BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030856
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 122/156 (78%), Positives = 134/156 (85%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 2 SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 157
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 249 bits (636), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 121/152 (79%), Positives = 132/152 (86%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
ERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKTDL +
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVK 152
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 249 bits (635), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/156 (78%), Positives = 133/156 (85%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIR SF TSKWID+VRTERGSDVII+LVGNKT
Sbjct: 70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
DL +KRQVS EEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 246 bits (629), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 133/156 (85%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 2 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 61
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAG ERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 62 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 157
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 246 bits (628), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/156 (76%), Positives = 133/156 (85%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAG ERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69 TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 246 bits (628), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 133/156 (85%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAG ERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 72 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 167
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 244 bits (623), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/153 (76%), Positives = 131/153 (85%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG
Sbjct: 1 GKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 60
Query: 68 QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
QERFRSLIPSYIR SF TSKWID+VRTERGSDVII+LVGNKTDL
Sbjct: 61 QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+KRQ++IEEGE +++EL+VMFIETSAK G+N+K
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVK 153
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/152 (68%), Positives = 118/152 (77%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
KYKLVFLG+Q+VGKTSIITRF YD FDN YQ+TIGIDFLSKT+YL++ VRLQLWDTAGQ
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
ERFRSLIPSYIR RQSF NT+KWI ++ ERG DVII LVGNKTDL +
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+V+ EEG K++E N F ETSAKAG NIK
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIK 152
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 3 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 64 DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
DTAGQER+ SL P Y R +++F W+ E++ + ++I L GNK
Sbjct: 63 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 122
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
DL KR V EE +A + + +++F+ETSAK N+
Sbjct: 123 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNV 158
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R R SFL+ WI++VR GS+++ +L+GNK+DL E
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 130 RQVSIEEGEAKSRELNVMF-IETSAKAGFNIK 160
R+VS+ E ++ + +++ IETSAK N++
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 97/157 (61%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + ++Y +TIG+DF +T+ LE++TV+LQ+WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R R SF N +WI E+ +V +LVGNK DLV K
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
R V+ +EG + + FIETSAK +N++ T+
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 99/161 (61%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGKT ++ RF D F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ +Y R +SF N WI + +DV +++GNK D+ +K
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
RQVS E GE + + + F+ETSAKA N++ T+ R I
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 129 bits (325), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 99/161 (61%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGKT ++ RF D F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ +Y R +SF N WI + +DV +++GNK D+ +K
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
RQVS E GE + + + F+ETSAKA N++ T+ R I
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 129 bits (325), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R +F W+ E++ + +++I L GNK DL
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E +A + + +++F+ETSAK N+
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 153
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 129 bits (324), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 95/153 (62%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R +SF W+ E++ + +++I L GNK DL
Sbjct: 65 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E ++ + + +++F+ETSAK N+
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 157
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 95/153 (62%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R +SF W+ E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E ++ + + +++F+ETSAK N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R +SF W+ E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E ++ + + +++F+ETSAK N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 92/152 (60%), Gaps = 3/152 (1%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LG+ +VGK+SI+ RF+ + F + TIG FL++ + + + TV+ ++WDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-- 128
F SL P Y R QSF+ W+ E+ + D+II LVGNK D ++
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 129 -KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
+R+V+ EEGE + E ++F ETSAK G N+
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENV 156
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R +SF W+ E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E ++ + + +++F+ETSAK N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R +SF W+ E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E ++ + + +++F+ETSAK N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 93/150 (62%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ D+F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
+ SL P Y R + SF KW+ E++ + ++++ L GNK+DL++ R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+V+ E+ + ++E + F+ETSAK N+K
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVK 163
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R +SF W+ E++ + +++I L GNK DL
Sbjct: 65 GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E ++ + + +++F ETSAK N+
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFXETSAKTSXNV 157
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R +SF W+ E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E ++ + + +++F+ETSAK N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R +SF W+ E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E ++ + + +++F+ETSAK N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 94/154 (61%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDT
