaminococcus fermentans DSM
20731]
gi|283952917|gb|ADB47720.1| protein of unknown function DUF150 [Acidaminococcus fermentans DSM
20731]
Length = 153
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W + V D++G ++D A +LDE + I E LEVSSPG++R ++
Sbjct: 36 WFLR-VFIDKAGGIDIDDCSAVSNALAKKLDEEDF---IKEKYYLEVSSPGIDRPLKKDK 91
Query: 83 ELERFK----DRAMYVKYVGETVTTGSPSESDG 111
+LE D A + Y G+ T D
Sbjct: 92 DLEAHYGQKVDLAFFAPYEGKKQLTAVLKSHDA 124
>gi|340758799|ref|ZP_08695381.1| hypothetical protein FVAG_02074 [Fusobacterium varium ATCC 27725]
gi|340577482|gb|EES65094.2| hypothetical protein FVAG_02074 [Fusobacterium varium ATCC 27725]
Length = 150
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W ++ + G ++ED C T ++DE +I K I + LEVSSPG+ER ++
Sbjct: 31 WYVRIYVENLEGDITLED----CATISNKVDE-DIDKLIEQRFFLEVSSPGIERPLKKID 85
Query: 83 ELERFK 88
+ RFK
Sbjct: 86 DYIRFK 91
>gi|312111639|ref|YP_003989955.1| hypothetical protein GY4MC1_2648 [Geobacillus sp. Y4.1MC1]
gi|336236014|ref|YP_004588630.1| hypothetical protein Geoth_2661 [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720558|ref|ZP_17694740.1| ribosome maturation protein rimP [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216740|gb|ADP75344.1| protein of unknown function DUF150 [Geobacillus sp. Y4.1MC1]
gi|335362869|gb|AEH48549.1| protein of unknown function DUF150 [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365911|gb|EID43202.1| ribosome maturation protein rimP [Geobacillus thermoglucosidans
TNO-09.020]
Length = 157
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 40 DIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVK 95
DIE C T +L E + IP N LEVSSPG ER ++ P + R + +Y+K
Sbjct: 49 DIEQ-CGTVSEKLSEKLDEVDPIPHNYFLEVSSPGAERPLKKPADFTRAIGKHVYIK 104
>gi|311030089|ref|ZP_07708179.1| hypothetical protein Bm3-1_06021 [Bacillus sp. m3-13]
Length = 156
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +ED +LDE + IP N LEVSSPG ER ++ ++E
Sbjct: 40 VFVDKEGGIDIEDCGTVSEKLSEKLDELD---PIPHNYFLEVSSPGAERPLKKKEDIE-- 94
Query: 88 KDRAMYVKYVGETVTTGSPSESDGV--FR--LISFDMETECCTWGL----ADVRINREKA 139
K VG+ V + DG+ F L+ FD ET + + +V I K
Sbjct: 95 -------KSVGKYVNIKTYEPIDGLKSFEGDLLDFDGETIKLSMTIKTRKKEVSIPYPKV 147
Query: 140 GKGR 143
K R
Sbjct: 148 AKAR 151
>gi|403253289|ref|ZP_10919592.1| hypothetical protein EMP_05911 [Thermotoga sp. EMP]
gi|402811553|gb|EJX26039.1| hypothetical protein EMP_05911 [Thermotoga sp. EMP]
Length = 150
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ +++ + G S+ D E F LD + I + +LEVSSPG++R +R P
Sbjct: 37 WVLRIIIDNPVGYVSVRDCELFSREMERFLDREDF---IEHSYTLEVSSPGLDRPLRGPR 93
Query: 83 ELERF---------KDRAMYVKYVGETVTTGSPSESDG 111
+ RF KD +V + E+ G+ + SDG
Sbjct: 94 DYVRFTGKLAKIVTKDGKTFVGRI-ESFVDGTITISDG 130
>gi|154497679|ref|ZP_02036057.1| hypothetical protein BACCAP_01655 [Bacteroides capillosus ATCC
29799]
gi|150273177|gb|EDN00322.1| hypothetical protein BACCAP_01655 [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 151
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +++D EA LDEA+ I + +LEVSS G++RV+R P + F
Sbjct: 39 VYLDKEGGVNIDDCEAVSRPLSDALDEAD---PIEGSYTLEVSSAGIDRVLRHPEHFDAF 95
>gi|325847928|ref|ZP_08170099.1| hypothetical protein HMPREF9246_0391 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480797|gb|EGC83851.1| hypothetical protein HMPREF9246_0391 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 146
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
+ G +++D E RLDE ++ KS LEVSSP + R ++ +LER KD
Sbjct: 42 KDGGITIDDCEKTSNLLSERLDEIDLIKSF---YYLEVSSPDLSRPLKTDRDLERNKDEL 98
Query: 92 MYVK 95
+ VK
Sbjct: 99 LEVK 102
>gi|212696552|ref|ZP_03304680.1| hypothetical protein ANHYDRO_01090 [Anaerococcus hydrogenalis DSM
7454]
gi|212676488|gb|EEB36095.1| hypothetical protein ANHYDRO_01090 [Anaerococcus hydrogenalis DSM
7454]
Length = 146
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
+ G +++D E RLDE ++ KS LEVSSP + R ++ +LER KD
Sbjct: 42 KDGGITIDDCEKTSNLLSERLDEIDLIKSF---YYLEVSSPDLSRPLKTDRDLERNKDEL 98
Query: 92 MYVK 95
+ VK
Sbjct: 99 LEVK 102
>gi|167772659|ref|ZP_02444712.1| hypothetical protein ANACOL_04040 [Anaerotruncus colihominis DSM
17241]
gi|167665137|gb|EDS09267.1| hypothetical protein ANACOL_04040 [Anaerotruncus colihominis DSM
17241]
Length = 159
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
DR G ++++ EAF LDEA+ I ++ +LEV SPGVER + +++
Sbjct: 49 DREGGVTIDECEAFSREVSDLLDEAD---PIDQSYTLEVGSPGVERKLTKDWHFQKYIGA 105
