Query 030852
Match_columns 170
No_of_seqs 116 out of 1183
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 1.6E-34 5.6E-39 235.9 11.8 123 24-156 1-232 (248)
2 1kca_A Repressor protein CI; g 99.4 5.4E-12 1.9E-16 90.5 11.0 90 30-156 14-109 (109)
3 1umu_A UMUD'; induced mutagene 99.2 1.4E-10 4.7E-15 83.6 9.9 87 29-152 27-114 (116)
4 1jhf_A LEXA repressor; LEXA SO 99.0 2.6E-09 8.8E-14 83.3 10.1 87 29-151 110-198 (202)
5 2hnf_A Repressor protein CI101 98.9 6.8E-09 2.3E-13 76.4 9.9 82 30-148 45-132 (133)
6 3bdn_A Lambda repressor; repre 98.9 4.6E-09 1.6E-13 83.2 8.6 90 30-156 141-236 (236)
7 3k2z_A LEXA repressor; winged 98.7 1.7E-07 5.8E-12 72.9 11.1 85 29-150 109-194 (196)
8 2fjr_A Repressor protein CI; g 96.7 0.0092 3.1E-07 45.0 9.0 66 56-151 122-187 (189)
9 3v2d_O 50S ribosomal protein L 71.8 24 0.00084 25.1 8.2 31 108-139 75-105 (122)
10 3r8s_K 50S ribosomal protein L 68.6 25 0.00086 25.0 7.4 34 107-140 74-107 (122)
11 3bbo_M Ribosomal protein L14; 67.0 31 0.0011 24.5 7.9 31 109-140 76-106 (121)
12 1whi_A Ribosomal protein L14; 63.8 37 0.0013 24.2 7.8 31 109-140 76-106 (122)
13 1pcq_O Groes protein; chaperon 59.5 19 0.00066 24.6 5.2 12 55-66 6-17 (97)
14 1w4s_A Polybromo, polybromo 1 58.2 11 0.00037 28.1 4.0 84 56-149 12-108 (174)
15 3nx6_A 10KDA chaperonin; bacte 55.5 13 0.00045 25.3 3.7 40 54-97 5-44 (95)
16 1vq8_K 50S ribosomal protein L 49.0 50 0.0017 23.8 6.2 33 107-140 85-117 (132)
17 1we3_O CPN10(groes); chaperoni 48.7 18 0.0006 24.9 3.5 38 56-97 12-49 (100)
18 3u5e_V L17A, YL32, 60S ribosom 41.8 71 0.0024 23.2 6.0 34 106-140 89-122 (137)
19 1p3h_A 10 kDa chaperonin; beta 41.1 33 0.0011 23.5 3.9 39 55-97 8-46 (99)
20 3i4o_A Translation initiation 32.4 19 0.00065 23.7 1.5 12 70-81 53-64 (79)
21 2dgy_A MGC11102 protein; EIF-1 31.5 34 0.0012 23.8 2.8 12 70-81 53-64 (111)
22 1jt8_A EIF-1A, probable transl 30.7 23 0.00077 24.4 1.7 10 71-80 59-68 (102)
23 3j21_J 50S ribosomal protein L 29.3 74 0.0025 23.2 4.4 34 106-140 93-126 (141)
24 3mt1_A Putative carboxynorsper 28.6 46 0.0016 27.3 3.6 25 56-83 298-322 (365)
25 4dt4_A FKBP-type 16 kDa peptid 25.3 1.2E+02 0.004 22.4 5.1 35 70-106 112-146 (169)
26 3n29_A Carboxynorspermidine de 24.5 58 0.002 27.5 3.5 25 56-83 352-376 (418)
27 2kr7_A FKBP-type peptidyl-prol 23.3 1.1E+02 0.0038 21.8 4.5 35 70-106 93-127 (151)
28 1d7q_A Translation initiation 23.3 57 0.0019 23.8 2.8 21 56-79 73-93 (143)
29 2equ_A PHD finger protein 20-l 21.9 1.6E+02 0.0055 18.7 6.3 47 69-118 8-57 (74)
30 3cx5_E Cytochrome B-C1 complex 20.9 2.6E+02 0.0088 20.7 6.3 30 57-93 62-91 (185)
31 3vab_A Diaminopimelate decarbo 20.7 78 0.0027 26.8 3.6 25 56-83 371-395 (443)
32 2i0n_A Class VII unconventiona 20.5 1.2E+02 0.0042 18.8 3.8 42 70-123 28-69 (80)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=1.6e-34 Score=235.90 Aligned_cols=123 Identities=31% Similarity=0.470 Sum_probs=107.5
Q ss_pred HHheeeEEEEEcCCCccccccCCCcCCCCCCCCcEEEEEceecc------------CCCCccccEEEEecCCCCCcceEE
Q 030852 24 ISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQ------------KYKFSHGDVIVFCSPSNHKEKHVK 91 (170)
Q Consensus 24 i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~------------~~~~~~GDiV~f~~p~~~~~~~vK 91 (170)
++.|+++++.|+|+||+|||+. ||+|+++|+.+. ..++++||||+|+.|.+++..+||
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~----------GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iK 70 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIK 70 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCT----------TEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEE
T ss_pred CeEEEEEEEEeccccccccccC----------CCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEE
Confidence 4578999999999999999999 999999998653 258999999999999877889999
Q ss_pred EEEeeCCCeEEecCC-------C---------------------------------------------------------
Q 030852 92 RIIGLPGDWIGTPMT-------N--------------------------------------------------------- 107 (170)
Q Consensus 92 RVia~~Gd~v~i~~~-------~--------------------------------------------------------- 107 (170)
||+|+|||+|.+.++ .
