Query 030853
Match_columns 170
No_of_seqs 121 out of 1053
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zav_A 50S ribosomal protein L 100.0 8.4E-32 2.9E-36 214.0 12.0 124 42-165 2-129 (180)
2 3sgf_H 50S ribosomal protein L 100.0 1.3E-33 4.4E-38 222.0 -1.1 122 41-165 1-123 (165)
3 2j01_J 50S ribosomal protein L 100.0 8.2E-31 2.8E-35 207.1 13.9 120 43-165 1-122 (173)
4 3jsy_A Acidic ribosomal protei 99.9 5E-24 1.7E-28 173.5 8.7 110 45-155 2-125 (213)
5 1vq8_G Acidic ribosomal protei 99.9 2.2E-24 7.4E-29 186.8 3.7 122 38-164 6-129 (348)
6 3u5i_q A0, L10E, 60S acidic ri 99.9 5.5E-23 1.9E-27 175.7 11.4 99 41-140 1-104 (312)
7 3a1y_G Acidic ribosomal protei 99.9 7.9E-24 2.7E-28 178.7 3.2 114 42-160 2-123 (284)
8 3j21_k Acidic ribosomal protei 99.9 5.1E-23 1.7E-27 177.7 2.7 115 41-156 1-130 (339)
9 2zkr_g 60S acidic ribosomal pr 99.9 2.8E-23 9.7E-28 177.9 0.0 98 44-142 6-108 (317)
10 3iz5_s 60S acidic ribosomal pr 99.8 5.8E-22 2E-26 169.9 3.4 111 44-155 7-131 (319)
11 1jjg_A M156R; beta barrel, S1 55.1 3 0.0001 29.4 0.3 80 8-95 5-90 (102)
12 1jo0_A Hypothetical protein HI 35.6 26 0.00088 24.4 2.7 71 53-125 9-87 (98)
13 1sbo_A Putative anti-sigma fac 33.0 94 0.0032 20.1 5.3 63 51-113 31-102 (110)
14 3rht_A (gatase1)-like protein; 30.4 44 0.0015 26.9 3.7 39 57-95 46-86 (259)
15 4dxr_B Nesprin-1; beta-sandwic 22.2 34 0.0012 19.5 1.1 22 9-30 5-26 (35)
16 2kln_A Probable sulphate-trans 21.9 1.9E+02 0.0066 19.6 5.7 63 49-111 31-104 (130)
17 3goe_A DNA repair protein RAD6 20.0 1.2E+02 0.0041 20.5 3.7 40 131-170 31-70 (82)
18 2qko_A Possible transcriptiona 20.0 95 0.0033 22.3 3.6 60 39-105 21-82 (215)
No 1
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=99.97 E-value=8.4e-32 Score=214.02 Aligned_cols=124 Identities=28% Similarity=0.427 Sum_probs=115.6
Q ss_pred ccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC----cEEEEEchHHHHHHHhCCCcccccccCcC
Q 030853 42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN----TKLIVAKNTLVYKAIEGTQWEALKPCMSG 117 (170)
Q Consensus 42 ~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~----~~i~VvKNtL~r~AL~~t~~e~L~~~l~G 117 (170)
+|+|++|.++|++|++.|++|+.++++||+|++++|+++||++||+. ++++|+|||||++|++++++++|.++|+|
T Consensus 2 ~m~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G 81 (180)
T 1zav_A 2 MLTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG 81 (180)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSS
T ss_pred CCCHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCChhhHHHhCcC
Confidence 58899999999999999999999999999999999999999999864 99999999999999999999999999999
Q ss_pred cEEEEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeeccccc
Q 030853 118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGD 165 (170)
Q Consensus 118 ~~alvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~ 165 (170)
|++++|++++||.+++|++.+|+|++..+++.|+||++||++++.+++
T Consensus 82 ~~a~~fs~~~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v 129 (180)
T 1zav_A 82 PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEV 129 (180)
T ss_dssp SEEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHH
Confidence 999999973468899999999999982127999999999999999865
No 2
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=99.97 E-value=1.3e-33 Score=221.99 Aligned_cols=122 Identities=25% Similarity=0.328 Sum_probs=117.1
Q ss_pred hccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCCcccccccCcCcE
Q 030853 41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMN 119 (170)