Query: 91 AMYVKYV----GETVTTGSPSESDGVFRLISFDMETE 123
++V+ + GE G+ S + + D E E
Sbjct: 106 QVHVRLIRPVEGERDFVGALSSYENGVVAVLLDDELE 142
>gi|427407220|ref|ZP_18897425.1| hypothetical protein HMPREF9161_01785 [Selenomonas sp. F0473]
gi|425707695|gb|EKU70739.1| hypothetical protein HMPREF9161_01785 [Selenomonas sp. F0473]
Length = 166
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 21/121 (17%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELER 86
V D+ +ED C T RL+E + I + LEVSSPG++RV+R P + +R
Sbjct: 57 VYIDKEAGIDIED----CRTLSERLEEILDREDFIADAYILEVSSPGLDRVLRKPRDFDR 112
Query: 87 FK----DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKG 142
+ D +Y + G+ TG + D ET G DVRI E+ +
Sbjct: 113 ERGKTVDVTLYAPHAGKKNFTGVLAGHD----------ETALILDG--DVRIPMEQVSQV 160
Query: 143 R 143
R
Sbjct: 161 R 161
>gi|403378765|ref|ZP_10920822.1| protein RimP [Paenibacillus sp. JC66]
Length = 152
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 13/123 (10%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W + V D+ G +ED A+LDE + IP LEVSSPG ER ++ P
Sbjct: 36 WFLR-VYVDKEGGIDIEDCGRVSEFLSAQLDERD---PIPSAYFLEVSSPGAERPLKKPR 91
Query: 83 ELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMETECCTWGLADVRINREKAG 140
+ ER + + VT P + F L S+D G RI +K
Sbjct: 92 DYERAVGKHV-------LVTVYEPVDGLKEFEGTLTSYDETGLAVAIGQKTYRIPADKVA 144
Query: 141 KGR 143
R
Sbjct: 145 SAR 147
>gi|312143667|ref|YP_003995113.1| hypothetical protein Halsa_1332 [Halanaerobium hydrogeniformans]
gi|311904318|gb|ADQ14759.1| protein of unknown function DUF150 [Halanaerobium hydrogeniformans]
Length = 156
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ ++ ++ G ++E+ E LDE + I ++ LEVSSPG+ER ++
Sbjct: 38 WILRVFLENKEGELTIEECERVSRALSVILDEED---PIDKSYILEVSSPGLERPLKTEE 94
Query: 83 ELERFKDRAMYVK 95
+ ERF+ + VK
Sbjct: 95 DFERFQGELISVK 107
>gi|384045248|ref|YP_005493265.1| hypothetical protein BMWSH_1072 [Bacillus megaterium WSH-002]
gi|345442939|gb|AEN87956.1| hypothetical protein BMWSH_1072 [Bacillus megaterium WSH-002]
Length = 165
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +ED A ++D + IP N LEVSSPG ER ++ + ER
Sbjct: 49 VFIDSDTGVDIEDCGAVSEKLSEKMDAVD---PIPHNYFLEVSSPGAERPLKKDKDFERA 105
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 122
+ +Y+K T P E F L SFD ET
Sbjct: 106 IGKHVYIK-------TYEPIEGAKEFEGELQSFDGET 135
>gi|442804542|ref|YP_007372691.1| ribosome maturation factor RimP [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740392|gb|AGC68081.1| ribosome maturation factor RimP [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 154
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +++D EA +LDE + I ++ LEVSSPG ER + + E+
Sbjct: 41 VYIDKDGGVTLDDCEAVSQPLSDKLDEVD---PIEQSYLLEVSSPGAERPFKTARDFEKA 97
Query: 88 KDRAMYVK-----------------YVGETVTTGSPSESDGVFRL 115
+ K Y GETVT + + ++RL
Sbjct: 98 MGEYVMAKLYKAVNGKKTVEGILEGYDGETVTILTDEDKREIYRL 142
>gi|365853665|ref|ZP_09393932.1| hypothetical protein HMPREF9103_02728 [Lactobacillus parafarraginis
F0439]
gi|363712290|gb|EHL95989.1| hypothetical protein HMPREF9103_02728 [Lactobacillus parafarraginis
F0439]
Length = 158
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +++D +LDE + IP+ LEVSSPG ER +R EL +
Sbjct: 39 VYIDKKGGVTIDDCVLVSDELGEKLDEMD-PDPIPQQYFLEVSSPGAERPLRNDDELSQA 97
Query: 88 KDRAMYV 94
D ++V
Sbjct: 98 VDEYVHV 104
>gi|295706247|ref|YP_003599322.1| hypothetical protein BMD_4142 [Bacillus megaterium DSM 319]
gi|294803906|gb|ADF40972.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
Length = 156
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +ED A ++D + IP N LEVSSPG ER ++ + ER
Sbjct: 40 VFIDSDTGVDIEDCGAVSEKLSEKMDAVD---PIPHNYFLEVSSPGAERPLKKDKDFERA 96
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 122
+ +Y+K T P E F L SFD ET
Sbjct: 97 IGKHVYIK-------TYEPIEGAKEFEGELQSFDGET 126
>gi|83589894|ref|YP_429903.1| hypothetical protein Moth_1046 [Moorella thermoacetica ATCC 39073]
gi|91207996|sp|Q2RJM9.1|RIMP_MOOTA RecName: Full=Ribosome maturation factor RimP
gi|83572808|gb|ABC19360.1| Protein of unknown function DUF150 [Moorella thermoacetica ATCC
39073]
Length = 158
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKD 89
DR ++D E A LDE + IP + LEVSSPG+ER ++ + RF
Sbjct: 41 IDRPEGIGLDDCEQVSRVVSALLDEKD---PIPHSYYLEVSSPGLERPLKKEADFNRFAG 97
Query: 90 RAMYVK 95
R + ++
Sbjct: 98 RKVKLR 103
>gi|16800426|ref|NP_470694.1| hypothetical protein lin1358 [Listeria innocua Clip11262]
