BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030849
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2IPZ0|RIMP_ANADE Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=rimP PE=3 SV=1
Length = 171
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D++G ++D +A T LD +A I LEVSSPG++R +R P + +R+
Sbjct: 44 VFIDKAGGVGIDDCQAVSKTVEPILD---VADFIEPAYDLEVSSPGLDRPLRKPRDFDRY 100
Query: 88 KDRAMYVKYVGETVTT--GSPS 107
+ ++VK G T GSP+
Sbjct: 101 AGQRVHVKAYGPVAGTAPGSPA 122
>sp|B4UHF7|RIMP_ANASK Ribosome maturation factor RimP OS=Anaeromyxobacter sp. (strain K)
GN=rimP PE=3 SV=1
Length = 171
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D++G ++D +A T LD A++ I LEVSSPG++R +R P + +R+
Sbjct: 44 VFIDKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPRDFDRY 100
Query: 88 KDRAMYVKYVGETVTT--GSPS 107
+ ++VK G T G+P+
Sbjct: 101 AGQRVHVKAYGPVAGTAPGAPA 122
>sp|B8JFY3|RIMP_ANAD2 Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=rimP PE=3 SV=1
Length = 171
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D++G ++D +A T LD A++ I LEVSSPG++R +R P + +R+
Sbjct: 44 VFIDKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPGDFDRY 100
Query: 88 KDRAMYVKYVGETVTT--GSPS 107
+ ++VK G T G+P+
Sbjct: 101 AGQRVHVKAYGPVAGTAPGAPA 122
>sp|A7H9F0|RIMP_ANADF Ribosome maturation factor RimP OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=rimP PE=3 SV=1
Length = 171
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W +L D+ G +ED +A LD + I LEVSSPG++R +R P
Sbjct: 40 WTLRLF-VDKPGGVGIEDCQAVSRLVDPILD---VEDFIEPAYDLEVSSPGLDRPLRKPA 95
Query: 83 ELERFKDRAMYVKYVGETVTT--GSPSESDGVFRLISF 118
+ +R+ + +VK G T GSP+ + L+ +
Sbjct: 96 DFDRYAGQRAHVKAYGPVAGTAPGSPARKNWTGVLVGY 133
>sp|Q1DAM9|RIMP_MYXXD Ribosome maturation factor RimP OS=Myxococcus xanthus (strain DK
1622) GN=rimP PE=3 SV=1
Length = 161
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIP 81
W+ +L G +++ CT +D + ++ IP +LEVSSPGV+R +R P
Sbjct: 41 WVLRLFIDKPGGRVGLDE----CTQVSRAVDPSLDVEDFIPHEYNLEVSSPGVDRPLRKP 96
Query: 82 LELERFKDRAMYVKYVG 98
ER K + + VK G
Sbjct: 97 THFERVKGQQVKVKTFG 113
>sp|A8LQ53|RIMP_DINSH Ribosome maturation factor RimP OS=Dinoroseobacter shibae (strain
DFL 12) GN=rimP PE=3 SV=1
Length = 196
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 12 RNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSS 71
R RV++ K P Q++A G ++D T A LD + I +N +LEVSS
Sbjct: 31 RLRVMSGKSPTL--QIMAEKPEGGIEVDDCARISTEVSATLD---VEDPIEDNYTLEVSS 85
Query: 72 PGVERVVRIPLELERFKDRAMYVKYVGETVTT 103
PG++R L R KD +V Y + TT
Sbjct: 86 PGIDR------PLTRLKDFDTWVGYEAKIETT 111
>sp|A4J5X6|RIMP_DESRM Ribosome maturation factor RimP OS=Desulfotomaculum reducens
(strain MI-1) GN=rimP PE=3 SV=1
Length = 153
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G ++D + LDE + +P+ LEVSSPG+ER ++ P + E+F
Sbjct: 41 IFIDKPGGIELDDCQGVSEKIDTLLDEID---PVPQAYFLEVSSPGIERPLKKPQDFEKF 97
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 121
+ +TT +P F +L+ ++ E
Sbjct: 98 NGHLV-------NITTFAPINGSKNFIGKLLDYNEE 126
>sp|A6LMV9|RIMP_THEM4 Ribosome maturation factor RimP OS=Thermosipho melanesiensis