Sbjct: 2 SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
AG ER+ SL P Y R +F W+ E++ + +++I L GNK D
Sbjct: 62 AGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
L KR V +E +A + + +++F+ETSAK N+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 155
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 94/154 (61%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ ++KLV LG+ +VGK+S++ RF+ +F ++TI FL++T+ L+D TV+ ++WDT
Sbjct: 2 SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
AGQER+ SL P Y R +F W+ E++ + +++I L GNK D
Sbjct: 62 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
L KR V +E +A + + +++F+ETSAK N+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 155
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 94/153 (61%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
G ER+ SL P Y R +SF W+ E++ + +++I L GNK DL
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
KR V +E ++ + + +++F+ETSAK N+
Sbjct: 123 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 155
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQLWDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
FR++ +Y R ++F N +W V + ++LVGNK+D+ E R
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 127
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
V+ ++GEA ++EL + FIE+SAK N+ T+ +LI
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQLWDTAGQER
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
FR++ +Y R ++F N +W V + ++LVGNK+D+ E R
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
V+ ++GEA ++EL + FIE+SAK N+ T+ +LI
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 96/151 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +GD VGK+ ++ +F +F + TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
FRS+ SY R R++F + + W+++ R S+++I+L+GNK+DL +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R V EEGEA +RE ++F+ETSAK N++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVE 172
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 96/151 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +GD VGK+ ++ +F +F + TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
FRS+ SY R R +F + + W+++ R S+++I+L+GNK+DL +
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+V EEGEA +RE ++F+ETSAK N++
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVE 161
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQ+WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
FR++ +Y R ++F N +W V + ++LVGNK+D+ E R
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
V+ ++GEA ++EL + FIE+SAK N+ T+ +LI
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQLWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
FR++ +Y R ++F N +W V + ++LVGNK+D E R
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
V+ ++GEA ++EL + FIE+SAK N+ T+ +LI
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 88/156 (56%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
SA+ + K+ LGD VGK+SI+ RF+ D FD+ TIG F++KT+ + + +WD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERF SL P Y R + SF KW+ E++ ++++ + GNK
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
DL + R+V +++ + + + + +ETSAK NI+
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQ+WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
FR++ +Y R ++F N +W V + ++LVGNK+D E R
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
V+ ++GEA ++EL + FIE+SAK N+ T+ +LI
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
+ P + +KL+ +G+ SVGKTS + R+ D F + +T+GIDF KT+Y D+ ++L
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
Q+WDTAGQER+R++ +Y R ++SF W +++T + ++LV
Sbjct: 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
GNK DL ++R V E+G + +L F E SAK N+K
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK 173
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+K++ +GD VGKT ++ RF F T+ +T+GIDF +K + ++ V+LQ+WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
ERFRS+ +Y R + SF N W+ E+ DV ++L+GNK D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
+R V E+GE ++E + F+ETSAK G N+
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 88/151 (58%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +G+ VGKT ++ RF F ATIG+DF+ KT+ + V+LQ+WDTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFRS+ SY R +SF +W+ E+ + VI VLVGNK DL E+
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+VS + E S ++ ++ETSAK N++
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVE 177
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 98/157 (62%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R ++ N +W+ E+R S+++I+LVGNK+DL
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
R V +E A + + + FIETSA N++ TI
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 91/153 (59%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
A +KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAG
Sbjct: 5 ALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 68 QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
QERFR++ SY R ++SF N +W+ E+ +V +LVGNK DL
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
K+ V + + L + F+ETSAK N++
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 157
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 98/157 (62%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R ++ N +W+ E+R S+++I+LVGNK+DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
R V +E A + + + FIETSA N++ TI
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++SF N +W+ E+ +V +LVGNK DL K
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+ V + + L + F+ETSAK N++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 116 bits (290), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++SF N +W+ E+ +V +LVGNK DL K
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+ V + + L + F+ETSAK N++
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 176
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++SF N +W+ E+ +V +LVGNK DL K
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+ V + + L + F+ETSAK N++
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 157
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 115 bits (289), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 96/151 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R + +Y R ++ N +W+ E+R S+++I+LVGNK+DL
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R V +E A + + N+ FIETSA N++
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVE 156
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 115 bits (289), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 89/151 (58%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++SF N +W+ E+ +V +LVGNK DL K
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+ V + + L + F+ETSAK N++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 167
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++SF N +W+ E+ +V +LVGNK DL K
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+ V + + L + F+ETSAK N++
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 184
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++S+ N +W+ E+ +V +LVGNK+DL K