gi|422412790|ref|ZP_16489749.1| conserved hypothetical protein [Listeria innocua FSL S4-378]
gi|423100401|ref|ZP_17088108.1| hypothetical protein HMPREF0557_01981 [Listeria innocua ATCC 33091]
gi|34222948|sp|Q92C33.1|RIMP_LISIN RecName: Full=Ribosome maturation factor RimP
gi|16413831|emb|CAC96589.1| lin1358 [Listeria innocua Clip11262]
gi|313619130|gb|EFR90920.1| conserved hypothetical protein [Listeria innocua FSL S4-378]
gi|370793402|gb|EHN61240.1| hypothetical protein HMPREF0557_01981 [Listeria innocua ATCC 33091]
Length = 155
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + + P W ++ D+ G +++ A ++DE++ I +N
Sbjct: 17 DELQLELVDIAFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDESD---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVG-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>gi|398304220|ref|ZP_10507806.1| ribosome maturation protein RimP [Bacillus vallismortis DV1-F-3]
Length = 156
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 30/141 (21%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +E+ +LDEA+ I +N LEVSSPG ER ++ + E+
Sbjct: 40 VFIDSDDGVDIEECAKVSEALSEKLDEAD---PISQNYFLEVSSPGAERPLKKKADFEKS 96
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPL 145
+ +Y+K T P E VF L FD +T +
Sbjct: 97 LGKNVYIK-------TYEPIEGAKVFEGELAEFDGQTVTVE------------------I 131
Query: 146 SKKQREWRLNTTFDSLRLVRL 166
+ K R+ R+N +D + RL
Sbjct: 132 TIKTRKKRINIPYDKIANARL 152
>gi|402303081|ref|ZP_10822179.1| hypothetical protein HMPREF1147_2311 [Selenomonas sp. FOBRC9]
gi|400379311|gb|EJP32155.1| hypothetical protein HMPREF1147_2311 [Selenomonas sp. FOBRC9]
Length = 149
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +ED LD + I + LEVSSPG++RV+R + ER
Sbjct: 40 VYIDKEGGIDIEDCRMLSEHLEEVLDREDF---ISDAYILEVSSPGLDRVLRKARDFERE 96
Query: 88 K----DRAMYVKYVGETVTTGSPSESDGVFRLISFDM 120
D A+Y G+ TG+ + DG ++ D+
Sbjct: 97 HGKRVDVALYAPLDGKKNLTGALTGYDGNVLILDDDV 133
>gi|320530107|ref|ZP_08031177.1| hypothetical protein HMPREF9555_01262 [Selenomonas artemidis F0399]
gi|320137540|gb|EFW29452.1| hypothetical protein HMPREF9555_01262 [Selenomonas artemidis F0399]
Length = 149
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +ED LD + I + LEVSSPG++RV+R + ER
Sbjct: 40 VYIDKEGGIDIEDCRMLSEHLEEVLDREDF---ISDAYILEVSSPGLDRVLRKARDFERE 96
Query: 88 K----DRAMYVKYVGETVTTGSPSESDGVFRLISFDM 120
D A+Y G+ TG+ + DG ++ D+
Sbjct: 97 HGKRVDVALYAPLDGKKNLTGALTGYDGNVLILDDDV 133
>gi|434400155|ref|YP_007134159.1| Ribosome maturation factor rimP [Stanieria cyanosphaera PCC 7437]
gi|428271252|gb|AFZ37193.1| Ribosome maturation factor rimP [Stanieria cyanosphaera PCC 7437]
Length = 153
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 33 SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAM 92
S S++D E A LD EI IP + LE+SSPG+ R + E FK ++
Sbjct: 46 SADTSLDDCERMSLALEATLDTTEI---IPGSYVLEISSPGISRTLTTDREFISFKGFSV 102
Query: 93 YVK 95
VK
Sbjct: 103 IVK 105
>gi|304316866|ref|YP_003852011.1| hypothetical protein Tthe_1413 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433655009|ref|YP_007298717.1| hypothetical protein Thethe_01378 [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|302778368|gb|ADL68927.1| protein of unknown function DUF150 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433293198|gb|AGB19020.1| hypothetical protein Thethe_01378 [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 151
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G S++D + +LDE + I + LEVSSPG++R ++ + ++F
Sbjct: 39 VYIDKEGGVSLDDCQIISEYLSEKLDEVD---PIENSYILEVSSPGIDRPLKTQRDFDKF 95
Query: 88 K 88
K
Sbjct: 96 K 96
>gi|399055573|ref|ZP_10743268.1| hypothetical protein PMI08_04878 [Brevibacillus sp. CF112]
gi|433546012|ref|ZP_20502350.1| hypothetical protein D478_20099 [Brevibacillus agri BAB-2500]
gi|398046782|gb|EJL39366.1| hypothetical protein PMI08_04878 [Brevibacillus sp. CF112]
gi|432182628|gb|ELK40191.1| hypothetical protein D478_20099 [Brevibacillus agri BAB-2500]
Length = 152
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 16/101 (15%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W ++ + +G+ ++D +LDE + IP LEVSSPG ER +R
Sbjct: 35 WFLRVFIDNETGNIDIDDCSLVSEKLSQKLDEVD---PIPTAYFLEVSSPGAERPLR--- 88
Query: 83 ELERFKDRAMYVKYVGETV--TTGSPSESDGVF--RLISFD 119
KD+ + K VG V TT P E +F LIS++
Sbjct: 89 -----KDKD-FTKAVGRHVHITTKEPIEGASLFEGELISYE 123
>gi|160883585|ref|ZP_02064588.1| hypothetical protein BACOVA_01557 [Bacteroides ovatus ATCC 8483]
