Query 030851
Match_columns 170
No_of_seqs 103 out of 1162
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:32:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 2.8E-34 6E-39 226.5 15.3 140 1-143 126-265 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 3.6E-31 7.9E-36 209.3 14.3 142 1-142 144-285 (300)
3 PRK11172 dkgB 2,5-diketo-D-glu 100.0 8E-31 1.7E-35 207.8 15.7 138 1-142 114-252 (267)
4 KOG1575 Voltage-gated shaker-l 100.0 8.4E-30 1.8E-34 204.8 14.1 148 1-148 150-331 (336)
5 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.2E-29 4.7E-34 200.5 15.6 140 1-142 123-262 (275)
6 PRK10376 putative oxidoreducta 100.0 9.4E-28 2E-32 192.3 14.9 136 1-142 150-288 (290)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 1.9E-27 4.1E-32 194.8 15.2 143 1-143 153-334 (346)
8 PF00248 Aldo_ket_red: Aldo/ke 100.0 5.2E-28 1.1E-32 192.4 11.3 141 1-141 122-282 (283)
9 TIGR01293 Kv_beta voltage-depe 100.0 1.8E-27 3.9E-32 192.8 14.0 140 1-140 135-316 (317)
10 COG0667 Tas Predicted oxidored 100.0 4.2E-27 9.2E-32 190.5 15.5 141 1-142 141-309 (316)
11 PRK10625 tas putative aldo-ket 99.9 4.6E-27 1E-31 192.5 15.1 142 1-142 164-339 (346)
12 cd06660 Aldo_ket_red Aldo-keto 99.9 1.2E-26 2.6E-31 184.7 15.5 139 1-139 133-284 (285)
13 PLN02587 L-galactose dehydroge 99.9 4.6E-25 9.9E-30 178.5 13.6 142 1-142 137-300 (314)
14 PRK14863 bifunctional regulato 99.9 2.5E-25 5.5E-30 178.5 11.5 140 1-142 127-282 (292)
15 COG4989 Predicted oxidoreducta 99.9 1.3E-24 2.9E-29 167.0 11.2 142 1-142 142-293 (298)
16 COG1453 Predicted oxidoreducta 99.9 3.3E-22 7.3E-27 160.9 12.3 136 1-142 136-285 (391)
17 KOG1576 Predicted oxidoreducta 99.7 1.3E-16 2.7E-21 124.2 11.5 139 1-140 163-320 (342)
18 KOG3023 Glutamate-cysteine lig 98.3 7.5E-07 1.6E-11 68.8 5.0 67 1-67 162-229 (285)
19 PRK10558 alpha-dehydro-beta-de 94.0 0.6 1.3E-05 37.0 9.0 97 5-127 14-115 (256)
20 PRK10128 2-keto-3-deoxy-L-rham 93.1 1.2 2.6E-05 35.6 9.4 97 5-127 13-114 (267)
21 TIGR03239 GarL 2-dehydro-3-deo 92.8 1.2 2.7E-05 35.0 9.1 97 5-127 7-108 (249)
22 COG1140 NarY Nitrate reductase 90.7 0.15 3.3E-06 42.4 1.8 52 8-60 264-317 (513)
23 TIGR02311 HpaI 2,4-dihydroxyhe 90.3 3.8 8.2E-05 32.2 9.4 99 3-127 5-108 (249)
24 COG1149 MinD superfamily P-loo 80.5 4.2 9.1E-05 32.6 5.0 51 17-69 200-250 (284)
25 PRK12360 4-hydroxy-3-methylbut 79.0 18 0.00038 29.2 8.2 105 9-122 158-274 (281)
26 PRK01045 ispH 4-hydroxy-3-meth 78.5 17 0.00038 29.5 8.1 107 8-122 156-275 (298)
27 TIGR00216 ispH_lytB (E)-4-hydr 75.8 22 0.00047 28.7 7.9 106 8-122 154-273 (280)
28 PF07021 MetW: Methionine bios 75.6 11 0.00024 28.6 5.9 70 1-70 95-171 (193)
29 COG0761 lytB 4-Hydroxy-3-methy 74.4 23 0.00051 28.6 7.7 108 9-124 159-279 (294)
30 COG4130 Predicted sugar epimer 67.4 47 0.001 26.0 7.6 74 18-91 49-136 (272)
31 PF02401 LYTB: LytB protein; 65.1 25 0.00053 28.4 6.1 107 8-122 155-274 (281)
32 PF01408 GFO_IDH_MocA: Oxidore 62.8 43 0.00093 22.3 7.1 82 4-91 19-114 (120)
33 COG0159 TrpA Tryptophan syntha 61.1 50 0.0011 26.4 7.1 52 33-91 95-148 (265)
34 PF14871 GHL6: Hypothetical gl 57.5 42 0.0009 23.7 5.6 21 48-68 47-67 (132)
35 PRK00087 4-hydroxy-3-methylbut 57.4 59 0.0013 29.3 7.7 105 8-121 154-270 (647)
36 TIGR03822 AblA_like_2 lysine-2 57.1 87 0.0019 25.5 8.1 67 2-70 160-239 (321)
37 TIGR03569 NeuB_NnaB N-acetylne 56.9 18 0.00039 29.8 4.1 66 48-125 79-155 (329)
38 COG2185 Sbm Methylmalonyl-CoA 54.1 43 0.00094 24.2 5.2 70 12-90 19-91 (143)
39 PF03102 NeuB: NeuB family; I 53.9 13 0.00029 29.2 2.7 65 48-125 59-135 (241)
40 COG2089 SpsE Sialic acid synth 52.8 24 0.00052 29.1 4.1 66 48-125 93-169 (347)
41 COG1168 MalY Bifunctional PLP- 47.9 47 0.001 28.0 5.1 51 19-69 146-202 (388)
42 PF13378 MR_MLE_C: Enolase C-t 46.5 37 0.0008 22.6 3.8 49 16-66 3-54 (111)
43 PRK08776 cystathionine gamma-s 45.3 85 0.0018 26.4 6.5 63 7-70 122-187 (405)
44 PRK09140 2-dehydro-3-deoxy-6-p 45.1 1.4E+02 0.0029 22.8 8.5 118 15-141 16-148 (206)
45 PRK13602 putative ribosomal pr 44.4 59 0.0013 20.9 4.3 58 1-65 3-60 (82)
46 PF11242 DUF2774: Protein of u 44.3 36 0.00078 20.9 3.0 22 81-102 15-36 (63)
47 PF00809 Pterin_bind: Pterin b 44.3 63 0.0014 24.5 5.1 52 12-67 74-125 (210)
48 COG0108 RibB 3,4-dihydroxy-2-b 43.6 64 0.0014 24.7 4.9 41 25-65 148-192 (203)
49 TIGR03586 PseI pseudaminic aci 42.2 39 0.00085 27.8 3.9 66 48-125 80-156 (327)
50 COG2159 Predicted metal-depend 39.9 2E+02 0.0043 23.2 7.6 57 9-69 97-168 (293)
51 COG0673 MviM Predicted dehydro 38.6 1.3E+02 0.0028 24.1 6.4 82 4-91 23-119 (342)
52 PRK07998 gatY putative fructos 38.5 1.9E+02 0.0042 23.3 7.3 74 19-95 86-171 (283)
53 TIGR03821 AblA_like_1 lysine-2 37.5 2.3E+02 0.0049 23.1 7.8 78 4-86 168-257 (321)
54 TIGR01761 thiaz-red thiazoliny 37.3 2.2E+02 0.0048 23.6 7.6 80 4-90 21-115 (343)
55 TIGR00381 cdhD CO dehydrogenas 37.0 99 0.0021 26.2 5.5 51 17-69 200-251 (389)
56 PF05221 AdoHcyase: S-adenosyl 36.8 99 0.0021 24.8 5.2 54 12-67 45-101 (268)
57 TIGR01329 cysta_beta_ly_E cyst 36.4 1.3E+02 0.0029 24.9 6.3 58 12-70 113-173 (378)
58 KOG0369 Pyruvate carboxylase [ 35.5 1.2E+02 0.0025 28.1 5.9 28 48-75 174-201 (1176)
59 PF01120 Alpha_L_fucos: Alpha- 35.4 91 0.002 25.7 5.1 56 14-69 87-162 (346)
60 TIGR01660 narH nitrate reducta 35.3 21 0.00046 30.9 1.3 52 8-60 264-317 (492)
61 PRK10945 gene expression modul 34.2 39 0.00084 21.4 2.1 42 111-153 17-61 (72)
62 COG0352 ThiE Thiamine monophos 33.9 2.1E+02 0.0046 22.0 6.5 54 11-65 105-165 (211)
63 COG0159 TrpA Tryptophan syntha 33.6 2.5E+02 0.0054 22.5 7.9 87 46-140 135-243 (265)
64 PRK08247 cystathionine gamma-s 33.2 1.7E+02 0.0037 24.0 6.4 58 10-68 116-176 (366)
65 TIGR02026 BchE magnesium-proto 33.2 3.2E+02 0.007 23.6 9.6 115 2-124 232-361 (497)
66 cd08605 GDPD_GDE5_like_1_plant 33.0 97 0.0021 24.5 4.8 26 5-30 165-190 (282)
67 cd08561 GDPD_cytoplasmic_ScUgp 32.6 2.1E+02 0.0046 21.9 6.6 65 3-67 127-221 (249)
68 cd00308 enolase_like Enolase-s 32.5 1.7E+02 0.0037 22.2 6.0 62 4-67 140-205 (229)
69 COG0773 MurC UDP-N-acetylmuram 32.0 6.8 0.00015 33.7 -2.1 59 48-111 80-141 (459)
70 PF11239 DUF3040: Protein of u 31.8 24 0.00053 22.6 0.9 27 128-154 2-28 (82)
71 PRK04452 acetyl-CoA decarbonyl 31.8 1.1E+02 0.0024 25.1 4.9 46 19-67 138-184 (319)
72 cd04742 NPD_FabD 2-Nitropropan 31.3 2.4E+02 0.0052 24.2 7.0 62 4-66 34-103 (418)
73 cd08568 GDPD_TmGDE_like Glycer 31.2 2.3E+02 0.005 21.4 6.8 28 4-31 112-139 (226)
74 cd00248 Mth938-like Mth938-lik 30.6 1.7E+02 0.0038 19.7 6.0 51 17-67 38-88 (109)
75 cd08606 GDPD_YPL110cp_fungi Gl 30.0 1.7E+02 0.0038 23.0 5.8 28 3-30 158-185 (286)
76 PRK13505 formate--tetrahydrofo 29.9 1.3E+02 0.0028 26.8 5.2 49 23-71 364-414 (557)
77 KOG0369 Pyruvate carboxylase [ 29.7 1.6E+02 0.0034 27.3 5.7 84 21-110 96-189 (1176)
78 TIGR02080 O_succ_thio_ly O-suc 29.3 2E+02 0.0043 24.0 6.2 62 7-69 113-177 (382)
79 PRK06015 keto-hydroxyglutarate 29.1 1.4E+02 0.0031 22.8 4.8 16 48-63 87-102 (201)
80 PF06506 PrpR_N: Propionate ca 29.0 2.2E+02 0.0048 20.7 5.9 50 9-63 79-130 (176)
81 cd04436 DEP_fRgd2 DEP (Disheve 28.9 21 0.00046 23.3 0.3 16 2-17 56-72 (84)
82 PF02786 CPSase_L_D2: Carbamoy 28.9 2.4E+02 0.0052 21.4 6.2 41 45-85 25-66 (211)
83 KOG3085 Predicted hydrolase (H 28.8 84 0.0018 24.7 3.6 55 1-57 122-180 (237)
84 PF00289 CPSase_L_chain: Carba 28.7 76 0.0016 21.6 3.0 28 35-62 76-103 (110)
85 cd03319 L-Ala-DL-Glu_epimerase 28.3 2E+02 0.0042 23.1 5.9 48 18-67 238-288 (316)
86 cd05560 Xcc1710_like Xcc1710_l 28.2 1.9E+02 0.0042 19.5 5.6 49 18-67 40-88 (109)
87 PF03618 Kinase-PPPase: Kinase 28.2 3.1E+02 0.0067 21.8 6.8 43 19-63 38-82 (255)
88 cd00947 TBP_aldolase_IIB Tagat 28.1 2.8E+02 0.006 22.3 6.6 71 19-92 81-163 (276)
89 PRK08574 cystathionine gamma-s 27.8 1.4E+02 0.0029 25.0 5.0 52 19-70 125-179 (385)
90 COG0626 MetC Cystathionine bet 27.7 2.6E+02 0.0056 23.8 6.6 67 4-70 122-191 (396)
91 cd00423 Pterin_binding Pterin 27.4 2.2E+02 0.0047 22.3 5.9 52 13-68 79-130 (258)
92 PRK07179 hypothetical protein; 27.1 3.2E+02 0.0069 22.6 7.1 57 13-69 163-222 (407)
93 COG5625 Predicted transcriptio 26.9 89 0.0019 21.3 3.0 27 2-28 68-94 (113)
94 cd08572 GDPD_GDE5_like Glycero 26.7 2E+02 0.0044 23.0 5.7 29 3-31 172-200 (293)
95 cd05126 Mth938 Mth938 domain. 26.7 2.2E+02 0.0047 19.6 5.5 49 17-66 45-94 (117)
96 PF12728 HTH_17: Helix-turn-he 26.7 1.1E+02 0.0023 17.2 3.1 26 3-28 20-48 (51)
97 PF05848 CtsR: Firmicute trans 26.4 2.2E+02 0.0048 20.8 5.2 55 82-136 28-100 (152)
98 COG1167 ARO8 Transcriptional r 26.3 2.3E+02 0.005 24.3 6.2 58 10-67 201-269 (459)
99 PRK10206 putative oxidoreducta 26.3 1.5E+02 0.0033 24.2 5.0 61 23-91 56-116 (344)
100 cd00739 DHPS DHPS subgroup of 26.1 2.4E+02 0.0053 22.2 5.9 50 13-66 79-128 (257)
101 PRK13753 dihydropteroate synth 25.9 2.3E+02 0.005 22.8 5.7 59 2-67 70-128 (279)
102 PRK06361 hypothetical protein; 25.8 2.8E+02 0.0061 20.6 6.5 15 49-63 126-140 (212)
103 PRK07709 fructose-bisphosphate 25.4 1.5E+02 0.0034 23.8 4.7 71 19-92 89-171 (285)
104 PRK12738 kbaY tagatose-bisphos 25.3 2.2E+02 0.0047 23.0 5.5 72 19-93 86-171 (286)
105 PRK07535 methyltetrahydrofolat 25.3 3.4E+02 0.0075 21.4 9.1 57 13-70 72-128 (261)
106 TIGR02814 pfaD_fam PfaD family 25.2 1.3E+02 0.0029 25.9 4.5 61 4-65 39-107 (444)
107 PF05321 HHA: Haemolysin expre 24.8 26 0.00055 21.2 0.1 34 112-145 6-39 (57)
108 PRK06552 keto-hydroxyglutarate 24.8 78 0.0017 24.3 2.8 102 15-125 19-129 (213)
109 cd00401 AdoHcyase S-adenosyl-L 24.7 2.3E+02 0.005 24.2 5.8 53 12-66 38-93 (413)
110 smart00481 POLIIIAc DNA polyme 24.7 99 0.0022 18.4 2.8 21 48-68 18-38 (67)
111 TIGR01928 menC_lowGC/arch o-su 24.6 2E+02 0.0044 23.2 5.4 54 12-67 227-283 (324)
112 PRK12737 gatY tagatose-bisphos 24.6 2.7E+02 0.0059 22.4 5.9 71 20-93 87-171 (284)
113 cd03315 MLE_like Muconate lact 24.5 2.4E+02 0.0052 21.9 5.6 16 49-64 222-237 (265)
114 PLN02494 adenosylhomocysteinas 24.1 2.3E+02 0.0049 24.8 5.7 55 12-68 48-105 (477)
115 PRK09331 Sep-tRNA:Cys-tRNA syn 23.9 2.5E+02 0.0054 23.2 5.9 62 9-70 125-200 (387)
116 COG3033 TnaA Tryptophanase [Am 23.9 2.2E+02 0.0047 24.3 5.3 49 17-65 168-226 (471)
117 PRK08861 cystathionine gamma-s 23.9 3.2E+02 0.0068 22.9 6.5 60 10-70 118-180 (388)
118 cd03323 D-glucarate_dehydratas 23.8 2.3E+02 0.0051 23.8 5.7 63 3-67 255-321 (395)
119 cd00378 SHMT Serine-glycine hy 23.8 2.4E+02 0.0052 23.1 5.8 49 18-66 148-197 (402)
120 PRK07811 cystathionine gamma-s 23.8 2.5E+02 0.0055 23.3 5.9 52 18-70 134-188 (388)
121 TIGR01378 thi_PPkinase thiamin 23.5 3.3E+02 0.0071 20.5 6.6 36 90-125 71-110 (203)
122 PRK05939 hypothetical protein; 23.0 3.2E+02 0.007 22.9 6.4 52 18-70 119-173 (397)
123 cd03322 rpsA The starvation se 22.8 2.6E+02 0.0056 23.1 5.7 63 3-67 208-274 (361)
124 PRK00011 glyA serine hydroxyme 22.8 2.5E+02 0.0054 23.3 5.7 58 9-66 139-201 (416)
125 cd00614 CGS_like CGS_like: Cys 22.7 3E+02 0.0065 22.6 6.1 51 19-70 114-167 (369)
126 TIGR01304 IMP_DH_rel_2 IMP deh 22.5 3.6E+02 0.0078 22.7 6.4 62 2-63 126-193 (369)
127 cd08607 GDPD_GDE5 Glycerophosp 22.4 3.4E+02 0.0074 21.3 6.2 25 5-29 170-194 (290)
128 PRK11579 putative oxidoreducta 22.4 2.2E+02 0.0047 23.2 5.1 61 23-91 56-116 (346)
129 TIGR00936 ahcY adenosylhomocys 22.4 2.8E+02 0.006 23.7 5.8 53 12-66 34-89 (406)
130 smart00812 Alpha_L_fucos Alpha 22.3 2.7E+02 0.0059 23.4 5.8 52 16-67 79-150 (384)
131 PRK08045 cystathionine gamma-s 22.2 3.4E+02 0.0075 22.6 6.4 55 15-70 122-179 (386)
132 COG1504 Uncharacterized conser 22.1 1.7E+02 0.0036 20.4 3.6 53 11-63 41-94 (121)
133 TIGR00506 ribB 3,4-dihydroxy-2 22.1 2.5E+02 0.0053 21.5 5.0 16 48-63 176-191 (199)
134 PRK02901 O-succinylbenzoate sy 22.0 2.1E+02 0.0045 23.5 5.0 48 18-67 194-241 (327)
135 PRK05339 PEP synthetase regula 22.0 4E+02 0.0087 21.4 6.3 43 19-63 44-88 (269)
136 cd03316 MR_like Mandelate race 21.7 2.8E+02 0.006 22.6 5.7 46 17-64 249-297 (357)
137 PRK08248 O-acetylhomoserine am 21.7 3.6E+02 0.0079 22.9 6.5 54 15-69 134-190 (431)
138 PRK07503 methionine gamma-lyas 21.6 3.3E+02 0.0071 22.8 6.2 51 18-69 138-191 (403)
139 PF02581 TMP-TENI: Thiamine mo 21.5 3.3E+02 0.0071 19.8 6.6 59 8-67 93-158 (180)
140 TIGR01858 tag_bisphos_ald clas 21.3 4E+02 0.0087 21.4 6.3 72 19-93 84-169 (282)
141 COG3737 Uncharacterized conser 21.3 2.4E+02 0.0051 19.9 4.3 51 19-69 56-107 (127)
142 PRK00014 ribB 3,4-dihydroxy-2- 21.3 2.2E+02 0.0048 22.3 4.6 16 48-63 191-206 (230)
143 PRK09856 fructoselysine 3-epim 21.0 4E+02 0.0086 20.5 7.7 19 49-67 94-112 (275)
144 PRK00910 ribB 3,4-dihydroxy-2- 20.9 2.4E+02 0.0053 21.9 4.8 16 48-63 187-202 (218)
145 PHA02128 hypothetical protein 20.8 2E+02 0.0043 19.8 3.8 63 2-64 67-150 (151)
146 TIGR00238 KamA family protein. 20.8 4.7E+02 0.01 21.4 8.1 36 48-87 240-275 (331)
147 PF05368 NmrA: NmrA-like famil 20.8 1.4E+02 0.0029 22.5 3.5 65 3-70 39-106 (233)
148 PRK08610 fructose-bisphosphate 20.7 2.9E+02 0.0062 22.4 5.4 72 19-93 89-172 (286)
149 PRK06943 adenosylmethionine--8 20.7 1.5E+02 0.0033 25.3 4.1 26 48-73 246-271 (453)
150 PRK13238 tnaA tryptophanase/L- 20.6 2.4E+02 0.0053 24.2 5.3 49 18-66 161-219 (460)
151 COG0436 Aspartate/tyrosine/aro 20.5 2.2E+02 0.0047 23.9 4.8 61 7-68 134-206 (393)
152 COG1038 PycA Pyruvate carboxyl 20.4 1.8E+02 0.004 27.4 4.5 46 19-66 68-113 (1149)
153 cd08556 GDPD Glycerophosphodie 20.4 3.3E+02 0.0071 19.4 6.6 28 3-30 84-111 (189)
154 KOG1184 Thiamine pyrophosphate 20.3 3E+02 0.0065 24.4 5.6 93 1-115 11-104 (561)
155 PF00875 DNA_photolyase: DNA p 20.3 2.2E+02 0.0048 20.3 4.4 63 4-67 62-126 (165)
156 cd08613 GDPD_GDE4_like_1 Glyce 20.2 2.7E+02 0.0057 22.8 5.1 51 35-85 237-291 (309)
157 COG0289 DapB Dihydrodipicolina 20.2 1.6E+02 0.0035 23.6 3.7 41 2-42 87-127 (266)
158 PRK13958 N-(5'-phosphoribosyl) 20.1 1.6E+02 0.0034 22.4 3.6 32 8-41 51-83 (207)
159 PRK01792 ribB 3,4-dihydroxy-2- 20.0 2.9E+02 0.0063 21.4 5.1 14 78-91 184-197 (214)
160 PLN02242 methionine gamma-lyas 20.0 2.3E+02 0.0051 23.9 5.0 51 19-69 151-204 (418)
161 TIGR02534 mucon_cyclo muconate 20.0 3E+02 0.0065 22.6 5.6 50 13-64 243-295 (368)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.8e-34 Score=226.51 Aligned_cols=140 Identities=44% Similarity=0.809 Sum_probs=134.9
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcH
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNP 80 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~ 80 (170)
|++++++||||+||||||+++.++++++..++.|+++|++||+..++.+++++|+++||.++||+||+.|+ .+++++
T Consensus 126 lE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~---~l~~~~ 202 (280)
T COG0656 126 LEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGG---KLLDNP 202 (280)
T ss_pred HHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccccc---ccccCh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999763 388999
Q ss_pred HHHHHHHHhCCCHHHHHHHhhhcCCCEEeecCCCHHHHHHhhcccCCCCCHHHHHhchhhhcc
Q 030851 81 IVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQE 143 (170)
Q Consensus 81 ~l~~~a~~~~~s~~qlal~~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 143 (170)
.+.++|++||.|++|++|+|.+++++++||.+++++|+++|+++.++.||++||+.|+++...