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+ V + + L + F+ETSAK N++
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVE 160
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++S+ N +W+ E+ +V +LVGNK+DL K
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+ V + + L + F+ETSAK N++
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVE 160
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
FR++ SY R ++SF N +W+ E+ +V +LVGNK DL K+
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
V + + L + F+ETSAK N++
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVE 150
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 92/150 (61%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R S+ N + W+ E+R +V + L+GNK+DL
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
R V EE + ++E ++F ETSA N+
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENV 163
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+L + K+ LGD VGK+SI+ RF+ D FD TIG F++KT+ ++ + +WDT
Sbjct: 2 SLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 61
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
AGQERFR+L P Y R ++F W+ E+R +++ + GNK D
Sbjct: 62 AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
L + R+V + + + ++ +F+ETSAK NI
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAININ 156
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +G+ SVGKTS + R+ D F + +T+GIDF KT+Y D+ ++LQ+WDTAGQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R +SF W +++T + ++LVGNK D+ ++
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R VS E G + L F E SAK N+K T RL+
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVK---QTFERLV 163
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V LG+ VGKTS++ R+ +KF++ + T+G FL+K + + + V L +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RF +L P Y R SF W+ E+R G+++ + +VGNK DL ++
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
R VSI+E E+ + + TSAK
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAK 151
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
SAL + K+ LGD VGK+SI+ RF+ D FD TIG F++KT+ ++ + +WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAG ERFR+L P Y R ++F W+ E+R +++ + GNK
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
DL + R+V + + + ++ +F+ETSAK NI
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININ 157
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 97/157 (61%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R ++ N +W+ E+R S+++I+LVGNK+DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
R V +E A + + + FIETSA N++ TI
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 97/157 (61%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R ++ N +W+ E+R S+++I+LVGNK+DL
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
R V +E A + + + FIETSA N++ TI
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 89/151 (58%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +G+ SVGKTS + R+ D F + +T+GIDF KT+Y ++ V+LQ+WDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R +SF W +++T + ++LVGNK D+ E+
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R V E+G+ + +L F E SAK +++
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVR 174
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+S++ RF + F +Y TIG+DF +T+ + V+LQ+WDTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ +Y R +SF+N +W+ E+ + DV +LVGNK D E+
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPER 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
+ V E+ + ++ + ETSAK N++ I L+
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 96/157 (61%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R ++ N +W+ E+R S+++I LVGNK+DL
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
R V +E A + + + FIETSA N++ TI
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQ 68
+K+V +GD VGK+++++RF D+F+ ++TIG++F +K++ L++ + ++ Q+WDTAGQ
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
ER+R++ +Y R + SF N KW+ E+R S+++I+LVGNK+DL
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R ++ + +++ + FIETSA N++
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVE 159
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 96/157 (61%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R ++ N +W+ E+R S+++I LVGNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
R V +E A + + + FIETSA N++ TI
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 89/151 (58%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++SF N +W+ E+ +V +LVG K DL K
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
+ V + + L + F+ETSAK N++
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 159
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 93/161 (57%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +G+ VGK+ ++ RF D + N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++SF W+ E+ S V+ +LVGNK DL +K
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R V + + + + F+ETSA N++ T+ R I
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S+ YK+V GD +VGK+S + R ++F AT+G+DF KT+ ++ LQLWD
Sbjct: 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRS+ SY R +SFLN +W+D + V I+LVGNK
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143
Query: 125 DLVE------KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
D+ + ++ V GE + +F ETSAK G NI
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 93/161 (57%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +G+ VGK+ ++ RF D + N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++SF W+ E+ S V+ +LVGNK DL +K
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R V + + + + F+ETSA N++ T+ R I
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 93/161 (57%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +G+ VGK+ ++ RF D + N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++SF W+ E+ S V+ +LVGNK DL +K
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R V + + + + F+ETSA N++ T+ R I
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 95/161 (59%), Gaps = 4/161 (2%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +G GK+ ++ +F+ +KF TIG++F S+ + + +TV+LQ+WDTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFRS+ SY R R+++ + + W+ + RT +++++L GNK DL +
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK----GCSPTI 166
R+V+ E ++E +MF+ETSA G N++ C+ TI
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 91/159 (57%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP + +K + +GD VGK+ ++ +F KF TIG++F ++ + + + ++LQ
Sbjct: 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 62 LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
+WDTAGQERFR++ SY R R ++ + S W+ + R + +I+L+G
Sbjct: 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
NK DL +R V+ EE + + E ++F+E SAK G N++
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 166
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF D+F+ ++TIG++F ++T+ +E++ ++ Q+WDTAG E
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R S+ N + W+ E+R +V + L+GNK+DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R V +E + + E ++F ETSA N R LI
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSA---LNSDNVDKAFRELI 168
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 83/145 (57%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V LG+ VGKTS++ R+ +KF++ + T+ FL+K + + + V L +WDTAGQE
