Query 030849
Match_columns 170
No_of_seqs 147 out of 1142
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ib8_A Conserved protein SP14. 100.0 9.5E-39 3.3E-43 252.4 13.6 128 12-169 19-161 (164)
2 1y96_A Gemin6, SIP2, GEM-assoc 79.2 8.5 0.00029 26.7 6.9 37 79-124 7-43 (86)
3 1wwj_A Circadian clock protein 57.9 13 0.00044 26.7 4.2 43 21-73 6-48 (105)
4 3byp_A CZRB protein; membrane 55.3 22 0.00075 23.5 4.9 60 15-81 35-94 (94)
5 1d3b_A Protein (small nuclear 53.0 8.6 0.00029 25.4 2.4 30 84-122 10-39 (75)
6 2rm4_A CG6311-PB, DM EDC3; enh 50.3 50 0.0017 23.4 6.1 60 86-167 9-70 (103)
7 1i4k_A Putative snRNP SM-like 47.0 12 0.00039 24.5 2.3 32 82-122 7-38 (77)
8 3s6n_F Small nuclear ribonucle 46.0 13 0.00046 25.1 2.6 33 81-122 8-40 (86)
9 3s6n_G Small nuclear ribonucle 45.9 9.1 0.00031 25.2 1.7 33 81-122 6-38 (76)
10 1d3b_B Protein (small nuclear 45.8 6.2 0.00021 26.8 0.8 33 81-122 6-38 (91)
11 4emk_C U6 snRNA-associated SM- 45.7 10 0.00035 27.3 2.0 40 74-122 17-57 (113)
12 1h64_1 SnRNP SM-like protein; 45.2 13 0.00046 24.1 2.4 32 82-122 7-38 (75)
13 4emk_B U6 snRNA-associated SM- 43.9 11 0.00038 24.7 1.8 32 82-122 7-38 (75)
14 1ljo_A Archaeal SM-like protei 43.8 18 0.00061 23.7 2.9 33 81-122 7-40 (77)
15 1mgq_A SM-like protein; LSM, R 41.3 25 0.00086 23.4 3.4 34 80-122 16-49 (83)
16 3bw1_A SMX4 protein, U6 snRNA- 41.1 18 0.00063 24.9 2.7 32 82-122 13-44 (96)
17 1th7_A SnRNP-2, small nuclear 40.3 16 0.00055 24.2 2.2 32 82-122 12-43 (81)
18 1ycy_A Conserved hypothetical 39.5 80 0.0027 20.8 6.6 35 81-124 8-42 (71)
19 3pgw_B SM B; protein-RNA compl 36.2 1.2E+02 0.0041 24.5 7.2 35 79-122 4-38 (231)
20 4emh_A Probable U6 snRNA-assoc 35.8 18 0.0006 25.7 1.9 30 84-122 21-50 (105)
21 1i8f_A Putative snRNP SM-like 34.1 21 0.00072 23.6 2.0 32 82-122 14-45 (81)
22 2y9a_D Small nuclear ribonucle 32.2 28 0.00096 25.4 2.6 41 82-134 8-48 (126)
23 1n9r_A SMF, small nuclear ribo 30.0 19 0.00066 24.8 1.3 32 82-122 24-56 (93)
24 4emk_A U6 snRNA-associated SM- 29.5 33 0.0011 23.8 2.4 37 77-122 17-54 (94)
25 1qd1_A Formiminotransferase-cy 26.8 38 0.0013 28.9 2.8 33 34-70 96-128 (325)
26 1b34_A Protein (small nuclear 26.7 44 0.0015 23.9 2.8 32 82-122 5-36 (119)
27 4emg_A Probable U6 snRNA-assoc 26.5 38 0.0013 23.1 2.3 37 73-122 6-43 (93)
28 4a53_A EDC3; RNA binding prote 25.8 1E+02 0.0035 22.7 4.6 32 85-125 8-39 (125)
29 1m5q_A SMAP3, small nuclear ri 25.1 46 0.0016 24.4 2.7 32 82-122 3-34 (130)
30 2fwk_A U6 snRNA-associated SM- 25.1 36 0.0012 24.4 2.1 31 83-122 32-62 (121)
31 2f6i_A ATP-dependent CLP prote 24.6 92 0.0031 24.3 4.6 58 34-97 46-104 (215)
32 3viv_A 441AA long hypothetical 24.4 97 0.0033 24.6 4.7 57 34-96 17-74 (230)
33 3fb9_A Uncharacterized protein 23.8 1.8E+02 0.0061 20.1 5.4 38 82-124 18-55 (90)
34 2e70_A Transcription elongatio 23.6 94 0.0032 20.6 3.7 40 71-122 5-45 (71)
35 2iqt_A Fructose-bisphosphate a 21.7 2.6E+02 0.0087 23.4 6.9 62 13-86 167-229 (296)
No 1
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=100.00 E-value=9.5e-39 Score=252.44 Aligned_cols=128 Identities=18% Similarity=0.291 Sum_probs=111.6