T Consensus 203 ~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~ 265 (280)
T COG0656 203 VLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRG 265 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999983
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=99.97 E-value=3.6e-31 Score=209.34 Aligned_cols=142 Identities=51% Similarity=0.899 Sum_probs=135.0
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcH
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNP 80 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~ 80 (170)
|++++++|++|+||||||+..++++++..++++|+++|+++++..++.+++++|+++||.|.||+||+.++....++.++
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~ 223 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDP 223 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCCccccccCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998875322468889
Q ss_pred HHHHHHHHhCCCHHHHHHHhhhcCCCEEeecCCCHHHHHHhhcccCCCCCHHHHHhchhhhc
Q 030851 81 IVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (170)
Q Consensus 81 ~l~~~a~~~~~s~~qlal~~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 142 (170)
.+.++|++|+.|++|++|||++++++++||.++|+++|+||++.+++.||++||+.|+....
T Consensus 224 ~l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~ 285 (300)
T KOG1577|consen 224 VLKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNS 285 (300)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999998877
No 3
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=99.97 E-value=8e-31 Score=207.84 Aligned_cols=138 Identities=30% Similarity=0.538 Sum_probs=129.5
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCC-CceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCc
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARI-PPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN 79 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~ 79 (170)
|++++++||||+||||||+++.++++.+..+. .++++|++||++++..+++++|+++||+|++|+||++| .++..
T Consensus 114 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G----~~~~~ 189 (267)
T PRK11172 114 LLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYG----KVLKD 189 (267)
T ss_pred HHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCC----cccCC
Confidence 57899999999999999999999999887664 68999999999998899999999999999999999887 56677
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhhcCCCEEeecCCCHHHHHHhhcccCCCCCHHHHHhchhhhc
Q 030851 80 PIVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (170)
Q Consensus 80 ~~l~~~a~~~~~s~~qlal~~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 142 (170)
+.+.++|+++|+|++|+||+|++++++++|+|+++++|+++|+++.+++||+++++.|+++.+
T Consensus 190 ~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~ 252 (267)
T PRK11172 190 PVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDR 252 (267)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhcc
Confidence 889999999999999999999999999999999999999999999999999999999999986
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=99.97 E-value=8.4e-30 Score=204.82 Aligned_cols=148 Identities=28% Similarity=0.417 Sum_probs=131.2
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCCCCCCCCC
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSAKNTHRVL 77 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~gg~~~~~~ 77 (170)
|.+++++|||||||+|+++.++|+++...+.+++.++|++||+++++ ++++++|++.||++++|+||++|-+.+++.
T Consensus 150 L~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~ 229 (336)
T KOG1575|consen 150 LTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYK 229 (336)
T ss_pred HHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcc
Confidence 46799999999999999999999999999988899999999999998 579999999999999999999872211110
Q ss_pred -------------------C----------cHHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccC
Q 030851 78 -------------------Q----------NPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFD 126 (170)
Q Consensus 78 -------------------~----------~~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~ 126 (170)
. -.++.++|+++|+|++|+||+|+++++ +++|||+++++||+||++|+.
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~ 309 (336)
T KOG1575|consen 230 LGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALS 309 (336)
T ss_pred cccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhh
Confidence 0 034788999999999999999999998 789999999999999999999
Q ss_pred CCCCHHHHHhchhhhccccccC
Q 030851 127 WYIPEDLLAKFPEIEQERLVKG 148 (170)
Q Consensus 127 ~~L~~~~~~~l~~~~~~~~~~~ 148 (170)
..||++++..|++....-...+
T Consensus 310 ~~Lt~e~~~~l~~~~~~~~~~~ 331 (336)
T KOG1575|consen 310 VKLTPEEIKELEEIIDKILGFG 331 (336)
T ss_pred ccCCHHHHHHHHHhhccccCcC
Confidence 9999999999999998766655
No 5
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.97 E-value=2.2e-29 Score=200.46 Aligned_cols=140 Identities=35% Similarity=0.685 Sum_probs=129.9
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcH
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNP 80 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~ 80 (170)
|++|+++|+||+||||||++++++++.+.+++.+.++|++|+++.+..+++++|+++||++++|+|+++|+ ...+..+
T Consensus 123 l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~--~~~~~~~ 200 (275)
T PRK11565 123 MIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGG--KGVFDQK 200 (275)
T ss_pred HHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCC--cccccCH
Confidence 57899999999999999999999999887778899999999999988899999999999999999998763 1245678
Q ss_pred HHHHHHHHhCCCHHHHHHHhhhcCCCEEeecCCCHHHHHHhhcccCCCCCHHHHHhchhhhc
Q 030851 81 IVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (170)
Q Consensus 81 ~l~~~a~~~~~s~~qlal~~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 142 (170)
.+.++|+++|+|++|+||||+++++.++|||+++++|+++|+++.+++||+++++.|+++..
T Consensus 201 ~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~ 262 (275)
T PRK11565 201 VIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQ 262 (275)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcc
Confidence 89999999999999999999999998999999999999999999999999999999999976
No 6
>PRK10376 putative oxidoreductase; Provisional
Probab=99.95 E-value=9.4e-28 Score=192.34 Aligned_cols=136 Identities=29% Similarity=0.420 Sum_probs=122.3
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc-HHHHHHHHHcCcceEEecCCCCCCCCCCCCCc
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN 79 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~ 79 (170)
|++|+++||||+||||||+++.++++.+.+ .+.++|++||++++. .+++++|+++||++++|+||+++ ..+..
T Consensus 150 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~----~~~~~ 223 (290)
T PRK10376 150 LAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGF----TPLQS 223 (290)
T ss_pred HHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCC----Chhhh
Confidence 578999999999999999999999988765 458999999999976 67999999999999999999643 33445
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCCCCCHHHHHhchhhhc
Q 030851 80 PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (170)
Q Consensus 80 ~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 142 (170)
+.+.++|++++++++|+||+|+++++ +++|+|++|++|+++|+++.+++|++++++.|+++.+
T Consensus 224 ~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 224 STLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 78999999999999999999999884 6789999999999999999999999999999998754
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=99.95 E-value=1.9e-27 Score=194.83 Aligned_cols=143 Identities=25% Similarity=0.367 Sum_probs=121.4
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHh---cCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCCCCCC
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEI---ARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSAKNTH 74 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~---~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~gg~~~ 74 (170)
|++|+++||||+||||||++++++++.+. ...++.++|++||++++. .+++++|+++||++++|+||++|-+.+
T Consensus 153 l~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~ 232 (346)
T PRK09912 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTG 232 (346)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccC
Confidence 57899999999999999999998866543 345779999999999985 479999999999999999998862221
Q ss_pred CC-------------------C-----Cc------HHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhh
Q 030851 75 RV-------------------L-----QN------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENF 122 (170)
Q Consensus 75 ~~-------------------~-----~~------~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl 122 (170)
.+ + .. +.+.++|+++|+|++|+||+|++++| +++|||+++++||++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~ 312 (346)
T PRK09912 233 KYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENV 312 (346)
T ss_pred CCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 10 0 00 45677899999999999999999998 67899999999999999
Q ss_pred cccC-CCCCHHHHHhchhhhcc
Q 030851 123 DIFD-WYIPEDLLAKFPEIEQE 143 (170)
Q Consensus 123 ~a~~-~~L~~~~~~~l~~~~~~ 143 (170)
++.. .+||+++++.|+++.+.
T Consensus 313 ~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 313 QALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred hhhcCCCCCHHHHHHHHHhhCc
Confidence 9984 89999999999998753
No 8
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.95 E-value=5.2e-28 Score=192.39 Aligned_cols=141 Identities=36% Similarity=0.550 Sum_probs=117.1
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEEecCCCCCCCCCCC--
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRV-- 76 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l~~gg~~~~~-- 76 (170)
|++|+++|+||+||||||+++.++++.....++|+++|++||++++. .+++++|+++||++++++|+++|.+.+..
T Consensus 122 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~ 201 (283)
T PF00248_consen 122 LEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKS 201 (283)
T ss_dssp HHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTT
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCcccccccc
Confidence 57899999999999999999999999777888999999999999443 79999999999999999999887322111
Q ss_pred --------------CCcHHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCCCCCHHHHHhchhh
Q 030851 77 --------------LQNPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEI 140 (170)
Q Consensus 77 --------------~~~~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~ 140 (170)
...+.+.+++++++.+++|+|++|+++++ .++|+|+++++|+++|+++.+.+||+++++.|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~ 281 (283)
T PF00248_consen 202 PPPPPSRASLRDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQI 281 (283)
T ss_dssp TTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTT
T ss_pred CCCcccccccchhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 22367899999999999999999999875 78999999999999999999999999999999987
Q ss_pred h
Q 030851 141 E 141 (170)
Q Consensus 141 ~ 141 (170)
.
T Consensus 282 ~ 282 (283)
T PF00248_consen 282 L 282 (283)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=99.95 E-value=1.8e-27 Score=192.83 Aligned_cols=140 Identities=26% Similarity=0.397 Sum_probs=118.9
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcC----CCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCCCCC
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIAR----IPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSAKNT 73 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~----~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~gg~~ 73 (170)
|++|+++||||+||+|||+++++.++...+. +.++++|++||++++. .+++++|+++||++++|+||++|-+.
T Consensus 135 L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt 214 (317)
T TIGR01293 135 MTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS 214 (317)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC
Confidence 5789999999999999999999988765433 5788999999999986 37999999999999999999886211
Q ss_pred CCC-----------------CC-----c---------HHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHH
Q 030851 74 HRV-----------------LQ-----N---------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKE 120 (170)
Q Consensus 74 ~~~-----------------~~-----~---------~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~e 120 (170)
+++ +. . +.+.++|+++|++++|+|++|++++| +++|+|+++++|+++
T Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~e 294 (317)
T TIGR01293 215 GKYDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLME 294 (317)
T ss_pred CCCCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHH
Confidence 111 00 0 35778899999999999999999997 478999999999999
Q ss_pred hhcccCC--CCCHHHHHhchhh
Q 030851 121 NFDIFDW--YIPEDLLAKFPEI 140 (170)
Q Consensus 121 nl~a~~~--~L~~~~~~~l~~~ 140 (170)
|+++++. +||+++++.|+++
T Consensus 295 n~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 295 NLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHhhccCCCCHHHHHHHHhh
Confidence 9999986 9999999999874
No 10
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=99.95 E-value=4.2e-27 Score=190.51 Aligned_cols=141 Identities=33% Similarity=0.505 Sum_probs=123.9
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEEecCCCCC---CCCCC
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSA---KNTHR 75 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l~~g---g~~~~ 75 (170)
|++|+++||||++|+||++.+++.++.+.+ .+++++|.+||++++. .+++++|+++||++++|+|+++| |++..
T Consensus 141 L~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 141 LDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 578999999999999999999999998876 6779999999999976 46999999999999999999998 32211
Q ss_pred -----------CCCc----------HHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCCCCCHH
Q 030851 76 -----------VLQN----------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPED 132 (170)
Q Consensus 76 -----------~~~~----------~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~ 132 (170)
.+.. ..+.++|+++|+|++|+||+|++++| +++|+|+++++||++|++|++..|+++
T Consensus 220 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~ 299 (316)
T COG0667 220 GPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEE 299 (316)
T ss_pred CcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHH
Confidence 1111 34788999999999999999999998 689999999999999999999999999
Q ss_pred HHHhchhhhc
Q 030851 133 LLAKFPEIEQ 142 (170)
Q Consensus 133 ~~~~l~~~~~ 142 (170)
+++.|+....
T Consensus 300 ~~~~l~~~~~ 309 (316)
T COG0667 300 ELAALDEISA 309 (316)
T ss_pred HHHHHHHHhh
Confidence 9998887765
No 11
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=99.95 E-value=4.6e-27 Score=192.50 Aligned_cols=142 Identities=25% Similarity=0.265 Sum_probs=121.0
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhc---C-CCceEeccccCccCCc--HHHHHHHHHcCcceEEecCCCCCCCCC
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIA---R-IPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTH 74 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~---~-~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l~~gg~~~ 74 (170)
|++|+++||||+||+|||+.+.+.++...+ . ..+.++|++||++++. .+++++|+++||++++|+||++|-+.+
T Consensus 164 L~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg 243 (346)
T PRK10625 164 LAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTG 243 (346)
T ss_pred HHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccC
Confidence 578999999999999999999988776532 2 3578999999999876 589999999999999999998862111
Q ss_pred C-------------CCC-------------cHHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccC
Q 030851 75 R-------------VLQ-------------NPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFD 126 (170)
Q Consensus 75 ~-------------~~~-------------~~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~ 126 (170)
+ .++ ...+.++|+++|++++|+||+|++++| +++|+|+++++||++|+++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~ 323 (346)
T PRK10625 244 KYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLH 323 (346)
T ss_pred CCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhcc
Confidence 1 111 145788999999999999999999998 358999999999999999999
Q ss_pred CCCCHHHHHhchhhhc
Q 030851 127 WYIPEDLLAKFPEIEQ 142 (170)
Q Consensus 127 ~~L~~~~~~~l~~~~~ 142 (170)
++||+++++.|+++.+
T Consensus 324 ~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 324 LTLSEEVLAEIEAVHQ 339 (346)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999864
No 12
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.95 E-value=1.2e-26 Score=184.74 Aligned_cols=139 Identities=42% Similarity=0.645 Sum_probs=123.5
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCcH--HHHHHHHHcCcceEEecCCCCCCCCCCCCC
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQT--KLQAFCKSKGVHLSGYSPLGSAKNTHRVLQ 78 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~--~~~~~~~~~gi~via~~~l~~gg~~~~~~~ 78 (170)
|+++|++|+||+||||+|+++.+.++.+.+..+|+++|++||++++.. +++++|+++||+|++++||++|-+..+...
T Consensus 133 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~ 212 (285)
T cd06660 133 LEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLP 212 (285)
T ss_pred HHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCC
Confidence 689999999999999999999999999888789999999999999985 599999999999999999988622211111
Q ss_pred ---------cHHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCCCCCHHHHHhchh
Q 030851 79 ---------NPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPE 139 (170)
Q Consensus 79 ---------~~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~ 139 (170)
...+..++.+++++++|+|++|++++| +++|+|+++++|+++|+++...+||+++++.|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 213 GAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred CCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 145778999999999999999999996 6889999999999999999999999999999876
No 13
>PLN02587 L-galactose dehydrogenase
Probab=99.93 E-value=4.6e-25 Score=178.54 Aligned_cols=142 Identities=23% Similarity=0.279 Sum_probs=117.7
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcC---CCceEeccccCccCCc-HHHHHHHHHcCcceEEecCCCCCCCCCC-
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIAR---IPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSPLGSAKNTHR- 75 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~---~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~via~~~l~~gg~~~~- 75 (170)
|++|+++||||+||+|||+++++..+.+... +.+.++|+.||+.++. .+++++|+++||++++|+||++|-+.++
T Consensus 137 l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~ 216 (314)
T PLN02587 137 LQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENG 216 (314)
T ss_pred HHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCC
Confidence 6789999999999999999998887765432 3456678999988765 6899999999999999999988622211
Q ss_pred --CCC--c-------HHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccC----CCCCHHHHHhch
Q 030851 76 --VLQ--N-------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFD----WYIPEDLLAKFP 138 (170)
Q Consensus 76 --~~~--~-------~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~----~~L~~~~~~~l~ 138 (170)
.+. . ..+.++|+++++|++|+||+|++++| +++|+|+++++|+++|++++. .+|+++++++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~ 296 (314)
T PLN02587 217 PPEWHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVE 296 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHH
Confidence 111 1 24667899999999999999999998 568999999999999999976 379999999999
Q ss_pred hhhc
Q 030851 139 EIEQ 142 (170)
Q Consensus 139 ~~~~ 142 (170)
++..
T Consensus 297 ~~~~ 300 (314)
T PLN02587 297 AILA 300 (314)
T ss_pred Hhhc
Confidence 8886
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.93 E-value=2.5e-25 Score=178.51 Aligned_cols=140 Identities=19% Similarity=0.091 Sum_probs=116.8
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCCCCCCC--
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSAKNTHR-- 75 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~gg~~~~-- 75 (170)
|++|+++||||+||||||+++++.++.. ..+|+++|++||++++. .+++++|+++||++++|+||++|.++.+
T Consensus 127 l~~l~~~Gkir~iGvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~ 204 (292)
T PRK14863 127 LQALKDQGLFAKIGVSAHASDDPVGVAR--RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD 204 (292)
T ss_pred HHHHHHcCCcceEeeeccCHHHHHHHHh--cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc
Confidence 5789999999999999999999888754 34789999999999986 3699999999999999999998733311
Q ss_pred ----CCC-----cHHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCCCCCHHHHHhchhhhc
Q 030851 76 ----VLQ-----NPIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (170)
Q Consensus 76 ----~~~-----~~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 142 (170)
.+. -..+.+++++.+++++|+||+|++++| +++|+|+++++|+++|+++.+.++++..+++|..-..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~~ 282 (292)
T PRK14863 205 RVPAQLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDDP 282 (292)
T ss_pred cCccchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCChh
Confidence 011 134556777889999999999999998 6789999999999999999998899888777765443
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=166.95 Aligned_cols=142 Identities=22% Similarity=0.290 Sum_probs=126.8
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCCCCCCCCC
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSAKNTHRVL 77 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~gg~~~~~~ 77 (170)
|..|+++||+|++|||||+|.+++-+..........+|+++|+++.. .+.+++|+++.|.+++||||++|+.|....