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RF +L P Y R SF W+ E+R G+++ + +VGNK DL ++
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
R VSI+E E+ + + TSAK
Sbjct: 141 RHVSIQEAESYAESVGAKHYHTSAK 165
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 83/145 (57%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V LG+ VGKTS++ R+ +KF++ + T+ FL+K + + + V L +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RF +L P Y R SF W+ E+R G+++ + +VGNK DL ++
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
R VSI+E E+ + + TSAK
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAK 151
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
+P A K +++ +G + VGKTS++ RF D F ++T+G+DF KT+ L + +RLQ
Sbjct: 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 62 LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
+WDTAGQERF S+ +Y R +++F + KW+ + D ++LVG
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
NK D R+++ ++GE ++++ M F E SAK FN+
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +G+ SVGKTS + R+ D F + +T+GIDF KT+Y D+ ++LQ+WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R +SF W +++T + ++LVGNK D ++
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R VS E G + L F E SAK N+K T RL+
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVK---QTFERLV 166
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
L K++ +G+ VGK+S++ RF D FD ATIG+DF KT+ ++ +L +WDTA
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTD 125
GQERFR+L PSY R R +F+ W++E+ T +D++ LVGNK D
Sbjct: 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
E R+V EG +R+ + +FIE SAK
Sbjct: 133 -KENREVDRNEGLKFARKHSXLFIEASAK 160
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGKTS++ +++ KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
F+SL ++ R +F W DE + + V++GNK DL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKGCSPTIRR 168
E RQV+ + +A + N+ + ETSAK N++ TI R
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 90/159 (56%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP + +K + +GD VGK+ ++ +F KF TIG++F ++ + + + ++LQ
Sbjct: 23 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 62 LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
+WDTAGQ RFR++ SY R R ++ + S W+ + R + +I+L+G
Sbjct: 83 IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
NK DL +R V+ EE + + E ++F+E SAK G N++
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 181
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGKTS++ +++ KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
F+SL ++ R +F W DE + + V++GNK DL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKGCSPTIRR 168
E RQV+ + +A + N+ + ETSAK N++ TI R
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGKTS++ +++ KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
F+SL ++ R +F W DE + + V++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKGCSPTIRR 168
E RQV+ + +A + N+ + ETSAK N++ TI R
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 88/151 (58%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +G+ GK+ ++ +F+ KF + TIG++F SK + + + V+LQ+WDTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFRS+ SY R R+++ + W+ + R +++I+L GNK DL
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+V+ E ++E +MF+ETSA G N++
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVE 161
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 94/161 (58%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +G+ VGKT++++RF ++F + + TIG++F ++T+ L V+ Q+WDTAG E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R Q++ +W+ E+ + ++++LVGNK+DL +
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R+V EE + ++F+ETSA N++ T+ + I
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 94/161 (58%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +G+ VGKT++++RF ++F + + TIG++F ++T+ L V+ Q+WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R Q++ +W+ E+ + ++++LVGNK+DL +
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R+V EE + ++F+ETSA N++ T+ + I
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 98/178 (55%), Gaps = 10/178 (5%)
Query: 2 APVSALAK---YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
P+ + K +K++ LGD VGK+S++ R++ +KFD+ TIG++FL+K + ++ V
Sbjct: 1 GPLGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFV 60
Query: 59 RLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSD 114
+Q+WDTAGQERFRSL + R QSF N S W E +
Sbjct: 61 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 120
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGC-SPTIRRLI 170
V++GNKTD+ E RQVS EE +A ++ + + ETSAK N+ +RR++
Sbjct: 121 FPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA S+L +K++ LGD VGK+S++ R++ +KFD TIG++FL+K + ++ V +
Sbjct: 3 MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 60
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVI 116
Q+WDTAGQERFRSL + R QSF N S W E +
Sbjct: 61 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 120
Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGC-SPTIRRLI 170
V++GNK D+ E RQVS EE +A R+ + + ETSAK N+ +RR++
Sbjct: 121 FVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA S+L +K++ LGD VGK+S++ R++ +KFD TIG++FL+K + ++ V +
Sbjct: 1 MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVI 116
Q+WDTAGQERFRSL + R QSF N S W E +
Sbjct: 59 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGC-SPTIRRLI 170
V++GNK D+ E RQVS EE +A R+ + + ETSAK N+ +RR++
Sbjct: 119 FVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGKTS++ +++ KF N Y+ATIG DFL+K + ++DR V +Q+WDTAG ER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
F+SL ++ R +F W DE + + V++GNK DL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKGCSPTIRR 168
E RQV+ + +A + N+ + ETSAK N++ TI R
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 88/151 (58%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +G+ GK+ ++ +F+ KF + TIG++F SK + + + V+LQ+WDTAGQE
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFRS+ SY R R+++ + W+ + R +++I+L GNK DL
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+V+ E ++E +MF+ETSA G +++
Sbjct: 132 REVTFLEASRFAQENELMFLETSALTGEDVE 162
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+V +G+ +VGK+S+I R+ F Y+ TIG+DFL + + + D VRL LWDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
F ++ +Y R R+SF S W ++V E G D+ LV NK DL++
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
+ EE E ++ L + F TS K N+
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + V L
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
QLWDTAGQERFRSL ++ R +QSFLN W+ +++ + IVL
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
+GNK DL ++R+V+ + + + + + ETSA G N++ T+ LI
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 87/151 (57%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +G+ GK+ ++ +F+ KF + TIG++F SK + + + V+LQ+WDTAG E
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFRS+ SY R R+++ + W+ + R +++I+L GNK DL
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+V+ E ++E +MF+ETSA G +++
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGEDVE 159
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + + V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
QLWDTAG ERFRSL ++ R +QSFLN W+ +++ + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