T Consensus 71 RViglpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~ 150 (248)
T 1b12_A 71 RAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSE 150 (248)
T ss_dssp EEEECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEE
T ss_pred EEEeeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhh
Confidence 999999999987543 0
Q ss_pred ---------------------------------CeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCC
Q 030852 108 ---------------------------------DVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQR 154 (170)
Q Consensus 108 ---------------------------------~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~ 154 (170)
..++||+|+|||+|||+++|.|||+||+||.++|+|||.+++||+++
T Consensus 151 ~~e~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~ 230 (248)
T 1b12_A 151 RKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK 230 (248)
T ss_dssp EEEEETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred HHhhhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCc
Confidence 02489999999999999999999999999999999999999999987
Q ss_pred cc
Q 030852 155 VR 156 (170)
Q Consensus 155 ~~ 156 (170)
..
T Consensus 231 ~~ 232 (248)
T 1b12_A 231 QE 232 (248)
T ss_dssp --
T ss_pred cc
Confidence 64
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.37 E-value=5.4e-12 Score=90.52 Aligned_cols=90 Identities=22% Similarity=0.273 Sum_probs=71.1
Q ss_pred EEEEEcCCCcc------ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEe
Q 030852 30 SIVPVRGSSMS------PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 103 (170)
Q Consensus 30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i 103 (170)
....|.|+||+ |+|++ ||++++++.. .++.||+|++..+. ++..+||+...+
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~Vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~------ 71 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFKKLIRDS------ 71 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCCT----------TCEEEEETTS----CCCTTCEEEEECST--TCEEEEEEEEET------
T ss_pred EEEEEeCcCcCCCCCCCCeeCC----------CCEEEEecCC----cCCCCCEEEEEECC--CeEEEEEEEEeC------
Confidence 46889999999 99999 9999999864 78999999999843 478999998743
Q ss_pred cCCCCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCCcc
Q 030852 104 PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVR 156 (170)
Q Consensus 104 ~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~~~ 156 (170)
|++++.+||+.. ..... -..-.|+|+|+..+||+..|+
T Consensus 72 -----------~~~~L~s~N~~y--~~~~~--~~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 72 -----------GQVFLQPLNPQY--PMIPC--NESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp -----------TEEEEECSSTTS--CCEEC--CTTCEEEEEEEEEECCGGGGC
T ss_pred -----------CEEEEEECCCCC--CCEEc--CCCcEEEEEEEEEEeCHHHcC
Confidence 478899999732 11111 135679999999999976653
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.19 E-value=1.4e-10 Score=83.58 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=64.2
Q ss_pred eEEEEEcCCCccc-cccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCC
Q 030852 29 ASIVPVRGSSMSP-TFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 107 (170)
Q Consensus 29 ~~~~~v~~~SM~P-tl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~ 107 (170)
.....|.|+||+| +++. ||++++++.. .++.||+|++.. +++..+||+...
