BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030855
MEKGGGGKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSK
SDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAH
ILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQYP

High Scoring Gene Products

Symbol, full name Information P value
NRPB4 protein from Arabidopsis thaliana 9.7e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030855
        (170 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2178158 - symbol:NRPB4 species:3702 "Arabidops...   131  9.7e-09   1


>TAIR|locus:2178158 [details] [associations]
            symbol:NRPB4 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA;IDA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0032774 "RNA biosynthetic process" evidence=IEA] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IDA;IPI]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=RCA;TAS] InterPro:IPR005574
            InterPro:IPR010997 Pfam:PF03874 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 EMBL:AB016893 GO:GO:0006366
            SUPFAM:SSF47819 GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250
            KO:K03012 InterPro:IPR006590 SMART:SM00657 OMA:SQLVFPK
            HOGENOM:HOG000195281 EMBL:AF016511 EMBL:AY086086 EMBL:BT025500
            EMBL:AK317113 IPI:IPI00529292 RefSeq:NP_196554.1 UniGene:At.6949
            ProteinModelPortal:O48890 SMR:O48890 STRING:O48890 PaxDb:O48890
            PRIDE:O48890 EnsemblPlants:AT5G09920.1 GeneID:830853
            KEGG:ath:AT5G09920 TAIR:At5g09920 InParanoid:O48890
            PhylomeDB:O48890 ProtClustDB:CLSN2687520 Genevestigator:O48890
            Uniprot:O48890
        Length = 138

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 29/66 (43%), Positives = 40/66 (60%)

Query:    99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
             EL++  E  K AKCLM+CE + ILE   EQ+  +S DP  ++   F+K L Y K  S + 
Sbjct:    11 ELKIGDEFLK-AKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYK 69

Query:   159 NPQAVK 164
             NP AV+
Sbjct:    70 NPDAVR 75


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.130   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       141   0.00091  102 3  11 23  0.37    32
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  545 (58 KB)
  Total size of DFA:  116 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.79u 0.13s 11.92t   Elapsed:  00:00:00
  Total cpu time:  11.79u 0.13s 11.92t   Elapsed:  00:00:00
  Start:  Fri May 10 00:41:32 2013   End:  Fri May 10 00:41:32 2013

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