+GNK DL ++R+V+ + + + + + ETSA G N++ T+ LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + + V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
QLWDTAG ERFRSL ++ R +QSFLN W+ +++ + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
+GNK DL ++R+V+ + + + + + ETSA G N++ T+ LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + + V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
QLWDTAG ERFRSL ++ R +QSFLN W +++ + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
+GNK DL ++R+V+ + + + + + ETSA G N++ T+ LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + + V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
QLWDTAG ERFRSL ++ R +QSFLN W +++ + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
+GNK DL ++R+V+ + + + + + ETSA G N++ T+ LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRL 60
K + LGD VGKTS++ ++ KF++ + T+GIDF K + + + L
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIVL 119
QLWDTAG ERFRSL ++ R QSFLN WI +++ S + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
GNK+DL ++R V EE + + + + ETSA G NI + LI
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 71/115 (61%)
Query: 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
L+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 72 RSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
R++ SY R ++SF N +W+ E+ +V +LVGNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGK+S++ R++ +KFD+ TIG++FL++ + ++ R V LQ+WDTAGQER
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
F+SL + R RQSF N W E + V++GNK D
Sbjct: 69 FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD- 127
Query: 127 VEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
E RQV+ EE + E + ++ETSAK N+
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNV 161
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +GD +VGKT + RF +F + +ATIG+DF + + ++ +++QLWDTAGQE
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 70 RFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
RFR S++ Y R SF + WI+E + +D+ +LVGNK DL
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
QV + + + + ETSAK
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAK 176
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +GD +VGKT + RF +F + +ATIG+DF + + ++ +++QLWDTAGQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 70 RFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
RFR S++ Y R SF + WI+E + +D+ +LVGNK DL
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
QV + + + ++ ETSAK
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAK 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
++LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 68
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
TAGQE + ++ +Y R +SF T+ + +++ R + +V +LVGNK
Sbjct: 69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
+DL +KRQVS+EE + ++ + NV ++ETSAK N+
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 164
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
++LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 72
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
TAGQE + ++ +Y R +SF T+ + +++ R + +V +LVGNK
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
+DL +KRQVS+EE + ++ + NV ++ETSAK N+
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 168
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
++LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
TAGQE + ++ +Y R +SF T+ + +++ R + +V +LVGNK
Sbjct: 61 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
+DL +KRQVS+EE + ++ + NV ++ETSAK N+
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 156
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + DT
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ +Y R +SF T+ + +++ R + +V +LVGNK+
Sbjct: 60 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
DL +KRQVS+EE + ++ + NV ++ETSAK N+
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANV 154
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 9/166 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE 69
K++ LGD VGKTS++ R++ DK+ Y+ATIG DFL+K + ++ D+ +Q+WDTAGQE
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD----VIIVLVGNKTD 125
RF+SL ++ R SF N W DE + V++GNK D
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 126 LVEKRQVSIEEGE---AKSRELNVMFIETSAKAGFNIKGCSPTIRR 168
E +++ E+ AKS +F+ TSAK N+ I R
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIAR 174
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
++LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
TAG E + ++ +Y R +SF T+ + +++ R + +V +LVGNK
Sbjct: 61 TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
+DL +KRQVS+EE + ++ + NV ++ETSAK N+
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 156
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S+LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 3 SSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 61
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVI-IVLVGN 122
TAG E + ++ +Y R +SF T+++ +++ R + D I +++VGN
Sbjct: 62 TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
K+DL E+RQV +EE +K+ E V ++ETSAK N+
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANV 158
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + DTA
Sbjct: 1 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVI-IVLVGNKT 124
G E + ++ +Y R +SF T+++ +++ R + D I +++VGNK+
Sbjct: 60 GLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
DL E+RQV +EE +K+ E V ++ETSAK N+
Sbjct: 120 DLEERRQVPVEEARSKAEEWGVQYVETSAKTRANV 154
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 40/191 (20%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------- 56
+ YK V LG+ SVGK+SI+ R D F TIG F + + L D
Sbjct: 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 57 --------------------------TVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXX 90
++ +WDTAGQER+ S++P Y R
Sbjct: 66 NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 91 XXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150
+ W+++++ S+ II+LV NK D K QV I E + +++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182
Query: 151 TSAKAGFNIKG 161
TSAK G NIK
Sbjct: 183 TSAKTGTNIKN 193
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 2/167 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S KY+LV +G VGK+++ +F+ F Y TI D +K ++DR RL + D
Sbjct: 1 SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILD 59
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
TAGQE F ++ Y+R R SF K+ ++ R + + ++L+GNK
Sbjct: 60 TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
DL +RQV+ EEG+ +R+L V ++E SAK N+ + R+I
Sbjct: 120 ADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + + TV L LWDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
+ L P R + S+ N S KWI E++ V IVLVG K DL +
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRDD 127
Query: 130 RQVSIEEGEA------KSRELNVM-----FIETSAKAGFNIKG 161
+Q I+ A + EL + +IE S+K+ N+KG
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKG 170
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 131
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 132 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 163
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 119
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 120 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 151