T Consensus 142 f~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~ 221 (298)
T COG4989 142 FTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDD 221 (298)
T ss_pred HHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCc
Confidence 46899999999999999999999999999988999999999999987 689999999999999999999985443211
Q ss_pred C----cHHHHHHHHHhC-CCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCCCCCHHHHHhchhhhc
Q 030851 78 Q----NPIVNTVAEKLG-KSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPEDLLAKFPEIEQ 142 (170)
Q Consensus 78 ~----~~~l~~~a~~~~-~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 142 (170)
+ ...+..+|.++| .+..+++++|++.+| ..+|+|+.|+++|++.++|.+..||.++|-+|..+..
T Consensus 222 ~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 222 KFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred chHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 1 156788999999 799999999999999 4689999999999999999999999999999987764
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.88 E-value=3.3e-22 Score=160.88 Aligned_cols=136 Identities=24% Similarity=0.277 Sum_probs=120.5
Q ss_pred ChhHhhcCCccEEEecCC-cHHHHHHHHHhcCCCceEeccccCccCCc----HHHHHHHHHcCcceEEecCCCCCCCCCC
Q 030851 1 MEALYDSGKARAIGVSNF-SLKKLGDLLEIARIPPAVNQVECHPAWQQ----TKLQAFCKSKGVHLSGYSPLGSAKNTHR 75 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~-~~~~i~~~~~~~~~~~~~~q~~~n~~~~~----~~~~~~~~~~gi~via~~~l~~gg~~~~ 75 (170)
++++|++||||++|+|.| +++.+.+++.... ++++|++||++++. .+.+++|.++|++|+.++|+.+| .
T Consensus 136 ~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG----~ 209 (391)
T COG1453 136 LEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGG----G 209 (391)
T ss_pred HHHHHhcCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCC----C
Confidence 478999999999999999 4688889988776 69999999999986 38999999999999999999887 4
Q ss_pred CCC--cHHHHHHHHHhC--CCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccC--CC-CCHHHHHhchhhhc
Q 030851 76 VLQ--NPIVNTVAEKLG--KSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFD--WY-IPEDLLAKFPEIEQ 142 (170)
Q Consensus 76 ~~~--~~~l~~~a~~~~--~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~--~~-L~~~~~~~l~~~~~ 142 (170)
++. ++++.+++++++ .||+.+|+||++++| +++++|+++++|++|||+.++ .| ||++|++.|.++.+
T Consensus 210 l~~~vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~ 285 (391)
T COG1453 210 LLYNVPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEE 285 (391)
T ss_pred cccCCCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHH
Confidence 444 488999999875 589999999999999 678999999999999999986 34 99999999998887
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.71 E-value=1.3e-16 Score=124.16 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=110.4
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEec--cccCccCCc-HHHHHHHHHcCcceEEecCCCCCCCC----
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQ--VECHPAWQQ-TKLQAFCKSKGVHLSGYSPLGSAKNT---- 73 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q--~~~n~~~~~-~~~~~~~~~~gi~via~~~l~~gg~~---- 73 (170)
|+++|++||||+||+|.++.+.+.++++......+++- ++|++.+.. -..+++.+.+|++|++.++++.| ++
T Consensus 163 Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsmg-LLt~~g 241 (342)
T KOG1576|consen 163 LEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMG-LLTNQG 241 (342)
T ss_pred HHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHH-HhhcCC
Confidence 68999999999999999999999999988777777777 666666554 47788888999999999999886 22
Q ss_pred CCCCCc---------HHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCCCCCH-HHHHhchhh
Q 030851 74 HRVLQN---------PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDWYIPE-DLLAKFPEI 140 (170)
Q Consensus 74 ~~~~~~---------~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~-~~~~~l~~~ 140 (170)
++-..+ .+-.+.|++.|++...+|++|+++.+ +++++|++|.++++.|+++..-.||. ++...+.-+
T Consensus 242 p~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~ 320 (342)
T KOG1576|consen 242 PPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRIL 320 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHH
Confidence 222222 33455678889999999999999987 78999999999999999986667877 333333333
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.34 E-value=7.5e-07 Score=68.81 Aligned_cols=67 Identities=31% Similarity=0.441 Sum_probs=62.9
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc-HHHHHHHHHcCcceEEecCC
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~via~~~l 67 (170)
||+++.+|+|..+|||.|+..++++++..+.+.|..+|+++.-++.- +++.++|.+++|.++..+.-
T Consensus 162 LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 162 LEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 68999999999999999999999999999999999999999988865 89999999999999998766
No 19
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=93.95 E-value=0.6 Score=36.99 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=67.6
Q ss_pred hhcCCccEEEe-cCCcHHHHHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHH
Q 030851 5 YDSGKARAIGV-SNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPI 81 (170)
Q Consensus 5 ~~~G~Ir~iGv-S~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~ 81 (170)
.++|+. -+|+ .......+.+++...+.++.++-++..+++.. ..++..|+..|+..+++.|-..-
T Consensus 14 l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~----------- 81 (256)
T PRK10558 14 LAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEP----------- 81 (256)
T ss_pred HHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCH-----------
Confidence 345764 3444 23333455566667789999999999988876 68999999999999998877431
Q ss_pred HHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCC
Q 030851 82 VNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDW 127 (170)
Q Consensus 82 l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 127 (170)
..++.++..| .+++|-+.|.++.++.+++..+
T Consensus 82 --------------~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 82 --------------VIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------HHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 2345556666 3567777777777777777665
No 20
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=93.12 E-value=1.2 Score=35.57 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=67.9
Q ss_pred hhcCCccEEEe-cCCcHHHHHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHH
Q 030851 5 YDSGKARAIGV-SNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPI 81 (170)
Q Consensus 5 ~~~G~Ir~iGv-S~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~ 81 (170)
.++|... +|+ .......+.+++...++++.++-++..+++.. ..++..++..|+..+++.|-..
T Consensus 13 L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~------------ 79 (267)
T PRK10128 13 LRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS------------ 79 (267)
T ss_pred HHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC------------
Confidence 3457653 443 33333445555566779999999999988876 5789999999999999887522
Q ss_pred HHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCC
Q 030851 82 VNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDW 127 (170)
Q Consensus 82 l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 127 (170)
+ ..++.+|..| .+++|-+.|.++.++.+++..+
T Consensus 80 -----------~--~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 -----------K--PLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred -----------H--HHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 1 3456677776 4667777888888888777765
No 21
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=92.84 E-value=1.2 Score=35.04 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=65.9
Q ss_pred hhcCCccEEEe-cCCcHHHHHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHH
Q 030851 5 YDSGKARAIGV-SNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPI 81 (170)
Q Consensus 5 ~~~G~Ir~iGv-S~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~ 81 (170)
.++|+. -+|+ ++.....+.+++...++++.++-++..+++.. ..++..++..|+..+++.|-..-
T Consensus 7 l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~----------- 74 (249)
T TIGR03239 7 LLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEP----------- 74 (249)
T ss_pred HHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCH-----------
Confidence 345664 3443 33333455555666789999999999988876 68999999999999998876321
Q ss_pred HHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCC
Q 030851 82 VNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDW 127 (170)
Q Consensus 82 l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 127 (170)
..++.+|..+ .+++|-+.|.++.++.+++..+
T Consensus 75 --------------~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 75 --------------VIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred --------------HHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 2344555555 3566777777777777766654
No 22
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=90.66 E-value=0.15 Score=42.42 Aligned_cols=52 Identities=10% Similarity=0.159 Sum_probs=35.3
Q ss_pred CCccEEEecCCcHHHHHHHHHhcCCCceEeccccC-ccCC-cHHHHHHHHHcCcc
Q 030851 8 GKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECH-PAWQ-QTKLQAFCKSKGVH 60 (170)
Q Consensus 8 G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n-~~~~-~~~~~~~~~~~gi~ 60 (170)
|+|||+||--++.+.+.++....+.+ +..+.+.. .+++ ++.+++.+++.||+
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~~~e~-dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAASTENEK-DLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcCccHH-HHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 89999999999999999987654421 33333333 2233 36777777777764
No 23
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=90.28 E-value=3.8 Score=32.25 Aligned_cols=99 Identities=10% Similarity=0.016 Sum_probs=66.5
Q ss_pred hHhhcCCcc-EEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEEecCCCCCCCCCCCCCc
Q 030851 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN 79 (170)
Q Consensus 3 ~l~~~G~Ir-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~ 79 (170)
+..++|+.. -+.++..++..++.+ ...+.++.++-++.+.++.. ..++..++..|+.++++.|-..
T Consensus 5 ~~l~~g~~~~g~~~~~~~p~~~e~~-~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~---------- 73 (249)
T TIGR02311 5 QALKEGQPQIGLWLGLADPYAAEIC-AGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD---------- 73 (249)
T ss_pred HHHHCCCceEEEEEeCCCcHHHHHH-HhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC----------
Confidence 344567752 233344455555554 55678889999998887655 4678888888999998865522
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhhcCC--CEEeecCCCHHHHHHhhcccCC
Q 030851 80 PIVNTVAEKLGKSPAQVALRWGLQMG--HSVLPKSANEARLKENFDIFDW 127 (170)
Q Consensus 80 ~~l~~~a~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 127 (170)
+ ..++.++..+ .+++|-+.+++++++.++++.+
T Consensus 74 -------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1456677776 4678888888888888887764
No 24
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=80.50 E-value=4.2 Score=32.62 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCC
Q 030851 17 NFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 17 ~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~ 69 (170)
-|+..++.++.+..++...++-+.||+-+. ++.++|.+.|+.+++.-|+..
T Consensus 200 lhD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 200 LHDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hhHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 367778888889999999999999965554 899999999999999999854
No 25
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=78.96 E-value=18 Score=29.19 Aligned_cols=105 Identities=11% Similarity=0.091 Sum_probs=67.2
Q ss_pred CccEEEecCCcHHHHHHHHHhcCCCceEeccccCccC-----CcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHH
Q 030851 9 KARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW-----QQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVN 83 (170)
Q Consensus 9 ~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~-----~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~ 83 (170)
++-.+-=++.+.+.+.++.+....++.-+.+ +|-++ ++..+.+++.+.++-++.-+.-++ +..+|.
T Consensus 158 kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss--------NT~rL~ 228 (281)
T PRK12360 158 KACVVAQTTIIPELWEDILNVIKLKSKELVF-FNTICSATKKRQESAKELSKEVDVMIVIGGKHSS--------NTQKLV 228 (281)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHhCccccc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc--------cHHHHH
Confidence 3444444557777777666554432222222 33222 225789999999988887333322 247899
Q ss_pred HHHHHhCC------CHHHHHHHhhhcCC-CEEeecCCCHHHHHHhh
Q 030851 84 TVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKENF 122 (170)
Q Consensus 84 ~~a~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~enl 122 (170)
++|.+.+. ++.++-..|..... +-+..|+|+|+.+-+.+
T Consensus 229 eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 229 KICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 99998863 56778788988766 45677999998775544
No 26
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=78.47 E-value=17 Score=29.48 Aligned_cols=107 Identities=12% Similarity=0.128 Sum_probs=68.1
Q ss_pred CCccEEEecCCcHHHHHHHHHhcCCCceEecc-ccC-ccC----CcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHH
Q 030851 8 GKARAIGVSNFSLKKLGDLLEIARIPPAVNQV-ECH-PAW----QQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPI 81 (170)
Q Consensus 8 G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~-~~n-~~~----~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~ 81 (170)
.++-.+-=++.+.+.+.++.+....++.-+-+ .+| +++ ++..+.+++++.++-++.-+.-++ +..+
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss--------NT~k 227 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS--------NSNR 227 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc--------cHHH
Confidence 34555555567777777666554432211111 223 222 225789999999988888333322 2478
Q ss_pred HHHHHHHhCC------CHHHHHHHhhhcCC-CEEeecCCCHHHHHHhh
Q 030851 82 VNTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKENF 122 (170)
Q Consensus 82 l~~~a~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~enl 122 (170)
|.++|++.+. +..++-..|..... +-+..|+|+|+.+-+.+
T Consensus 228 L~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 228 LREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 9999998763 56788888987665 45777999998765544
No 27
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=75.85 E-value=22 Score=28.67 Aligned_cols=106 Identities=8% Similarity=0.097 Sum_probs=67.8
Q ss_pred CCccEEEecCCcHHHHHHHHHhcCCCc--eEeccccC-ccC----CcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcH
Q 030851 8 GKARAIGVSNFSLKKLGDLLEIARIPP--AVNQVECH-PAW----QQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNP 80 (170)
Q Consensus 8 G~Ir~iGvS~~~~~~i~~~~~~~~~~~--~~~q~~~n-~~~----~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~ 80 (170)
.++-.+-=++.+.+.+.++.+....++ .-+. .+| +++ ++..+.+++.+-++-++.-+.-++ +..
T Consensus 154 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~-~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs--------NT~ 224 (280)
T TIGR00216 154 DLLGVVSQTTLSQEDTKEIVAELKARVPQKEVP-VFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS--------NTT 224 (280)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCC-CCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc--------hHH
Confidence 445555555677777776665544322 1111 123 222 226799999999988887333322 248
Q ss_pred HHHHHHHHhCC------CHHHHHHHhhhcCC-CEEeecCCCHHHHHHhh
Q 030851 81 IVNTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKENF 122 (170)
Q Consensus 81 ~l~~~a~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~enl 122 (170)
+|.++|++.+. +..++-..|..... +-+..|+|+|+.+-+.+
T Consensus 225 rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 225 RLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 89999998873 56788888887766 45677999998775543
No 28
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=75.62 E-value=11 Score=28.61 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=54.1
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc-------HHHHHHHHHcCcceEEecCCCCC
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ-------TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~-------~~~~~~~~~~gi~via~~~l~~g 70 (170)
|+++.+=|+---|++.||.-+...--+-..+--|..-.++|+-.+.+ .+..++|++.|+.|.-..++..+
T Consensus 95 L~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 95 LEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred HHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 46777888888899999988777655443444556677888755543 69999999999999999999775
No 29
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=74.41 E-value=23 Score=28.60 Aligned_cols=108 Identities=11% Similarity=0.119 Sum_probs=72.1
Q ss_pred CccEEEecCCcHHHHHHHHHhcCCCceEeccccC--ccC----CcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHH
Q 030851 9 KARAIGVSNFSLKKLGDLLEIARIPPAVNQVECH--PAW----QQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIV 82 (170)
Q Consensus 9 ~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n--~~~----~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l 82 (170)
++-++-=++-+.+..+++.+....++-.+|.+.. +++ ++..+.+++.+-++-++.-++-++. ..+|
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSN--------s~rL 230 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSN--------SNRL 230 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCcc--------HHHH
Confidence 3333333446667776666665554444444432 333 2357888888889888886666543 6899
Q ss_pred HHHHHHhCC------CHHHHHHHhhhcCC-CEEeecCCCHHHHHHhhcc
Q 030851 83 NTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKENFDI 124 (170)
Q Consensus 83 ~~~a~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~enl~a 124 (170)
.++|++.|. ++.++=..|..... +.+-.|+|.|+.|-+++-.
T Consensus 231 ~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~ 279 (294)
T COG0761 231 AEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIA 279 (294)
T ss_pred HHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHH
Confidence 999999885 45666777887765 3456699999988877643
No 30
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=67.43 E-value=47 Score=26.01 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHhcCCCceEec--cccCccCCc-----HHHHHHHHHcCcceEEecCCCCCCCCCCCCCc-------HHHH
Q 030851 18 FSLKKLGDLLEIARIPPAVNQ--VECHPAWQQ-----TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN-------PIVN 83 (170)
Q Consensus 18 ~~~~~i~~~~~~~~~~~~~~q--~~~n~~~~~-----~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~-------~~l~ 83 (170)
.++.+++.+.+.+++.+..+. .+||.++.. .+++.+++.-|-.-+.+.|+..|..-+..... +.++
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLk 128 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALK 128 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhh
Confidence 457788888888887655443 245666544 58999999999999999999886211111111 4566
Q ss_pred HHHHHhCC
Q 030851 84 TVAEKLGK 91 (170)
Q Consensus 84 ~~a~~~~~ 91 (170)
.+.+++|+
T Consensus 129 pil~~~gi 136 (272)
T COG4130 129 PILDEYGI 136 (272)
T ss_pred HHHHHhCc
Confidence 66666654
No 31
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=65.09 E-value=25 Score=28.37 Aligned_cols=107 Identities=12% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCccEEEecCCcHHHHHHHHHhcCC-CceEeccccCccCC-----cHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHH
Q 030851 8 GKARAIGVSNFSLKKLGDLLEIARI-PPAVNQVECHPAWQ-----QTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPI 81 (170)
Q Consensus 8 G~Ir~iGvS~~~~~~i~~~~~~~~~-~~~~~q~~~n~~~~-----~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~ 81 (170)
.++-.+.=++++.+.+.++.+.... .+......+|-++. +..+.+++++-++-++.-+.-++ +..+
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss--------NT~k 226 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS--------NTRK 226 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H--------HHHH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc--------cHHH
Confidence 4677777778888877776655442 22333234443333 25788888888987777222211 2378
Q ss_pred HHHHHHHhCC------CHHHHHHHhhhcCC-CEEeecCCCHHHHHHhh
Q 030851 82 VNTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKENF 122 (170)
Q Consensus 82 l~~~a~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~enl 122 (170)
|.++|++.+. ++.++-..|..... +-+..|+|+|+.+-+.+
T Consensus 227 L~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 227 LAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 9999999873 56788888988876 55777999998876654
No 32
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=62.77 E-value=43 Score=22.30 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=52.1
Q ss_pred Hhhc-CCccEEEecCCcHHHHHHHHHhcCCC-------------ceEeccccCccCCcHHHHHHHHHcCcceEEecCCCC
Q 030851 4 LYDS-GKARAIGVSNFSLKKLGDLLEIARIP-------------PAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 4 l~~~-G~Ir~iGvS~~~~~~i~~~~~~~~~~-------------~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~ 69 (170)
+.+. ..++-+|+++-+++..+++.+..+.. ++++-+- ++.....++...|.+.|+.|++=+|++.
T Consensus 19 ~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~-tp~~~h~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 19 LLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIA-TPPSSHAEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp HHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEE-SSGGGHHHHHHHHHHTTSEEEEESSSSS
T ss_pred HHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEe-cCCcchHHHHHHHHHcCCEEEEEcCCcC
Confidence 4444 66778899998888877765555431 1111111 1111226899999999999999999965
Q ss_pred CCCCCCCCCcHHHHHHHHHhCC
Q 030851 70 AKNTHRVLQNPIVNTVAEKLGK 91 (170)
Q Consensus 70 gg~~~~~~~~~~l~~~a~~~~~ 91 (170)
.+-+-.++.+.+++.+.