gi|423291620|ref|ZP_17270467.1| hypothetical protein HMPREF1069_05510 [Bacteroides ovatus
CL02T12C04]
gi|156110998|gb|EDO12743.1| hypothetical protein BACOVA_01557 [Bacteroides ovatus ATCC 8483]
gi|392662743|gb|EIY56299.1| hypothetical protein HMPREF1069_05510 [Bacteroides ovatus
CL02T12C04]
Length = 230
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 33 SGSPSMEDIEAFCTTYRAR------LDEAEI-AKSIPE-NTSLEVSSPGVERVVR-IPLE 83
+P ++ ++AF + Y LD +I AK++P + + + S +E V+ I L+
Sbjct: 62 QNTPFLKKLDAFASDYNLIENELNGLDVVKIFAKNVPSYHKKILLYSAKIENVISDILLK 121
Query: 84 LERFKDRAMYVKYVGETVTTGSPSESDGVFRLIS-------FDMETECCTWGLADVRINR 136
+ F+++ +K++ ET + ++ LIS FD E E C W +++ I +
Sbjct: 122 NKDFEEQKKTLKFLSETPIEYAKNDEKLQQNLISHIKKEKDFDFERELCDWLMSNELIYK 181
Query: 137 EKAGKGRPLSKKQREWRLNTTFDSLRLVR 165
+G P K T DS++L R
Sbjct: 182 FPPYEGIPCCKIGDILLSKNTSDSIKLKR 210
>gi|227488650|ref|ZP_03918966.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091544|gb|EEI26856.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
Length = 180
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 25 TQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAK--SIPENTSLEVSSPGVERVVRIPL 82
T V D P ++ + F T DE E +K S +LEVS+PG++ + P
Sbjct: 37 TVTVIVDSESDPDIDAVGEFSTALSQVFDEKEASKELSFGAGYNLEVSTPGIDEPLTRPY 96
Query: 83 ELERFKDRAMYVKYVGETVTT 103
+ R + RA+ V G+ T
Sbjct: 97 QWARNRGRAVTVTLKGQEPAT 117
>gi|398344770|ref|ZP_10529473.1| hypothetical protein LinasL1_17347 [Leptospira inadai serovar Lyme
str. 10]
gi|398346787|ref|ZP_10531490.1| hypothetical protein Lbro5_06074 [Leptospira broomii str. 5399]
Length = 150
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 45 CTTYRARLDEAEIAKSIPE-NTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTT 103
C +L+E E+ + P+ N +L+VSS G ER + +P +L+RF+ + + Y E
Sbjct: 55 CEQVSRKLNE-ELERIFPDLNYTLKVSSAGAERKLVLPEDLDRFRGIPVRLVYRVE---- 109
Query: 104 GSPSESDGVFRLI 116
G E +G+FR++
Sbjct: 110 GESGEKEGIFRIL 122
>gi|288817342|ref|YP_003431689.1| hypothetical protein HTH_0021 [Hydrogenobacter thermophilus TK-6]
gi|384128112|ref|YP_005510725.1| hypothetical protein [Hydrogenobacter thermophilus TK-6]
gi|288786741|dbj|BAI68488.1| hypothetical protein HTH_0021 [Hydrogenobacter thermophilus TK-6]
gi|308750949|gb|ADO44432.1| protein of unknown function DUF150 [Hydrogenobacter thermophilus
TK-6]
Length = 157
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++ D E A LD +I IP + LEVSSPG+ R + P E F
Sbjct: 42 VILDKDGGITVNDCEEVSKRLSALLDVEDI---IPTSYILEVSSPGLTRELTKPEHYEFF 98
Query: 88 KDRAM 92
K R +
Sbjct: 99 KGRLI 103
>gi|227543253|ref|ZP_03973302.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227181062|gb|EEI62034.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 180
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 25 TQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAK--SIPENTSLEVSSPGVERVVRIPL 82
T V D P ++ + F T DE E +K S +LEVS+PG++ + P
Sbjct: 37 TVTVIVDSESDPDIDAVGEFSTALSQVFDEKEASKELSFGAGYNLEVSTPGIDEPLTRPY 96
Query: 83 ELERFKDRAMYVKYVGETVTT 103
+ R + RA+ V G+ T
Sbjct: 97 QWARNRGRAVSVTLKGQEPAT 117
>gi|184155205|ref|YP_001843545.1| hypothetical protein LAF_0729 [Lactobacillus fermentum IFO 3956]
gi|227514705|ref|ZP_03944754.1| protein of hypothetical function DUF150 [Lactobacillus fermentum
ATCC 14931]
gi|260662295|ref|ZP_05863191.1| UPF0090 protein [Lactobacillus fermentum 28-3-CHN]
gi|259585802|sp|B2GBN3.1|RIMP_LACF3 RecName: Full=Ribosome maturation factor RimP
gi|183226549|dbj|BAG27065.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|227086909|gb|EEI22221.1| protein of hypothetical function DUF150 [Lactobacillus fermentum
ATCC 14931]
gi|260553678|gb|EEX26570.1| UPF0090 protein [Lactobacillus fermentum 28-3-CHN]
Length = 159
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++ED +LD A+ IP+ LEVSSPG ER ++ ++ +R
Sbjct: 41 VYIDKEGGITLEDCALVSDQLSEQLDSAD-PDPIPQAYFLEVSSPGAERPLKKEVDYQRA 99
Query: 88 KDR----AMYVKYVGETVTTG 104
D+ ++Y + G V G
Sbjct: 100 LDQYVNVSLYQQIDGHKVFEG 120
>gi|422415818|ref|ZP_16492775.1| conserved hypothetical protein [Listeria innocua FSL J1-023]
gi|313623921|gb|EFR94029.1| conserved hypothetical protein [Listeria innocua FSL J1-023]
Length = 155
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + + P W ++ D+ G +++ A ++DE++ I +N
Sbjct: 17 DELQLELVDIAFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDESD---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYV----GETVTTGSPSESDGVFRLISFDM 120