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+++ +AKS R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 GMTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R +SF + + +++ R + DV +VLVGNK+
Sbjct: 60 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
DL R V ++ + +R + FIETSAK
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
+ L P R + S+ N + KWI E+R V I+LVG K DL +
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
Query: 130 RQVSIEEGEA------KSREL-----NVMFIETSAKAGFNIKG 161
+Q I+ A + EL + ++IE S+K N+K
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKA 168
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E++ L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV LG VGK+++ +F+ F + Y TI D K + ++ + L++ DTA
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E+F ++ Y++ + +F + +++ R + DV ++LVGNK D
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIK 160
L ++R V E+G+ +R+ N F+E+SAK+ N+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y T+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTAGQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 62
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
E + ++ Y+R +SF + + +++ R + DV +VLVGNK DL
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 121
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
R V ++ + +R + FIETSAK
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y T+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+++ +AKS R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD GKT+ + R + +F+ Y ATIG++ + Y ++ +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
+F L Y R ++ N W D VR ++ IVL GNK D V+
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD-VK 129
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+R+V +AK+ R+ N+ + + SAK+ +N +
Sbjct: 130 ERKV-----KAKTITFHRKKNLQYYDISAKSNYNFE 160
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV LG VGK+++ +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E+F ++ Y++ + +F + +++ R + DV ++LVGNK D
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
L ++R V E+G+ +R+ N F+E+SAK+ N+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLW 63
S + + K+V LGD + GKTS+ T F + F Y+ TIG+DF + + L + V LQ+W
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 64 DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW---IDEVRTERGSDVIIVLV 120
D GQ ++ YI QSF N W + +V E + ++ LV
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162
GNK DL R + E+ +E SAK G ++ C
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD GKT+ + R + +F+ Y ATIG++ + Y ++ +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
+F L Y R ++ N W D VR ++ IVL GNK D+ E
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 123
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
++ +AK+ R+ N+ + + SAK+ +N +
Sbjct: 124 RKV------KAKTITFHRKKNLQYYDISAKSNYNFE 153
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD GKT+ + R + +F+ Y ATIG++ + Y ++ +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
+F L Y R ++ N W D VR ++ IVL GNK D+ E
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 122
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
++ +AK+ R+ N+ + + SAK+ +N +
Sbjct: 123 RKV------KAKTITFHRKKNLQYYDISAKSNYNFE 152
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKTS++ + + + Y T D S + ++ R VRLQL DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
F L P SF N S KW+ E+R I+LVG ++DL E
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLRED 139
Query: 130 RQVSIEEGEAKSREL 144
+V IE + K + +
Sbjct: 140 VKVLIELDKCKEKPV 154
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G + VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAG
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D+
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 129
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+++ +AKS R+ N+ + + SAK+ +N +
Sbjct: 130 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 160
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
L R V + + +R + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + + + Y AT+G++ + ++ +WDTAGQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D +
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 131
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+ R+V +AKS R+ N+ + + SAK+ +N +
Sbjct: 132 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 163
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
++ +YKLV LG VGK+++ +F+ F Y TI D K + ++ + L++ D
Sbjct: 1 GSMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILD 59
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
TAG E+F ++ Y++ + +F + +++ R + DV ++LVGNK
Sbjct: 60 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 119
Query: 124 TDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
DL ++R V E+G+ +R+ N F+E+SAK+ N+
Sbjct: 120 CDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINV 156
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAG
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
E+F L Y R ++ N W D VR ++ IVL GNK D+
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 123
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
+++ +AKS R+ N+ + + SAK+ +N +
Sbjct: 124 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 154
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
L R V + + +R + +IETSAK
Sbjct: 120 LA-GRTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV LG VGK+++ +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E+F ++ Y++ + +F + +++ R + DV ++LVGNK D
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
L ++R V E+G+ +R+ N F+E+SAK+ N+
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINV 154
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 19/176 (10%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
+ Y++V +G+Q VGK+++ F ++D D +TY+ T+ +D S T+ L
Sbjct: 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56 RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-D 114
L +W+ G+ + L ++ R SF S+ ++R R + D
Sbjct: 61 ----LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
+ I+LVGNK+DLV R+VS+ EG A + + FIETSA N+K I R +
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 10 YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
Y++V +G+Q VGK+++ F ++D D +TY+ T+ +D S T+ L
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 60
Query: 60 LQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIV 118
L +W+ G+ + L ++ R SF S+ ++R R + D+ I+
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
LVGNK+DLV R+VS+ EG A + + FIETSA N+K
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 160
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 19/176 (10%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
+ Y++V +G+Q VGK+++ F ++D D +TY+ T+ +D S T+ L
Sbjct: 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56 RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-D 114
L +W+ G+ + L ++ R SF S+ ++R R + D
Sbjct: 61 ----LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
+ I+LVGNK+DLV R+VS+ EG A + + FIETSA N+K I R +
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 10 YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
Y++V +G+Q VGK+++ F ++D D +TY+ T+ +D S T+ L
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 91