T Consensus 98 -----~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 98 -----TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp -----SHHHHHHHHHHHHHHTS
T ss_pred -----CHHHHHHHHHHHHHhCC
Confidence 23334666667776654
No 33
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=61.10 E-value=50 Score=26.40 Aligned_cols=52 Identities=23% Similarity=0.140 Sum_probs=35.0
Q ss_pred CceEeccccCccCCc--HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 030851 33 PPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK 91 (170)
Q Consensus 33 ~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~~ 91 (170)
-|.+++.-||+..+. ...++.|++.|+-=+.---| +......+.+.|+++|+
T Consensus 95 ~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL-------P~ee~~~~~~~~~~~gi 148 (265)
T COG0159 95 VPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL-------PPEESDELLKAAEKHGI 148 (265)
T ss_pred CCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC-------ChHHHHHHHHHHHHcCC
Confidence 478888889987765 57889999998765553333 22334556666666664
No 34
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=57.54 E-value=42 Score=23.74 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCcceEEecCCC
Q 030851 48 TKLQAFCKSKGVHLSGYSPLG 68 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~ 68 (170)
.++++.|++.||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 699999999999999999985
No 35
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=57.37 E-value=59 Score=29.32 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=66.5
Q ss_pred CCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccC-----CcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHH
Q 030851 8 GKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW-----QQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIV 82 (170)
Q Consensus 8 G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~-----~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l 82 (170)
.++-.+-=++.+.+.+.++.+....++.-+.+ +|-++ ++..+.++|.+.++-++.-+.-++ +..+|
T Consensus 154 ~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~-~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~Ss--------Nt~~L 224 (647)
T PRK00087 154 KKICVVSQTTEKQENFEKVLKELKKKGKEVKV-FNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSS--------NTTKL 224 (647)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc-CCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCc--------cHHHH
Confidence 34445555567777776666554422222222 33222 226799999999988887333322 24789
Q ss_pred HHHHHHhCC------CHHHHHHHhhhcCC-CEEeecCCCHHHHHHh
Q 030851 83 NTVAEKLGK------SPAQVALRWGLQMG-HSVLPKSANEARLKEN 121 (170)
Q Consensus 83 ~~~a~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~en 121 (170)
.++|++.+. ++.++-..|..... +-+..|+|+|+.+-+.
T Consensus 225 ~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 225 YEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred HHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 999998863 56778888887766 4567799999866444
No 36
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=57.13 E-value=87 Score=25.52 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=40.5
Q ss_pred hhHhhcCCccEEEecC---------CcHHHHHHHHHhcCCCceEeccccCccCC---c-HHHHHHHHHcCcceEEecCCC
Q 030851 2 EALYDSGKARAIGVSN---------FSLKKLGDLLEIARIPPAVNQVECHPAWQ---Q-TKLQAFCKSKGVHLSGYSPLG 68 (170)
Q Consensus 2 ~~l~~~G~Ir~iGvS~---------~~~~~i~~~~~~~~~~~~~~q~~~n~~~~---~-~~~~~~~~~~gi~via~~~l~ 68 (170)
+.+++-|.++.+.+.+ .+.+.+..+.+.. . ...+.++.|.... . ...++.+++.||.+....++.
T Consensus 160 ~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g-~-~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl 237 (321)
T TIGR03822 160 ARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSG-K-TVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLL 237 (321)
T ss_pred HHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcC-C-cEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEe
Confidence 4566777776455533 3445555554433 2 2445555542211 1 478888889999999999887
Q ss_pred CC
Q 030851 69 SA 70 (170)
Q Consensus 69 ~g 70 (170)
.|
T Consensus 238 ~g 239 (321)
T TIGR03822 238 RG 239 (321)
T ss_pred CC
Confidence 76
No 37
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=56.94 E-value=18 Score=29.81 Aligned_cols=66 Identities=18% Similarity=0.339 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhCCCHHH---------HHHHhhhcCC--CEEeecCCCHH
Q 030851 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQ---------VALRWGLQMG--HSVLPKSANEA 116 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~q---------lal~~~l~~~--~~~i~g~~~~~ 116 (170)
..+.++|++.||.+++ +|+ ....+. +..++++...+ -.|+.+-+.+ +..=.|+++.+
T Consensus 79 ~~L~~~~~~~Gi~~~s-tpf----------d~~svd-~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~ 146 (329)
T TIGR03569 79 RELKEYCESKGIEFLS-TPF----------DLESAD-FLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLE 146 (329)
T ss_pred HHHHHHHHHhCCcEEE-EeC----------CHHHHH-HHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHH
Confidence 5799999999999998 333 333332 22334432211 2355555554 33334888888
Q ss_pred HHHHhhccc
Q 030851 117 RLKENFDIF 125 (170)
Q Consensus 117 ~l~enl~a~ 125 (170)
++.+.++.+
T Consensus 147 Ei~~Av~~i 155 (329)
T TIGR03569 147 EIEAAVGVL 155 (329)
T ss_pred HHHHHHHHH
Confidence 888877654
No 38
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=54.09 E-value=43 Score=24.19 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=46.5
Q ss_pred EEEecCCc--HHHHHHHHHhcCCCceEeccccCccCCc-HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHH
Q 030851 12 AIGVSNFS--LKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEK 88 (170)
Q Consensus 12 ~iGvS~~~--~~~i~~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~ 88 (170)
-+|...|+ ...+.+++..+++ +++- ..+.+. .+.+..+.++++.++..|.+.++ ....-+.+.+.+++
T Consensus 19 k~GlDgHd~gakvia~~l~d~Gf--eVi~---~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~----h~~l~~~lve~lre 89 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGF--EVIN---LGLFQTPEEAVRAAVEEDVDVIGVSSLDGG----HLTLVPGLVEALRE 89 (143)
T ss_pred ccCccccccchHHHHHHHHhCCc--eEEe---cCCcCCHHHHHHHHHhcCCCEEEEEeccch----HHHHHHHHHHHHHH
Confidence 35777775 5778888877765 4433 323333 68999999999999999999876 32223455555555
Q ss_pred hC
Q 030851 89 LG 90 (170)
Q Consensus 89 ~~ 90 (170)
.|
T Consensus 90 ~G 91 (143)
T COG2185 90 AG 91 (143)
T ss_pred hC
Confidence 44
No 39
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=53.85 E-value=13 Score=29.18 Aligned_cols=65 Identities=17% Similarity=0.351 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhCC----------CHHHHHHHhhhcCC--CEEeecCCCH
Q 030851 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK----------SPAQVALRWGLQMG--HSVLPKSANE 115 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~~----------s~~qlal~~~l~~~--~~~i~g~~~~ 115 (170)
..+.++|+++||.+++ +|+ ..+.+.- +.++++ +-. -.|+.+.+.+ ..+=.|+++.
T Consensus 59 ~~L~~~~~~~gi~f~s-tpf----------d~~s~d~-l~~~~~~~~KIaS~dl~n~-~lL~~~A~tgkPvIlSTG~stl 125 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPF----------DEESVDF-LEELGVPAYKIASGDLTNL-PLLEYIAKTGKPVILSTGMSTL 125 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-----------SHHHHHH-HHHHT-SEEEE-GGGTT-H-HHHHHHHTT-S-EEEE-TT--H
T ss_pred HHHHHHHHHcCCEEEE-CCC----------CHHHHHH-HHHcCCCEEEeccccccCH-HHHHHHHHhCCcEEEECCCCCH
Confidence 5899999999999998 344 2333332 244432 222 2577777766 3344499999
Q ss_pred HHHHHhhccc
Q 030851 116 ARLKENFDIF 125 (170)
Q Consensus 116 ~~l~enl~a~ 125 (170)
++|++.++.+
T Consensus 126 ~EI~~Av~~~ 135 (241)
T PF03102_consen 126 EEIERAVEVL 135 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998877
No 40
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=52.82 E-value=24 Score=29.15 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhCCCHHH---------HHHHhhhcCC--CEEeecCCCHH
Q 030851 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQ---------VALRWGLQMG--HSVLPKSANEA 116 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~q---------lal~~~l~~~--~~~i~g~~~~~ 116 (170)
..+.++|++.||.+++ +|+... -.++..+++++..- =.+.|+.+.+ ...-.|+.+.+
T Consensus 93 ~~Lke~a~~~Gi~~~S-SPfd~~-----------svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ 160 (347)
T COG2089 93 AQLKEYARKRGIIFFS-SPFDLT-----------AVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIE 160 (347)
T ss_pred HHHHHHHHHcCeEEEe-cCCCHH-----------HHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHH
Confidence 4789999999999887 676432 22333333322111 1466766654 44455889999
Q ss_pred HHHHhhccc
Q 030851 117 RLKENFDIF 125 (170)
Q Consensus 117 ~l~enl~a~ 125 (170)
.+++.++.+
T Consensus 161 ei~~av~~~ 169 (347)
T COG2089 161 EIEEAVAIL 169 (347)
T ss_pred HHHHHHHHH
Confidence 998888654
No 41
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=47.86 E-value=47 Score=27.99 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=36.0
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc------HHHHHHHHHcCcceEEecCCCC
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~via~~~l~~ 69 (170)
+.+.+++......++.-+.=.+-|+.-+- .++.+.|.++|+-||+-...+.
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaD 202 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHAD 202 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeeccccc
Confidence 77888888877765544444444554432 5899999999999998766544
No 42
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=46.46 E-value=37 Score=22.62 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=36.0
Q ss_pred cCCcHHHHHHHHHhcCCCceEeccccCccC---CcHHHHHHHHHcCcceEEecC
Q 030851 16 SNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 16 S~~~~~~i~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~via~~~ 66 (170)
|.++...+.++++...+ +++|+....+- ....+.++|+++|+.++..+.
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 45788889999876544 77777654332 226899999999999999775
No 43
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=45.34 E-value=85 Score=26.42 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=42.6
Q ss_pred cCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCC
Q 030851 7 SGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 7 ~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~g 70 (170)
.+.++.+-+...+++.++++++ .+.+..++..+-|+.-.- ..+.+.|+++|+-++.-.+.+.+
T Consensus 122 ~~g~~v~~v~~~d~~~l~~~i~-~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 122 KGHFALITADLTDPRSLADALA-QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred hcCcEEEEECCCCHHHHHHhcC-cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 3445666665567777777664 244556666565654432 68999999999999988887654
No 44
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=45.10 E-value=1.4e+02 Score=22.76 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=66.7
Q ss_pred ecCCcHHHHHHHHHhc-CCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhC---
Q 030851 15 VSNFSLKKLGDLLEIA-RIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLG--- 90 (170)
Q Consensus 15 vS~~~~~~i~~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~--- 90 (170)
+...+.+.+.++.+.. ...+.++|+.++--+....+-..+++.+..++ ++.| ..+..+.+.... +.|
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~----iGaG----TV~~~~~~~~a~-~aGA~f 86 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRAL----IGAG----TVLSPEQVDRLA-DAGGRL 86 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcE----EeEE----ecCCHHHHHHHH-HcCCCE
Confidence 4455666665554332 34568999988755444567777777764211 2233 445555553332 222
Q ss_pred -CCH--HHHHHHhhhcCCCEEeecCCCHHHHHHhhccc-C----C---CCCHHHHHhchhhh
Q 030851 91 -KSP--AQVALRWGLQMGHSVLPKSANEARLKENFDIF-D----W---YIPEDLLAKFPEIE 141 (170)
Q Consensus 91 -~s~--~qlal~~~l~~~~~~i~g~~~~~~l~enl~a~-~----~---~L~~~~~~~l~~~~ 141 (170)
.+| ..-..++....+..++||+.+++++.+..+.. + + .+..+.++.+....
T Consensus 87 ivsp~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 87 IVTPNTDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred EECCCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 222 12345566667788899999999988886542 2 1 24455555555444
No 45
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=44.40 E-value=59 Score=20.89 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=38.3
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEec
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYS 65 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~ 65 (170)
++++++.|++. ....+..+.++..+.+..++..+.+. +....+..+|.+++|+++-+.
T Consensus 3 ~~~~~ragkl~------~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV------IGTKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE------EcHHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 35667777532 23566667777677666776665544 223689999999999997644
No 46
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=44.30 E-value=36 Score=20.90 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCHHHHHHHhhh
Q 030851 81 IVNTVAEKLGKSPAQVALRWGL 102 (170)
Q Consensus 81 ~l~~~a~~~~~s~~qlal~~~l 102 (170)
.+.++|+.+|+++.+++..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999975
No 47
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=44.28 E-value=63 Score=24.54 Aligned_cols=52 Identities=6% Similarity=0.033 Sum_probs=37.6
Q ss_pred EEEecCCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCC
Q 030851 12 AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 12 ~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l 67 (170)
-+.+=+++++.++++++. +.++......+.. ..++++.++++|..++++-.-
T Consensus 74 plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 74 PLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred EEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 345557888999998887 5554444333322 578999999999999998777
No 48
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=43.58 E-value=64 Score=24.72 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHhcCCCceEeccccCccCCc----HHHHHHHHHcCcceEEec
Q 030851 25 DLLEIARIPPAVNQVECHPAWQQ----TKLQAFCKSKGVHLSGYS 65 (170)
Q Consensus 25 ~~~~~~~~~~~~~q~~~n~~~~~----~~~~~~~~~~gi~via~~ 65 (170)
.+.+.++..|+.+-++.---+-. +++.+||++||+.++...
T Consensus 148 dLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti~ 192 (203)
T COG0108 148 DLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVITIE 192 (203)
T ss_pred HHHHHcCCCCcEEEEEEeCCCccccChHHHHHHHHHcCCcEEEHH
Confidence 44455666676666664322321 578888888888777643
No 49
>TIGR03586 PseI pseudaminic acid synthase.
Probab=42.19 E-value=39 Score=27.81 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhCCCHHH---------HHHHhhhcCC--CEEeecCCCHH
Q 030851 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQ---------VALRWGLQMG--HSVLPKSANEA 116 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~q---------lal~~~l~~~--~~~i~g~~~~~ 116 (170)
..+.++|++.||.+++ .|+ +...+ ++..++++...+ -.|+.+-+.+ +..=.|+++.+
T Consensus 80 ~~L~~~~~~~Gi~~~s-tpf----------d~~sv-d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~ 147 (327)
T TIGR03586 80 KELFERAKELGLTIFS-SPF----------DETAV-DFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLE 147 (327)
T ss_pred HHHHHHHHHhCCcEEE-ccC----------CHHHH-HHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHH
Confidence 4688999999999998 333 33333 223334332211 1344444444 23333777877
Q ss_pred HHHHhhccc
Q 030851 117 RLKENFDIF 125 (170)
Q Consensus 117 ~l~enl~a~ 125 (170)
++...++.+
T Consensus 148 Ei~~Av~~i 156 (327)
T TIGR03586 148 EIQEAVEAC 156 (327)
T ss_pred HHHHHHHHH
Confidence 777776554
No 50
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=39.91 E-value=2e+02 Score=23.16 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=34.6
Q ss_pred CccEEEecCCcHH-------HHHHHHHhcCCCceEeccccCccCC-------c-HHHHHHHHHcCcceEEecCCCC
Q 030851 9 KARAIGVSNFSLK-------KLGDLLEIARIPPAVNQVECHPAWQ-------Q-TKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 9 ~Ir~iGvS~~~~~-------~i~~~~~~~~~~~~~~q~~~n~~~~-------~-~~~~~~~~~~gi~via~~~l~~ 69 (170)
-=|++|+.+.++. ++++.+... .+.-+++ +...+ . ..++++|.++|+.|+.......
T Consensus 97 pdrf~~~~~v~p~~~~~a~~E~er~v~~~--gf~g~~l--~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~ 168 (293)
T COG2159 97 PDRFVGFARVDPRDPEAAAEELERRVREL--GFVGVKL--HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGP 168 (293)
T ss_pred CcceeeeeeeCCCchHHHHHHHHHHHHhc--CceEEEe--cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3478888887654 333333332 2333443 22222 1 4799999999999999766644
No 51
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=38.65 E-value=1.3e+02 Score=24.06 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=53.1
Q ss_pred HhhcCC-ccEEEecCCcHHHHHHHHHhcCCC--------------ceEeccccCccCCcHHHHHHHHHcCcceEEecCCC
Q 030851 4 LYDSGK-ARAIGVSNFSLKKLGDLLEIARIP--------------PAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLG 68 (170)
Q Consensus 4 l~~~G~-Ir~iGvS~~~~~~i~~~~~~~~~~--------------~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~ 68 (170)
+.+.+. +.-++++.-+++..+++.+..++. ++++-+- ++.+...++...|.++|+.|++=+|++
T Consensus 23 ~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Ia-tp~~~H~e~~~~AL~aGkhVl~EKPla 101 (342)
T COG0673 23 LAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIA-TPNALHAELALAALEAGKHVLCEKPLA 101 (342)
T ss_pred HHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEc-CCChhhHHHHHHHHhcCCEEEEcCCCC
Confidence 344444 688899888888877776655532 1111110 111222688899999999999999997
Q ss_pred CCCCCCCCCCcHHHHHHHHHhCC
Q 030851 69 SAKNTHRVLQNPIVNTVAEKLGK 91 (170)
Q Consensus 69 ~gg~~~~~~~~~~l~~~a~~~~~ 91 (170)
. .+-..+.+.++|++.|.
T Consensus 102 ~-----t~~ea~~l~~~a~~~~~ 119 (342)
T COG0673 102 L-----TLEEAEELVELARKAGV 119 (342)
T ss_pred C-----CHHHHHHHHHHHHHcCC
Confidence 6 34444667777877653
No 52
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=38.55 E-value=1.9e+02 Score=23.27 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=45.0
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc------HHHHHHHHHcCcceE-EecCCCCCCCC-----CCCCCcHHHHHHH
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLS-GYSPLGSAKNT-----HRVLQNPIVNTVA 86 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~vi-a~~~l~~gg~~-----~~~~~~~~l~~~a 86 (170)
+.+.+.++++. .|..+++.=|.+..+ .++.++|+..|+.|= =...+++.... ..+-+++...+++
T Consensus 86 ~~e~i~~Ai~~---GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 86 TFEDVKQAVRA---GFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred CHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHH
Confidence 45666666543 457777766655542 689999999999873 33333222100 1133456778888
Q ss_pred HHhCCCHHH
Q 030851 87 EKLGKSPAQ 95 (170)
Q Consensus 87 ~~~~~s~~q 95 (170)
++.|++...
T Consensus 163 ~~TgvD~LA 171 (283)
T PRK07998 163 ERTGCDMLA 171 (283)
T ss_pred HHhCcCeee
Confidence 888876443
No 53
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=37.47 E-value=2.3e+02 Score=23.14 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=43.3
Q ss_pred HhhcCCccEEEecC----CcHHHH----HHHHHhcCCCceEeccccCccCC----cHHHHHHHHHcCcceEEecCCCCCC
Q 030851 4 LYDSGKARAIGVSN----FSLKKL----GDLLEIARIPPAVNQVECHPAWQ----QTKLQAFCKSKGVHLSGYSPLGSAK 71 (170)
Q Consensus 4 l~~~G~Ir~iGvS~----~~~~~i----~~~~~~~~~~~~~~q~~~n~~~~----~~~~~~~~~~~gi~via~~~l~~gg 71 (170)
+..-..++.+|+.+ ..+..+ .+.++..+. ..++++.+|-... ..+.++.+++.|+.+....++..|
T Consensus 168 l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~-~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkg- 245 (321)
T TIGR03821 168 LEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRL-QTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRG- 245 (321)
T ss_pred HHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCC-cEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCC-
Confidence 44446677777764 333332 222333322 1333456653321 157888899999999999999775
Q ss_pred CCCCCCCcHHHHHHH
Q 030851 72 NTHRVLQNPIVNTVA 86 (170)
Q Consensus 72 ~~~~~~~~~~l~~~a 86 (170)
-..+.+.+.++.