Q ss_pred ccccccCCccee-----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhh--hhhhcCCCCCCeEEEEecCCCCCCC
Q 030849 12 RNRVLNNKMPLW-----------LTQLVACDRSGSPSMEDIEAFCTTYRARLD--EAEIAKSIPENTSLEVSSPGVERVV 78 (170)
Q Consensus 12 ~~~~~~~g~~~~-----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD--~~d~~~~i~~~Y~LEVSSPGieRpL 78 (170)
.|++++ ||++| +|||| ||+++|||+|||+.+||+||+.|| ++| ||+++|+|||||||++|||
T Consensus 19 ~p~~~~-g~eLvdve~~~~g~~~~LrV~-ID~~~gi~lddC~~vSr~is~~LD~~~~d---~i~~~Y~LEVSSPGldRpL 93 (164)
T 1ib8_A 19 EPVIEA-PFELVDIEYGKIGSDMILSIF-VDKPEGITLNDTADLTEMISPVLDTIKPD---PFPEQYFLEITSPGLERPL 93 (164)
T ss_dssp HHHHCS-SSEEEEEEEEEETTEEEEEEE-EECSSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEEEEEECCSSSSCC
T ss_pred HHHHcC-CcEEEEEEEEecCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhcccccc---CCCCCeEEEEeCCCCCCCC
Confidence 477888 99976 47899 999999999999999999999999 888 9999999999999999999
Q ss_pred CChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEe
Q 030849 79 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNT 156 (170)
Q Consensus 79 ~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~i 156 (170)
++++||.||+|+.|+|+++. +++++++| +|.+++++.+++.|.. | .....++|
T Consensus 94 ~~~~df~r~~G~~V~V~l~~-------~~~g~k~~~G~L~~~~~~~v~l~~~~-----------k-------~~~~~~~i 148 (164)
T 1ib8_A 94 KTKDAVAGAVGKYIHVGLYQ-------AIDKQKVFEGTLLAFEEDELTMEYMD-----------K-------TRKKTVQI 148 (164)
T ss_dssp SSHHHHHHHCSEEEEEECSS-------CSSSCSEEEEEEEEEETTEEEEEEEC-----------S-------SCEEEEEE
T ss_pred CCHHHHHHhCCcEEEEEEec-------ccCCceEEEEEEEEEeCCEEEEEEec-----------c-------cCCeEEEE
Confidence 99999999999999999999 77888999 9999999995533320 0 11123789
Q ss_pred eccccceeEEEec
Q 030849 157 TFDSLRLVRLHSD 169 (170)
Q Consensus 157 p~~~I~karL~i~ 169 (170)
||++|++|||.++
T Consensus 149 ~~~~I~ka~l~~e 161 (164)
T 1ib8_A 149 PYSLVSKARLAVK 161 (164)
T ss_dssp CSSCCSSCEEECS
T ss_pred EHHHCcEEEEEEE
Confidence 9999999999986
No 2
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=79.15 E-value=8.5 Score=26.69 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=30.0
Q ss_pred CChHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcce
Q 030849 79 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETEC 124 (170)
Q Consensus 79 ~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~ 124 (170)
.+|-+|..++|+.|+|++.+ ....+| .|.++|.....
T Consensus 7 ~~p~el~~li~KeV~V~l~d-------g~~y~G--~l~tvDp~s~s 43 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTASE-------KNEYKG--WVLTTDPVSAN 43 (86)
T ss_dssp SCHHHHHHTTTCEEEEEETT-------TEEEEE--EEEEECTTTCC
T ss_pred CCHHHHHhhcCCEEEEEEcC-------CCEEEE--EEEEECCCceE
Confidence 46889999999999999988 444556 89999987744
No 3
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=57.88 E-value=13 Score=26.70 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=29.6
Q ss_pred ceeEEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCC
Q 030849 21 PLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPG 73 (170)
Q Consensus 21 ~~~~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPG 73 (170)
+.|.|++| ++....-|....+.+.+.+...| ++.|.|||-=..