T Consensus 27 ~~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~gdivv~~~---~~~~~vKr~~~~----------- 78 (116)
T 1umu_A 27 TYFVKASGDSMIDGGISD----------GDLLIVDSAI----TASHGDIVIAAV---DGEFTVKKLQLR----------- 78 (116)
T ss_dssp EEEEECCSSTTGGGTCCT----------TCEEEEETTS----CCCTTCEEEEEE---TTEEEEEEEECS-----------
T ss_pred EEEEEECCCCcCCCCCCC----------CCEEEEEcCC----CCCCCCEEEEEE---CCEEEEEEEEeC-----------
Confidence 4578999999999 8999 9999999865 689999999998 357899999874
Q ss_pred CeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCC
Q 030852 108 DVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPP 152 (170)
Q Consensus 108 ~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~ 152 (170)
+ .+++.+||+. +.......-..-.|+|+|++.+..+
T Consensus 79 ------~-~~~L~s~N~~--y~~~~i~~~~~~~IiG~Vv~~~r~~ 114 (116)
T 1umu_A 79 ------P-TVQLIPMNSA--YSPITISSEDTLDVFGVVIHVVKAA 114 (116)
T ss_dssp ------S-SCEEECSSTT--SCCEECCTTSCEEEEEEEEEEEC--
T ss_pred ------C-cEEEECCCCC--CCCEEcCCCCeEEEEEEEEEEEEec
Confidence 2 5778888862 1111111112346999999887654
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.99 E-value=2.6e-09 Score=83.31 Aligned_cols=87 Identities=21% Similarity=0.173 Sum_probs=64.4
Q ss_pred eEEEEEcCCCcccc-ccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCC
Q 030852 29 ASIVPVRGSSMSPT-FNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 107 (170)
Q Consensus 29 ~~~~~v~~~SM~Pt-l~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~ 107 (170)
.....|.|+||+|+ +.+ ||++++++.. .++.||+|++.. +++..+||+. .+|
T Consensus 110 ~~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~G~i~v~~~---~~~~~vKrl~-~~~--------- 162 (202)
T 1jhf_A 110 DFLLRVSGMSMKDIGIMD----------GDLLAVHKTQ----DVRNGQVVVARI---DDEVTVKRLK-KQG--------- 162 (202)
T ss_dssp CEEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTSEEEEEE---TTEEEEEEEE-EET---------
T ss_pred EEEEEECCCCCCCCCCCC----------CCEEEEeccC----CcCCCeEEEEEE---CCEEEEEEEE-EeC---------
Confidence 34688999999999 999 9999998754 789999999997 4688999998 455
Q ss_pred CeEEecCCeEEEeeCCCCCCCCCCcccc-ccCCCEEEEEEEEEeC
Q 030852 108 DVMKVPNGHCWVEGDNPSSSLDSRSFGP-IPLGLIKGWVTHILWP 151 (170)
Q Consensus 108 ~~~~vp~~~~~v~Gdn~~~s~DSR~~G~-V~~~~IiGkv~~~~~p 151 (170)
|.+++.+||+.. ....... -..-.|+|+|+..+..
T Consensus 163 -------~~~~l~s~N~~y--~~~~~~~~~~~~~IiG~Vv~~~r~ 198 (202)
T 1jhf_A 163 -------NKVELLPENSEF--KPIVVDLRQQSFTIEGLAVGVIRN 198 (202)
T ss_dssp -------TEEEEECSSTTC--CCEEEETTTSCEEEEEEEEEEEEC
T ss_pred -------CEEEEEECCCCC--CCEEccCCCCceEEEEEEEEEEEc
Confidence 477888888621 1111110 0123599999988764
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.93 E-value=6.8e-09 Score=76.45 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=63.0
Q ss_pred EEEEEcCCCcc------ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEe
Q 030852 30 SIVPVRGSSMS------PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 103 (170)
Q Consensus 30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i 103 (170)
....|.|+||+ |+|++ ||++++++.. .++.||+|++.... ++..+||+...+
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~------ 102 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFAKLIRDS------ 102 (133)
T ss_dssp EEEECCSSTTCCC---CCCCCT----------TCEEEEETTS----CCCTTSEEEEEETT--TEEEEEEEEEET------
T ss_pred EEEEEeCCCcCCCcCCCCccCC----------CCEEEEccCC----CCCCCCEEEEEECC--CEEEEEEEEEeC------
Confidence 46889999999 99999 9999999854 78999999998842 478999998642
Q ss_pred cCCCCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEE
Q 030852 104 PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHI 148 (170)
Q Consensus 104 ~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~ 148 (170)
|.+++.++|+.. ...... ..-.|+|+|+..