Q Consensus 41 ~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~~e~L~~~l~G~~ 119 (170)
|+|+|++|.++|++|++.|++|+.++++||+|++++|+++||++||+. ++++|+||||+++|++++++++|.++|+||+
T Consensus 1 m~~~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~t 80 (165)
T 3sgf_H 1 MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT 80 (165)
T ss_dssp CCSHHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCTTTCTTCSTTCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCCcchhHHhCcCCE
Confidence 788999999999999999999999999999999999999999999986 9999999999999999999999999999999
Q ss_pred EEEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeeccccc
Q 030853 120 AWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGD 165 (170)
Q Consensus 120 alvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~ 165 (170)
+++|++ +||.+++|++.+|+|+++ ++.|+||++||++++.+++
T Consensus 81 ai~fs~-~dp~~~aK~l~~f~K~~~--~l~ikgg~~eg~~~~~~~v 123 (165)
T 3sgf_H 81 LIAYSM-EHPGAAARLFKEFAKANA--KFEVKAAAFEGELIPASQI 123 (165)
T ss_dssp CCCEEE-ECSSCSHHHHHHHHHHGG--GSSSCCTTCCCCTTTTCCC
T ss_pred EEEEeC-CCHHHHHHHHHHHHHhCC--CcEEEEEEEcCEEeCHHHH
Confidence 999998 568899999999999987 7999999999999998876
No 3
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=99.97 E-value=8.2e-31 Score=207.15 Aligned_cols=120 Identities=25% Similarity=0.332 Sum_probs=113.0
Q ss_pred cChHHHHHHHHHHHHHHhhCC-eEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCCcccccccCcCcEE
Q 030853 43 ISRTKKEETVDTVKTHLENCH-LIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNA 120 (170)
Q Consensus 43 ~~r~~K~~~v~el~e~~~~s~-~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~~e~L~~~l~G~~a 120 (170)
|+|++|.++|++|++.|++|+ .++++||+|++++|+++||++||+. ++++|+|||||++|+++++++. .++|+||++
T Consensus 1 m~~~~K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~-~~~l~G~~a 79 (173)
T 2j01_J 1 MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPE-LDGLQGPSA 79 (173)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEehhHHHHHHHhcCCCCc-cccccCCEE
Confidence 578999999999999999999 9999999999999999999999986 9999999999999999999999 999999999
Q ss_pred EEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeeccccc
Q 030853 121 WLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGD 165 (170)
Q Consensus 121 lvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~ 165 (170)
++|+ +||.+++|++.+|+|++..+++.|+||++||++++.+++
T Consensus 80 ~~fs--~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v 122 (173)
T 2j01_J 80 VVFY--EDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDV 122 (173)
T ss_pred EEEe--CCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHH
Confidence 9999 468899999999999983238999999999999999865
No 4
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=5e-24 Score=173.48 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCC-------CcccccccCcC
Q 030853 45 RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-------QWEALKPCMSG 117 (170)
Q Consensus 45 r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t-------~~e~L~~~l~G 117 (170)
+++|.++|++|++.+++|+.++++||+|++++|+++||++||+.++++|+|||||++|++++ +++.|.++|+|
T Consensus 2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G 81 (213)
T 3jsy_A 2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence 46799999999999999999999999999999999999999987999999999999999998 89999999999
Q ss_pred cEEEEEeeCCChHHHHHHHHHHh-----hhcC--CCcceeeEEEE
Q 030853 118 MNAWLFVHTEEIPAAIKPYRNFQ-----KEKK--LEENDFAGAVF 155 (170)
Q Consensus 118 ~~alvFs~~d~~~~~~K~i~~f~-----K~~~--~~~l~ikgG~~ 155 (170)
+++++||+ +||.+++|+|.+|. +.+. +..+.+..|..