T Consensus 6 ~~~~L~Ly-VaG~tp~S~~ai~nL~~i~e~~l---------~~~y~LeVIDv~ 48 (105)
T 1wwj_A 6 KTYVLKLY-VAGNTPNSVRALKMLKNILEQEF---------QGVYALKVIDVL 48 (105)
T ss_dssp EEEEEEEE-ESSCCHHHHHHHHHHHHHHHHHH---------TTSEEEEEEETT
T ss_pred CceEEEEE-EeCCCchHHHHHHHHHHHHHHhc---------CCCeEEEEEEcc
Confidence 45899999 99766556666665555544433 489999997544
No 4
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=55.30 E-value=22 Score=23.50 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=34.4
Q ss_pred cccCCcceeEEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCCh
Q 030849 15 VLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIP 81 (170)
Q Consensus 15 ~~~~g~~~~~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~ 81 (170)
+...|-. ..+.+- +.-++..|+.+...+...+...|-..- ++. .-++++- |...++|++|
T Consensus 35 ~~~~g~~-~~v~~h-i~v~~~~~~~~~h~i~~~ie~~l~~~~---~~~-~vtIh~e-p~~~~~~~~~ 94 (94)
T 3byp_A 35 TRRAGPR-SFLEFH-LVVRGDTPVEEAHRLCDELERALAQAF---PGL-QATIHVE-PEGERKRTNP 94 (94)
T ss_dssp EEEETTE-EEEEEE-EEECTTCBHHHHHHHHHHHHHHHHHHS---TTE-EEEEEEE-ECC-------
T ss_pred EEEECCc-EEEEEE-EEECCCCcHHHHHHHHHHHHHHHHHHC---CCC-EEEEEeC-CCCccccCCC
Confidence 3344522 444444 444567899999999999999886553 443 5677777 4566666653
No 5
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=52.97 E-value=8.6 Score=25.37 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=23.9
Q ss_pred HHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 84 LERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 84 f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
+..+.|+.|.|+++. ....+| +|.++|+.-
T Consensus 10 L~~~~g~~V~VeLk~-------g~~~~G--~L~~~D~~M 39 (75)
T 1d3b_A 10 LHEAEGHIVTCETNT-------GEVYRG--KLIEAEDNM 39 (75)
T ss_dssp HHHTTTSEEEEEETT-------SCEEEE--EEEEECTTC
T ss_pred HHHhCCCEEEEEECC-------CcEEEE--EEEEEccce
Confidence 457899999999988 445566 999998763
No 6
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=50.30 E-value=50 Score=23.45 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=39.7
Q ss_pred hcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeeccccce
Q 030849 86 RFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRL 163 (170)
Q Consensus 86 r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~~~I~k 163 (170)
.|+|..|.|...+ --|.| .+..++.+. +++. ..+.-|-+++....+ +++.-.||++
T Consensus 9 dwiG~~VSI~C~d----------~LGVyQG~I~~V~~~~---------ItL~-kaFrNGiplk~~~~E--VtLsa~DI~~ 66 (103)
T 2rm4_A 9 DWIGCAVSIACDE----------VLGVFQGLIKQISAEE---------ITIV-RAFRNGVPLRKQNAE--VVLKCTDIRS 66 (103)
T ss_dssp GGTTCEEEEEECT----------TTCEEEEEEEEEETTE---------EEEE-EEEETTEECSCSSSC--EEEETTTEEE
T ss_pred ceeceEEEEeeCC----------cceEeeEEEEEcccce---------eEEh-hhhhcCcCcCCCCce--EEEEecchhh
Confidence 7899999999877 23455 888999877 3333 233445433333333 7888888888
Q ss_pred eEEE
Q 030849 164 VRLH 167 (170)
Q Consensus 164 arL~ 167 (170)
.++.