(strain BI429 / DSM 12029) GN=rimP PE=3 SV=1
Length = 147
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 18 NKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV 77
NK W +++ + S +D E LD+ I IP L VSSPG+ R
Sbjct: 30 NKSGRWFLEIIIDNPYDYISTKDCENVSRKLEFELDKINI---IPNKYYLTVSSPGLNRP 86
Query: 78 VRIPLELERFKDRA--------MYVKYVGETVTTGSPSESDGVFRLISFDME 121
+R + ERF + Y+ Y+ V E+DG + I F E
Sbjct: 87 LRNVKDFERFTGKKAKIKTRENTYIGYIKNVVDNIITFETDG--KFIEFKFE 136
>sp|B0SQH2|RIMP_LEPBP Ribosome maturation factor RimP OS=Leptospira biflexa serovar
Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rimP
PE=3 SV=1
Length = 162
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 88
D++GS S+ED C T RL E + +L+VSS G ERV+R+P +L RF+
Sbjct: 44 TDKTGSASLED----CETVSRRLKEELDQWGEEFDFTLQVSSAGAERVLRLPEDLIRFQ 98
>sp|B0SH16|RIMP_LEPBA Ribosome maturation factor RimP OS=Leptospira biflexa serovar
Patoc (strain Patoc 1 / Ames) GN=rimP PE=3 SV=1
Length = 162
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 88
D++GS S+ED C T RL E + +L+VSS G ERV+R+P +L RF+
Sbjct: 44 TDKTGSASLED----CETVSRRLKEELDQWGEEFDFTLQVSSAGAERVLRLPEDLIRFQ 98
>sp|B7IDT7|RIMP_THEAB Ribosome maturation factor RimP OS=Thermosipho africanus (strain
TCF52B) GN=rimP PE=3 SV=1
Length = 148
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 18 NKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV 77
NK W ++V + S +D E +LD+ +I IP+ L VSSPG++R
Sbjct: 30 NKSGKWFLEIVIDNPLDYVSTKDCENISREVEFQLDKLDI---IPQRYYLTVSSPGLDRP 86
Query: 78 VRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRL 115
+R + +RF + + +K ET+ D V L
Sbjct: 87 LRSIDDFKRFINNKVKIKLENETIIGYIKDVKDSVIFL 124
>sp|B9K861|RIMP_THENN Ribosome maturation factor RimP OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=rimP PE=3 SV=1
Length = 150
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ ++V + G S+ D E F LD ++ I + +LEVSSPG++R +R P
Sbjct: 37 WVLRVVIDNPVGYVSVRDCELFSRELERFLDREDL---IEHSYTLEVSSPGLDRPLRGPK 93
Query: 83 ELERFKDR-AMYVKYVGETVTTGSPSESDGV 112
+ +RF + A + G+T S DG+
Sbjct: 94 DYQRFTGKLAKIITKDGKTFIGRIESFVDGI 124
>sp|Q3AB94|RIMP_CARHZ Ribosome maturation factor RimP OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=rimP PE=3
SV=1
Length = 154
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ ++D + F LDE + IP++ LEVSSPG+ER ++ + E+F
Sbjct: 42 IYIDKDEGVDLDDCQNFSERIGVILDEED---PIPQSYYLEVSSPGIERPLKKLADFEKF 98
Query: 88 KDRAMYVK 95
R +K
Sbjct: 99 AGREAQIK 106
>sp|B1I359|RIMP_DESAP Ribosome maturation factor RimP OS=Desulforudis audaxviator (strain
MP104C) GN=rimP PE=3 SV=1
Length = 154
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +++D EA LD+ + IP + LEVSSPG+ER ++ + RF
Sbjct: 41 VFLDKPGGINLDDCEAVSRELDRALDDVDF---IPHSYVLEVSSPGLERPLKRAEDYVRF 97
Query: 88 KDRAMYV 94
K R + +
Sbjct: 98 KGRLVQI 104
>sp|C5D9C5|RIMP_GEOSW Ribosome maturation factor RimP OS=Geobacillus sp. (strain WCH70)
GN=rimP PE=3 SV=1
Length = 157
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 51 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESD 110
