BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030853
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZAW|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group
P212121, Form A
Length = 180
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 62 CHLIAAIKYKGFTVKQFQDLRRSLPEN----TKLIVAKNTLVYKAIEGTQWEALKPCMSG 117
LI + GFTV +LR L E + V KNTL+ A++ ++E + + G
Sbjct: 22 TSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG 81
Query: 118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
A L+V + A+K NF K+KK + + G EG
Sbjct: 82 PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEG 121
>pdb|1ZAV|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P21
pdb|1ZAX|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group
P212121, Form B
Length = 180
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 62 CHLIAAIKYKGFTVKQFQDLRRSLPEN----TKLIVAKNTLVYKAIEGTQWEALKPCMSG 117
LI + GFTV +LR L E + V KNTL+ A++ ++E + + G
Sbjct: 22 TSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG 81
Query: 118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
A L+V + A+K NF K+KK + + G EG
Sbjct: 82 PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEG 121
>pdb|3J0T|J Chain J, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|J Chain J, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|J Chain J, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|J Chain J, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|J Chain J, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|J Chain J, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
Length = 164
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 71 KGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
+G TV + +LR++ E + V +NTL+ +A+EGT +E LK G L ++ E
Sbjct: 30 RGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT--LIAYSMEH 87
Query: 130 P-AAIKPYRNFQKEKKLEENDFAGAVFEG 157
P AA + ++ F K + + A FEG
Sbjct: 88 PGAAARLFKEFAKANA--KFEVKAAAFEG 114
>pdb|3SGF|H Chain H, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOS|H Chain H, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 165
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 71 KGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
+G TV + +LR++ E + V +NTL+ +A+EGT +E LK G L ++ E
Sbjct: 31 RGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVG--PTLIAYSMEH 88
Query: 130 P-AAIKPYRNFQKEKKLEENDFAGAVFEG 157
P AA + ++ F K + + A FEG
Sbjct: 89 PGAAARLFKEFAKANA--KFEVKAAAFEG 115
>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|G Chain G, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|I Chain I, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|I Chain I, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|I Chain I, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|I Chain I, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|I Chain I, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|I Chain I, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|I Chain I, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|I Chain I, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|I Chain I, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|I Chain I, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|I Chain I, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|I Chain I, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|I Chain I, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|G Chain G, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|G Chain G, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1S72|G Chain G, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1W2B|G Chain G, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|1YHQ|G Chain G, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|G Chain G, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|G Chain G, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|G Chain G, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|G Chain G, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|G Chain G, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|G Chain G, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|G Chain G, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|G Chain G, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|G Chain G, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|G Chain G, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|G Chain G, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|G Chain G, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|G Chain G, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|G Chain G, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|G Chain G, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|G Chain G, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|G Chain G, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|G Chain G, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|G Chain G, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|G Chain G, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|G Chain G, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CME|G Chain G, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|G Chain G, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3CXC|G Chain G, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
Length = 348
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 59 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGM 118
+E+ + + G +Q QD+RR L +L V++NTL+ +A++ + + +
Sbjct: 27 IESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDD-----VDDGLEDL 81
Query: 119 NAWLFVHTEEIPAAIKPYRNFQK 141
N ++ I P+ FQ+
Sbjct: 82 NGYITGQVGLIGTDDNPFSLFQE 104
>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|G Chain G, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|G Chain G, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|G Chain G, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|G Chain G, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3G4S|G Chain G, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|G Chain G, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|G Chain G, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3I55|G Chain G, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|G Chain G, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
Length = 348
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 59 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGM 118