T Consensus 67 L~II 70 (103)
T 2rm4_A 67 IDLI 70 (103)
T ss_dssp EEEE
T ss_pred eeee
Confidence 7763
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=46.95 E-value=12 Score=24.54 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=24.6
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
.-+.+++|+.|.|.+++ .....| +|.++|..-
T Consensus 7 ~~L~~~~~~~V~V~L~~-------g~~~~G--~L~~~D~~m 38 (77)
T 1i4k_A 7 DVLNRSLKSPVIVRLKG-------GREFRG--TLDGYDIHM 38 (77)
T ss_dssp HHHHTTTTSEEEEEETT-------SCEEEE--EEEEECTTC
T ss_pred HHHHHhCCCEEEEEEcC-------CCEEEE--EEEEEcCCC
Confidence 45678999999999988 333455 999999764
No 8
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=46.05 E-value=13 Score=25.13 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=24.9
Q ss_pred hHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
..-+..++|+.|.|.+++ .....| +|.++|..-
T Consensus 8 ~~~L~~~~~k~V~V~Lk~-------g~~~~G--~L~~~D~~m 40 (86)
T 3s6n_F 8 KPFLNGLTGKPVMVKLKW-------GMEYKG--YLVSVDGYM 40 (86)
T ss_dssp HHHHHHHTTSEEEEEETT-------SCEEEE--EEEEECTTC
T ss_pred HHHHHHhCCCeEEEEEcC-------CeEEEE--EEEEEcCce
Confidence 345578899999999988 334455 999998764
No 9
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=45.91 E-value=9.1 Score=25.21 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=19.5
Q ss_pred hHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
...+..++|+.|.|.+++ .....| +|.++|..-
T Consensus 6 ~~~L~~~~~k~V~V~Lk~-------gr~~~G--~L~~~D~~m 38 (76)
T 3s6n_G 6 PPELKKFMDKKLSLKLNG-------GRHVQG--ILRGFDPFM 38 (76)
T ss_dssp --------CCEEEEEETT-------TEEEEE--EEEEECTTC
T ss_pred hHHHHHhCCCeEEEEECC-------CcEEEE--EEEEECCcc
Confidence 456789999999999987 333455 899998764
No 10
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=45.80 E-value=6.2 Score=26.82 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=24.6
Q ss_pred hHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
...+.+++|+.|.|++++ .....| +|.++|..-
T Consensus 6 ~~~L~~~~~k~V~V~l~~-------gr~~~G--~L~~~D~~m 38 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQD-------GRIFIG--TFKAFDKHM 38 (91)
T ss_dssp -CCCGGGTTSEEEEEETT-------CCEEEE--EEEECCTTC
T ss_pred hHHHHHHcCCcEEEEECC-------CeEEEE--EEEEECCCC
Confidence 345678999999999987 333444 899998774
No 11
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=45.66 E-value=10 Score=27.26 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=20.2
Q ss_pred CCCCCC-ChHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 74 VERVVR-IPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 74 ieRpL~-~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
-++|-+ ...++.+++|+.|.|++++ .....| +|.++|..-
T Consensus 17 ~~~~kke~i~~L~~~l~k~V~V~L~d-------Gr~~~G--~L~~fD~~m 57 (113)
T 4emk_C 17 TERPRKESILDLSRYQDQRIQATFTG-------GRQITG--ILKGFDQLM 57 (113)
T ss_dssp ---------------CCSEEEEEETT-------SCEEEE--EEEEECTTC
T ss_pred ccCCccchHHHHHHHcCCcEEEEEeC-------CeEEEE--EEEEEcCcc
Confidence 455555 3478889999999999977 333444 899998764
No 12
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=45.22 E-value=13 Score=24.12 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=24.6
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
.-+..++|+.|.|.+++ .....| +|.++|..-
T Consensus 7 ~~L~~~~~~~V~V~l~~-------g~~~~G--~L~~~D~~m 38 (75)
T 1h64_1 7 DVIHRSLDKDVLVILKK-------GFEFRG--RLIGYDIHL 38 (75)
T ss_dssp HHHHTTTTSEEEEEETT-------SEEEEE--EEEEECTTC
T ss_pred HHHHHHCCCEEEEEECC-------CCEEEE--EEEEEeCCC
Confidence 45678999999999987 333455 999999764
No 13
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=43.92 E-value=11 Score=24.68 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=24.5
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
.-+..++|+.|.|.+++ .....| +|.++|..-
T Consensus 7 ~~L~~~~~k~V~V~Lk~-------g~~~~G--~L~~~D~~m 38 (75)
T 4emk_B 7 EFLNKVIGKKVLIRLSS-------GVDYKG--ILSCLDGYM 38 (75)
T ss_dssp HHHHHTTTSEEEEECTT-------SCEEEE--EEEEECTTC
T ss_pred HHHHHhCCCeEEEEEcC-------CcEEEE--EEEEEcCcc
Confidence 34678999999999987 334455 999998764
No 14
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=43.78 E-value=18 Score=23.66 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=25.1
Q ss_pred hHHHHhcCCCeEEEEEEeccccCCCC-CCCCceEEEEEEcCCc
Q 030849 81 PLELERFKDRAMYVKYVGETVTTGSP-SESDGVFRLISFDMET 122 (170)
Q Consensus 81 ~~~f~r~~G~~v~V~l~~~~~~~~~~-~~~~~~f~L~~vd~~~ 122 (170)
...+.+++|+.|.|.++. . ....| +|.++|..-
T Consensus 7 ~~~L~~~~~~~v~V~lk~-------g~~~~~G--~L~~~D~~m 40 (77)
T 1ljo_A 7 NQMVKSMVGKIIRVEMKG-------EENQLVG--KLEGVDDYM 40 (77)
T ss_dssp HHHHHHTTTSEEEEEETT-------CSSEEEE--EEEEECTTC
T ss_pred HHHHHHHCCCEEEEEEeC-------CCEEEEE--EEEEECCcc
Confidence 356789999999999976 3 33444 999999764