+LDE + IP N LEVSSPG ER ++ P + + + +Y+K T P E +
Sbjct: 63 KLDEVD---PIPHNYFLEVSSPGAERPLKKPKDFTKAIGKNVYIK-------TYEPIEGE 112
Query: 111 GVF--RLISFDMETECCT 126
F LI FD T T
Sbjct: 113 KEFEGELIGFDGTTVSVT 130
>sp|Q5LWL1|RIMP_RUEPO Ribosome maturation factor RimP OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=rimP PE=3 SV=1
Length = 208
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 26 QLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELE 85
Q++A G ++D A A LD + I + +LEVSSPG++R L
Sbjct: 44 QIMADKPDGGIEVDDCAAISNAVSATLD---VEDPILDAYTLEVSSPGIDR------PLT 94
Query: 86 RFKDRAMYVKYVGETVTT----------GSPSESDGVFRLISFDMETECCTWGL 129
R KD M+ Y + TT G + +G LI+ D E T GL
Sbjct: 95 RLKDFEMFEGYEAKIETTEMIDGRRRFRGELAGIEGNEVLINLDQNGETVTIGL 148
>sp|A6TRL1|RIMP_ALKMQ Ribosome maturation factor RimP OS=Alkaliphilus metalliredigens
(strain QYMF) GN=rimP PE=3 SV=1
Length = 152
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +++D + +LDEA+ I EN LEVSSPG++R ++ ++ +F
Sbjct: 39 VYIDKPGGITLDDCQKVSEGLSKKLDEAD---PIVENYFLEVSSPGLDRPLKREVDFLKF 95
Query: 88 KDRAMYVK 95
K + +K
Sbjct: 96 KGEMIELK 103
>sp|A0Q0R0|RIMP_CLONN Ribosome maturation factor RimP OS=Clostridium novyi (strain NT)
GN=rimP PE=3 SV=1
Length = 154
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D S ++ED E LDE + I ++ LEVSSPG+ERV+ L ++
Sbjct: 42 IYIDSSKGINLEDCEKVSRKVSDILDEKD---PISDSYYLEVSSPGIERVLYTEEHLHKY 98
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGK 141
+ + VK + GS E G LISF+ +T + I RE+ K
Sbjct: 99 TNNQIIVKLA--KLFEGS-REHQG--NLISFNDDTVTIEKENESINIPRERIKK 147
>sp|B8DG06|RIMP_LISMH Ribosome maturation factor RimP OS=Listeria monocytogenes serotype
4a (strain HCC23) GN=rimP PE=3 SV=1
Length = 155
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + V + P W ++ D+ G +++ A ++DE + I +N
Sbjct: 17 DELQLELVDIVFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDEND---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVS-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>sp|B1LAP5|RIMP_THESQ Ribosome maturation factor RimP OS=Thermotoga sp. (strain RQ2)
GN=rimP PE=3 SV=1
Length = 150
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ +++ + G S+ D E F LD ++ I + +LEVSSPG++R +R P
Sbjct: 37 WILRIIIDNPMGYVSVRDCELFSREMERFLDREDL---IEHSYTLEVSSPGLDRPLRGPR 93
Query: 83 ELERF---------KDRAMYVKYVGETVTTGSPSESDG 111
+ RF KD ++ + E+ G+ + SDG
Sbjct: 94 DYVRFTGKLAKIVTKDGKTFIGRI-ESFVDGTITISDG 130
>sp|A5GF83|RIMP_GEOUR Ribosome maturation factor RimP OS=Geobacter uraniireducens (strain
Rf4) GN=rimP PE=3 SV=1
Length = 159
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERFK 88
D+ G +++D C + L E ++ I E+ SLEVSSPG++R ++ + +RFK
Sbjct: 43 VDKEGGVNLDD----CASVSRELSEVLDVEDVISEHYSLEVSSPGIDRPLKKVEDFQRFK 98
Query: 89 DRAMYVK 95
R + ++
Sbjct: 99 GRLVKIR 105
>sp|A9G896|RIMP_SORC5 Ribosome maturation factor RimP OS=Sorangium cellulosum (strain So
ce56) GN=rimP PE=3 SV=1
Length = 208
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 29 ACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 88
A D G ++ED + LD ++ IP + +LEVSSPG++R +R E RF