LEVSSPG ER ++ + E + ++V G + G+ DG +I+
Sbjct: 73 YFLEVSSPGAERPLKKEQDFENAVGKYVHVTSYEPIDGRKMWEGTLVSYDGTILVITITD 132
Query: 121 ETECCTWGLADVRINREKAGKGR 143
+T T I ++K K R
Sbjct: 133 KTRKIT-----CEIPKDKVAKAR 150
>gi|156373004|ref|XP_001629324.1| predicted protein [Nematostella vectensis]
gi|156216322|gb|EDO37261.1| predicted protein [Nematostella vectensis]
Length = 629
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 41 IEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL----ELERFKDRAMYVKY 96
+ FC ++ R+ E +I +SI ENTS E+ SP E VV+ + +L+ F R +
Sbjct: 242 LNTFCRDFQ-RVLETKITQSISENTSSEIESPIYEEVVQHMMFCQSKLDMFHGRQAVLNS 300
Query: 97 VGETVTTG 104
+G+ + G
Sbjct: 301 IGDYLREG 308
>gi|229918665|ref|YP_002887311.1| hypothetical protein EAT1b_2952 [Exiguobacterium sp. AT1b]
gi|259585773|sp|C4L660.1|RIMP_EXISA RecName: Full=Ribosome maturation factor RimP
gi|229470094|gb|ACQ71866.1| protein of unknown function DUF150 [Exiguobacterium sp. AT1b]
Length = 156
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 21 PLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI 80
P W + V D+ G ++D +L+E + I + L+VSSPG ER ++
Sbjct: 33 PDWFLR-VYIDKPGGVDLDDCVNINEQLSEKLNETD---PIEQAYYLDVSSPGAERPLKK 88
Query: 81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAG 140
P + ER + +Y+K E +G+ L ++D ET + RI K
Sbjct: 89 PSDFERAVGKNVYMKTFA---PIDGAKEFEGI--LTAYDGETVVI-----ETRIKTRKKA 138
Query: 141 KGRPLSKKQREWRLNTTF 158
P+ K + RL TF
Sbjct: 139 VSLPVDKIA-QARLAVTF 155
>gi|334134193|ref|ZP_08507705.1| hypothetical protein HMPREF9413_3020 [Paenibacillus sp. HGF7]
gi|333608275|gb|EGL19577.1| hypothetical protein HMPREF9413_3020 [Paenibacillus sp. HGF7]
Length = 152
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W + V D+ G ++D ++LDE + IP LEVSSPG ER ++ P
Sbjct: 36 WFLR-VFVDKEGGIDIDDCGRISEFLSSKLDEND---PIPTAYFLEVSSPGAERPLKKPE 91
Query: 83 ELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 121
++++ + ++ VTT P ++ F L+SFD E
Sbjct: 92 DIKKAVGKHVF-------VTTYEPIDNSKEFEGELLSFDDE 125
>gi|254457876|ref|ZP_05071303.1| Helicase conserved C-terminal domain protein [Sulfurimonas
gotlandica GD1]
gi|373869055|ref|ZP_09605453.1| protein containing DNA/RNA helicase C-terminal domain [Sulfurimonas
gotlandica GD1]
gi|207085269|gb|EDZ62554.1| Helicase conserved C-terminal domain protein [Sulfurimonas
gotlandica GD1]
gi|372471156|gb|EHP31360.1| protein containing DNA/RNA helicase C-terminal domain [Sulfurimonas
gotlandica GD1]
Length = 212
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 66 SLEVSSPGVERVVR--IPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETE 123
SLE+++ ++R+V +P++ E + R YV VGE ++ +P E +G+ ++I F M+ E
Sbjct: 110 SLELTN--IQRIVNYDLPIQQEEYFIRLAYVDEVGEAISFVAPDE-EGMLQIIEFKMKLE 166
Query: 124 CCTWGLA 130
+A
Sbjct: 167 IPEEEIA 173
>gi|403234763|ref|ZP_10913349.1| ribosome maturation protein RimP [Bacillus sp. 10403023]
Length = 157
Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +ED +LDE + IP N LEVSSPG ER ++ + E+
Sbjct: 40 VFIDSEKGVDIEDCGNVSEKLSEKLDEVD---PIPYNYFLEVSSPGAERPLKKMSDYEKA 96
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFD 119
+ +YVK T P + + VF L SFD
Sbjct: 97 IGKQVYVK-------TYEPIDGEKVFEGELASFD 123
>gi|433445992|ref|ZP_20410123.1| ribosome maturation factor RimP [Anoxybacillus flavithermus
TNO-09.006]
gi|432000737|gb|ELK21629.1| ribosome maturation factor RimP [Anoxybacillus flavithermus
TNO-09.006]
Length = 156
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 35 SPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
SP+ DI+ C RL E + IP N LEVSSPG ER ++ + ER + +Y
Sbjct: 43 SPTGVDIDQ-CGVVSERLSEKLDEIDPIPHNYFLEVSSPGAERPLKKMKDFERAVGKNVY 101
Query: 94 VK 95
VK
Sbjct: 102 VK 103
>gi|319649524|ref|ZP_08003680.1| hypothetical protein HMPREF1013_00284 [Bacillus sp. 2_A_57_CT2]
gi|317398686|gb|EFV79368.1| hypothetical protein HMPREF1013_00284 [Bacillus sp. 2_A_57_CT2]
Length = 155
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 43/88 (48%), Gaps = 15/88 (17%)
Query: 40 DIEAFCTTYRARLDEAEIAKS-IPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVG 98
DIE C T RL E A+ IP N LEVSSPG ER PL K + +VK VG
Sbjct: 48 DIEE-CGTVSERLSEKLDAEDPIPYNYFLEVSSPGAER----PL-----KKDSDFVKAVG 97
Query: 99 ETV--TTGSPSESDGVFR--LISFDMET 122
+ V T P + + F L FD ET
Sbjct: 98 KNVFIKTYEPIDGEKTFEGVLTQFDGET 125
>gi|373857328|ref|ZP_09600070.1| protein of unknown function DUF150 [Bacillus sp. 1NLA3E]