T Consensus 246 ---iNDn~~~l~~L~ 257 (321)
T TIGR03821 246 ---VNDNADTLAALS 257 (321)
T ss_pred ---CCCCHHHHHHHH
Confidence 222334455543
No 54
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=37.26 E-value=2.2e+02 Score=23.56 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=49.9
Q ss_pred HhhcC-CccEEEecCCcHHHHHHHHHhcCC-------------CceEeccccC-ccCCcHHHHHHHHHcCcceEEecCCC
Q 030851 4 LYDSG-KARAIGVSNFSLKKLGDLLEIARI-------------PPAVNQVECH-PAWQQTKLQAFCKSKGVHLSGYSPLG 68 (170)
Q Consensus 4 l~~~G-~Ir~iGvS~~~~~~i~~~~~~~~~-------------~~~~~q~~~n-~~~~~~~~~~~~~~~gi~via~~~l~ 68 (170)
+.+.. .++-+||+.-+.+..+++.+..++ ++++|-+.-. +-....++...|.++|+.|++=+|++
T Consensus 21 l~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla 100 (343)
T TIGR01761 21 FAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLH 100 (343)
T ss_pred HHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCC
Confidence 34444 577889988888887777665442 3333333211 11223688888999999999999995
Q ss_pred CCCCCCCCCCcHHHHHHHHHhC
Q 030851 69 SAKNTHRVLQNPIVNTVAEKLG 90 (170)
Q Consensus 69 ~gg~~~~~~~~~~l~~~a~~~~ 90 (170)
. -+.+++.++|++.|
T Consensus 101 ~-------~Ea~el~~~A~~~g 115 (343)
T TIGR01761 101 P-------RDIQDLLRLAERQG 115 (343)
T ss_pred H-------HHHHHHHHHHHHcC
Confidence 2 12355566666654
No 55
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=36.99 E-value=99 Score=26.19 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHhcCC-CceEeccccCccCCcHHHHHHHHHcCcceEEecCCCC
Q 030851 17 NFSLKKLGDLLEIARI-PPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 17 ~~~~~~i~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~ 69 (170)
..+++.++++++.+.. ++.++...... .-..+.+.|+++|..++++++..-
T Consensus 200 ~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 200 EKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred cCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 3588889988888765 55554433321 225899999999999999988744
No 56
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=36.75 E-value=99 Score=24.81 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=36.4
Q ss_pred EEEecCC-cH--HHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCC
Q 030851 12 AIGVSNF-SL--KKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 12 ~iGvS~~-~~--~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l 67 (170)
.|++|-| ++ ..+.+.+...+- .+.-+..|+++.+.++..+..+.||.|.||.--
T Consensus 45 rIa~cLHle~kTA~L~~tL~a~GA--eV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~ge 101 (268)
T PF05221_consen 45 RIAGCLHLEAKTAVLAETLKALGA--EVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGE 101 (268)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTE--EEEEEESSTTT--HHHHHHHHHTTEEEEE-TT-
T ss_pred EEEEEEechHHHHHHHHHHHHcCC--eEEEecCCCcccchHHHHHhccCCceEEEeCCC
Confidence 6788876 43 445555665654 555567789999999999999999999997543
No 57
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=36.41 E-value=1.3e+02 Score=24.89 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=39.1
Q ss_pred EEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCC
Q 030851 12 AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 12 ~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~g 70 (170)
..-+...+++.++++++ .+.+..++..+.|+.-.- .++.+.|+++|+-++.-...+.+
T Consensus 113 v~~vd~~d~~~le~~i~-~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 113 VVHVDTTDLDKVKAALG-PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred EEEeCCCCHHHHHHhcC-cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 33333346777777664 345556666666654432 68999999999999988876443
No 58
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=35.45 E-value=1.2e+02 Score=28.06 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCcceEEecCCCCCCCCCC
Q 030851 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHR 75 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~~gg~~~~ 75 (170)
.+.+++|++.|..||.....++||.+-+
T Consensus 174 ~EA~eF~k~yG~PvI~KAAyGGGGRGmR 201 (1176)
T KOG0369|consen 174 EEALEFVKEYGLPVIIKAAYGGGGRGMR 201 (1176)
T ss_pred HHHHHHHHhcCCcEEEeecccCCCcceE
Confidence 6899999999999999999998875533
No 59
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=35.38 E-value=91 Score=25.67 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=35.2
Q ss_pred EecCCcHHHHHHHHHhcCCCceEe--------------ccccCccCCc------HHHHHHHHHcCcceEEecCCCC
Q 030851 14 GVSNFSLKKLGDLLEIARIPPAVN--------------QVECHPAWQQ------TKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 14 GvS~~~~~~i~~~~~~~~~~~~~~--------------q~~~n~~~~~------~~~~~~~~~~gi~via~~~l~~ 69 (170)
--+.|++++..++.+.++.+..++ ...||..+.. .++.+.|+++||.+-.|-+...
T Consensus 87 ~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 87 NPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp --TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred CcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 346789999999888887433322 2334444332 5899999999999999888754
No 60
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=35.27 E-value=21 Score=30.90 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=32.8
Q ss_pred CCccEEEecCCcHHHHHHHHHhcCCCceEeccccCc-cCC-cHHHHHHHHHcCcc
Q 030851 8 GKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHP-AWQ-QTKLQAFCKSKGVH 60 (170)
Q Consensus 8 G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~-~~~-~~~~~~~~~~~gi~ 60 (170)
+++|++|+..++.+.+.++......+ +.++.+..+ +++ ++++++.+++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~-~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEK-DLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccch-hHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 57899999999999998887655522 333333332 232 25666666665543
No 61
>PRK10945 gene expression modulator; Provisional
Probab=34.15 E-value=39 Score=21.39 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=33.1
Q ss_pred cCCCHHHHHHhhcccCCCCCHHHHHhchhhhcccc---ccCCcccc
Q 030851 111 KSANEARLKENFDIFDWYIPEDLLAKFPEIEQERL---VKGAGFVH 153 (170)
Q Consensus 111 g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~---~~~~~~~~ 153 (170)
.++|.+-|+..++-....|+.+|+..+.++...|. +.| +-|+
T Consensus 17 rcss~eTLEkvie~~~~~L~~~E~~~f~~AaDHR~AEL~~~-KLyD 61 (72)
T PRK10945 17 RCQTIDTLERVIEKNKYELSDDELAVFYSAADHRLAELTMN-KLYD 61 (72)
T ss_pred hcCcHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhc-hhHh
Confidence 46788899999999889999999999999888544 344 5554
No 62
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=33.94 E-value=2.1e+02 Score=21.99 Aligned_cols=54 Identities=9% Similarity=-0.079 Sum_probs=31.7
Q ss_pred cEEEecCCcHHHHHHHHHhcCCCceEeccccCccC-C---c--HHHHHHHHHcC-cceEEec
Q 030851 11 RAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW-Q---Q--TKLQAFCKSKG-VHLSGYS 65 (170)
Q Consensus 11 r~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~-~---~--~~~~~~~~~~g-i~via~~ 65 (170)
+.||+|+|+.+++.++.+.. .+...+=--|.--. . . .+.+....+.. +++++..
T Consensus 105 ~iIG~S~h~~eea~~A~~~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIG 165 (211)
T COG0352 105 LIIGLSTHDLEEALEAEELG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIG 165 (211)
T ss_pred CEEEeecCCHHHHHHHHhcC-CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEc
Confidence 47999999999999887653 32222222221111 1 1 36666666665 8877743
No 63
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=33.60 E-value=2.5e+02 Score=22.49 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHh----------CCC--------HHHHHHHhhhcC---
Q 030851 46 QQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKL----------GKS--------PAQVALRWGLQM--- 104 (170)
Q Consensus 46 ~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~----------~~s--------~~qlal~~~l~~--- 104 (170)
...++.+.|+++||..+--.+... ..+++..+++.- |.| ...-.++.+.++
T Consensus 135 e~~~~~~~~~~~gi~~I~lvaPtt--------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~ 206 (265)
T COG0159 135 ESDELLKAAEKHGIDPIFLVAPTT--------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDV 206 (265)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCC--------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCC
Confidence 336899999999999887666643 245555554432 221 122344555444
Q ss_pred CCEEeecCCCHHHHHHhhcccCC-CCCHHHHHhchhh
Q 030851 105 GHSVLPKSANEARLKENFDIFDW-YIPEDLLAKFPEI 140 (170)
Q Consensus 105 ~~~~i~g~~~~~~l~enl~a~~~-~L~~~~~~~l~~~ 140 (170)
|..+=.|.++++|+++..++++. -.-.+-++.|++.
T Consensus 207 Pv~vGFGIs~~e~~~~v~~~ADGVIVGSAiV~~i~~~ 243 (265)
T COG0159 207 PVLVGFGISSPEQAAQVAEAADGVIVGSAIVKIIEEG 243 (265)
T ss_pred CeEEecCcCCHHHHHHHHHhCCeEEEcHHHHHHHHhc
Confidence 34444599999999999999774 4455555555553
No 64
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=33.19 E-value=1.7e+02 Score=24.03 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=39.1
Q ss_pred ccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCC
Q 030851 10 ARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLG 68 (170)
Q Consensus 10 Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~ 68 (170)
++..-+...+++.++++++. +.+..++..+-|+.-.. ..+.+.|+++|+.++.-.+.+
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 33344444567777776542 44556666777775433 689999999999999887774
No 65
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=33.17 E-value=3.2e+02 Score=23.65 Aligned_cols=115 Identities=10% Similarity=0.099 Sum_probs=53.6
Q ss_pred hhHhhcCCccEEEecC----CcHHHHHHHHHhc---C-CCce-EeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCC
Q 030851 2 EALYDSGKARAIGVSN----FSLKKLGDLLEIA---R-IPPA-VNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKN 72 (170)
Q Consensus 2 ~~l~~~G~Ir~iGvS~----~~~~~i~~~~~~~---~-~~~~-~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~ 72 (170)
+.++++.-++++-++. .+.+.+.++.+.. + ..+. ..++..+.+....++++..++.|+.-+..+.=+.
T Consensus 232 ~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~--- 308 (497)
T TIGR02026 232 EWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAA--- 308 (497)
T ss_pred HHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccC---
Confidence 3455544467766553 2444444443321 1 2221 1344444443456888888888876665443322
Q ss_pred CCCCCCcHHHHHHHHHhCCCHHHHHHHhhhcCC----CEEeecC--CCHHHHHHhhcc
Q 030851 73 THRVLQNPIVNTVAEKLGKSPAQVALRWGLQMG----HSVLPKS--ANEARLKENFDI 124 (170)
Q Consensus 73 ~~~~~~~~~l~~~a~~~~~s~~qlal~~~l~~~----~~~i~g~--~~~~~l~enl~a 124 (170)
+++.+..+-+.+......-+++.+.+++ ...|+|. .+.+++++.++.
T Consensus 309 -----~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~ 361 (497)
T TIGR02026 309 -----AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQ 361 (497)
T ss_pred -----CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHH
Confidence 1233333322221112223455555555 2345553 345666665543
No 66
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=33.00 E-value=97 Score=24.45 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=19.2
Q ss_pred hhcCCccEEEecCCcHHHHHHHHHhc
Q 030851 5 YDSGKARAIGVSNFSLKKLGDLLEIA 30 (170)
Q Consensus 5 ~~~G~Ir~iGvS~~~~~~i~~~~~~~ 30 (170)
++.|.-+.+=+|+|+++.+..+.+..
T Consensus 165 ~~~~~~~~viisSF~~~~l~~l~~~~ 190 (282)
T cd08605 165 KQHAPGRRIMFSSFDPDAAVLLRALQ 190 (282)
T ss_pred HhcCCCCeEEEEeCCHHHHHHHHhcC
Confidence 34566677889999999988776543
No 67
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.64 E-value=2.1e+02 Score=21.95 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=38.8
Q ss_pred hHhhcCCccEEEecCCcHHHHHHHHHhcCCC---------------------------ceEeccccCcc---CCcHHHHH
Q 030851 3 ALYDSGKARAIGVSNFSLKKLGDLLEIARIP---------------------------PAVNQVECHPA---WQQTKLQA 52 (170)
Q Consensus 3 ~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~---------------------------~~~~q~~~n~~---~~~~~~~~ 52 (170)
.+++.|.-+.+=+++|+.+.+.++.+....- ...+.++++.. ....++++
T Consensus 127 ~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (249)
T cd08561 127 LIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIPVRYGGVPLVTPRFVR 206 (249)
T ss_pred HHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHHHHhhcccccccCCCCcEEEcCcccCCeecCCHHHHH
Confidence 3455666677888889888888877654310 01111222111 11257888
Q ss_pred HHHHcCcceEEecCC
Q 030851 53 FCKSKGVHLSGYSPL 67 (170)
Q Consensus 53 ~~~~~gi~via~~~l 67 (170)
.++++|+.+.+|..-
T Consensus 207 ~~~~~G~~v~vWTVN 221 (249)
T cd08561 207 AAHAAGLEVHVWTVN 221 (249)
T ss_pred HHHHCCCEEEEEecC
Confidence 888888888887753
No 68
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=32.50 E-value=1.7e+02 Score=22.18 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=34.1
Q ss_pred HhhcCCcc-EEEecCCcHHHHHHHHHhcCCCceEeccccCccCC---cHHHHHHHHHcCcceEEecCC
Q 030851 4 LYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQ---QTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 4 l~~~G~Ir-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~---~~~~~~~~~~~gi~via~~~l 67 (170)
|.+...+. ..+=|.++.+.+.++++... .+++|+..+.+-- ..++.++|+++|+.++..+.+
T Consensus 140 L~~~~~~pIa~dEs~~~~~~~~~~~~~~~--~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~ 205 (229)
T cd00308 140 LRRRTGIPIAADESVTTVDDALEALELGA--VDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTL 205 (229)
T ss_pred HHhhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCC
Confidence 44444333 22333456666655554433 3666665554332 147777888888888776554
No 69
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=31.97 E-value=6.8 Score=33.73 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHhhhcCC---CEEeec
Q 030851 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGKSPAQVALRWGLQMG---HSVLPK 111 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~~s~~qlal~~~l~~~---~~~i~g 111 (170)
+.-+.+++++||.++.+.-+.+ .++....--.++..||.|.+.-.++|+++.. .+.++|
T Consensus 80 NpEi~~A~e~~ipi~~r~e~La-----elm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 80 NPEIVAALERGIPVISRAEMLA-----ELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred CHHHHHHHHcCCCeEcHHHHHH-----HHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 5677778888888877555432 2222222223355678999888999999874 566666
No 70
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=31.78 E-value=24 Score=22.63 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=20.2
Q ss_pred CCCHHHHHhchhhhccccccCCccccc
Q 030851 128 YIPEDLLAKFPEIEQERLVKGAGFVHE 154 (170)
Q Consensus 128 ~L~~~~~~~l~~~~~~~~~~~~~~~~~ 154 (170)
+||++|.+.|+++.+.-...+|+|-..
T Consensus 2 ~LSe~E~r~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRADDPRFAAR 28 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 689999999999999544444466653
No 71
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=31.78 E-value=1.1e+02 Score=25.14 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=32.2
Q ss_pred cHHHHHHHHHhcCCC-ceEeccccCccCCcHHHHHHHHHcCcceEEecCC
Q 030851 19 SLKKLGDLLEIARIP-PAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l 67 (170)
+++.++++++.++.+ +.++..... .-..+.+.|+++|..|++.++.
T Consensus 138 D~evleaale~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 138 DAEVLEKVAEAAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred CHHHHHHHHHHhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHH
Confidence 788888888877743 444433321 1257999999999999998755
No 72
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=31.27 E-value=2.4e+02 Score=24.19 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=41.9
Q ss_pred HhhcCCccEEEecCCcHHHHHHHHHhcC------CCceEeccccCccCCc--HHHHHHHHHcCcceEEecC
Q 030851 4 LYDSGKARAIGVSNFSLKKLGDLLEIAR------IPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 4 l~~~G~Ir~iGvS~~~~~~i~~~~~~~~------~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~ 66 (170)
+-+.|-+..+|..+.+++++++.++..+ ..+-++-+ .++-++. ...++.+.++||.++..+.
T Consensus 34 vs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 34 MGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 4478899999999999999987765543 23333332 2222222 5789999999998776554
No 73
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=31.23 E-value=2.3e+02 Score=21.39 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=21.2
Q ss_pred HhhcCCccEEEecCCcHHHHHHHHHhcC
Q 030851 4 LYDSGKARAIGVSNFSLKKLGDLLEIAR 31 (170)
Q Consensus 4 l~~~G~Ir~iGvS~~~~~~i~~~~~~~~ 31 (170)
+++.|....+=+++|+.+.+.++.+...
T Consensus 112 l~~~~~~~~v~i~SF~~~~l~~~~~~~p 139 (226)
T cd08568 112 VEKFNALDRVIFSSFNHDALRELRKLDP 139 (226)
T ss_pred HHHcCCCCcEEEEECCHHHHHHHHHhCC
Confidence 4456767788899999999888876543
No 74
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=30.57 E-value=1.7e+02 Score=19.70 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=27.7
Q ss_pred CCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCC
Q 030851 17 NFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 17 ~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l 67 (170)
..+++.+..+.......+.++=+--+.....+++.++++++||++-.|.+-
T Consensus 38 ~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 38 DLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 345666666654321222333333333333467778888888887776554
No 75
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=29.95 E-value=1.7e+02 Score=23.02 Aligned_cols=28 Identities=25% Similarity=0.174 Sum_probs=20.9
Q ss_pred hHhhcCCccEEEecCCcHHHHHHHHHhc
Q 030851 3 ALYDSGKARAIGVSNFSLKKLGDLLEIA 30 (170)
Q Consensus 3 ~l~~~G~Ir~iGvS~~~~~~i~~~~~~~ 30 (170)
.+++-|.-+.+=+|+|+++.+..+....
T Consensus 158 ~i~~~~~~~~vi~sSF~~~~l~~~~~~~ 185 (286)
T cd08606 158 KVFDYGAGRNIIFSSFTPDICILLSLKQ 185 (286)
T ss_pred HHHhcCCCCceEEEcCCHHHHHHHHhhC
Confidence 3445666778899999999988776543
No 76
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=29.87 E-value=1.3e+02 Score=26.78 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEEecCCCCCC
Q 030851 23 LGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPLGSAK 71 (170)
Q Consensus 23 i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l~~gg 71 (170)
..+.++..++++.+.=+.|..-... ..+.++|.+.|+.+.....++.||
T Consensus 364 HIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg 414 (557)
T PRK13505 364 HIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGG 414 (557)
T ss_pred HHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCC
Confidence 3344455556655555555443332 468899999999999888888885
No 77
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=29.70 E-value=1.6e+02 Score=27.29 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhC----------
Q 030851 21 KKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLG---------- 90 (170)
Q Consensus 21 ~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~---------- 90 (170)
++|.+..+.. ..+.+.-.|..++...+..+.|++.||.+|.-+|---- ..-+.-..+.+|-+.|
T Consensus 96 deii~iak~~--~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~----~mGDKv~AR~~Ai~agVpvVPGTpgP 169 (1176)
T KOG0369|consen 96 DEIISIAKKH--NVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVID----SMGDKVAARAIAIEAGVPVVPGTPGP 169 (1176)
T ss_pred HHHHHHHHHc--CCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHH----HhhhHHHHHHHHHHcCCCccCCCCCC
Confidence 3344443333 45889999999988899999999999999986654110 0001122344454544
Q ss_pred CCHHHHHHHhhhcCCCEEee
Q 030851 91 KSPAQVALRWGLQMGHSVLP 110 (170)
Q Consensus 91 ~s~~qlal~~~l~~~~~~i~ 110 (170)
++..+-|+.|+...+..+|.
T Consensus 170 itt~~EA~eF~k~yG~PvI~ 189 (1176)
T KOG0369|consen 170 ITTVEEALEFVKEYGLPVII 189 (1176)
T ss_pred cccHHHHHHHHHhcCCcEEE
Confidence 34567788898888866665
No 78
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=29.27 E-value=2e+02 Score=23.96 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=38.5
Q ss_pred cCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCC
Q 030851 7 SGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 7 ~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~ 69 (170)
.+.++..-+...+++.++++++. +.+..++..+-|+.-.- ..+.+.|+++|+-++.-...+.
T Consensus 113 ~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 113 KGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred hcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 33344444444567777776542 34445555555554432 6899999999998888777654
No 79
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.07 E-value=1.4e+02 Score=22.76 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=10.8
Q ss_pred HHHHHHHHHcCcceEE
Q 030851 48 TKLQAFCKSKGVHLSG 63 (170)
Q Consensus 48 ~~~~~~~~~~gi~via 63 (170)
.+++++|+++||.++.
T Consensus 87 ~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 87 QELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHcCCCEeC
Confidence 5677777777766665
No 80
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=29.04 E-value=2.2e+02 Score=20.72 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=26.9
Q ss_pred CccEEEecCC--cHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEE
Q 030851 9 KARAIGVSNF--SLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSG 63 (170)
Q Consensus 9 ~Ir~iGvS~~--~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via 63 (170)
+|-.+|..+. +...+.+++ +. .+.+..|+-.+.-...+..+.+.|+.++.