+E+ + + G +Q QD+RR L +L V++NTL+ +A++ + + +
Sbjct: 27 IESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDD-----VDDGLEDL 81
Query: 119 NAWLFVHTEEIPAAIKPYRNFQK 141
N ++ I P+ FQ+
Sbjct: 82 NGYITGQVGLIGTDDNPFSLFQE 104
>pdb|3OW2|G Chain G, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 62
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 59 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIE 104
+E+ + + G +Q QD+RR L +L V++NTL+ +A++
Sbjct: 16 IESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALD 61
>pdb|3O5H|M Chain M, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit
Length = 312
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 58 HLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEG-----TQWEALK 112
+LE + + + +Q ++R+ L +++ KNT+V +AI G +E L
Sbjct: 18 YLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLL 77
Query: 113 PCMSGMNAWLFVH 125
P + G ++F +
Sbjct: 78 PFVKGYVGFVFTN 90
>pdb|3U5I|QQ Chain q, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|QQ Chain q, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 312
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 58 HLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEG-----TQWEALK 112
+LE + + + +Q ++R+ L +++ KNT+V +AI G +E L
Sbjct: 18 YLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLL 77
Query: 113 PCMSGMNAWLFVH 125
P + G ++F +
Sbjct: 78 PFVKGNVGFVFTN 90
>pdb|3JYW|8 Chain 8, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 118
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 58 HLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-----QWEALK 112
+LE + + + +Q ++R+ L +++ KNT+V +AI G +E L
Sbjct: 16 YLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLL 75
Query: 113 PCMSGMNAWLFVH 125
P + G ++F +
Sbjct: 76 PFVKGYVGFVFTN 88
>pdb|3IZS|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3J16|G Chain G, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 312
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 58 HLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEG-----TQWEALK 112
+LE + + + +Q ++R+ L +++ KNT+V +AI G +E L
Sbjct: 18 YLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLL 77
Query: 113 PCMSGMNAWLFVH 125
P + G ++F +
Sbjct: 78 PFVKGNVGFVFTN 90
>pdb|2ZKR|GG Chain g, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 76 KQFQDLRRSLPENTKLIVAKNTLVYKAIEG-----TQWEALKPCMSGMNAWLF 123
KQ Q +R SL +++ KNT++ KAI G E L P + G ++F
Sbjct: 38 KQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>pdb|3QED|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|C Chain C, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|D Chain D, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 314
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 82 RRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCM 115
R P+NT V LVY + + WEA P +
Sbjct: 37 RDEAPDNTTFFVXNEWLVYSSDDXANWEAHGPGL 70
>pdb|3QEE|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEE|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 82 RRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCM 115
R P+NT V LVY + + WEA P +
Sbjct: 30 RDEAPDNTTFFVMNEWLVYSSDDMANWEAHGPGL 63
>pdb|3QEF|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEF|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 82 RRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCM 115
R P+NT V LVY + + WEA P +
Sbjct: 30 RDEAPDNTTFFVMNEWLVYSSDDMANWEAHGPGL 63
>pdb|1Z6K|A Chain A, Citrate Lyase Beta Subunit Complexed With Oxaloacetate And
Magnesium From M. Tuberculosis
Length = 293
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 103 IEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYR 137
+EG Q EA G + + +H +IP K YR
Sbjct: 208 VEGLQEEARDAAAVGFDVTVCIHPSQIPVVRKAYR 242
>pdb|3T51|B Chain B, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T51|C Chain C, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|B Chain B, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T53|C Chain C, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|B Chain B, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|C Chain C, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 336
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 109 EALKPCMSGMNAWLFVHTEEIPAAIKPYRNF 139
EALKP GMNAWL ++T P + P +
Sbjct: 228 EALKP---GMNAWLQLNTASEPMLLIPSQAL 255
>pdb|3OW7|A Chain A, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli.
pdb|3OW7|B Chain B, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli.
pdb|3OOC|A Chain A, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|3OOC|B Chain B, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|3NE5|B Chain B, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
pdb|3NE5|C Chain C, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
pdb|3OPO|A Chain A, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|3OPO|B Chain B, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|4DNT|B Chain B, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
pdb|4DNT|C Chain C, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
pdb|4DOP|B Chain B, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
pdb|4DOP|C Chain C, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
pdb|4DNR|B Chain B, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
pdb|4DNR|C Chain C, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 413
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 109 EALKPCMSGMNAWLFVHTEEIPAAIKP 135
EALKP GMNAWL ++T P + P
Sbjct: 305 EALKP---GMNAWLQLNTASEPMLLIP 328
>pdb|3H94|A Chain A, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|3H94|B Chain B, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
Length = 407
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 109 EALKPCMSGMNAWLFVHTEEIPAAIKPYRNF 139
EALKP GMNAWL ++T P + P +
Sbjct: 305 EALKP---GMNAWLQLNTASEPMLLIPSQAL 332
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 79 QDLRRSLPENTKLIVAKNTL-VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYR 137
Q +RR LP + A++ L VY+ IE L+ N F+H +E+ + ++
Sbjct: 203 QSIRRGLPR----VEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWK 258
Query: 138 NFQKEKKLEENDFA-GAVFEGVGYWIGG 164
+ ++KL +A V EG +WI G
Sbjct: 259 DLDFQRKLP---YARDRVVEGY-FWISG 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,862,225
Number of Sequences: 62578
Number of extensions: 175261
Number of successful extensions: 337
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 27
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)