No 15
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=41.28 E-value=25 Score=23.39 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=26.0
Q ss_pred ChHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 80 IPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 80 ~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
-...+.+++|+.|.|.+++ .....| +|.++|..-
T Consensus 16 P~~~L~~~~~~~V~V~Lk~-------g~~~~G--~L~~~D~~m 49 (83)
T 1mgq_A 16 PLDALGNSLNSPVIIKLKG-------DREFRG--VLKSFDLHM 49 (83)
T ss_dssp TTHHHHHTTTSEEEEEETT-------TEEEEE--EEEEECTTC
T ss_pred hHHHHHHhCCCEEEEEEcC-------CcEEEE--EEEEECCCc
Confidence 3457788999999999987 333455 999998774
No 16
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=41.06 E-value=18 Score=24.88 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=24.5
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
..+..++|+.|.|++++ .....| +|.++|.--
T Consensus 13 ~~L~~~i~k~V~V~Lk~-------gr~~~G--~L~~fD~~m 44 (96)
T 3bw1_A 13 DLLKLNLDERVYIKLRG-------ARTLVG--TLQAFDSHC 44 (96)
T ss_dssp HHHGGGTTSEEEEEEGG-------GCEEEE--EEEEECTTC
T ss_pred HHHHHHCCCeEEEEECC-------CcEEEE--EEEEECCCC
Confidence 45678999999999988 333444 899998764
No 17
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=40.27 E-value=16 Score=24.17 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=24.7
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
..+.+++|+.|.|.+++ .....| +|.++|..-
T Consensus 12 ~~L~~~~~~~V~V~l~~-------g~~~~G--~L~~~D~~m 43 (81)
T 1th7_A 12 KVLAESLNNLVLVKLKG-------NKEVRG--MLRSYDQHM 43 (81)
T ss_dssp HHHHHHTTSEEEEEETT-------TEEEEE--EEEEECTTC
T ss_pred HHHHHhCCCeEEEEEcC-------CcEEEE--EEEEEcCCC
Confidence 45678999999999987 333445 999998774
No 18
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=39.46 E-value=80 Score=20.76 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=25.3
Q ss_pred hHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcce
Q 030849 81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETEC 124 (170)
Q Consensus 81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~ 124 (170)
.+-+.++.|++|.|.... .....| .|.++|++.+.
T Consensus 8 dktL~~WKg~rvAv~vg~-------ehSFtG--iledFDeEviL 42 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGG-------DHSFTG--TLEDFDEEVIL 42 (71)
T ss_dssp HHHHHHHTTSEEEEEEC-----------CEE--EEEEECSSEEE
T ss_pred HHHHHHhCCcEEEEEecC-------cceeee--ehhhcCcceee
Confidence 355789999999998876 444566 99999999843
No 19
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=36.23 E-value=1.2e+02 Score=24.52 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=26.9
Q ss_pred CChHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 79 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 79 ~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
.....+.+|+++.|.|++++ ..+..+ +|..+|..-
T Consensus 4 ~k~~kL~klIdKrV~V~Lkd-------GRel~G--tLkgFDq~M 38 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQD-------GRIFIG--TFKAFDKHM 38 (231)
T ss_pred CchHHHHHhcCCeEEEEECC-------CcEEEE--EEEEEcccc
Confidence 45568899999999999988 333344 899998764
No 20
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=35.79 E-value=18 Score=25.68 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=19.6
Q ss_pred HHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 84 LERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 84 f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
+..++|+.|.|.|+. ....+| +|.++|+--
T Consensus 21 L~~~igk~V~V~Lk~-------G~~~~G--~L~~~D~~M 50 (105)
T 4emh_A 21 LNATQGRPILVELKN-------GETFNG--HLENCDNYM 50 (105)
T ss_dssp -----CCEEEEEETT-------SCEEEE--EEEEECTTC
T ss_pred HHHhCCCEEEEEECC-------CCEEEE--EEEEEcCCc
Confidence 457889999999988 334555 899998763
No 21
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=34.12 E-value=21 Score=23.63 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=24.4
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
..+.+++|+.|.|.+++ .....| +|.++|..-
T Consensus 14 ~~L~~~~~~~V~V~l~~-------g~~~~G--~L~~~D~~m 45 (81)
T 1i8f_A 14 ATLQDSIGKQVLVKLRD-------SHEIRG--ILRSFDQHV 45 (81)
T ss_dssp HHHHTTTTSEEEEEEGG-------GEEEEE--EEEEECTTC
T ss_pred HHHHHHCCCeEEEEEcC-------CcEEEE--EEEEEcCCC
Confidence 45678899999999987 233444 899998774
No 22
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=32.20 E-value=28 Score=25.42 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=28.8
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcceEeeceeeeEE
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRI 134 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~~~~~~~~v~i 134 (170)
.-+..++|+.|.|.|+. ..+.++ +|.++|+.- -..|.+++.