T Consensus 82 ~~~l~Ft~-~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t 125 (213)
T 3jsy_A 82 GAAILVTD-MNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGST 125 (213)
T ss_dssp SEEEEEES-SCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEE
T ss_pred CeEEEEeC-CCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCC
Confidence 99999998 67999999999874 3332 23466777655
No 5
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=99.89 E-value=2.2e-24 Score=186.76 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=28.7
Q ss_pred hhhhccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCCC--cccccccC
Q 030853 38 HIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ--WEALKPCM 115 (170)
Q Consensus 38 ~~~~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t~--~e~L~~~l 115 (170)
+..|.+.+++|.++|++|++.|++|+.++++||+||+++|+++||++||+.++++|+|||||++||++++ ++.|.++|
T Consensus 6 ~~~~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~le~L~~~L 85 (348)
T 1vq8_G 6 ERKTETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLEDLNGYI 85 (348)
T ss_dssp ------CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC------------
T ss_pred hhcccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCcchHHHHHhc
Confidence 4557788999999999999999999999999999999999999999999779999999999999999998 89999999
Q ss_pred cCcEEEEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeecccc
Q 030853 116 SGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGG 164 (170)
Q Consensus 116 ~G~~alvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~ 164 (170)
+|+++++|++ +||.+++|++.+|.+. .+..+|++.++.++-+++
T Consensus 86 kG~tal~Ft~-~Dp~~vaK~l~~f~~~----~pAr~GaiAp~dV~IpaG 129 (348)
T 1vq8_G 86 TGQVGLIGTD-DNPFSLFQELEASKTP----APIGAGEVAPNDIVIPEG 129 (348)
T ss_dssp -------------------------------------------------
T ss_pred cCCEEEEEeC-CCHHHHHHHHHHhccc----chhhcCCcCCceEEeCCC
Confidence 9999999998 5688999999999754 345677777776665543
No 6
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=99.89 E-value=5.5e-23 Score=175.74 Aligned_cols=99 Identities=22% Similarity=0.366 Sum_probs=92.6
Q ss_pred hccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhC-----CCcccccccC
Q 030853 41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEG-----TQWEALKPCM 115 (170)
Q Consensus 41 ~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~-----t~~e~L~~~l 115 (170)
|.++|++|.++|++|++.|++|+.++|+||+||+++|+++||++||+.+.++|+|||||++|+++ .+++.|.++|
T Consensus 1 M~~~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L 80 (312)
T 3u5i_q 1 MGGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFV 80 (312)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGC
T ss_pred CCCcHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhc
Confidence 67889999999999999999999999999999999999999999998889999999999999999 4899999999
Q ss_pred cCcEEEEEeeCCChHHHHHHHHHHh
Q 030853 116 SGMNAWLFVHTEEIPAAIKPYRNFQ 140 (170)
Q Consensus 116 ~G~~alvFs~~d~~~~~~K~i~~f~ 140 (170)
+|+++++||+ +||.+++|+|.+|.
T Consensus 81 ~G~~gl~Ft~-~dp~~v~k~l~~~k 104 (312)
T 3u5i_q 81 KGNVGFVFTN-EPLTEIKNVIVSNR 104 (312)
T ss_dssp CSSEEEEEES-SCHHHHHHHHHTSS
T ss_pred cCCEEEEEEC-CCHHHHHHHHHhcc
Confidence 9999999998 67999999999874
No 7
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.88 E-value=7.9e-24 Score=178.69 Aligned_cols=114 Identities=20% Similarity=0.175 Sum_probs=93.0
Q ss_pred ccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCC-------cccccc
Q 030853 42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQ-------WEALKP 113 (170)
Q Consensus 42 ~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~-------~e~L~~ 113 (170)
...+++|.++|++|++.|++|+.++++||+||+++|+++||++||+. ++++|+|||||++||++++ +++|.+
T Consensus 2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~ 81 (284)
T 3a1y_G 2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE 81 (284)
T ss_dssp CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence 34678899999999999999999999999999999999999999977 9999999999999999875 999999
Q ss_pred cCcCcEEEEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeee
Q 030853 114 CMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGY 160 (170)
Q Consensus 114 ~l~G~~alvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~l 160 (170)
+|+|+++++||+ +||.+++|++.+|... .+..+|++.++.++
T Consensus 82 ~l~G~~al~Ft~-~dp~~vak~l~~f~~~----~~ar~Gaia~~dv~ 123 (284)
T 3a1y_G 82 YIDRGAGILVTN-MNPFKLYKFLQQNRQP----APAKPGAVVPKDVV 123 (284)
T ss_dssp CCCTTEEEEEES-SCHHHHHHHHHHCCCC------------------
T ss_pred hcCCCEEEEEEC-CCHHHHHHHHHHhcch----hhhhcCCccceeEE
Confidence 999999999998 6799999999998643 34456666655443
No 8
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.86 E-value=5.1e-23 Score=177.68 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=97.9
Q ss_pred hccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCC-------Cccccc
Q 030853 41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGT-------QWEALK 112 (170)
Q Consensus 41 ~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t-------~~e~L~ 112 (170)
|+..+++|.++|++|++.|++|+.++|+||+||+++|+++||++||+. ++++|+|||||++|++++ +++.|.