T Consensus 103 -----------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 103 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp -----------TEEEEECSSTTS--CCEECS--TTEEEEEEEEEE
T ss_pred -----------CeEEEEECCCCC--CCEEcC--CCCEEEEEEEEE
Confidence 478889998732 111111 345799999864
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.90 E-value=4.6e-09 Score=83.21 Aligned_cols=90 Identities=22% Similarity=0.277 Sum_probs=68.4
Q ss_pred EEEEEcCCCcc------ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEe
Q 030852 30 SIVPVRGSSMS------PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 103 (170)
Q Consensus 30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i 103 (170)
....|.|+||+ |++.+ ||+|++++.. .++.||+|++... .+...+||+...+
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~~----------Gd~v~vd~~~----~~~~g~ivv~~~~--~~~~~vKrl~~~~------ 198 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLG--GDEFTFKKLIRGS------ 198 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCCS----------SCEEEECCSS----CCCTTSEEEEEST--TTCCCCEEEECCS------
T ss_pred EEEEEeCCCcCCCCCCCCcCCC----------CCEEEECCCC----CCCCCcEEEEEEC--CCeEEEEEEEEcC------
Confidence 45789999999 99999 9999998754 7899999999872 3578999998643
Q ss_pred cCCCCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCCcc
Q 030852 104 PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVR 156 (170)
Q Consensus 104 ~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~~~ 156 (170)
|.+++.+||+.. .....- ..-.|+|+|+..+||...|+
T Consensus 199 -----------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 199 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp -----------SSCEEECSSTTS--CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred -----------CcEEEEeCCCCC--CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 467788888632 111111 34579999999999877663
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.68 E-value=1.7e-07 Score=72.95 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=64.4
Q ss_pred eEEEEEcCCCc-cccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCC
Q 030852 29 ASIVPVRGSSM-SPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 107 (170)
Q Consensus 29 ~~~~~v~~~SM-~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~ 107 (170)
.....|.|+|| +|++.+ ||++++++.. .++.||+|++.. +++..+||+.-.+
T Consensus 109 ~f~l~v~GdSM~~p~i~~----------GD~viv~~~~----~~~~G~ivv~~~---~~~~~vKr~~~~~---------- 161 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHICD----------GDLVLVRRQD----WAQNGDIVAAMV---DGEVTLAKFYQRG---------- 161 (196)
T ss_dssp EEEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTCEEEEEE---TTEEEEEEEEEET----------
T ss_pred EEEEEEeCCCcCCCCCCC----------CCEEEEeccC----cCCCCCEEEEEE---CCcEEEEEEEEEC----------
Confidence 45689999999 699999 9999999864 789999999988 3589999997642
Q ss_pred CeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEe
Q 030852 108 DVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILW 150 (170)
Q Consensus 108 ~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~ 150 (170)
|.+++..+|+.. .....- -..-.|+|+|+..+.
T Consensus 162 -------~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~r 194 (196)
T 3k2z_A 162 -------DTVELRPANREM--SSMFFR-AEKVKILGKVVGVFR 194 (196)
T ss_dssp -------TEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEEE
T ss_pred -------CEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEEE
Confidence 478888888632 111111 123579999998764
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=96.73 E-value=0.0092 Score=45.01 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=46.0
Q ss_pred CcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeEEecCCeEEEeeCCCCCCCCCCcccc
Q 030852 56 DDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGP 135 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~ 135 (170)
||+|+|++- ....|+++++.. +++..+||+.-.+|+ .+.+.++|++ ...-
T Consensus 122 Gd~v~Vd~~-----~~~~g~i~vv~~---~g~~~vKrl~~~~~~----------------~i~L~s~N~~-----~~i~- 171 (189)
T 2fjr_A 122 GKIYFVDKQ-----ASLSDGLWLVDI---KGAISIRELTKLPGR----------------KLHVAGGKVP-----FECG- 171 (189)
T ss_dssp TEEEEEETT-----CCSCSEEEEEEE---TTEEEEEEEEEETTT----------------EEEEESSSSC-----EEEE-
T ss_pred CcEEEEEcC-----CccCCCEEEEEe---CCeEEEEEEEECCCC----------------EEEEEeCCCC-----eEec-
Confidence 999999964 256699999987 468899999887664 5666677651 1110
Q ss_pred ccCCCEEEEEEEEEeC
Q 030852 136 IPLGLIKGWVTHILWP 151 (170)
Q Consensus 136 V~~~~IiGkv~~~~~p 151 (170)
...=.|+|+|++.+-.
T Consensus 172 ~~~i~IiG~Vv~~~r~ 187 (189)
T 2fjr_A 172 IDDIKTLGRVVGVYSE 187 (189)
T ss_dssp TTSSEEEEEEEEEEEE
T ss_pred ccceEEEEEEEEEEEe
Confidence 1234699999987643
No 9
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=71.76 E-value=24 Score=25.12 Aligned_cols=31 Identities=13% Similarity=0.341 Sum_probs=23.9
Q ss_pred CeEEecCCeEEEeeCCCCCCCCCCccccccCC
Q 030852 108 DVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLG 139 (170)
Q Consensus 108 ~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~ 139 (170)
..+..-+|.+.++.++. +..-+|-||||+.|
T Consensus 75 ~~i~FddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 75 SAIRFDDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp CEEEESSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred cEEEcCCcEEEEECCCC-CEeeeEEEccchHH
Confidence 44556677888887764 78899999999876
No 10
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=68.65 E-value=25 Score=25.04 Aligned_cols=34 Identities=24% Similarity=0.560 Sum_probs=25.3
Q ss_pred CCeEEecCCeEEEeeCCCCCCCCCCccccccCCC
Q 030852 107 NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 107 ~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~ 140 (170)
...+..-+|.+.++.++..+..-+|-||||+.|.