T Consensus 79 ~Iavv~~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 79 KIAVVGYPNIIPGLESIEELL---GV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp EEEEEEESS-SCCHHHHHHHH---T---EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred cEEEEecccccHHHHHHHHHh---CC--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 5566666664 345555554 22 55555554222225777888888888887
No 81
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=28.92 E-value=21 Score=23.34 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.1
Q ss_pred hhHhhcCCccEEE-ecC
Q 030851 2 EALYDSGKARAIG-VSN 17 (170)
Q Consensus 2 ~~l~~~G~Ir~iG-vS~ 17 (170)
+.|++.|.||++| |++
T Consensus 56 QdLv~~gfir~~g~vG~ 72 (84)
T cd04436 56 QDLLNQGFLRLVGGVGS 72 (84)
T ss_pred HHHHhCchHHHhcccCc
Confidence 4688999999999 553
No 82
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=28.90 E-value=2.4e+02 Score=21.45 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCc-HHHHHH
Q 030851 45 WQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN-PIVNTV 85 (170)
Q Consensus 45 ~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~-~~l~~~ 85 (170)
+...+.+++|++.|-+|+.+...++||...+...+ +.+.+.
T Consensus 25 ~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~ 66 (211)
T PF02786_consen 25 SSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEA 66 (211)
T ss_dssp SSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhh
Confidence 34479999999999999999999888766444443 444443
No 83
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.78 E-value=84 Score=24.69 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=32.1
Q ss_pred ChhHhhcCCccEEEecCCcHHHHHHHHHhcC----CCceEeccccCccCCcHHHHHHHHHc
Q 030851 1 MEALYDSGKARAIGVSNFSLKKLGDLLEIAR----IPPAVNQVECHPAWQQTKLQAFCKSK 57 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~----~~~~~~q~~~n~~~~~~~~~~~~~~~ 57 (170)
+++++++| ..+|+=++-.+++..+....+ +++.+..+....-.+++.++++|-++
T Consensus 122 lq~lR~~g--~~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~ 180 (237)
T KOG3085|consen 122 LQKLRKKG--TILGIISNFDDRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALER 180 (237)
T ss_pred HHHHHhCC--eEEEEecCCcHHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHH
Confidence 46778888 445554444444444444333 34455555556666667788877765
No 84
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=28.70 E-value=76 Score=21.59 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=12.5
Q ss_pred eEeccccCccCCcHHHHHHHHHcCcceE
Q 030851 35 AVNQVECHPAWQQTKLQAFCKSKGVHLS 62 (170)
Q Consensus 35 ~~~q~~~n~~~~~~~~~~~~~~~gi~vi 62 (170)
+.+.--|..+....++.+.|.+.|+.++
T Consensus 76 ~~i~pGyg~lse~~~fa~~~~~~gi~fi 103 (110)
T PF00289_consen 76 DAIHPGYGFLSENAEFAEACEDAGIIFI 103 (110)
T ss_dssp SEEESTSSTTTTHHHHHHHHHHTT-EES
T ss_pred cccccccchhHHHHHHHHHHHHCCCEEE
Confidence 3444444444444445555555554444
No 85
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.28 E-value=2e+02 Score=23.11 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHhcCCCceEeccccCccCC---cHHHHHHHHHcCcceEEecCC
Q 030851 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQ---QTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 18 ~~~~~i~~~~~~~~~~~~~~q~~~n~~~~---~~~~~~~~~~~gi~via~~~l 67 (170)
++...+.++++.... +.+|...+.+-- ..++..+|+++|+.++..+.+
T Consensus 238 ~~~~~~~~~~~~~~~--d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~ 288 (316)
T cd03319 238 FSAADAARLAGGGAY--DGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMV 288 (316)
T ss_pred CCHHHHHHHHhcCCC--CEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECch
Confidence 556666666554333 555555433221 146677777777777665433
No 86
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=28.19 E-value=1.9e+02 Score=19.51 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCC
Q 030851 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 18 ~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l 67 (170)
.+.+.+..+... +..+.++=+--+.....+++.++++++||++-.|.+-
T Consensus 40 l~~e~l~~l~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 40 LTAAHFEALLAL-QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCHHHHHHHHhc-CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 355666665543 2333333333333334567888888888888776554
No 87
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=28.16 E-value=3.1e+02 Score=21.82 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=22.4
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEE
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSG 63 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via 63 (170)
+.+++.++++....... -+-|++.+.. ..+.++|++.||..+-
T Consensus 38 ~~~~~~~il~~i~~~~~--iV~~Tlv~~~lr~~l~~~~~~~~i~~~D 82 (255)
T PF03618_consen 38 TEEQLDEILEEIKEENA--IVFYTLVDPELREYLEEFCREHGIPCVD 82 (255)
T ss_pred CHHHHHHHHHHHhccCC--EEEEeCCCHHHHHHHHHHHHhcCCCEEe
Confidence 45555555554443222 2234455554 3455588888776654
No 88
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=28.10 E-value=2.8e+02 Score=22.27 Aligned_cols=71 Identities=7% Similarity=0.014 Sum_probs=42.9
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc------HHHHHHHHHcCcceEEecCCCCCCCCC------CCCCcHHHHHHH
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGYSPLGSAKNTH------RVLQNPIVNTVA 86 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~via~~~l~~gg~~~------~~~~~~~l~~~a 86 (170)
+.+.+.++++. .|..+++.-|.+... .++.++|++.|+.|=+=----+|..-+ .+-+++...+++
T Consensus 81 ~~~~i~~ai~~---GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv 157 (276)
T cd00947 81 SFELIKRAIRA---GFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFV 157 (276)
T ss_pred CHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHH
Confidence 45666666654 367888877766643 589999999998775532222221000 122346667777
Q ss_pred HHhCCC
Q 030851 87 EKLGKS 92 (170)
Q Consensus 87 ~~~~~s 92 (170)
++.|++
T Consensus 158 ~~TgvD 163 (276)
T cd00947 158 EETGVD 163 (276)
T ss_pred HHHCCC
Confidence 776654
No 89
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=27.76 E-value=1.4e+02 Score=24.96 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=36.4
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCC
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~g 70 (170)
+++.++++++..+.+..++....|+.-.- ..+.+.|+++|+.++.-...+.|
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~ 179 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATP 179 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 56777776653345556666666654322 68999999999999988887544
No 90
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.67 E-value=2.6e+02 Score=23.78 Aligned_cols=67 Identities=7% Similarity=0.024 Sum_probs=46.2
Q ss_pred HhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCC
Q 030851 4 LYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 4 l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~g 70 (170)
+.++.-|....+-.-+...+.+.+...+.+..++..+=|++-.- ..+.+.|+++|+-++.-++++.+
T Consensus 122 ~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 122 ILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred HHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 33444444444444455455554433456778889888877754 68999999999999999999775
No 91
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=27.41 E-value=2.2e+02 Score=22.28 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=37.2
Q ss_pred EEecCCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCC
Q 030851 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLG 68 (170)
Q Consensus 13 iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~ 68 (170)
+.+-+++++.++++++.+ ...++-+ +......++++.+++.|..++.+-.-.
T Consensus 79 iSIDT~~~~v~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 79 ISVDTFNAEVAEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred EEEeCCcHHHHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcCC
Confidence 778889999999999876 2233332 333223689999999999999986543
No 92
>PRK07179 hypothetical protein; Provisional
Probab=27.08 E-value=3.2e+02 Score=22.60 Aligned_cols=57 Identities=9% Similarity=-0.074 Sum_probs=38.1
Q ss_pred EEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCC
Q 030851 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 13 iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~ 69 (170)
+-+...+++.++++++.......++...+|+.-.- .++.+.|+++|+-++.-...+.
T Consensus 163 ~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~ 222 (407)
T PRK07179 163 HPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSL 222 (407)
T ss_pred EEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccc
Confidence 33444588888888764334445555555543322 6899999999999988776643
No 93
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=26.86 E-value=89 Score=21.28 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=21.7
Q ss_pred hhHhhcCCccEEEecCCcHHHHHHHHH
Q 030851 2 EALYDSGKARAIGVSNFSLKKLGDLLE 28 (170)
Q Consensus 2 ~~l~~~G~Ir~iGvS~~~~~~i~~~~~ 28 (170)
.+++++|++.||=.+.-.+..++++-+
T Consensus 68 relvqkgWvGYiya~~~P~k~leei~~ 94 (113)
T COG5625 68 RELVQKGWVGYIYATTPPPKPLEEIEE 94 (113)
T ss_pred HHHHhccceeeEecCCCCchHHHHHHH
Confidence 478899999999888888887777643
No 94
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.69 E-value=2e+02 Score=22.95 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=21.4
Q ss_pred hHhhcCCccEEEecCCcHHHHHHHHHhcC
Q 030851 3 ALYDSGKARAIGVSNFSLKKLGDLLEIAR 31 (170)
Q Consensus 3 ~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~ 31 (170)
.+++.|..+.+=+++|+++.+..+.+...
T Consensus 172 ~i~~~~~~~~vv~~SF~~~~l~~l~~~~p 200 (293)
T cd08572 172 VVFEHAGGRRIIFSSFDPDICIMLRLKQN 200 (293)
T ss_pred HHHHhCCCCcEEEECCCHHHHHHHHhhCc
Confidence 34566777788899999998877765543
No 95
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=26.69 E-value=2.2e+02 Score=19.61 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHhcCCCceEeccccCcc-CCcHHHHHHHHHcCcceEEecC
Q 030851 17 NFSLKKLGDLLEIARIPPAVNQVECHPA-WQQTKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 17 ~~~~~~i~~~~~~~~~~~~~~q~~~n~~-~~~~~~~~~~~~~gi~via~~~ 66 (170)
..+++.+.++++. ...+.++=+--... ...++++++++++||+++.|.+
T Consensus 45 ~l~~~~l~~ll~~-~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T 94 (117)
T cd05126 45 GLQPEELEELLEE-GVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPT 94 (117)
T ss_pred cCCHHHHHHHHhc-CCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcCh
Confidence 4567777777653 23334444444432 3457788888888888888544
No 96
>PF12728 HTH_17: Helix-turn-helix domain
Probab=26.67 E-value=1.1e+02 Score=17.16 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=14.9
Q ss_pred hHhhcCCccEEEecC---CcHHHHHHHHH
Q 030851 3 ALYDSGKARAIGVSN---FSLKKLGDLLE 28 (170)
Q Consensus 3 ~l~~~G~Ir~iGvS~---~~~~~i~~~~~ 28 (170)
++.++|.+..+++.. ++.+.+.+.++
T Consensus 20 ~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (51)
T PF12728_consen 20 RWIRQGKIPPFKIGRKWRIPKSDLDRWLE 48 (51)
T ss_pred HHHHcCCCCeEEeCCEEEEeHHHHHHHHH
Confidence 455666666666543 45555555543
No 97
>PF05848 CtsR: Firmicute transcriptional repressor of class III stress genes (CtsR); InterPro: IPR008463 This family consists of several Firmicute transcriptional repressor of class III stress gene (CtsR) proteins. CtsR of Listeria monocytogenes negatively regulates the clpC, clpP and clpE genes belonging to the CtsR regulon [].; PDB: 3H0D_A.
Probab=26.44 E-value=2.2e+02 Score=20.79 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCHHH----HHHHhhhcCC--------------CEEeecCCCHHHHHHhhcccCCCCCHHHHHh
Q 030851 82 VNTVAEKLGKSPAQ----VALRWGLQMG--------------HSVLPKSANEARLKENFDIFDWYIPEDLLAK 136 (170)
Q Consensus 82 l~~~a~~~~~s~~q----lal~~~l~~~--------------~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~ 136 (170)
-.++|++++|.|.| +..||+..+| ++-+.-....+-+...++...-.+|..+-..
T Consensus 28 R~eLA~~F~CvPSQINYVl~TRFT~e~GY~VESrRGGGGyIRI~rv~~~~~~~~~~~l~~~ig~~is~~~a~~ 100 (152)
T PF05848_consen 28 RNELAERFNCVPSQINYVLSTRFTPERGYIVESRRGGGGYIRIVRVPLDDEEDLLDHLIESIGDSISQQDAED 100 (152)
T ss_dssp HHHHHHHTTS-THHHHHHHHHHSSCCCTEEEEEE-STT-EEEEEEEEESTCHHHHHHHHCCS-S---HHHHHH
T ss_pred HHHHHHHhCCchhhhheeeeccccCCCCeEEEeccCCCceEEEEEEccCCcHHHHHHHHHHhcCcCCHHHHHH
Confidence 46889999999988 4577888775 1122223333444455555555666655443
No 98
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=26.31 E-value=2.3e+02 Score=24.26 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=40.5
Q ss_pred ccEEEecC----CcHHHHHHHHHhcCCCceEeccccC-ccC---C---cHHHHHHHHHcCcceEEecCC
Q 030851 10 ARAIGVSN----FSLKKLGDLLEIARIPPAVNQVECH-PAW---Q---QTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 10 Ir~iGvS~----~~~~~i~~~~~~~~~~~~~~q~~~n-~~~---~---~~~~~~~~~~~gi~via~~~l 67 (170)
++.++|.. .+++.+++..+..++++.++.-.++ +.- . ...++++|+++|+-||=--+.
T Consensus 201 ~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y 269 (459)
T COG1167 201 ARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYY 269 (459)
T ss_pred CcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcc
Confidence 46777764 6789999988776666666554443 221 1 158999999999999975554
No 99
>PRK10206 putative oxidoreductase; Provisional
Probab=26.28 E-value=1.5e+02 Score=24.18 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 030851 23 LGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK 91 (170)
Q Consensus 23 i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~~ 91 (170)
++++++..+++..++ ..+.....++...|.++|+.|++=+|++. ..-..+++.++|++.++
T Consensus 56 ~~ell~~~~iD~V~I---~tp~~~H~~~~~~al~aGkhVl~EKPla~-----~~~ea~~l~~~a~~~~~ 116 (344)
T PRK10206 56 LDEVLNDPDVKLVVV---CTHADSHFEYAKRALEAGKNVLVEKPFTP-----TLAEAKELFALAKSKGL 116 (344)
T ss_pred HHHHhcCCCCCEEEE---eCCchHHHHHHHHHHHcCCcEEEecCCcC-----CHHHHHHHHHHHHHhCC
No 100
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=26.07 E-value=2.4e+02 Score=22.19 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=34.8
Q ss_pred EEecCCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecC
Q 030851 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 13 iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~ 66 (170)
+.+=+++++.++++++.+ ...++-+ +......++++.++++|..++++-.
T Consensus 79 lSIDT~~~~v~e~al~~G--~~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 79 ISVDTFRAEVARAALEAG--ADIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred EEEeCCCHHHHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 667778899999988864 2233322 3333236899999999999999654
No 101
>PRK13753 dihydropteroate synthase; Provisional
Probab=25.93 E-value=2.3e+02 Score=22.85 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=40.5
Q ss_pred hhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCC
Q 030851 2 EALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 2 ~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l 67 (170)
+.+++.+. -|.|-++.++.++++++.. .. .++ ..+-+. .+.+++.+.+.+++++.+-..
T Consensus 70 ~~l~~~~~--~ISIDT~~~~va~~al~aG-ad-iIN--DVsg~~-d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 70 DALSDQMH--RVSIDSFQPETQRYALKRG-VG-YLN--DIQGFP-DPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred HHHHhCCC--cEEEECCCHHHHHHHHHcC-CC-EEE--eCCCCC-chHHHHHHHHcCCCEEEEecC
Confidence 34555542 4888899999999998753 32 222 223332 578899999999999887764
No 102
>PRK06361 hypothetical protein; Provisional
Probab=25.85 E-value=2.8e+02 Score=20.64 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=8.0
Q ss_pred HHHHHHHHcCcceEE
Q 030851 49 KLQAFCKSKGVHLSG 63 (170)
Q Consensus 49 ~~~~~~~~~gi~via 63 (170)
.+++.|.++|+.+=.
T Consensus 126 ~~~~~~~~~~~~lEi 140 (212)
T PRK06361 126 EEAELAAENGVFLEI 140 (212)
T ss_pred HHHHHHHHcCeEEEE
Confidence 455555555554444
No 103
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=25.44 E-value=1.5e+02 Score=23.85 Aligned_cols=71 Identities=8% Similarity=0.069 Sum_probs=42.5
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc------HHHHHHHHHcCcceEEecCCCCCCCC-----C-CCCCcHHHHHHH
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGYSPLGSAKNT-----H-RVLQNPIVNTVA 86 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~via~~~l~~gg~~-----~-~~~~~~~l~~~a 86 (170)
+.+.+.++++. .|..+++.=|-+.-+ +++.++|+..|+.|=+=--.-+|..- . .+-+++...++.
T Consensus 89 ~~e~i~~ai~~---GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv 165 (285)
T PRK07709 89 SFEKCKEAIDA---GFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLV 165 (285)
T ss_pred CHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHH
Confidence 34555555543 457777777765543 68999999999888663333222100 0 133456667777
Q ss_pred HHhCCC
Q 030851 87 EKLGKS 92 (170)
Q Consensus 87 ~~~~~s 92 (170)
++.|++
T Consensus 166 ~~TgvD 171 (285)
T PRK07709 166 EATGID 171 (285)
T ss_pred HHhCCC
Confidence 776665
No 104
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=25.35 E-value=2.2e+02 Score=23.04 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=42.7
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc------HHHHHHHHHcCcceEEecCCCCCCCC-------CC-CCCcHHHHH
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGYSPLGSAKNT-------HR-VLQNPIVNT 84 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~via~~~l~~gg~~-------~~-~~~~~~l~~ 84 (170)
+.+.+.++++. .|..+++.=|.+..+ .++.++|+..|+.|=+=----+|..- .. +-+++...+
T Consensus 86 ~~e~i~~ai~~---GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~ 162 (286)
T PRK12738 86 SLDDIRRKVHA---GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKR 162 (286)
T ss_pred CHHHHHHHHHc---CCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHH
Confidence 44555555543 557777777766543 68999999999877552222122100 01 334566777
Q ss_pred HHHHhCCCH
Q 030851 85 VAEKLGKSP 93 (170)
Q Consensus 85 ~a~~~~~s~ 93 (170)
+.++.|++.
T Consensus 163 Fv~~TgvD~ 171 (286)
T PRK12738 163 FVELTGVDS 171 (286)
T ss_pred HHHHhCCCE
Confidence 777777653
No 105
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=25.26 E-value=3.4e+02 Score=21.41 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=38.9
Q ss_pred EEecCCcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCC
Q 030851 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 13 iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~g 70 (170)
+.+-+++++.++++++.+...+.++-+.... .....+++.+++.|..++++.....|
T Consensus 72 lsIDT~~~~v~eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~~~~g 128 (261)
T PRK07535 72 LCIDSPNPAAIEAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTMDDTG 128 (261)
T ss_pred EEEeCCCHHHHHHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEecCCCC
Confidence 6677788999999998765444444443221 22468899999999999987654343
No 106
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=25.25 E-value=1.3e+02 Score=25.90 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=41.0
Q ss_pred HhhcCCccEEEecCCcHHHHHHHHHhcCC-----C-ceEeccccCccCCc--HHHHHHHHHcCcceEEec
Q 030851 4 LYDSGKARAIGVSNFSLKKLGDLLEIARI-----P-PAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYS 65 (170)
Q Consensus 4 l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~-----~-~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~ 65 (170)
+-+.|-+..+|....+++++++.+...+- . +-++-+ .+.-+.. ..+++.|.++++.++..+
T Consensus 39 Vs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 39 MGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 44788999999999999999877655431 2 333332 1211222 478999999999887654
No 107
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=24.82 E-value=26 Score=21.18 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=27.3
Q ss_pred CCCHHHHHHhhcccCCCCCHHHHHhchhhhcccc
Q 030851 112 SANEARLKENFDIFDWYIPEDLLAKFPEIEQERL 145 (170)
Q Consensus 112 ~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 145 (170)
+++.+-|+..++-....||.+|+..+.++...|.
T Consensus 6 css~dtLEkv~e~~~~~L~~~e~~~f~~AaDHR~ 39 (57)
T PF05321_consen 6 CSSLDTLEKVIEHNRYKLTDDELEAFNSAADHRR 39 (57)
T ss_dssp SS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred cCCHhhHHHHHHHhhCcCCHHHHHHHHHHHHHHH
Confidence 5778888888888888999999999999988654
No 108
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.75 E-value=78 Score=24.30 Aligned_cols=102 Identities=10% Similarity=-0.019 Sum_probs=56.3
Q ss_pred ecCCcHHHHHHHHHh-cCCCceEeccccCccCCcHHHHHHHH-HcCc--ceEEecCCCCCCCCCCCCCcHHHHHHHHH--
Q 030851 15 VSNFSLKKLGDLLEI-ARIPPAVNQVECHPAWQQTKLQAFCK-SKGV--HLSGYSPLGSAKNTHRVLQNPIVNTVAEK-- 88 (170)
Q Consensus 15 vS~~~~~~i~~~~~~-~~~~~~~~q~~~n~~~~~~~~~~~~~-~~gi--~via~~~l~~gg~~~~~~~~~~l~~~a~~-- 88 (170)
+...+.+....+.+. ....+.++.+.++--. .-+.++..+ +.+- .++ ++.| ..++.+..+...+.