T Consensus 1 m~~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~ 80 (339)
T 3j21_k 1 MAHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLI 80 (339)
T ss_dssp -----CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSS
T ss_pred CCccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHH
Confidence 455688899999999999999999999999999999999999999987 899999999999999987 689999
Q ss_pred ccCcCcEEEEEeeCCChHHHHHHHHHHhh-----hcC--CCcceeeEEEEc
Q 030853 113 PCMSGMNAWLFVHTEEIPAAIKPYRNFQK-----EKK--LEENDFAGAVFE 156 (170)
Q Consensus 113 ~~l~G~~alvFs~~d~~~~~~K~i~~f~K-----~~~--~~~l~ikgG~~d 156 (170)
++|+|+++++||+ +||.+++|+|.+|.. .+. +..+.|..|...
T Consensus 81 ~~L~G~~~l~Ft~-~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~ 130 (339)
T 3j21_k 81 NYIEGGAGILVTT-MNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTS 130 (339)
T ss_dssp CCCCTTEEEEEES-SCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECS
T ss_pred HHhcCCeEEEEEC-CCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCC
Confidence 9999999999998 679999999998743 331 234677777553
No 9
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.85 E-value=2.8e-23 Score=177.87 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCC-----CcccccccCcCc
Q 030853 44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-----QWEALKPCMSGM 118 (170)
Q Consensus 44 ~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t-----~~e~L~~~l~G~ 118 (170)
.+++|.++|++|++.|++|+.++|+||+||+++|+++||++||+.++++|+|||||++||+++ +++.|.++|+|+
T Consensus 6 ~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L~G~ 85 (317)
T 2zkr_g 6 RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGN 85 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcccccchhhhhhccCCC
Confidence 578899999999999999999999999999999999999999987999999999999999999 899999999999
Q ss_pred EEEEEeeCCChHHHHHHHHHHhhh
Q 030853 119 NAWLFVHTEEIPAAIKPYRNFQKE 142 (170)
Q Consensus 119 ~alvFs~~d~~~~~~K~i~~f~K~ 142 (170)
++++||+ +||.+++|++.+|...
T Consensus 86 ~al~Ft~-~Dp~~vaK~l~~f~~~ 108 (317)
T 2zkr_g 86 VGFVFTK-EDLTEIRDMLLANKVP 108 (317)
T ss_dssp ------------------------
T ss_pred EEEEEEC-CCHHHHHHHHHHhCcc
Confidence 9999998 5688999999987643
No 10
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=99.84 E-value=5.8e-22 Score=169.86 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCC-------CcccccccCc
Q 030853 44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-------QWEALKPCMS 116 (170)
Q Consensus 44 ~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t-------~~e~L~~~l~ 116 (170)
.+++|.++|++|++.|++|+.++|+||+||+++|+++||++||++++++|+|||||++||+++ +++.|.++|+
T Consensus 7 ~~e~K~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~e~~~~~~le~L~~~L~ 86 (319)
T 3iz5_s 7 KAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLV 86 (319)
T ss_dssp SCCCSSHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHHHSCEECCSTTTCCHHHHHHHSSSCCSSSSSSSCCCC
T ss_pred hHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcEEEEEhHHHHHHHHhhchhhhccccHHHHHHHhc
Confidence 578899999999999999999999999999999999999999976899999999999999986 7999999999
Q ss_pred CcEEEEEeeCCChHHHHHHHHHHh-----hhcC--CCcceeeEEEE
Q 030853 117 GMNAWLFVHTEEIPAAIKPYRNFQ-----KEKK--LEENDFAGAVF 155 (170)
Q Consensus 117 G~~alvFs~~d~~~~~~K~i~~f~-----K~~~--~~~l~ikgG~~ 155 (170)
|+++++||+ +||.+++|+|.+|. +.+. +..+.|..|..