T Consensus 74 G~~i~FddNa~Vlin~~~g~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 74 GSVIRFDGNACVLLNNNSEQPIGTRIFGPVTREL 107 (122)
T ss_dssp SCEEEESSCEEEEEETTTEEESCSCBCSCCCGGG
T ss_pred CcEEEcCCceEEEEeCCCCCEeeeEEEccccHHH
Confidence 3445666778888887734678899999999874
No 11
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=67.04 E-value=31 Score=24.51 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=23.0
Q ss_pred eEEecCCeEEEeeCCCCCCCCCCccccccCCC
Q 030852 109 VMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 109 ~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~ 140 (170)
.+...+|.+.++.++. +..-+|-||||++|.
T Consensus 76 ~i~FddNa~Vlin~~g-~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 76 IIRYDDNAAVIIDQEG-NPKGTRIFGAIAREL 106 (121)
T ss_dssp EECCSSCEEEECCTTS-SCSSSCCCSCCCGGG
T ss_pred EEEeCCceEEEECCCC-CEeEeEEEcCcCHHH
Confidence 3444567777777664 778899999999874
No 12
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=63.82 E-value=37 Score=24.17 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=23.2
Q ss_pred eEEecCCeEEEeeCCCCCCCCCCccccccCCC
Q 030852 109 VMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 109 ~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~ 140 (170)
.+..-+|.+.++.++. +..-+|-||||++|.
T Consensus 76 ~i~FddNa~Vlin~~g-~p~GTrI~GPVarEl 106 (122)
T 1whi_A 76 YIRFDENACVIIRDDK-SPRGTRIFGPVAREL 106 (122)
T ss_dssp EECCSSCEEEEECTTS-CBSSSCBCSCBCTHH
T ss_pred EEEeCCceEEEECCCC-CEeeeEEEccchHHH
Confidence 4455567788887764 778899999999763
No 13
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=59.52 E-value=19 Score=24.58 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=9.5
Q ss_pred CCcEEEEEceec
Q 030852 55 SDDYVLVEKFCL 66 (170)
Q Consensus 55 ~gd~vlv~k~~~ 66 (170)
.||+|++.+...
T Consensus 6 L~DRVlVk~~e~ 17 (97)
T 1pcq_O 6 LHDRVIVKRKEV 17 (97)
T ss_dssp CSSEEEEEECCT
T ss_pred cCCEEEEEEccc
Confidence 489999988753
No 14
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=58.17 E-value=11 Score=28.09 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=42.7
Q ss_pred CcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCC---CeEEec--------CC--CCeEEecCCeEEEeeC
Q 030852 56 DDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPG---DWIGTP--------MT--NDVMKVPNGHCWVEGD 122 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~G---d~v~i~--------~~--~~~~~vp~~~~~v~Gd 122 (170)
++......+......++.||.|.+..+..+....|.||..+-. ....+. +. ......-++++|...
T Consensus 12 ~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~~~EvF~S~- 90 (174)
T 1w4s_A 12 LHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKSD- 90 (174)
T ss_dssp --------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEETTEEEEEE-
T ss_pred CCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCCCCeeEEeC-
Confidence 4555555554445689999999998876556678888886522 112221 00 011111256666643
Q ss_pred CCCCCCCCCccccccCCCEEEEEEEEE
Q 030852 123 NPSSSLDSRSFGPIPLGLIKGWVTHIL 149 (170)
Q Consensus 123 n~~~s~DSR~~G~V~~~~IiGkv~~~~ 149 (170)
++--++.+.|+||+.-..
T Consensus 91 ---------~~d~~~~~~I~gkC~V~~ 108 (174)
T 1w4s_A 91 ---------YYNKVPVSKILGKCVVMF 108 (174)
T ss_dssp ---------EEEEEEGGGEEEEEEEEE
T ss_pred ---------CcceecHHHeeeeEEEEE
Confidence 334588999999987554
No 15
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=55.50 E-value=13 Score=25.32 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=13.8
Q ss_pred CCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeC
Q 030852 54 LSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLP 97 (170)
Q Consensus 54 ~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~ 97 (170)
|.||+|++.+.... .-..|-|++=..- ..+..-..|+|+.