T Consensus 8 ~~L~~~~gk~V~VeLkn-------G~~~~G--~L~~~D~~M---Ni~L~dv~e 48 (126)
T 2y9a_D 8 KVLHEAEGHIVTCETNT-------GEVYRG--KLIEAEDNM---NCQMSNITV 48 (126)
T ss_dssp HHHHSCSSCEEEEEESS-------CCEEEE--EEEEECTTS---CEEEEEEEE
T ss_pred HHHHHhCCCEEEEEECC-------CcEEEE--EEEEEcCce---EEEEeeEEE
Confidence 34568999999999988 444566 999998763 233444544
No 23
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=30.04 E-value=19 Score=24.77 Aligned_cols=32 Identities=25% Similarity=0.116 Sum_probs=23.0
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCC-CCCCceEEEEEEcCCc
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSP-SESDGVFRLISFDMET 122 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~-~~~~~~f~L~~vd~~~ 122 (170)
.-+..++|+.|.|.+++ . ....| +|.++|+--
T Consensus 24 ~~L~~~i~k~V~V~Lk~-------g~~~~~G--~L~~~D~~M 56 (93)
T 1n9r_A 24 PFLKGLVNHRVGVKLKF-------NSTEYRG--TLVSTDNYF 56 (93)
T ss_dssp --CGGGTTSEEEEEESS-------TTEEEEE--EEEECCTTT
T ss_pred HHHHHhCCCEEEEEEcC-------CCEEEEE--EEEEEcccc
Confidence 34567889999999988 3 33445 999998764
No 24
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=29.45 E-value=33 Score=23.76 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=24.9
Q ss_pred CCCChHHH-HhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 77 VVRIPLEL-ERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 77 pL~~~~~f-~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
....|-.| .+++|+.|.|.++. .....| +|.++|.--
T Consensus 17 ~~~~Pl~lL~~~l~k~V~V~Lk~-------gr~~~G--~L~gfD~~m 54 (94)
T 4emk_A 17 MTILPLELIDKCIGSNLWVIMKS-------EREFAG--TLVGFDDYV 54 (94)
T ss_dssp ---CHHHHHHHTTTSEEEEEESS-------SEEEEE--EEEEECTTC
T ss_pred ccccCHHHHHHHcCCeEEEEECC-------CcEEEE--EEEEEcccC
Confidence 34445444 68899999999987 333445 999998764
No 25
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=26.79 E-value=38 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEe
Q 030849 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVS 70 (170)
Q Consensus 34 ~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVS 70 (170)
.++|+++|.++++.+...+-.+- -+| -|.-|=+
T Consensus 96 ~~~tmeec~~lA~~~g~~i~~~l---~VP-VyLYg~A 128 (325)
T 1qd1_A 96 RGVTMDECVRCAQAFGQRLAEEL---GVP-VYLYGEA 128 (325)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHHH---TCC-EEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHhhhc---CCc-EEeehhh
Confidence 47999999999999999986443 333 4666655
No 26
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=26.68 E-value=44 Score=23.86 Aligned_cols=32 Identities=9% Similarity=0.218 Sum_probs=24.6
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
..+..++|+.|.|.|++ .....+ +|.++|+.-
T Consensus 5 ~~L~~~~gk~V~V~Lk~-------g~~~~G--~L~~~D~~M 36 (119)
T 1b34_A 5 RFLMKLSHETVTIELKN-------GTQVHG--TITGVDVSM 36 (119)
T ss_dssp HHHHTCTTCEEEEEETT-------CCEEEE--EEEEECTTC
T ss_pred HHHHHhCCCEEEEEEcC-------CCEEEE--EEEEEcccc
Confidence 45678999999999987 334455 899998764
No 27
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=26.46 E-value=38 Score=23.15 Aligned_cols=37 Identities=35% Similarity=0.564 Sum_probs=24.1