T Consensus 87 G~~gl~FT~-~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~VpaG~t 131 (319)
T 3iz5_s 87 GNVGLIFTK-GDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNT 131 (319)
T ss_dssp TTEEEEEES-SCHHHHHHHHHHSCEEECCCTTCBCSSCEEECCEEC
T ss_pred CCeEEEEEC-CChHHHHHHHHHccccccccCCCcCCceEEECCCCC
Confidence 999999998 57999999999864 3331 23466777764
No 11
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=55.05 E-value=3 Score=29.42 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=49.1
Q ss_pred ccccccccCCccCCCCCCCCCCCCCCCCCchhh---hccChHHHHHHHHHHHHHHhhC--CeEEEEEeCCCChhHHHHHH
Q 030853 8 LSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHIR---AAISRTKKEETVDTVKTHLENC--HLIAAIKYKGFTVKQFQDLR 82 (170)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~K~~~v~el~e~~~~s--~~v~v~~~~~lta~q~~~LR 82 (170)
-|++.|+|-+...-..-.++.|-|.-.+.++.. .-..-. +.-.+-+| --.+++||-++..+.+.+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~VtkGiVy~kd~~--------fyV~L~dY~glEaii~dYvnv~~dr~~klk 76 (102)
T 1jjg_A 5 KPSSRPRPRKNKNIKVNTYRTSAMDLSPGSVHEGIVYFKDGI--------FKVRLLGYEGHECILLDYLNYRQDTLDRLK 76 (102)
T ss_dssp SCCCCCCCCCCCCCCCCCCSSCCCCCCSSCEEEEEEEEETTE--------EEEECTTTSSCEEEECTTCCSSCCCCCHHH
T ss_pred cCCCCCCCccCCceeEeeeeeeccccCCCceEeeEEEEeCCE--------EEEEecCCCCceeeeehhhhhhHHHHHHHH
Confidence 467777776654433344555555444444311 100000 00012234 56789999999999999999
Q ss_pred HhcCCC-cEEEEEc
Q 030853 83 RSLPEN-TKLIVAK 95 (170)
Q Consensus 83 k~Lr~~-~~i~VvK 95 (170)
+.|-+. ++++|++
T Consensus 77 kkLVGKtIkVqVIR 90 (102)
T 1jjg_A 77 ERLVGRVIKTRVVR 90 (102)
T ss_dssp HHHTTCEEEEEEEE
T ss_pred HHhcCceEEEEEEE
Confidence 999888 9999987
No 12
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=35.63 E-value=26 Score=24.36 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=49.8
Q ss_pred HHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC--cEEEEEchHHH-HHHHh-----CCCcccccccCcCcEEEEEe
Q 030853 53 DTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN--TKLIVAKNTLV-YKAIE-----GTQWEALKPCMSGMNAWLFV 124 (170)
Q Consensus 53 ~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~--~~i~VvKNtL~-r~AL~-----~t~~e~L~~~l~G~~alvFs 124 (170)
..|+..--.-+-++.+.-+|+|.+-+.++...|..+ ++++|..|.-. +..+- .++-+.+. .-|.++++|=
T Consensus 9 ~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq--~IG~~~vLyR 86 (98)
T 1jo0_A 9 QFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQ--TIGHILVLYR 86 (98)
T ss_dssp HHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEE--EETTEEEEEC
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEE--EECCEEEEEc
Confidence 346666666677889999999999999999999876 89999988532 22221 23433322 5688888885
Q ss_pred e
Q 030853 125 H 125 (170)
Q Consensus 125 ~ 125 (170)
.