T Consensus 5 PL~DRVlVk~~e~e--~kT~gGI~LP~~a--~eK~~~G~VvAVG 44 (95)
T 3nx6_A 5 PLHDRVVVKPIEAD--EVSAGGIVIPDSA--KEKSTKGEVVAIG 44 (95)
T ss_dssp CCTTEEEEEEC-----------------------CEEEEEEEEC
T ss_pred EcCCEEEEEEcccc--ccccceEEeCccc--cCCccccEEEEEC
Confidence 34999999987632 3344555553321 2233444555543
No 16
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=48.99 E-value=50 Score=23.79 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.1
Q ss_pred CCeEEecCCeEEEeeCCCCCCCCCCccccccCCC
Q 030852 107 NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 107 ~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~ 140 (170)
...+...+|.+.++.++. +..-+|-||||+.|.
T Consensus 85 G~~i~FddNA~Vlin~~g-~p~GTrI~GPVarEl 117 (132)
T 1vq8_K 85 GTRVKFEDNAAVIVDENE-DPRGTELKGPIAREV 117 (132)
T ss_dssp SCEEEESSCEEEEECTTS-CBSSSCBCSEECHHH
T ss_pred CcEEEeCCceEEEECCCC-CEeEEEEEcCcCHHH
Confidence 445666677888887764 778899999998764
No 17
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=48.72 E-value=18 Score=24.93 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=21.8
Q ss_pred CcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeC
Q 030852 56 DDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLP 97 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~ 97 (170)
||+|++.+.... +-..|-|++=.. ...+.....|+|+.
T Consensus 12 ~DRVlVk~~e~e--~kT~gGI~LP~s--akeKp~~G~VvAVG 49 (100)
T 1we3_O 12 GDRVVVKRIEEE--PKTKGGIVLPDT--AKEKPQKGKVIAVG 49 (100)
T ss_dssp TTCEEEEECCCC--SSCTTCCCCCTT--TSCCCSEEEESCCC
T ss_pred CCEEEEEEcccc--ccccceEEeCcc--cccCCcCCEEEEEC
Confidence 999999987632 334455555322 13444555566554
No 18
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=41.77 E-value=71 Score=23.16 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=25.9
Q ss_pred CCCeEEecCCeEEEeeCCCCCCCCCCccccccCCC
Q 030852 106 TNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 106 ~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~ 140 (170)
+...+..-+|.+.++.++. +..-+|-||||+.|.
T Consensus 89 dG~~i~FddNA~Vlin~~g-~p~GTrI~GPVarEl 122 (137)
T 3u5e_V 89 DGVFLYFEDNAGVIANPKG-EMKGSAITGPVGKEC 122 (137)
T ss_dssp TSCEEEESSCEEEEBCTTC-CBSSSCBCSCBCHHH
T ss_pred CCeEEEcCCceEEEECCCC-CEeeeEEEcchhHHH
Confidence 3455666778888887764 788899999998764
No 19
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=41.06 E-value=33 Score=23.46 Aligned_cols=39 Identities=8% Similarity=0.156 Sum_probs=20.2
Q ss_pred CCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeC
Q 030852 55 SDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLP 97 (170)
Q Consensus 55 ~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~ 97 (170)
.||+|++.+.... +-..|-|++=.. ...+.....|+|+.
T Consensus 8 L~DRVlVk~~e~e--~kT~gGI~LP~s--akeKp~~G~VvAVG 46 (99)
T 1p3h_A 8 LEDKILVQANEAE--TTTASGLVIPDT--AKEKPQEGTVVAVG 46 (99)
T ss_dssp CTTEEEEEECCCC--CBCTTSCBCCCS--SCCSEEEEEEEEEC
T ss_pred eCCEEEEEEcccc--ccccceEEeCcc--cccCCceEEEEEEC
Confidence 4899999987532 333444444222 12334444555543
No 20
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=32.40 E-value=19 Score=23.66 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=7.1
Q ss_pred CCccccEEEEec
Q 030852 70 KFSHGDVIVFCS 81 (170)
Q Consensus 70 ~~~~GDiV~f~~ 81 (170)
.+..||.|.++.
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 455666666654
No 21
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.55 E-value=34 Score=23.85 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=7.1
Q ss_pred CCccccEEEEec
Q 030852 70 KFSHGDVIVFCS 81 (170)
Q Consensus 70 ~~~~GDiV~f~~ 81 (170)
-+.+||+|++..