Sbjct: 52 ADDAGGGVTLEDCADVSRDVSSVLDVEDL---IPNHYNLEVSSPGLDRRLRTAAEFARFL 108
Query: 89 DRAMYVKYV 97
R VK
Sbjct: 109 GRTAKVKLA 117
>sp|Q67P90|RIMP_SYMTH Ribosome maturation factor RimP OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=rimP PE=3 SV=1
Length = 160
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G +D EA A+LDE I + P + EVSSPG++R PL+ E
Sbjct: 43 VYIDKEGGVGFDDCEALSRVVDAQLDE--ILPNPPYDF-FEVSSPGLDR----PLKRE-- 93
Query: 88 KDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN---REKAGKGRP 144
A + +YVG V + + DG SF E + GL D R+ E G+G+
Sbjct: 94 ---ADFARYVGHKVVVTTYAPVDG---QKSFVGELQ----GLVDGRVTLTLTEGKGRGQT 143
Query: 145 LS---KKQREWRLNTTF 158
++ K+ RL F
Sbjct: 144 IALDRKQVASARLYVEF 160
>sp|Q2RJM9|RIMP_MOOTA Ribosome maturation factor RimP OS=Moorella thermoacetica (strain
ATCC 39073) GN=rimP PE=3 SV=1
Length = 158
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKD 89
DR ++D E A LDE + IP + LEVSSPG+ER ++ + RF
Sbjct: 41 IDRPEGIGLDDCEQVSRVVSALLDEKD---PIPHSYYLEVSSPGLERPLKKEADFNRFAG 97
Query: 90 RAMYVK 95
R + ++
Sbjct: 98 RKVKLR 103
>sp|Q92C33|RIMP_LISIN Ribosome maturation factor RimP OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=rimP PE=3 SV=1
Length = 155
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + + P W ++ D+ G +++ A ++DE++ I +N
Sbjct: 17 DELQLELVDIAFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDESD---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVG-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>sp|B2GBN3|RIMP_LACF3 Ribosome maturation factor RimP OS=Lactobacillus fermentum (strain
NBRC 3956 / LMG 18251) GN=rimP PE=3 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D+ G ++ED +LD A+ IP+ LEVSSPG ER ++ ++ +R
Sbjct: 41 VYIDKEGGITLEDCALVSDQLSEQLDSAD-PDPIPQAYFLEVSSPGAERPLKKEVDYQRA 99
Query: 88 KDR----AMYVKYVGETVTTG 104
D+ ++Y + G V G
Sbjct: 100 LDQYVNVSLYQQIDGHKVFEG 120
>sp|C4L660|RIMP_EXISA Ribosome maturation factor RimP OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=rimP PE=3 SV=1
Length = 156
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 21 PLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI 80
P W + V D+ G ++D +L+E + I + L+VSSPG ER ++
Sbjct: 33 PDWFLR-VYIDKPGGVDLDDCVNINEQLSEKLNETD---PIEQAYYLDVSSPGAERPLKK 88
Query: 81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAG 140
P + ER + +Y+K E +G+ L ++D ET + RI K
Sbjct: 89 PSDFERAVGKNVYMKTFA---PIDGAKEFEGI--LTAYDGETVVI-----ETRIKTRKKA 138
Query: 141 KGRPLSKKQREWRLNTTF 158
P+ K + RL TF
Sbjct: 139 VSLPVDKIA-QARLAVTF 155
>sp|B2A393|RIMP_NATTJ Ribosome maturation factor RimP OS=Natranaerobius thermophilus
(strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rimP
PE=3 SV=1
Length = 154
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D ++D E + LDE + IP + LEVSSPG ER PL
Sbjct: 41 VYIDHGKGIGLDDCELVSNSLDQLLDEHD---PIPHSYVLEVSSPGAER----PL----- 88
Query: 88 KDRAMYVKYVGETVTTGSPSESDG--VFRLISFDMETECC---TWGLADVRINREKAGKG 142
K + +V + G+ V + + DG F+ +E E T+ +V+I +K K
Sbjct: 89 KKKKDFVNFAGKKVQIKTYVKLDGRKNFKGKLLGLEDEHVVLETFNSGEVKIPLDKIAKA 148
Query: 143 RPL 145