gi|372452978|gb|EHP26447.1| protein of unknown function DUF150 [Bacillus sp. 1NLA3E]
Length = 156
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ +ED +LDE + IP N LEVSSPG ER ++ + E+
Sbjct: 39 VYIDKEAGVDIEDCGIVSEKLSEKLDEVD---PIPHNYFLEVSSPGAERPLKKDKDFEKA 95
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
+ +++K T P + + F L FD ET
Sbjct: 96 IGKNVFIK-------TYEPIDGEKSFEGILTQFDGET 125
>gi|317125352|ref|YP_004099464.1| hypothetical protein Intca_2228 [Intrasporangium calvum DSM 43043]
gi|315589440|gb|ADU48737.1| protein of unknown function DUF150 [Intrasporangium calvum DSM
43043]
Length = 197
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 37 SMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKY 96
S++DI RLD++++ S+P LEVSSPGV R +R + R R + V +
Sbjct: 60 SLDDIADATRAVSTRLDDSDVMGSMP--YVLEVSSPGVGRPLRSRHDFRRQVGRLVDVAH 117
Query: 97 VGETVT 102
G +VT
Sbjct: 118 EGGSVT 123
>gi|256544695|ref|ZP_05472067.1| hypothetical protein HMPREF0078_0324 [Anaerococcus vaginalis ATCC
51170]
gi|256399584|gb|EEU13189.1| hypothetical protein HMPREF0078_0324 [Anaerococcus vaginalis ATCC
51170]
Length = 152
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 32 RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
+ G +++D E RLDE ++ KS LEVSSP + R ++ +LER KD
Sbjct: 48 KDGGITIDDCEKTSNFLSERLDEIDLIKSF---YYLEVSSPDLSRPLKTDRDLERNKDEL 104
Query: 92 MYVK 95
+ +K
Sbjct: 105 LEIK 108
>gi|16803361|ref|NP_464846.1| hypothetical protein lmo1321 [Listeria monocytogenes EGD-e]
gi|254828681|ref|ZP_05233368.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254911995|ref|ZP_05262007.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936322|ref|ZP_05268019.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|284801706|ref|YP_003413571.1| hypothetical protein LM5578_1460 [Listeria monocytogenes 08-5578]
gi|284994848|ref|YP_003416616.1| hypothetical protein LM5923_1413 [Listeria monocytogenes 08-5923]
gi|315282174|ref|ZP_07870639.1| conserved hypothetical protein [Listeria marthii FSL S4-120]
gi|386043632|ref|YP_005962437.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386046973|ref|YP_005965305.1| hypothetical protein [Listeria monocytogenes J0161]
gi|386050297|ref|YP_005968288.1| hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|386053574|ref|YP_005971132.1| hypothetical protein [Listeria monocytogenes Finland 1998]
gi|404283812|ref|YP_006684709.1| hypothetical protein LMOSLCC2372_1382 [Listeria monocytogenes
SLCC2372]
gi|404410619|ref|YP_006696207.1| hypothetical protein LMOSLCC5850_1380 [Listeria monocytogenes
SLCC5850]
gi|404413397|ref|YP_006698984.1| hypothetical protein LMOSLCC7179_1291 [Listeria monocytogenes
SLCC7179]
gi|405758368|ref|YP_006687644.1| hypothetical protein LMOSLCC2479_1381 [Listeria monocytogenes
SLCC2479]
gi|34222940|sp|Q8Y7G0.1|RIMP_LISMO RecName: Full=Ribosome maturation factor RimP
gi|16410737|emb|CAC99399.1| lmo1321 [Listeria monocytogenes EGD-e]
gi|258601085|gb|EEW14410.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258608912|gb|EEW21520.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|284057268|gb|ADB68209.1| hypothetical protein LM5578_1460 [Listeria monocytogenes 08-5578]
gi|284060315|gb|ADB71254.1| hypothetical protein LM5923_1413 [Listeria monocytogenes 08-5923]
gi|293589959|gb|EFF98293.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|313614178|gb|EFR87857.1| conserved hypothetical protein [Listeria marthii FSL S4-120]
gi|345533964|gb|AEO03405.1| hypothetical protein LMOG_00389 [Listeria monocytogenes J0161]
gi|345536866|gb|AEO06306.1| hypothetical protein LMRG_00771 [Listeria monocytogenes 10403S]
gi|346424143|gb|AEO25668.1| UPF0090 protein [Listeria monocytogenes FSL R2-561]
gi|346646225|gb|AEO38850.1| UPF0090 protein [Listeria monocytogenes Finland 1998]
gi|404230445|emb|CBY51849.1| hypothetical protein LMOSLCC5850_1380 [Listeria monocytogenes
SLCC5850]
gi|404233314|emb|CBY54717.1| hypothetical protein LMOSLCC2372_1382 [Listeria monocytogenes
SLCC2372]
gi|404236250|emb|CBY57652.1| hypothetical protein LMOSLCC2479_1381 [Listeria monocytogenes
SLCC2479]
gi|404239096|emb|CBY60497.1| hypothetical protein LMOSLCC7179_1291 [Listeria monocytogenes
SLCC7179]
gi|441470993|emb|CCQ20748.1| Ribosome maturation factor RimP [Listeria monocytogenes]
gi|441474120|emb|CCQ23874.1| Ribosome maturation factor RimP [Listeria monocytogenes N53-1]
Length = 155
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + + P W ++ D+ G +++ A ++DE + I +N