T Consensus 87 ~ 87 (98)
T 1jo0_A 87 P 87 (98)
T ss_dssp C
T ss_pred c
Confidence 3
No 13
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=33.01 E-value=94 Score=20.08 Aligned_cols=63 Identities=5% Similarity=0.104 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhCC-eEEEEEeCCCChhHHH------HHHHhcCCC-cEEEEEc-hHHHHHHHhCCCcccccc
Q 030853 51 TVDTVKTHLENCH-LIAAIKYKGFTVKQFQ------DLRRSLPEN-TKLIVAK-NTLVYKAIEGTQWEALKP 113 (170)
Q Consensus 51 ~v~el~e~~~~s~-~v~v~~~~~lta~q~~------~LRk~Lr~~-~~i~VvK-NtL~r~AL~~t~~e~L~~ 113 (170)
+.+.+.+.+.... ..+++|.++++.-+-. .+++.++.. +.+.+.- |.-+++.|+-+++..+.+
T Consensus 31 l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 102 (110)
T 1sbo_A 31 LKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFK 102 (110)
T ss_dssp HHHHHHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCccceee
Confidence 3445555565554 4679999998866544 445666544 6666554 778889999888876544
No 14
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=30.35 E-value=44 Score=26.93 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=32.9
Q ss_pred HHHhhCCeEEEEEeCC--CChhHHHHHHHhcCCCcEEEEEc
Q 030853 57 THLENCHLIAAIKYKG--FTVKQFQDLRRSLPENTKLIVAK 95 (170)
Q Consensus 57 e~~~~s~~v~v~~~~~--lta~q~~~LRk~Lr~~~~i~VvK 95 (170)
+.|++|++|++.|+.. ++.+++..||+-.++.+-+.|+-
T Consensus 46 ~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~g 86 (259)
T 3rht_A 46 ELLAKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVMLG 86 (259)
T ss_dssp HHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEEC
T ss_pred hHHhcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEec
Confidence 4678999999998765 99999999999998777777774
No 15
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=22.16 E-value=34 Score=19.54 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=14.3
Q ss_pred cccccccCCccCCCCCCCCCCC
Q 030853 9 SSSQNLTLKPSTNPLFHFHPSK 30 (170)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (170)
.+-....|..+.|-+++|+|.-
T Consensus 5 ~~ee~~sC~~aNNFARSF~pML 26 (35)
T 4dxr_B 5 SGEEDYSCALSNNFARSFHPML 26 (35)
T ss_dssp ------CCTTCCTGGGSSSCEE
T ss_pred ccCCCcchHhhhhHHHHhHHHH
Confidence 3445678999999999999954
No 16
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=21.87 E-value=1.9e+02 Score=19.59 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhh---CCeEEEEEeCCCCh------hHHHHHHHhcCCC-cEEEEE-chHHHHHHHhCCCcccc
Q 030853 49 EETVDTVKTHLEN---CHLIAAIKYKGFTV------KQFQDLRRSLPEN-TKLIVA-KNTLVYKAIEGTQWEAL 111 (170)
Q Consensus 49 ~~~v~el~e~~~~---s~~v~v~~~~~lta------~q~~~LRk~Lr~~-~~i~Vv-KNtL~r~AL~~t~~e~L 111 (170)
..+.+.+.+.+.+ ....+++|+++++. .-+..+.+.++.. +.+.+. -+.-+++.|+.+++..+
T Consensus 31 ~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~ 104 (130)
T 2kln_A 31 EDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDLRESLRAASLLDK 104 (130)
T ss_dssp HHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhh
Confidence 3456667777765 35688999998764 4566777888765 666554 47778888998887654
No 17
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=20.05 E-value=1.2e+02 Score=20.49 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhcCCCcceeeEEEEcCeeeccccccccCC
Q 030853 131 AAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDFAGSG 170 (170)
Q Consensus 131 ~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~~~~~~ 170 (170)
.+.|++..|.++.....-.-.-=.|||..|++++.++-|+
T Consensus 31 ~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dle 70 (82)
T 3goe_A 31 TVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTE 70 (82)
T ss_dssp BHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSS
T ss_pred CHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhC
Confidence 4789999999887532111334589999999998887664
No 18
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=20.02 E-value=95 Score=22.34 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=34.0
Q ss_pred hhhccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcC-CC-cEEEEEchHHHHHHHhC
Q 030853 39 IRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLP-EN-TKLIVAKNTLVYKAIEG 105 (170)
Q Consensus 39 ~~~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr-~~-~~i~VvKNtL~r~AL~~ 105 (170)
.++....+.+.++++...++|.+.. |.++|..++.+- ..+. +. ...+=-|..|+.-+++.
T Consensus 21 ~R~~r~~~~r~~Il~aa~~lf~~~G------~~~~tv~~IA~~-agvs~~t~Y~~F~sK~~Ll~~~~~~ 82 (215)
T 2qko_A 21 GHMAQNPERRAALVNAAIEVLAREG------ARGLTFRAVDVE-ANVPKGTASNYFPSRDDLFDQVGKR 82 (215)
T ss_dssp ------CHHHHHHHHHHHHHHHHTC------TTTCCHHHHHHH-SSSTTTCHHHHCSCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhC------hhhccHHHHHHH-cCCCcchHHHhCCCHHHHHHHHHHH
Confidence 3444456778889999999999854 577777766532 1121 22 23334466677666654
Done!