T Consensus 53 wI~~GD~VlVe~ 64 (111)
T 2dgy_A 53 WIKRGDFLIVDP 64 (111)
T ss_dssp CCCSSCEEEEEE
T ss_pred EEcCCCEEEEEe
Confidence 355666666653
No 22
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=30.65 E-value=23 Score=24.43 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=5.2
Q ss_pred CccccEEEEe
Q 030852 71 FSHGDVIVFC 80 (170)
Q Consensus 71 ~~~GDiV~f~ 80 (170)
+.+||+|++.
T Consensus 59 I~~GD~VlVe 68 (102)
T 1jt8_A 59 VREGDVVIVK 68 (102)
T ss_dssp CCSCEEEEEC
T ss_pred ecCCCEEEEE
Confidence 4455555554
No 23
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.31 E-value=74 Score=23.17 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=25.2
Q ss_pred CCCeEEecCCeEEEeeCCCCCCCCCCccccccCCC
Q 030852 106 TNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 106 ~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~ 140 (170)
+...+...+|.+.++.++. +..-+|-||||+.|.
T Consensus 93 dGs~i~FddNA~VLin~~g-~p~GTRI~GPVarEl 126 (141)
T 3j21_J 93 DGMRVKFEDNAAVIVTPEG-VPRGTEIRGPVAREA 126 (141)
T ss_dssp TSCEECCSSCEEEEBCTTS-CBCSSCCCSEECHHH
T ss_pred CCcEEEcCCcEEEEECCCC-CEeeeEEEccccHHH
Confidence 3445566677788887764 788899999998764
No 24
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=28.57 E-value=46 Score=27.34 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=17.9
Q ss_pred CcEEEEEceeccCCCCccccEEEEecCC
Q 030852 56 DDYVLVEKFCLQKYKFSHGDVIVFCSPS 83 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~~GDiV~f~~p~ 83 (170)
+|++.-+... .+++.||+++|..-.
T Consensus 298 ~D~l~~~~~~---~~l~~GD~l~~~~~G 322 (365)
T 3mt1_A 298 GDVFGEFRFA---EELKVGDRISFQDAA 322 (365)
T ss_dssp SCEEEEEEES---SCCCTTCEEEESSCC
T ss_pred cCEEcccccC---CCCCCCCEEEEeccc
Confidence 7887644433 378999999998743
No 25
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=25.33 E-value=1.2e+02 Score=22.42 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=28.5
Q ss_pred CCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCC
Q 030852 70 KFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMT 106 (170)
Q Consensus 70 ~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~ 106 (170)
.++.|.++.+..|. +..+.-+|..+.+|+|.++.+
T Consensus 112 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~V~vD~N 146 (169)
T 4dt4_A 112 EPEIGAIMLFTAMD--GSEMPGVIREINGDSITVDFN 146 (169)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEETTEEEEECS
T ss_pred CCCCCcEEEEECCC--CCEEEEEEEEEcCCEEEEeCC
Confidence 58889999998863 556777899999999998754
No 26
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=24.48 E-value=58 Score=27.45 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=17.6
Q ss_pred CcEEEEEceeccCCCCccccEEEEecCC
Q 030852 56 DDYVLVEKFCLQKYKFSHGDVIVFCSPS 83 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~~GDiV~f~~p~ 83 (170)
||++.-..+. .+++.||+++|..-.