Sbjct: 17 DELQLELVDIAFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDEND---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVS-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>gi|312134895|ref|YP_004002233.1| hypothetical protein Calow_0865 [Caldicellulosiruptor owensensis
OL]
gi|311774946|gb|ADQ04433.1| protein of unknown function DUF150 [Caldicellulosiruptor owensensis
OL]
Length = 151
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +++D + RLD I IP + LEVSSPGV+R + + R
Sbjct: 39 VYIDKPGGITIDDCQLVSEELSERLD---IVDPIPFSYYLEVSSPGVDRPLVTDRDFIRN 95
Query: 88 KDRAMYV----KYVGETVTTGSPSESDGVFRLISFDME 121
K R + V ++ T TG E + F ++ D E
Sbjct: 96 KGRLVEVFLSQPFLNRTKFTGELVEKNDKFLVLIMDKE 133
>gi|220931625|ref|YP_002508533.1| hypothetical protein Hore_07810 [Halothermothrix orenii H 168]
gi|259585780|sp|B8CW69.1|RIMP_HALOH RecName: Full=Ribosome maturation factor RimP
gi|219992935|gb|ACL69538.1| uncharacterized protein conserved in bacteria [Halothermothrix
orenii H 168]
Length = 159
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
G +++ E +LDE + I E+ LEVSSPG+ER ++ + +RF + Y
Sbjct: 46 GEVTLDHCENVSKNLDEKLDEVD---PIQESYILEVSSPGIERPLKKKEDFDRFSGKLAY 102
Query: 94 VK 95
+K
Sbjct: 103 IK 104
>gi|336395308|ref|ZP_08576707.1| hypothetical protein LfarK3_06284 [Lactobacillus farciminis KCTC
3681]
Length = 155
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G S++D Y +LDE + I LEVSSPG ER ++ L +
Sbjct: 39 VYADKKGGISIDDCAVISEEYGEKLDELD---PIEPAYYLEVSSPGAERPLKNDESLTNY 95
Query: 88 KDR----AMYVKYVGE-----TVTTGSPSESDGVFRLISFDMETECCTWGLADVRINRE 137
D ++Y K GE T+T + +E + ++ + + E +A +R+ E
Sbjct: 96 VDDYVHVSLYQKVNGEKAFEGTLTEVTDTEITLIVKVKNLKKQVEISRKNIAKIRLAIE 154
>gi|282857787|ref|ZP_06266996.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
gi|282584457|gb|EFB89816.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
Length = 165
Score = 35.4 bits (80), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V DR G ++D E A LD A A + ++ LEVSSPG+ER + + RF
Sbjct: 37 VYIDRDGGVGLDDCERSAKEIGALLDTA--ADAFEDHYLLEVSSPGLERPLFKAEDYARF 94
Query: 88 KDRAMYVKYVG 98
R + V+ G
Sbjct: 95 AGRPVNVRLKG 105
>gi|46907547|ref|YP_013936.1| hypothetical protein LMOf2365_1338 [Listeria monocytogenes serotype
4b str. F2365]
gi|47093945|ref|ZP_00231682.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|226223922|ref|YP_002758029.1| hypothetical protein Lm4b_01329 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254824620|ref|ZP_05229621.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254852629|ref|ZP_05241977.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254932364|ref|ZP_05265723.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|254993852|ref|ZP_05276042.1| hypothetical protein LmonocytoFSL_13365 [Listeria monocytogenes FSL
J2-064]
gi|255521786|ref|ZP_05389023.1| hypothetical protein LmonocFSL_11262 [Listeria monocytogenes FSL
J1-175]
gi|300765439|ref|ZP_07075421.1| hypothetical protein LMHG_11499 [Listeria monocytogenes FSL N1-017]
gi|386732059|ref|YP_006205555.1| ribosome maturation protein RimP [Listeria monocytogenes 07PF0776]
gi|404280875|ref|YP_006681773.1| hypothetical protein LMOSLCC2755_1323 [Listeria monocytogenes
SLCC2755]
gi|404286740|ref|YP_006693326.1| hypothetical protein LMOSLCC2482_1373 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405749663|ref|YP_006673129.1| hypothetical protein LMOATCC19117_1328 [Listeria monocytogenes ATCC
19117]
gi|405752538|ref|YP_006676003.1| hypothetical protein LMOSLCC2378_1334 [Listeria monocytogenes
SLCC2378]
gi|405755450|ref|YP_006678914.1| hypothetical protein LMOSLCC2540_1371 [Listeria monocytogenes
SLCC2540]
gi|406704092|ref|YP_006754446.1| hypothetical protein LMOL312_1317 [Listeria monocytogenes L312]
gi|417313774|ref|ZP_12100481.1| ribosome maturation protein RimP [Listeria monocytogenes J1816]
gi|417317473|ref|ZP_12104090.1| ribosome maturation protein RimP [Listeria monocytogenes J1-220]
gi|424714195|ref|YP_007014910.1| Ribosome maturation factor RimP [Listeria monocytogenes serotype 4b
str. LL195]
gi|424823084|ref|ZP_18248097.1| Ribosome maturation factor rimP [Listeria monocytogenes str. Scott
A]
gi|51316675|sp|Q720A1.1|RIMP_LISMF RecName: Full=Ribosome maturation factor RimP
gi|259585784|sp|C1L2M7.1|RIMP_LISMC RecName: Full=Ribosome maturation factor RimP