Query: 60 LQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIV 118
L +W+ G+ + L ++ R SF S+ ++R R + D+ I+
Sbjct: 92 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
LVGNK+DLV R+VS+ EG A + + FIETSA N+K
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAG 67
YK+ +GD VGKT+ I R + +F+ Y AT+G +L+D+ ++ +WDTAG
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 68 QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
QE+ L Y R + N ++W+ E + G++ IV+ NK D+
Sbjct: 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158
++++S + + N + E SAK N
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
A+ KL G VGK++++ RF+ +F Y T+ + + ++D V +++ DTAG
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAG 85
Query: 68 QERFRSLIPSYIRXXXXXXXXXXXXXRQSF---LNTSKWIDEVRTERGSDVIIVLVGNKT 124
QE ++R R SF L +DE++ + +V ++LVGNK
Sbjct: 86 QEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKA 142
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
DL RQVS EEGE + EL F E SA G
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTG 174
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
+ L P R + S+ N KW+ E+R +V IVLVG K DL +
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRDD 128
Query: 130 RQ--------VSIEEGEAKSRELN-VMFIETSAKAGFNIKG 161
+ ++ +GE +++ +IE S+K N+K
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKA 169
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
+ L P R + S+ N KW+ E++ + IVLVG K DL +
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 130 RQ----------VSIEEGEAKSRELN-VMFIETSAKAGFNIKGCSPTIRRL 169
+Q ++ +GE + + V ++E S+K N+K T R+
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRV 176
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++A Y++V LGD VGKTS+ + F K + +G D +T+ ++ L + DT
Sbjct: 1 SMALYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDT 59
Query: 66 AGQERFRSLIP--SYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGN 122
E+ S ++ R SF + S+ I RT + V I+LVGN
Sbjct: 60 WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
K DL R+VS+EEG A + + FIETSA N+
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 126
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 127 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +G VGK+++ +F+ F + Y TI D +K ++ RL + DTAGQE
Sbjct: 10 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQE 68
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
F ++ Y+R RQSF K ++ R + D +VLVGNK DL
Sbjct: 69 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
+RQV E A +V + E SAK N+
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNV 159
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
SA + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWD
Sbjct: 5 SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWD 63
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
TAGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 64 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 122
Query: 124 TDL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 123 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 166
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 141
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 132
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
+ L P SF N +KW EVR I+LVG K DL +
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
+ ++ +G A +RE+ +V ++E SA
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
+ L P SF N +KW EVR I+LVG K DL +
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
+ ++ +G A +RE+ +V ++E SA
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
+ L P SF N +KW EVR I+LVG K DL +
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
+ ++ +G A +RE+ +V ++E SA
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
P+ ++ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L
Sbjct: 1 GPLGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62 LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
+ DTAGQE + ++ Y+R +SF + ++ +++ R + DV +VLV
Sbjct: 60 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
GNK DL R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
P+ ++ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L
Sbjct: 1 GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62 LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
+ DTAGQE + ++ Y+R +SF + ++ +++ R + DV +VLV
Sbjct: 60 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
GNK DL R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGK ++ + + F Y T+ D S + ++ + V L LWD
Sbjct: 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWD 64
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
TAGQE + L P SF N +KW EVR + I+LVG K
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTK 123
Query: 124 TDL------VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
DL +EK + ++ +G A ++E+ V ++E SA
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+ LG +SVGK+S+ +F+ +F ++Y TI F +K + + + LQL DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
+ +Y +SF + K +D V + + I+LVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
+R +S EEG+A + N F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P S+ N +KW EVR S II LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E++ V ++E SA
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 69
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P S+ N +KW EVR S II LVG K DL
Sbjct: 70 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E++ V ++E SA
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 165
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+ LG +SVGK+S+ +F+ +F ++Y TI F +K + + + LQL DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
+ +Y +SF + K +D V + + I+LVGNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 118
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
+R +S EEG+A + N F+E+SAK
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAK 146
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P S+ N +KW EVR S II LVG K DL
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 129
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E++ V ++E SA
Sbjct: 130 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 166
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
Y++ G VGK+S++ RF+ F +Y T+ D + + + LQ+ DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLV 127
+F ++ I RQS +++ +G + I+LVGNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+V E EA +R F+ETSAK N+K
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVK 155
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+ LG +SVGK+S+ +F+ +F ++Y TI F +K + + + LQL DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
+ +Y +SF + K +D V + + I+LVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
+R +S EEG+A + N F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 4 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 62
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 4 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 3 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 163
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 5 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 63
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 64 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 122