T Consensus 352 ~D~l~~~~~~---~~l~~GD~l~~~~~G 376 (418)
T 3n29_A 352 GDVMGEYAFD---KKLKIGDKIVFLDQI 376 (418)
T ss_dssp TCEEEEEEES---SCCCTTCEEEESSCS
T ss_pred CCEEeecccC---CCCCCCCEEEEeCcc
Confidence 7887644333 368999999998743
No 27
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=23.34 E-value=1.1e+02 Score=21.83 Aligned_cols=35 Identities=6% Similarity=0.032 Sum_probs=28.7
Q ss_pred CCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCC
Q 030852 70 KFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMT 106 (170)
Q Consensus 70 ~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~ 106 (170)
.++.|+.+.+..|. +..+.-+|..+.+++|.++.+
T Consensus 93 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~v~vD~N 127 (151)
T 2kr7_A 93 ELEKGMSVFGQTED--NQTIQAIIKDFSATHVMVDYN 127 (151)
T ss_dssp CCCTTCEEEEEETT--TEEEEEEEEEECSSEEEEEEC
T ss_pred CCccCCEEEEECCC--CCEEEEEEEEECCCEEEEECC
Confidence 68889999998874 455778899999999998643
No 28
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.32 E-value=57 Score=23.82 Aligned_cols=21 Identities=29% Similarity=0.244 Sum_probs=9.4
Q ss_pred CcEEEEEceeccCCCCccccEEEE
Q 030852 56 DDYVLVEKFCLQKYKFSHGDVIVF 79 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~~GDiV~f 79 (170)
||+|+|....+ +..+|+|+.-
T Consensus 73 GD~VlVe~~~y---d~~KG~Ii~r 93 (143)
T 1d7q_A 73 SDIILVGLRDY---QDNKADVILK 93 (143)
T ss_dssp TCEEEEECSSS---SSSCCEEEEE
T ss_pred CCEEEEeeccC---CCCeEEEEEE
Confidence 55555554332 2344554443
No 29
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.95 E-value=1.6e+02 Score=18.70 Aligned_cols=47 Identities=9% Similarity=-0.029 Sum_probs=32.3
Q ss_pred CCCccccEEEEecCCCCCcceEEEEEeeCC-CeEE--ecCCCCeEEecCCeEE
Q 030852 69 YKFSHGDVIVFCSPSNHKEKHVKRIIGLPG-DWIG--TPMTNDVMKVPNGHCW 118 (170)
Q Consensus 69 ~~~~~GDiV~f~~p~~~~~~~vKRVia~~G-d~v~--i~~~~~~~~vp~~~~~ 118 (170)
..++.||.+..+.. ++.++=-+|.++.+ ++.. +.+. ..-+++..++-
T Consensus 8 ~~~kvGd~clA~ws--Dg~~Y~A~I~~v~~~~~~~V~f~Dy-n~e~v~~~~lr 57 (74)
T 2equ_A 8 FDFKAGEEVLARWT--DCRYYPAKIEAINKEGTFTVQFYDG-VIRCLKRMHIK 57 (74)
T ss_dssp CCCCTTCEEEEECS--SSSEEEEEEEEESTTSSEEEEETTS-CEEEECGGGEE
T ss_pred CCCCCCCEEEEECC--CCCEEEEEEEEECCCCEEEEEEecC-CeEEecHHHCe
Confidence 37899999999986 67888889999876 3333 3333 55555555543
No 30
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=20.89 E-value=2.6e+02 Score=20.67 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=18.1
Q ss_pred cEEEEEceeccCCCCccccEEEEecCCCCCcceEEEE
Q 030852 57 DYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRI 93 (170)
Q Consensus 57 d~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRV 93 (170)
..+-++ .. ++..|+.+.++... ...++.|.
T Consensus 62 ~~v~V~-~s----~l~~G~~~~v~~~g--~pv~v~r~ 91 (185)
T 3cx5_E 62 AKVEVN-LA----AIPLGKNVVVKWQG--KPVFIRHR 91 (185)
T ss_dssp CCEEEE-GG----GCCTTCEEEEEETT--EEEEEEEC
T ss_pred CcEEEE-HH----HCCCCCeEEEEECC--eEEEEEEC
Confidence 445553 33 77889999998742 23444443
No 31
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=20.67 E-value=78 Score=26.75 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=16.6
Q ss_pred CcEEEEEceeccCCCCccccEEEEecCC
Q 030852 56 DDYVLVEKFCLQKYKFSHGDVIVFCSPS 83 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~~GDiV~f~~p~ 83 (170)
+|++.-+..- .+++.||+++|..-.
T Consensus 371 ~D~l~~~~~l---p~l~~GD~l~~~~~G 395 (443)
T 3vab_A 371 GDYLGLDREV---AKPAPGDLIAICTTG 395 (443)
T ss_dssp TCEEEEEEEE---ECCCTTCEEEEESCT
T ss_pred CCEEeeccCc---CCCCCCCEEEEeCCC
Confidence 6777655432 267888888887743
No 32
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=20.46 E-value=1.2e+02 Score=18.81 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeEEecCCeEEEeeCC
Q 030852 70 KFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDN 123 (170)
Q Consensus 70 ~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~~vp~~~~~v~Gdn 123 (170)
.+++||+|.+-...+.+.+...+.- | ..-.+|.+++-.+.+.
T Consensus 28 sf~~Gd~i~v~~~~~~~gWw~g~~~---g---------~~G~fP~~yv~~~~~~ 69 (80)
T 2i0n_A 28 PFKRNDIITITFKDQENKWFMGQLN---G---------KEGSFPVDHVEILLSD 69 (80)
T ss_dssp CBCSSEEEEEEEESSSSSEEEEEET---T---------EEEEEEGGGEEEESSC
T ss_pred CCCCCCEEEEEEecCCCCEEEEEEC---C---------cEEEechHHEEECCCC
Confidence 5688998887764433325544422 2 2335666666665443
Done!