L
Sbjct: 149 NLL 151
>sp|B0K1E0|RIMP_THEPX Ribosome maturation factor RimP OS=Thermoanaerobacter sp. (strain
X514) GN=rimP PE=3 SV=1
Length = 151
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELER 86
V D+ G +++D + RLDE + I + LEVSSPG++R ++ P + ER
Sbjct: 39 VYIDKEGGITLDDCQLVSEYLSDRLDEVD---PIEHSYILEVSSPGLDRPLKKPRDFER 94
>sp|B0K9Q4|RIMP_THEP3 Ribosome maturation factor RimP OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=rimP PE=3
SV=1
Length = 151
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELER 86
V D+ G +++D + RLDE + I + LEVSSPG++R ++ P + ER
Sbjct: 39 VYIDKEGGITLDDCQLVSEYLSDRLDEVD---PIEHSYILEVSSPGLDRPLKKPRDFER 94
>sp|B1GZN4|RIMP_UNCTG Ribosome maturation factor RimP OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=rimP PE=3 SV=1
Length = 151
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ ++ D+ ++ D E + A LDE++I K ++ LE+SSPG +RV++
Sbjct: 34 WVARIF-IDKDSGVTISDCENISCIFGAFLDESDILK---DSYVLEISSPGFKRVLKSEK 89
Query: 83 ELERF 87
RF
Sbjct: 90 SFRRF 94
>sp|Q8Y7G0|RIMP_LISMO Ribosome maturation factor RimP OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=rimP PE=3 SV=1
Length = 155
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + + P W ++ D+ G +++ A ++DE + I +N
Sbjct: 17 DELQLELVDIAFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDEND---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVS-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>sp|B8CW69|RIMP_HALOH Ribosome maturation factor RimP OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=rimP PE=3 SV=1
Length = 159
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
G +++ E +LDE + I E+ LEVSSPG+ER ++ + +RF + Y
Sbjct: 46 GEVTLDHCENVSKNLDEKLDEVD---PIQESYILEVSSPGIERPLKKKEDFDRFSGKLAY 102
Query: 94 VK 95
+K
Sbjct: 103 IK 104
>sp|Q720A1|RIMP_LISMF Ribosome maturation factor RimP OS=Listeria monocytogenes serotype
4b (strain F2365) GN=rimP PE=3 SV=1
Length = 155
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + + P W ++ D+ G +++ A ++DE + I +N
Sbjct: 17 DELQLELVDIAFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDEND---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVS-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>sp|C1L2M7|RIMP_LISMC Ribosome maturation factor RimP OS=Listeria monocytogenes serotype
4b (strain CLIP80459) GN=rimP PE=3 SV=1
Length = 155
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
DE +L+ + + P W ++ D+ G +++ A ++DE + I +N
Sbjct: 17 DELQLELVDIAFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDEND---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVS-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>sp|Q01W33|RIMP_SOLUE Ribosome maturation factor RimP OS=Solibacter usitatus (strain
Ellin6076) GN=rimP PE=3 SV=2
Length = 153
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 43 AFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
A C T ++ E E +IP + +LEVSSPGVER + P + +RF
Sbjct: 51 ADCQTVSDKVGEILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRF 96
>sp|A8FDC7|RIMP_BACP2 Ribosome maturation factor RimP OS=Bacillus pumilus (strain