T Consensus 19 ir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~-a~~~i~~l~~~~~~~p~~~----vGaG----TV~~~~~~~~a~~aGA 89 (213)
T PRK06552 19 VRGESKEEALKISLAVIKGGIKAIEVTYTNPF-ASEVIKELVELYKDDPEVL----IGAG----TVLDAVTARLAILAGA 89 (213)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCcc-HHHHHHHHHHHcCCCCCeE----Eeee----eCCCHHHHHHHHHcCC
Confidence 334455555444332 2245577887776211 234444444 3321 121 1222 45555555444322
Q ss_pred -hCCCH--HHHHHHhhhcCCCEEeecCCCHHHHHHhhccc
Q 030851 89 -LGKSP--AQVALRWGLQMGHSVLPKSANEARLKENFDIF 125 (170)
Q Consensus 89 -~~~s~--~qlal~~~l~~~~~~i~g~~~~~~l~enl~a~ 125 (170)
+=+|| ..-.++++...+...+||+.++.++.+.+++.
T Consensus 90 ~FivsP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~G 129 (213)
T PRK06552 90 QFIVSPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEAG 129 (213)
T ss_pred CEEECCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcC
Confidence 11233 34567888888999999999999999988663
No 109
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=24.74 E-value=2.3e+02 Score=24.16 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=36.8
Q ss_pred EEEecCC-c--HHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecC
Q 030851 12 AIGVSNF-S--LKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 12 ~iGvS~~-~--~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~ 66 (170)
.|++|.| . +..+.+.+...+- .+.-+..|++..+.++..+..+.||.|.++.-
T Consensus 38 ~i~~~~hl~~~ta~l~~~L~~~GA--~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~ 93 (413)
T cd00401 38 RIAGCLHMTVQTAVLIETLVALGA--EVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKG 93 (413)
T ss_pred EEEEEEcchHHHHHHHHHHHHcCC--EEEEEcCCCccchHHHHHHHHhcCceEEEEcC
Confidence 5777776 2 3344444555554 45555667888889999999999999999543
No 110
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.71 E-value=99 Score=18.42 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCcceEEecCCC
Q 030851 48 TKLQAFCKSKGVHLSGYSPLG 68 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~ 68 (170)
.++++.|+++|+..++..-..
T Consensus 18 ~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 18 EELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHcCCCEEEEeeCC
Confidence 689999999999999877764
No 111
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=24.62 E-value=2e+02 Score=23.25 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=34.8
Q ss_pred EEEecCCcHHHHHHHHHhcCCCceEeccccCccCC---cHHHHHHHHHcCcceEEecCC
Q 030851 12 AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQ---QTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 12 ~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~---~~~~~~~~~~~gi~via~~~l 67 (170)
..|=|.++...+..+++...+ +++|...+.+-- ...+...|++.|+.++..+.+
T Consensus 227 a~dEs~~~~~~~~~~~~~~~~--dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~ 283 (324)
T TIGR01928 227 CLDESITSLDDARNLIELGNV--KVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGML 283 (324)
T ss_pred eeCCCcCCHHHHHHHHHcCCC--CEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceE
Confidence 445556777777777655433 666666554332 257888888888888875544
No 112
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=24.56 E-value=2.7e+02 Score=22.43 Aligned_cols=71 Identities=7% Similarity=0.058 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCceEeccccCccCCc------HHHHHHHHHcCcceEEecCCCCCCCC-------CC-CCCcHHHHHH
Q 030851 20 LKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGYSPLGSAKNT-------HR-VLQNPIVNTV 85 (170)
Q Consensus 20 ~~~i~~~~~~~~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~via~~~l~~gg~~-------~~-~~~~~~l~~~ 85 (170)
.+.+.++++. .|..+++.-|-+... +++.++|+..|+.|=+=----+|... .. +-+++...++
T Consensus 87 ~e~i~~ai~~---GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~F 163 (284)
T PRK12737 87 LDDIKKKVRA---GIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEF 163 (284)
T ss_pred HHHHHHHHHc---CCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHH
Confidence 4455555443 457777777766543 58999999999887653222222100 01 3345667778
Q ss_pred HHHhCCCH
Q 030851 86 AEKLGKSP 93 (170)
Q Consensus 86 a~~~~~s~ 93 (170)
.++.|++.
T Consensus 164 v~~TgvD~ 171 (284)
T PRK12737 164 VERTGIDS 171 (284)
T ss_pred HHHhCCCE
Confidence 77777653
No 113
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=24.48 E-value=2.4e+02 Score=21.93 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=8.3
Q ss_pred HHHHHHHHcCcceEEe
Q 030851 49 KLQAFCKSKGVHLSGY 64 (170)
Q Consensus 49 ~~~~~~~~~gi~via~ 64 (170)
.+...|+++|+.++..
T Consensus 222 ~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 222 RVLAVAEALGLPVMVG 237 (265)
T ss_pred HHHHHHHHcCCcEEec
Confidence 4555555555555544
No 114
>PLN02494 adenosylhomocysteinase
Probab=24.11 E-value=2.3e+02 Score=24.82 Aligned_cols=55 Identities=15% Similarity=0.012 Sum_probs=40.7
Q ss_pred EEEecCC-c--HHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCC
Q 030851 12 AIGVSNF-S--LKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLG 68 (170)
Q Consensus 12 ~iGvS~~-~--~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~ 68 (170)
.||.|-| + +..+.+.+...+- .+.-+..|++..+.++..+..+.||.|.||..-.
T Consensus 48 ~i~~~lHl~~kTa~L~~tL~~~GA--~v~~~~~Np~sTqd~vaaal~~~gi~vfa~~g~~ 105 (477)
T PLN02494 48 RITGSLHMTIQTAVLIETLTALGA--EVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGET 105 (477)
T ss_pred EEEEEEechHHHHHHHHHHHHcCC--EEEEEcCCCccchHHHHHHHHhCCceEEEecCCC
Confidence 6788876 3 3344455555554 5666778899999999999999999999987653
No 115
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=23.94 E-value=2.5e+02 Score=23.17 Aligned_cols=62 Identities=8% Similarity=0.001 Sum_probs=40.2
Q ss_pred CccEEEec-----CCcHHHHHHHHHhc------CCCceEeccccCccCC---cHHHHHHHHHcCcceEEecCCCCC
Q 030851 9 KARAIGVS-----NFSLKKLGDLLEIA------RIPPAVNQVECHPAWQ---QTKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 9 ~Ir~iGvS-----~~~~~~i~~~~~~~------~~~~~~~q~~~n~~~~---~~~~~~~~~~~gi~via~~~l~~g 70 (170)
++..+.+. ..+++.+++.++.. +.+..++....+..-. -.++.+.|+++|+.++.-...+.|
T Consensus 125 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g 200 (387)
T PRK09331 125 NVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVG 200 (387)
T ss_pred EEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccC
Confidence 45555551 15788888877642 3445555544442221 168999999999999988877654
No 116
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=23.88 E-value=2.2e+02 Score=24.29 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHhcC---CCceEeccccCccC-Cc------HHHHHHHHHcCcceEEec
Q 030851 17 NFSLKKLGDLLEIAR---IPPAVNQVECHPAW-QQ------TKLQAFCKSKGVHLSGYS 65 (170)
Q Consensus 17 ~~~~~~i~~~~~~~~---~~~~~~q~~~n~~~-~~------~~~~~~~~~~gi~via~~ 65 (170)
|++...++++++..+ +...+.-+.-|... |. +.+.+.|++.||.++--+
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da 226 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDA 226 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeeh
Confidence 678888999988776 34444444445444 32 589999999999998743
No 117
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=23.88 E-value=3.2e+02 Score=22.92 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=38.0
Q ss_pred ccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCC
Q 030851 10 ARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 10 Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~g 70 (170)
++-.-+...+.+.++++++. +.+..++..+-|+.-.- ..+.+.|+++|+-++.-...+.+
T Consensus 118 i~v~~vd~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 118 FKVQFVDQSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred eEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 33333444566777665532 44556665565554332 68999999999999987777553
No 118
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=23.84 E-value=2.3e+02 Score=23.75 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=39.0
Q ss_pred hHhhcCCcc-EEEecCCcHHHHHHHHHhcCCCceEeccccCccC---CcHHHHHHHHHcCcceEEecCC
Q 030851 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 3 ~l~~~G~Ir-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~via~~~l 67 (170)
+|++...+- ..|=|.++...+.++++... .+++|.....+- ...++.++|+++|+.+...+..
T Consensus 255 ~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 255 EFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 344443333 44555567777777776543 366776654333 2258888888999888776543
No 119
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=23.81 E-value=2.4e+02 Score=23.14 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHhcCCCceEeccccCccCCc-HHHHHHHHHcCcceEEecC
Q 030851 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 18 ~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~via~~~ 66 (170)
.+++.+++++...+.+..++..+.+....+ .++.+.|+++|+-++.-..
T Consensus 148 id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 148 IDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred cCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 478888887754444444443333333323 6899999999988888775
No 120
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=23.75 E-value=2.5e+02 Score=23.32 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCC
Q 030851 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 18 ~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~g 70 (170)
.+++.+++.+.. +.+..++..+.|+.-.. ..+.+.|+++|+.++.-.+.+.+
T Consensus 134 ~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~ 188 (388)
T PRK07811 134 SDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASP 188 (388)
T ss_pred CCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 467777766532 44556666666764332 68999999999999988776543
No 121
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=23.46 E-value=3.3e+02 Score=20.51 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCCHHHHHHHhhhcCC--CEEeecCC--CHHHHHHhhccc
Q 030851 90 GKSPAQVALRWGLQMG--HSVLPKSA--NEARLKENFDIF 125 (170)
Q Consensus 90 ~~s~~qlal~~~l~~~--~~~i~g~~--~~~~l~enl~a~ 125 (170)
..|-.++|++|+.+++ .+.|.|+. ..+|.-.|+..+
T Consensus 71 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 71 DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4577889999999886 35666644 578888888764
No 122
>PRK05939 hypothetical protein; Provisional
Probab=23.02 E-value=3.2e+02 Score=22.86 Aligned_cols=52 Identities=12% Similarity=0.226 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCC
Q 030851 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 18 ~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~g 70 (170)
.+++.+++++. .+.+..++..+.|+.-.- ..+.+.|+++|+-++.-.+.+.+
T Consensus 119 ~d~e~l~~~l~-~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~ 173 (397)
T PRK05939 119 TDVQNVAAAIR-PNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSP 173 (397)
T ss_pred CCHHHHHHhCC-CCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccc
Confidence 35677776653 234555565555654432 58999999999999988877554
No 123
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=22.85 E-value=2.6e+02 Score=23.07 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=41.0
Q ss_pred hHhhcCCcc-EEEecCCcHHHHHHHHHhcCCCceEeccccCccC---CcHHHHHHHHHcCcceEEecCC
Q 030851 3 ALYDSGKAR-AIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 3 ~l~~~G~Ir-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~via~~~l 67 (170)
+|++...+. ..|=|.+++..+.++++..- ++++|.....+- ...++.+.|+++|+.++..+..
T Consensus 208 ~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 208 LIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 445554443 55566678888888876543 477777765433 2258889999999888875443
No 124
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=22.77 E-value=2.5e+02 Score=23.27 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=35.7
Q ss_pred CccEEEec----CCcHHHHHHHHHhcCCCceEeccccCccCCc-HHHHHHHHHcCcceEEecC
Q 030851 9 KARAIGVS----NFSLKKLGDLLEIARIPPAVNQVECHPAWQQ-TKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 9 ~Ir~iGvS----~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~gi~via~~~ 66 (170)
++..+++. ..+++.++++++..+.+..++....+....+ .++.+.|+++|+-++.-..
T Consensus 139 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a 201 (416)
T PRK00011 139 NVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMA 201 (416)
T ss_pred eEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECc
Confidence 45566654 3578888888764444444442222222222 6899999999988876654
No 125
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=22.68 E-value=3e+02 Score=22.57 Aligned_cols=51 Identities=8% Similarity=0.115 Sum_probs=35.2
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCC
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~g 70 (170)
+++.++++++. +.+..++....|+.-.- ..+.+.|+++|+.++.-...+.+
T Consensus 114 d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~ 167 (369)
T cd00614 114 DPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATP 167 (369)
T ss_pred CHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcch
Confidence 46666666532 44556666666654422 68999999999999988877554
No 126
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=22.48 E-value=3.6e+02 Score=22.66 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=38.4
Q ss_pred hhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEecccc------CccCCcHHHHHHHHHcCcceEE
Q 030851 2 EALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVEC------HPAWQQTKLQAFCKSKGVHLSG 63 (170)
Q Consensus 2 ~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~------n~~~~~~~~~~~~~~~gi~via 63 (170)
+++++.|.+-.+.++..+..++.+.+..++.+..+++... +--.....+.+++++.++.|++
T Consensus 126 ~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 126 AEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred HHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 4556666555666655566666666666777666655322 2111124688888888998886
No 127
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=22.37 E-value=3.4e+02 Score=21.35 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=17.5
Q ss_pred hhcCCccEEEecCCcHHHHHHHHHh
Q 030851 5 YDSGKARAIGVSNFSLKKLGDLLEI 29 (170)
Q Consensus 5 ~~~G~Ir~iGvS~~~~~~i~~~~~~ 29 (170)
++.+..+.+=+|+|+++.+..+...
T Consensus 170 ~~~~~~~~v~isSF~~~~l~~~~~~ 194 (290)
T cd08607 170 LEHAGKRRIIFSSFDADICTMLRFK 194 (290)
T ss_pred HHhCCCCCEEEEcCCHHHHHHHHHh
Confidence 3445566777999999877766553
No 128
>PRK11579 putative oxidoreductase; Provisional
Probab=22.37 E-value=2.2e+02 Score=23.17 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 030851 23 LGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAEKLGK 91 (170)
Q Consensus 23 i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~~~~~ 91 (170)
++++++..+++..++- ++.....++...|.++|..|++=+|++. ..-...++.+.|++.|+
T Consensus 56 ~~ell~~~~vD~V~I~---tp~~~H~~~~~~al~aGkhVl~EKPla~-----t~~ea~~l~~~a~~~g~ 116 (346)
T PRK11579 56 PQHLFNDPNIDLIVIP---TPNDTHFPLAKAALEAGKHVVVDKPFTV-----TLSQARELDALAKSAGR 116 (346)
T ss_pred HHHHhcCCCCCEEEEc---CCcHHHHHHHHHHHHCCCeEEEeCCCCC-----CHHHHHHHHHHHHHhCC
No 129
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=22.35 E-value=2.8e+02 Score=23.65 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=36.5
Q ss_pred EEEecCC-c--HHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecC
Q 030851 12 AIGVSNF-S--LKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 12 ~iGvS~~-~--~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~ 66 (170)
.|++|.| . +..+.+.+...+- .+.-+..|+++.+.++..+..+.||.|.++.-
T Consensus 34 ~i~~~~hl~~~Ta~l~~~L~~~GA--~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~ 89 (406)
T TIGR00936 34 RIAACLHVTVETAVLIETLVAGGA--EVAWTSCNPLSTQDDVAAALAKAGIPVFAWRG 89 (406)
T ss_pred EEEEEEechHHHHHHHHHHHHcCC--EEEEEccCCccccHHHHHHHHhCCceEEEecC
Confidence 5777765 3 3334444455554 45555667777888999999999999998763
No 130
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=22.27 E-value=2.7e+02 Score=23.42 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=35.4
Q ss_pred cCCcHHHHHHHHHhcCC-----------CceEecc---ccCccCCc------HHHHHHHHHcCcceEEecCC
Q 030851 16 SNFSLKKLGDLLEIARI-----------PPAVNQV---ECHPAWQQ------TKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 16 S~~~~~~i~~~~~~~~~-----------~~~~~q~---~~n~~~~~------~~~~~~~~~~gi~via~~~l 67 (170)
+.|++++..++.+.++. .|++... .||..+.. .++.++|+++||.+-.|-+.
T Consensus 79 ~~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~ 150 (384)
T smart00812 79 EKFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL 150 (384)
T ss_pred hhCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH
Confidence 45788888888887773 2333333 34444332 58999999999999887664
No 131
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=22.19 E-value=3.4e+02 Score=22.58 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=35.9
Q ss_pred ecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCCC
Q 030851 15 VSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 15 vS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~g 70 (170)
+...+++.++++++. +.+..++..+-|+.-.- ..+.+.|+++|+-++.-...+.+
T Consensus 122 vd~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 122 VDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred eCCCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 344567777766532 44556666555553322 68999999999999887776553
No 132
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=22.15 E-value=1.7e+02 Score=20.35 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=35.2
Q ss_pred cEEEecC-CcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEE
Q 030851 11 RAIGVSN-FSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSG 63 (170)
Q Consensus 11 r~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via 63 (170)
|-.|.|. .+++.++++++...-.+.+=--++..+....+..++++++++.|+.
T Consensus 41 rK~GTSHkl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~ 94 (121)
T COG1504 41 RKYGTSHKLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIE 94 (121)
T ss_pred hhcCcccccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEE
Confidence 3467776 5889999988743222222223344555568899999999988876
No 133
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=22.07 E-value=2.5e+02 Score=21.47 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=8.7
Q ss_pred HHHHHHHHHcCcceEE
Q 030851 48 TKLQAFCKSKGVHLSG 63 (170)
Q Consensus 48 ~~~~~~~~~~gi~via 63 (170)
+++.+||+++|+.++.
T Consensus 176 ~~~~~fA~~~~l~~is 191 (199)
T TIGR00506 176 PELMEYAKKHNLKLIS 191 (199)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 4555555555555544
No 134
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=22.02 E-value=2.1e+02 Score=23.47 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=23.0
Q ss_pred CcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCC
Q 030851 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 18 ~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l 67 (170)
++.+.+.++++.... +++|+..+.+---..+++.|+++|+.++..+.+
T Consensus 194 ~~~~d~~~l~~~~a~--dvi~ik~~~~GGit~~lkiA~~~gi~v~v~s~~ 241 (327)
T PRK02901 194 RRAEDPLRVARAGAA--DVAVLKVAPLGGVRAALDIAEQIGLPVVVSSAL 241 (327)
T ss_pred CCHHHHHHHHHcCCC--CEEEeCcchhCCHHHHHHHHHHcCCcEEEeCCc
Confidence 344444444433222 444444443332345555666666666665444
No 135
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=22.00 E-value=4e+02 Score=21.39 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=22.8
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEE
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSG 63 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via 63 (170)
+.+++.++++.+.....+ +-|++.++. ..+.+.|..+||.++-
T Consensus 44 ~~~~~~~i~~~~~~~~~i--V~~Tlv~~elr~~l~~~~~~~~i~~vd 88 (269)
T PRK05339 44 TEEKADEVLEEINAERPI--VFYTLVDPELREILEERCAEFGIPCID 88 (269)
T ss_pred CHHHHHHHHHHHHhcCCE--EEEeCCCHHHHHHHHHHHHHcCCCEEe
Confidence 455566555554421111 223455555 3455888888777664
No 136
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=21.74 E-value=2.8e+02 Score=22.59 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=27.2
Q ss_pred CCcHHHHHHHHHhcCCCceEeccccCccC---CcHHHHHHHHHcCcceEEe
Q 030851 17 NFSLKKLGDLLEIARIPPAVNQVECHPAW---QQTKLQAFCKSKGVHLSGY 64 (170)
Q Consensus 17 ~~~~~~i~~~~~~~~~~~~~~q~~~n~~~---~~~~~~~~~~~~gi~via~ 64 (170)
.++++.+.++++.... +++|+....+- ...++.+.|+++|+.++..