Q ss_pred CCCCCCCChHHHHhc-CCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 73 GVERVVRIPLELERF-KDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 73 GieRpL~~~~~f~r~-~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
++..|| +|.+. +|+.|.|.+++ .....| +|.++|..-
T Consensus 6 ~~~~Pl----~lL~~~~~~~V~V~l~~-------gr~~~G--~L~~~D~~m 43 (93)
T 4emg_A 6 AVAEPL----DLVRLSLDEIVYVKLRG-------DRELNG--RLHAYDEHL 43 (93)
T ss_dssp ---CTT----HHHHTTTTSEEEEEETT-------TEEEEE--EEEEECTTC
T ss_pred ccCCCH----HHHHHhCCCEEEEEECC-------CcEEEE--EEEEECCcc
Confidence 444554 55544 89999999977 333444 999998764
No 28
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=25.82 E-value=1e+02 Score=22.69 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=25.8
Q ss_pred HhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcceE
Q 030849 85 ERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECC 125 (170)
Q Consensus 85 ~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~~ 125 (170)
..|+|..|.|+|++ ....+| +|..++...+++
T Consensus 8 sqFlGy~V~v~LkD-------gs~~qG--~I~~vd~k~LtL 39 (125)
T 4a53_A 8 ADFYGSNVEVLLNN-------DSKARG--VITNFDSSNSIL 39 (125)
T ss_dssp HHHTTCEEEEEETT-------SCEEEE--EEEEEETTTTEE
T ss_pred HHhcCceEEEEECC-------CCEeeE--EEEeecCCeeEE
Confidence 46899999999987 334566 899999999776
No 29
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=25.10 E-value=46 Score=24.37 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=24.7
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
..+..++|+.|.|.+++ .....| +|.++|+.-
T Consensus 3 ~~L~~~igk~V~V~Lk~-------G~~~~G--~L~~~D~~M 34 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSN-------GEVYKG--VLHAVDNQL 34 (130)
T ss_dssp HHHHHTTTSEEEEEETT-------SCEEEE--EEEEECTTC
T ss_pred hHHHHhCCCeEEEEECC-------CcEEEE--EEEEEcccc
Confidence 35678999999999988 334455 899998663
No 30
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=25.07 E-value=36 Score=24.40 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred HHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCc
Q 030849 83 ELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 122 (170)
Q Consensus 83 ~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~ 122 (170)
-+.+++|+.|.|.++. .....| +|.++|..-
T Consensus 32 lL~~~l~k~V~V~Lk~-------Gr~~~G--~L~~fD~~m 62 (121)
T 2fwk_A 32 LIDKCIGNRIYVVMKG-------DKEFSG--VLRGFDEYV 62 (121)
T ss_dssp HHHHTBTSBCEEEETT-------TEEECC--EEEEECTTC
T ss_pred HHHHHcCCeEEEEECC-------CcEEEE--EEEEEcccC
Confidence 3468999999999988 334455 899998764
No 31
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=24.59 E-value=92 Score=24.28 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCC-CCCCChHHHHhcCCCeEEEEEE
Q 030849 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVE-RVVRIPLELERFKDRAMYVKYV 97 (170)
Q Consensus 34 ~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGie-RpL~~~~~f~r~~G~~v~V~l~ 97 (170)
|.|+-.....+.+.|.. |+.++ + .+-.|.|.|||=. -.-....+..++...+|.+...