SAFR-032) GN=rimP PE=3 SV=1
Length = 157
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +E+ +LDEA+ I +N LEVSSPG ER PL
Sbjct: 40 VFIDSDKGVDIEECAKVSEALSEKLDEAD---PISQNYFLEVSSPGAER----PL----- 87
Query: 88 KDRAMYVKYVGETV--TTGSPSESDGVF--RLISFDMETECCTWGL----ADVRINREKA 139
K +A + K +G+ V T P + + F L SFD E T + ++ I EK
Sbjct: 88 KKKADFEKALGKNVFMKTYEPIDGEKAFEGELTSFDGEIATVTVKIKTRKKEINIPYEKI 147
Query: 140 GKGR 143
R
Sbjct: 148 ANAR 151
>sp|A3DE48|RIMP_CLOTH Ribosome maturation factor RimP OS=Clostridium thermocellum (strain
ATCC 27405 / DSM 1237) GN=rimP PE=3 SV=1
Length = 154
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
+ D+ G +++D + LD+ + IP + LEVSSPG++R ++ + ERF
Sbjct: 41 IYIDKPGGITIDDCQVVSEEISDILDKED---PIPHSYFLEVSSPGLDRPLKKESDFERF 97
Query: 88 KDRAMYVK 95
K + VK
Sbjct: 98 KGELVEVK 105
>sp|A5ILL0|RIMP_THEP1 Ribosome maturation factor RimP OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=rimP PE=3 SV=1
Length = 150
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ +++ + G S+ D E F LD ++ I + +LEVSSPG++R +R P
Sbjct: 37 WVLRIIIDNPVGYVSVRDCELFSREIERFLDREDL---IEHSYTLEVSSPGLDRPLRGPK 93
Query: 83 ELERFKDR-AMYVKYVGETVTTGSPSESDG 111
+ RF + A V G+T S DG
Sbjct: 94 DYVRFTGKLAKIVTKDGKTFIGRIESFVDG 123
>sp|Q39VA9|RIMP_GEOMG Ribosome maturation factor RimP OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=rimP PE=3 SV=1
Length = 159
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKD 89
D++G +++D + LD + I EN +LEVSSPG+ R ++ + ER++
Sbjct: 43 VDKAGGITLDDCALVSREFSEILD---VEDFISENYTLEVSSPGLNRPLKRESDYERYRG 99
Query: 90 RAMYVK 95
R + V+
Sbjct: 100 RLVKVR 105
>sp|Q9X299|RIMP_THEMA Ribosome maturation factor RimP OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=rimP PE=3 SV=1
Length = 150
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W+ +++ + G S+ D E F LD + I + +LEVSSPG++R +R P
Sbjct: 37 WVLRIIIDNPVGYVSVRDCELFSREMERFLDREDF---IEHSYTLEVSSPGLDRPLRGPR 93
Query: 83 ELERFKDR-AMYVKYVGETVTTGSPSESDG 111
+ RF + A V G+T S DG
Sbjct: 94 DYVRFTGKLAKIVTKDGKTFIGRIESFVDG 123
>sp|B7GG79|RIMP_ANOFW Ribosome maturation factor RimP OS=Anoxybacillus flavithermus
(strain DSM 21510 / WK1) GN=rimP PE=3 SV=2
Length = 156
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 51 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVK 95
+LDE + IP N LEVSSPG ER ++ + ER + +YVK
Sbjct: 62 KLDEID---PIPHNYFLEVSSPGAERPLKKARDFERAVGKNVYVK 103
>sp|C1F695|RIMP_ACIC5 Ribosome maturation factor RimP OS=Acidobacterium capsulatum
(strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rimP PE=3
SV=1
Length = 201
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 39 EDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
ED AF T + LD E+ E T LEVSSPG++R ++ + ERF
Sbjct: 84 EDCSAFSTDFGTLLDVEELMPGASEYT-LEVSSPGLDRKLQSRADYERF 131
>sp|Q74CT6|RIMP_GEOSL Ribosome maturation factor RimP OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=rimP PE=3 SV=1
Length = 159
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 30 CDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKD 89