gi|46880815|gb|AAT04113.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47017683|gb|EAL08479.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|225876384|emb|CAS05093.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258605944|gb|EEW18552.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293583920|gb|EFF95952.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293593858|gb|EFG01619.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300513876|gb|EFK40941.1| hypothetical protein LMHG_11499 [Listeria monocytogenes FSL N1-017]
gi|328468604|gb|EGF39604.1| ribosome maturation protein RimP [Listeria monocytogenes J1816]
gi|328475043|gb|EGF45831.1| ribosome maturation protein RimP [Listeria monocytogenes J1-220]
gi|332311764|gb|EGJ24859.1| Ribosome maturation factor rimP [Listeria monocytogenes str. Scott
A]
gi|384390817|gb|AFH79887.1| ribosome maturation protein RimP [Listeria monocytogenes 07PF0776]
gi|404218863|emb|CBY70227.1| hypothetical protein LMOATCC19117_1328 [Listeria monocytogenes ATCC
19117]
gi|404221738|emb|CBY73101.1| hypothetical protein LMOSLCC2378_1334 [Listeria monocytogenes
SLCC2378]
gi|404224650|emb|CBY76012.1| hypothetical protein LMOSLCC2540_1371 [Listeria monocytogenes
SLCC2540]
gi|404227510|emb|CBY48915.1| hypothetical protein LMOSLCC2755_1323 [Listeria monocytogenes
SLCC2755]
gi|404245669|emb|CBY03894.1| hypothetical protein LMOSLCC2482_1373 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406361122|emb|CBY67395.1| hypothetical protein LMOL312_1317 [Listeria monocytogenes L312]
gi|424013379|emb|CCO63919.1| Ribosome maturation factor RimP [Listeria monocytogenes serotype 4b
str. LL195]
Length = 155
Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + + P W ++ D+ G +++ A ++DE + I +N
Sbjct: 17 DELQLELVDIAFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDEND---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVS-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>gi|347750459|ref|YP_004858024.1| hypothetical protein Bcoa_0018 [Bacillus coagulans 36D1]
gi|347582977|gb|AEO99243.1| protein of unknown function DUF150 [Bacillus coagulans 36D1]
Length = 155
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W + V D+ +E+ +LDE + IP N LEVSSPG ER ++
Sbjct: 35 WFLR-VYIDKENGVDIEECGLVSERLGEKLDEVD---PIPHNYFLEVSSPGAERPLKKAR 90
Query: 83 ELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISF 118
+ ER R + VK T P + + F +LI+F
Sbjct: 91 DFERAVGRTVLVK-------TYEPLDGEKTFQGKLIAF 121
>gi|389573213|ref|ZP_10163288.1| protein YlxS (P15A) [Bacillus sp. M 2-6]
gi|388426910|gb|EIL84720.1| protein YlxS (P15A) [Bacillus sp. M 2-6]
Length = 157
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +E+ +LDEA+ I +N LEVSSPG ER PL
Sbjct: 40 VFIDSDKGVDIEECAKVSEALSEKLDEAD---PISQNYFLEVSSPGAER----PL----- 87
Query: 88 KDRAMYVKYVGETV--TTGSPSESDGVF--RLISFDMETECCTWGL----ADVRINREKA 139
K +A + K +G+ V T P + + F L SFD E T + ++ I EK
Sbjct: 88 KKKADFEKALGKNVFMKTYEPIDGEKAFEGELTSFDGEIATVTVKIKTRKKEINIPYEKI 147
Query: 140 GKGR 143
R
Sbjct: 148 ANAR 151
>gi|157692342|ref|YP_001486804.1| hypothetical protein BPUM_1562 [Bacillus pumilus SAFR-032]
gi|194014514|ref|ZP_03053131.1| protein YlxS (P15A) [Bacillus pumilus ATCC 7061]
gi|166979791|sp|A8FDC7.1|RIMP_BACP2 RecName: Full=Ribosome maturation factor RimP
gi|157681100|gb|ABV62244.1| hypothetical protein BPUM_1562 [Bacillus pumilus SAFR-032]
gi|194013540|gb|EDW23105.1| protein YlxS (P15A) [Bacillus pumilus ATCC 7061]
Length = 157
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +E+ +LDEA+ I +N LEVSSPG ER PL
Sbjct: 40 VFIDSDKGVDIEECAKVSEALSEKLDEAD---PISQNYFLEVSSPGAER----PL----- 87
Query: 88 KDRAMYVKYVGETV--TTGSPSESDGVF--RLISFDMETECCTWGL----ADVRINREKA 139
K +A + K +G+ V T P + + F L SFD E T + ++ I EK
Sbjct: 88 KKKADFEKALGKNVFMKTYEPIDGEKAFEGELTSFDGEIATVTVKIKTRKKEINIPYEKI 147
Query: 140 GKGR 143
R
Sbjct: 148 ANAR 151
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,682,247,405
Number of Sequences: 23463169
Number of extensions: 102390712
Number of successful extensions: 208737
Number of sequences better than 100.0: 244
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 208614
Number of HSP's gapped (non-prelim): 247
length of query: 170
length of database: 8,064,228,071
effective HSP length: 130
effective length of query: 40
effective length of database: 9,308,983,397
effective search space: 372359335880
effective search space used: 372359335880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)