T Consensus 46 G~I~~~~a~~i~~~L~~-l~~~~---~--k~I~l~INSPGGsv~a~~~I~~~i~~~~~pV~t~v~ 104 (215)
T 2f6i_A 46 DEINKKTADELISQLLY-LDNIN---H--NDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISF 104 (215)
T ss_dssp SCBCHHHHHHHHHHHHH-HHHHC---C--SCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEE
T ss_pred cEECHHHHHHHHHHHHH-HHhCC---C--CcEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEe
Confidence 55776656566555542 23344 4 7789999999965 1222233444555556665443
No 32
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=24.43 E-value=97 Score=24.55 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCC-CCCCChHHHHhcCCCeEEEEE
Q 030849 34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVE-RVVRIPLELERFKDRAMYVKY 96 (170)
Q Consensus 34 ~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGie-RpL~~~~~f~r~~G~~v~V~l 96 (170)
|.|+-..+..+.+.|..+-+ + . .....|.+.|||-+ ......-+..++...+|-...
T Consensus 17 g~I~~~~~~~l~~~l~~a~~--~---~-~~~Ivl~inspGG~v~~~~~i~~~i~~~~~PVia~v 74 (230)
T 3viv_A 17 GQITSYTYDQFDRYITIAEQ--D---N-AEAIIIELDTPGGRADAMMNIVQRIQQSKIPVIIYV 74 (230)
T ss_dssp SCBCHHHHHHHHHHHHHHHH--T---T-CSEEEEEEEBSCEEHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CEECHHHHHHHHHHHHHHhc--C---C-CCEEEEEEeCCCcCHHHHHHHHHHHHhCCCCEEEEE
Confidence 67888888888888866543 2 2 36689999999954 222333344456667776655
No 33
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=23.78 E-value=1.8e+02 Score=20.10 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=23.3
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcce
Q 030849 82 LELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETEC 124 (170)
Q Consensus 82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~ 124 (170)
++...++|+.|.++.+.-- ..-++..| +|.++=..-.+
T Consensus 18 ~~l~~~vG~~V~l~An~GR---kK~~er~G--vL~etYPSvFv 55 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGR---KRQKNRLG--KLIEVYPSLFI 55 (90)
T ss_dssp HHHHHTTTSEEEEEECCSS---SCCSCEEE--EEEEECSSEEE
T ss_pred HHHHHcCCCEEEEEecCCc---ccEEEEEE--EEEEecCcEEE
Confidence 4677899999999887610 01122233 77777666533
No 34
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.65 E-value=94 Score=20.56 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=25.0
Q ss_pred cCCCCCCCCChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE-EEEEEcCCc
Q 030849 71 SPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDMET 122 (170)
Q Consensus 71 SPGieRpL~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f-~L~~vd~~~ 122 (170)
|.|..|. +. .--...+|+.|+|+- . |. .+.. ++.++++..
T Consensus 5 ~gG~~~g-r~-~grd~liGktV~I~k-G-------py--KG~~GiVkd~t~~~ 45 (71)
T 2e70_A 5 SSGMSRG-RG-RRDNELIGQTVRISQ-G-------PY--KGYIGVVKDATEST 45 (71)
T ss_dssp CSCCCCC-SS-CCTTSSTTSEEEECS-S-------TT--TTCEEEEEEECSSC
T ss_pred cCCcCCC-CC-cCccccCCCEEEEec-c-------CC--CCeEEEEEECCCCe
Confidence 4555554 22 223478999999853 2 32 4434 888999988
No 35
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Probab=21.67 E-value=2.6e+02 Score=23.42 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=42.4
Q ss_pred cccccCCcceeEEEEEEEcCCCCCCHHHHHHHHHHH-HHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHh
Q 030849 13 NRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTY-RARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELER 86 (170)
Q Consensus 13 ~~~~~~g~~~~~lrv~~iD~~~gvtlddC~~vSr~i-s~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r 86 (170)
.+|.++|+- .+|+=- |..+|. +++.|+.|++.+ ...++... +...||.+=||.+- .+.+...
T Consensus 167 ~icq~~GLV-PIVEPE-Vl~dg~-d~~~c~~vte~vL~~v~~aL~------~~V~Legtlpg~~~---~~~~va~ 229 (296)
T 2iqt_A 167 KEILSHGLV-PILEPE-VDIHCP-EKAKAEEILKRELLAQLDKMT------EPVMLKITIPTVDN---FYKEIIE 229 (296)
T ss_dssp HHHHTTTCE-EEEEEE-ECTTCT-THHHHHHHHHHHHHHHHHHCS------SCEEEEEECCSSTT---TTHHHHT
T ss_pred HHHHHcCcc-ceecce-ECCCCC-CHHHHHHHHHHHHHHHHHHHh------hCcEEecccCCCCC---CHHhhcC
Confidence 445566663 344433 445556 999999998776 55677654 27889999999987 5556554
Done!