D+ G S++D A LD + I EN +LEVSSPG+ R ++ + ER+
Sbjct: 43 VDKPGGISLDDCAAVSRELSEILD---VEDFIRENYTLEVSSPGLNRPLKKEADYERYAG 99
Query: 90 RAMYVK 95
R + V+
Sbjct: 100 RLVKVR 105
>sp|B5YJX5|RIMP_THEYD Ribosome maturation factor RimP OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=rimP PE=3 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 24 LTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVER 76
LT + D+ G +++D E F A LD + KS + +LEVSSPG++R
Sbjct: 37 LTLRIFIDKEGGVTIKDCENFSRAIEAILDVEDPIKS---SYTLEVSSPGIDR 86
>sp|A0AIC2|RIMP_LISW6 Ribosome maturation factor RimP OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rimP PE=3
SV=1
Length = 155
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 5 DEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 64
+E +L+ + + P W ++ D+ G +++ A ++DE++ I +N
Sbjct: 17 NELQLELVDIAFEKEGPNWFLRIF-IDKDGGVDIDECAAVSEKVSEKMDESD---PITQN 72
Query: 65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR--LISFDMET 122
LEVSSPG ER PL+ E+ + A+ KYV VT+ P + ++ L+S+D T
Sbjct: 73 YFLEVSSPGAER----PLKKEQDFENAVS-KYVH--VTSYEPIDGRKMWEGTLVSYDGTT 125
Query: 123 ECCT 126
T
Sbjct: 126 LVIT 129
>sp|Q8RHJ4|RIMP_FUSNN Ribosome maturation factor RimP OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=rimP PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W ++ + +G ++ED C+ +++ E ++ + I LEVSSPG+ER PL
Sbjct: 38 WYVRIFIENLNGDLNIED----CSKLSSKI-EDKVEELIEHKFFLEVSSPGLER----PL 88
Query: 83 ELERFKDRAMYVKYVGETVT 102
K Y +++GE +T
Sbjct: 89 -----KKLEDYTRFIGEKIT 103
>sp|P32726|RIMP_BACSU Ribosome maturation factor RimP OS=Bacillus subtilis (strain 168)
GN=rimP PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
V D +E+ +LDEA+ I +N LEVSSPG ER ++ + E+
Sbjct: 40 VFIDSDDGVDIEECAKVSEALSEKLDEAD---PISQNYFLEVSSPGAERPLKKKADFEKS 96
Query: 88 KDRAMYVKYV----GETVTTGSPSESDG 111
+ +Y+K G V G +E DG
Sbjct: 97 LGKNVYIKTYEPIDGVKVFEGELAEFDG 124
>sp|Q8RA33|RIMP_THETN Ribosome maturation factor RimP OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=rimP PE=3 SV=1
Length = 151
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELER 86
V D+ G +++D + RLDE + I + LEVSSPG++R ++ P + +R
Sbjct: 39 VYIDKEGGITLDDCQLVSEYLSDRLDEVD---PIDHSYILEVSSPGLDRPLKTPRDFKR 94
>sp|C0ZF55|RIMP_BREBN Ribosome maturation factor RimP OS=Brevibacillus brevis (strain 47
/ JCM 6285 / NBRC 100599) GN=rimP PE=3 SV=1
Length = 152
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 23 WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
W ++ + +G+ ++D +LDE + IP LEVSSPG ER +R
Sbjct: 35 WFLRVFIDNETGNIDIDDCRLVSEKLSEKLDEVD---PIPTAYFLEVSSPGAERPLR--- 88
Query: 83 ELERFKDRAMYVKYVGETV--TTGSPSESDGVF--RLISFD 119
KD+ + K VG V TT P E F L+S++
Sbjct: 89 -----KDKD-FTKAVGRNVHITTKEPIEGATTFEGELVSYE 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,046,953
Number of Sequences: 539616
Number of extensions: 2491418
Number of successful extensions: 6066
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 6000
Number of HSP's gapped (non-prelim): 205
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)