T Consensus 249 ~~~~~~~~~~i~~~~~--d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~ 297 (357)
T cd03316 249 LYTRWEFRDLLEAGAV--DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPH 297 (357)
T ss_pred cccHHHHHHHHHhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCeEecc
Confidence 3566666666654433 66666544332 1246777777777776654
No 137
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.68 E-value=3.6e+02 Score=22.90 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=34.8
Q ss_pred ecCCcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCC
Q 030851 15 VSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 15 vS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~ 69 (170)
+...+++.++++++. +.+..++..+-|+.-.. .++.++|+++|+-++.-.+++.
T Consensus 134 vd~~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~ 190 (431)
T PRK08248 134 VDPSDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFAS 190 (431)
T ss_pred ECCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCc
Confidence 333467777766542 34445555444543322 6899999999999998887753
No 138
>PRK07503 methionine gamma-lyase; Provisional
Probab=21.55 E-value=3.3e+02 Score=22.81 Aligned_cols=51 Identities=6% Similarity=0.042 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCC
Q 030851 18 FSLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 18 ~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~ 69 (170)
.+++.+++.++. +.+..++..+.|+.-.. ..+.+.|+++|+.++.-.+.+.
T Consensus 138 ~d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~ 191 (403)
T PRK07503 138 TDPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCT 191 (403)
T ss_pred CCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence 356777666532 34455555555554432 6899999999999998887754
No 139
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=21.53 E-value=3.3e+02 Score=19.83 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=35.8
Q ss_pred CCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc-------HHHHHHHHHcCcceEEecCC
Q 030851 8 GKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ-------TKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 8 G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~-------~~~~~~~~~~gi~via~~~l 67 (170)
|.=+.||+|.|+.++++++.+ .+.+..++--.|.--... ..+-++++...+.|++..-.
T Consensus 93 ~~~~~ig~S~h~~~e~~~a~~-~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI 158 (180)
T PF02581_consen 93 GPDKIIGASCHSLEEAREAEE-LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI 158 (180)
T ss_dssp TTTSEEEEEESSHHHHHHHHH-CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS-
T ss_pred ccceEEEeecCcHHHHHHhhh-cCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC
Confidence 344689999999999888763 334334433333211111 46777788888888885443
No 140
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=21.30 E-value=4e+02 Score=21.45 Aligned_cols=72 Identities=8% Similarity=0.034 Sum_probs=42.7
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc------HHHHHHHHHcCcceEEecCCCCCCCC--------CCCCCcHHHHH
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGYSPLGSAKNT--------HRVLQNPIVNT 84 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~via~~~l~~gg~~--------~~~~~~~~l~~ 84 (170)
+.+.+.++++. .|..+++.=|.+..+ .++.++|+..|+.|=+=----+|..- ..+-+++...+
T Consensus 84 ~~e~i~~ai~~---GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~ 160 (282)
T TIGR01858 84 SLDDIRQKVHA---GVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKE 160 (282)
T ss_pred CHHHHHHHHHc---CCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHH
Confidence 34555555443 457777777766543 58999999999877553222222000 01334466777
Q ss_pred HHHHhCCCH
Q 030851 85 VAEKLGKSP 93 (170)
Q Consensus 85 ~a~~~~~s~ 93 (170)
+.++.|++.
T Consensus 161 Fv~~TgvD~ 169 (282)
T TIGR01858 161 FVEATGVDS 169 (282)
T ss_pred HHHHHCcCE
Confidence 777777753
No 141
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=21.28 E-value=2.4e+02 Score=19.88 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=32.0
Q ss_pred cHHHHHHHHHhcC-CCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCC
Q 030851 19 SLKKLGDLLEIAR-IPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 19 ~~~~i~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~ 69 (170)
+++.+++.++.+. +.+..+-+--+.-.....+...|++.||++=.|+.=+.
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~AA 107 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTGAA 107 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccchhh
Confidence 4555666655443 33344444444444457899999999998888776644
No 142
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=21.28 E-value=2.2e+02 Score=22.29 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=7.7
Q ss_pred HHHHHHHHHcCcceEE
Q 030851 48 TKLQAFCKSKGVHLSG 63 (170)
Q Consensus 48 ~~~~~~~~~~gi~via 63 (170)
.++.+||+++|+.++.
T Consensus 191 ~~l~~fA~~~~l~iis 206 (230)
T PRK00014 191 ASLERYAAKEGLVALA 206 (230)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 3455555555544444
No 143
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.98 E-value=4e+02 Score=20.55 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=11.5
Q ss_pred HHHHHHHHcCcceEEecCC
Q 030851 49 KLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 49 ~~~~~~~~~gi~via~~~l 67 (170)
..+++|+..|...+...+.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred HHHHHHHHhCCCEEEEcCC
Confidence 4556666666666655543
No 144
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=20.86 E-value=2.4e+02 Score=21.85 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=8.4
Q ss_pred HHHHHHHHHcCcceEE
Q 030851 48 TKLQAFCKSKGVHLSG 63 (170)
Q Consensus 48 ~~~~~~~~~~gi~via 63 (170)
.++.+||+++|+.++.
T Consensus 187 ~~l~~fA~~h~l~~is 202 (218)
T PRK00910 187 PEIIAFGKLHNMPVLT 202 (218)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 3555555555555544
No 145
>PHA02128 hypothetical protein
Probab=20.84 E-value=2e+02 Score=19.85 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=41.1
Q ss_pred hhHhhcCCccEEEecCCcHHHHHHH-----------------HHhcC-CCc-eEeccccCccCCc--HHHHHHHHHcCcc
Q 030851 2 EALYDSGKARAIGVSNFSLKKLGDL-----------------LEIAR-IPP-AVNQVECHPAWQQ--TKLQAFCKSKGVH 60 (170)
Q Consensus 2 ~~l~~~G~Ir~iGvS~~~~~~i~~~-----------------~~~~~-~~~-~~~q~~~n~~~~~--~~~~~~~~~~gi~ 60 (170)
+++..+|-+|-|-+...+...+..+ ...+. ++| .+-..+|.+..+. .++++++-.+|+.
T Consensus 67 ne~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwagthgve 146 (151)
T PHA02128 67 NEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWAGTHGVE 146 (151)
T ss_pred HHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhcccCceE
Confidence 4677888888888776655554433 22222 222 3334556666654 6899999999999
Q ss_pred eEEe
Q 030851 61 LSGY 64 (170)
Q Consensus 61 via~ 64 (170)
++.+
T Consensus 147 fvim 150 (151)
T PHA02128 147 FVIM 150 (151)
T ss_pred EEEe
Confidence 8875
No 146
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=20.83 E-value=4.7e+02 Score=21.37 Aligned_cols=36 Identities=14% Similarity=0.002 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHHHH
Q 030851 48 TKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTVAE 87 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~a~ 87 (170)
.+.++.+++.|+.+....++..| ...+.+.+.++.+
T Consensus 240 ~~ai~~L~~aGi~v~~qtvLl~g----vnD~~~~l~~L~~ 275 (331)
T TIGR00238 240 AEAMKKLRTVNVTLLNQSVLLRG----VNDRAQILAKLSI 275 (331)
T ss_pred HHHHHHHHHcCCEEEeecceECC----cCCCHHHHHHHHH
Confidence 46777788999999999999886 4444454555544
No 147
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=20.78 E-value=1.4e+02 Score=22.49 Aligned_cols=65 Identities=18% Similarity=0.067 Sum_probs=39.6
Q ss_pred hHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCc---cCCcHHHHHHHHHcCcceEEecCCCCC
Q 030851 3 ALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHP---AWQQTKLQAFCKSKGVHLSGYSPLGSA 70 (170)
Q Consensus 3 ~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~---~~~~~~~~~~~~~~gi~via~~~l~~g 70 (170)
++...|- ..+-+.-.+.+.|.++++-.+. .++-+.... ......+++.|++.||..+.++.+...
T Consensus 39 ~l~~~g~-~vv~~d~~~~~~l~~al~g~d~--v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 39 QLQALGA-EVVEADYDDPESLVAALKGVDA--VFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHTTT-EEEES-TT-HHHHHHHHTTCSE--EEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhcccc-eEeecccCCHHHHHHHHcCCce--EEeecCcchhhhhhhhhhHHHhhhccccceEEEEEeccc
Confidence 4455655 3555555678888888764432 333333221 112268999999999999999999664
No 148
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=20.71 E-value=2.9e+02 Score=22.36 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=43.7
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc------HHHHHHHHHcCcceEEecCCCCCCCC------CCCCCcHHHHHHH
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGYSPLGSAKNT------HRVLQNPIVNTVA 86 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~via~~~l~~gg~~------~~~~~~~~l~~~a 86 (170)
+.+.++++++. .|..+++.=|.++-+ .++.++|+..|+.|=+=--.-+|..- ..+-+++...++.
T Consensus 89 ~~e~i~~ai~~---GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv 165 (286)
T PRK08610 89 SFEKCKEAIDA---GFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELV 165 (286)
T ss_pred CHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHH
Confidence 45666665543 567777777766643 58999999999887663322222100 0133456667777
Q ss_pred HHhCCCH
Q 030851 87 EKLGKSP 93 (170)
Q Consensus 87 ~~~~~s~ 93 (170)
++.|++.
T Consensus 166 ~~TgvD~ 172 (286)
T PRK08610 166 EKTGIDA 172 (286)
T ss_pred HHHCCCE
Confidence 7777653
No 149
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.68 E-value=1.5e+02 Score=25.33 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCcceEEecCCCCCCCC
Q 030851 48 TKLQAFCKSKGVHLSGYSPLGSAKNT 73 (170)
Q Consensus 48 ~~~~~~~~~~gi~via~~~l~~gg~~ 73 (170)
..+.+.|+++|+-+|.-....+.|..
T Consensus 246 ~~lr~lc~~~gillI~DEV~TG~GRt 271 (453)
T PRK06943 246 RGLRALCDRYGVHLIADEIAVGCGRT 271 (453)
T ss_pred HHHHHHHHHcCCEEEeechhhCCCCC
Confidence 68999999999999999987665433
No 150
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=20.55 E-value=2.4e+02 Score=24.20 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHhc---CCCceEeccccCccC-----Cc--HHHHHHHHHcCcceEEecC
Q 030851 18 FSLKKLGDLLEIA---RIPPAVNQVECHPAW-----QQ--TKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 18 ~~~~~i~~~~~~~---~~~~~~~q~~~n~~~-----~~--~~~~~~~~~~gi~via~~~ 66 (170)
.+++.+++.++.. +.+..++-.+-|+.- .. ..+.++|+++|+-++.-..
T Consensus 161 id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa 219 (460)
T PRK13238 161 FDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAA 219 (460)
T ss_pred cCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECc
Confidence 6788888887642 344455555555543 12 5799999999999998763
No 151
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=20.47 E-value=2.2e+02 Score=23.92 Aligned_cols=61 Identities=10% Similarity=0.188 Sum_probs=42.6
Q ss_pred cCCccEEEe----cCC--cHHHHHHHHHhcCCCceEeccccCccCCc------HHHHHHHHHcCcceEEecCCC
Q 030851 7 SGKARAIGV----SNF--SLKKLGDLLEIARIPPAVNQVECHPAWQQ------TKLQAFCKSKGVHLSGYSPLG 68 (170)
Q Consensus 7 ~G~Ir~iGv----S~~--~~~~i~~~~~~~~~~~~~~q~~~n~~~~~------~~~~~~~~~~gi~via~~~l~ 68 (170)
.|++..+-+ .+| +.+.++++++. +.+..++-.+=|+.-.- ..+.++|+++|+-+++-.+..
T Consensus 134 gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~ 206 (393)
T COG0436 134 GGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYE 206 (393)
T ss_pred CCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhh
Confidence 456666665 245 56778887765 66666666666655431 689999999999999866653
No 152
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=20.41 E-value=1.8e+02 Score=27.45 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=36.6
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecC
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSP 66 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~ 66 (170)
+.+.|.++.+..+. +.+.--|..++...+....|.+.||.+|.-.+
T Consensus 68 ~IdeII~iAk~~ga--DaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~ 113 (1149)
T COG1038 68 SIDEIIRIAKRSGA--DAIHPGYGFLSENPEFARACAEAGITFIGPKP 113 (1149)
T ss_pred cHHHHHHHHHHcCC--CeecCCcccccCCHHHHHHHHHcCCEEeCCCH
Confidence 45556665555555 89999999999999999999999999997443
No 153
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=20.39 E-value=3.3e+02 Score=19.38 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=20.0
Q ss_pred hHhhcCCccEEEecCCcHHHHHHHHHhc
Q 030851 3 ALYDSGKARAIGVSNFSLKKLGDLLEIA 30 (170)
Q Consensus 3 ~l~~~G~Ir~iGvS~~~~~~i~~~~~~~ 30 (170)
.+++-|.-+.+=+++|+++.+.++.+..
T Consensus 84 ~i~~~~~~~~v~i~s~~~~~l~~~~~~~ 111 (189)
T cd08556 84 LLREYGLEERVVVSSFDHEALRALKELD 111 (189)
T ss_pred HHHHcCCcCCEEEEeCCHHHHHHHHHhC
Confidence 3455666778888888888887776653
No 154
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=20.31 E-value=3e+02 Score=24.42 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=60.5
Q ss_pred ChhHhhcCCccEEEecC-CcHHHHHHHHHhcCCCceEeccccCccCCcHHHHHHHHHcCcceEEecCCCCCCCCCCCCCc
Q 030851 1 MEALYDSGKARAIGVSN-FSLKKLGDLLEIARIPPAVNQVECHPAWQQTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQN 79 (170)
Q Consensus 1 L~~l~~~G~Ir~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~ 79 (170)
+++|++-|.-...||.+ |+...+..+.+..+.+..-+-+++|.... .=-|++-+||+.+. .+++-| .
T Consensus 11 f~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYA---ADGYAR~~Gi~a~V-tTfgVG----e---- 78 (561)
T KOG1184|consen 11 FRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYA---ADGYARSKGIGACV-TTFGVG----E---- 78 (561)
T ss_pred HHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhh---hcchhhhcCceEEE-EEeccc----h----
Confidence 36788999989999998 99999999987776555555555554432 33478888988776 444443 1
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhhcCCCEEeecCCCH
Q 030851 80 PIVNTVAEKLGKSPAQVALRWGLQMGHSVLPKSANE 115 (170)
Q Consensus 80 ~~l~~~a~~~~~s~~qlal~~~l~~~~~~i~g~~~~ 115 (170)
|..+ ..+|=+|+-.-|+..|+|+-|.
T Consensus 79 --LSAl--------NGIAGsYAE~vpVihIVG~Pnt 104 (561)
T KOG1184|consen 79 --LSAL--------NGIAGAYAENVPVIHIVGVPNT 104 (561)
T ss_pred --hhhh--------cccchhhhhcCCEEEEECCCCc
Confidence 1111 1245566666676667766554
No 155
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=20.26 E-value=2.2e+02 Score=20.26 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=35.6
Q ss_pred HhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccCccCCc--HHHHHHHHHcCcceEEecCC
Q 030851 4 LYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQQ--TKLQAFCKSKGVHLSGYSPL 67 (170)
Q Consensus 4 l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~~--~~~~~~~~~~gi~via~~~l 67 (170)
|.+.| |.-+=+.+-..+.+.++.+..++.-.+..-.|....+. ..+.+.|.++||.+.....-
T Consensus 62 L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~ 126 (165)
T PF00875_consen 62 LRKLG-IPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDH 126 (165)
T ss_dssp HHHTT-S-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--S
T ss_pred HHhcC-cceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCc
Confidence 44444 23333334466777777776665555555555554443 57888899989888775544
No 156
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=20.20 E-value=2.7e+02 Score=22.85 Aligned_cols=51 Identities=8% Similarity=-0.016 Sum_probs=35.4
Q ss_pred eEeccccCccCC----cHHHHHHHHHcCcceEEecCCCCCCCCCCCCCcHHHHHH
Q 030851 35 AVNQVECHPAWQ----QTKLQAFCKSKGVHLSGYSPLGSAKNTHRVLQNPIVNTV 85 (170)
Q Consensus 35 ~~~q~~~n~~~~----~~~~~~~~~~~gi~via~~~l~~gg~~~~~~~~~~l~~~ 85 (170)
.++|++.+...- .+..++.+++.|..|+.+.+..+|+....+..++.+..+
T Consensus 237 ~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~~~~~l 291 (309)
T cd08613 237 TTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPEDLKRL 291 (309)
T ss_pred CeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCHHHHHHH
Confidence 567877765443 268999999999999999998665433344444555554
No 157
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.15 E-value=1.6e+02 Score=23.60 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=31.1
Q ss_pred hhHhhcCCccEEEecCCcHHHHHHHHHhcCCCceEeccccC
Q 030851 2 EALYDSGKARAIGVSNFSLKKLGDLLEIARIPPAVNQVECH 42 (170)
Q Consensus 2 ~~l~~~G~Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n 42 (170)
+.+.+.|+.--||.+.|+.++++++.+....-+.++.-+|+
T Consensus 87 ~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfS 127 (266)
T COG0289 87 EFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFS 127 (266)
T ss_pred HHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccch
Confidence 45667888889999999999988887777655556555554
No 158
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=20.12 E-value=1.6e+02 Score=22.44 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=25.2
Q ss_pred CCccEEEec-CCcHHHHHHHHHhcCCCceEecccc
Q 030851 8 GKARAIGVS-NFSLKKLGDLLEIARIPPAVNQVEC 41 (170)
Q Consensus 8 G~Ir~iGvS-~~~~~~i~~~~~~~~~~~~~~q~~~ 41 (170)
+.++.+||. |-+++.+.++.+..+ ++++|++-
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~~~--~d~vQLHG 83 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSNTS--INTIQLHG 83 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhCC--CCEEEECC
Confidence 568899997 678999999887654 48899874
No 159
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=20.05 E-value=2.9e+02 Score=21.35 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=6.6
Q ss_pred CcHHHHHHHHHhCC
Q 030851 78 QNPIVNTVAEKLGK 91 (170)
Q Consensus 78 ~~~~l~~~a~~~~~ 91 (170)
..+.+.++|+++++
T Consensus 184 ~~~~~~~fA~~~~l 197 (214)
T PRK01792 184 RTPEIVEFAKKFGY 197 (214)
T ss_pred CHHHHHHHHHHcCC
Confidence 33445555555543
No 160
>PLN02242 methionine gamma-lyase
Probab=20.02 E-value=2.3e+02 Score=23.91 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=35.8
Q ss_pred cHHHHHHHHHhcCCCceEeccccCccCCc---HHHHHHHHHcCcceEEecCCCC
Q 030851 19 SLKKLGDLLEIARIPPAVNQVECHPAWQQ---TKLQAFCKSKGVHLSGYSPLGS 69 (170)
Q Consensus 19 ~~~~i~~~~~~~~~~~~~~q~~~n~~~~~---~~~~~~~~~~gi~via~~~l~~ 69 (170)
+++.++++++..+.+..++..+.|+.-.- ..+.+.|+++|+.++.-.+.+.
T Consensus 151 d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~ 204 (418)
T PLN02242 151 DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAP 204 (418)
T ss_pred CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCc
Confidence 67777776643235567777777754432 6899999999999998877643
No 161
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=20.00 E-value=3e+02 Score=22.64 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=22.6
Q ss_pred EEecCCcHHHHHHHHHhcCCCceEeccccCccCC---cHHHHHHHHHcCcceEEe
Q 030851 13 IGVSNFSLKKLGDLLEIARIPPAVNQVECHPAWQ---QTKLQAFCKSKGVHLSGY 64 (170)
Q Consensus 13 iGvS~~~~~~i~~~~~~~~~~~~~~q~~~n~~~~---~~~~~~~~~~~gi~via~ 64 (170)
.|=|-++...+.++++...+ +++|+...-+-- ...+...|+.+|+.++..
T Consensus 243 ~dE~~~~~~~~~~~~~~~~~--d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~ 295 (368)
T TIGR02534 243 ADESVTGPADALAIAKASAA--DVFALKTTKSGGLLESKKIAAIAEAAGIALYGG 295 (368)
T ss_pred eCcccCCHHHHHHHHHhCCC--CEEEEcccccCCHHHHHHHHHHHHHcCCceeee
Confidence 33344455555555443322 444444332211 135555556666555443
Done!