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 3 AAIRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 61
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 163
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 139
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + ++ ++E SAK
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 4 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 7 LAKY-KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
L +Y K+V LG + VGKTS+ +F+ +F Y T+ + SK + L L L DT
Sbjct: 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDT 79
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124
AGQ+ + L S+I SF ++ G + V +VLVGNK
Sbjct: 80 AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
DL +R+V EG+ + F+E+SA+
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFMESSAR 169
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKK 139
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + ++ ++E SAK
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 125
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +KW EVR + I+LVG K DL
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 GMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R +SF + + +++ R + DV +VLVGNK+
Sbjct: 60 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
DL R V ++ + +R + FIETSAK
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R +SF + + +++ R + DV +VLVGNK+
Sbjct: 60 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
DL R V ++ + +R + FIETSAK
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 3/170 (1%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
P+ ++ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L
Sbjct: 1 GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62 LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
+ DTAG E + ++ Y+R +SF + ++ +++ R + DV +VLV
Sbjct: 60 ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
GNK DL R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 80
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW+ EV+ +V I+LV NK
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKK 139
Query: 125 DLVEKRQVSIE 135
DL V E
Sbjct: 140 DLRSDEHVRTE 150
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
L R V + + +R + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK+D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 7 SMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 65
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK
Sbjct: 66 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 125
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
DL R V + + +R + +IETSAK
Sbjct: 126 DLA-ARTVESRQAQDLARSYGIPYIETSAK 154
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+ LG +SVGK+S+ +F+ +F ++ TI F +K + + + LQL DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
+ +Y +SF + K +D V + + I+LVGNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 121
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
+R +S EEG+A + N F+E+SAK
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAK 149
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + + ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
P L YKLV +GD VGK+++ +F F + Y TI +L T ++++ L +
Sbjct: 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63 WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
DTAGQE F ++ Y+R + SF + ++ + R + ++LV
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
NK DL+ R+V+ ++G+ + + N+ +IETSAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 3/166 (1%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R +SF + + + +++ R + DV +VLVGNK
Sbjct: 77 AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
DL R V ++ ++ + FIETSAK ++ T+ R I
Sbjct: 137 DL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + L P S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
DL +++ V EEG + ++ ++E SAK
Sbjct: 120 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YK+V LG VGK+++ +F+ F Y TI DF K + ++ L++ DTA
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E+F S+ YI+ +QSF + D++ R +R V ++LVGNK D
Sbjct: 60 GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKA 155
L +R+VS EG A + E F+ETSAK+
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKS 149
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + +YKLV +G VGK+++ + + + F + Y +I D K + ++ T L + D
Sbjct: 5 SDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILD 63
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
TAGQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK
Sbjct: 64 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 123
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
DL R V + + +R + +IETSAK ++ T+ R I
Sbjct: 124 CDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
AG E + ++ Y+R +SF + + +++ R + DV +VLVGNK
Sbjct: 77 AGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 136
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
DL R V ++ + +R + FIETSAK
Sbjct: 137 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 165
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P S N KW EV+ +V I+LVGNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
+++ V EEG + + ++E SAK
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 160
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
L R V + + +R + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK ++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P S N KW EV+ +V I+LVGNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
+++ V EEG + + ++E SAK
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 160
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
+SA+ K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+
Sbjct: 5 ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLF 63
Query: 64 DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGN 122
DTAGQE + L P SF N KW+ E+ T +LVG
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGT 122
Query: 123 KTDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+ DL +EK + ++ E E +R+L V ++E SA
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + D F Y T+ D + ++ + + L L+DTAGQE
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N +W+ E++ E +V +L+G + DL
Sbjct: 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLRDD 137
Query: 127 ---------VEKRQVSIEEGEAKSRELN-VMFIETSA 153
++++ + +E+G+ ++E+ ++E SA
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
AGQE + P S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL 126
DL
Sbjct: 120 DL 121
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
P L YKLV +GD VGK+++ +F F Y TI +L T ++++ L +
Sbjct: 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63 WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
DTAGQE F ++ Y+R + SF + ++ + R + ++LV
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
NK DL+ R+V+ ++G+ + + N+ +IETSAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGN+ D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
P L YKLV +GD VGK+++ +F F Y TI +L T ++++ L +
Sbjct: 7 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTE-IDNQWAILDV 65
Query: 63 WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
DTAGQE F ++ Y+R + SF + ++ + R + ++LV
Sbjct: 66 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 125
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
NK DL+ R+V+ ++G+ + + N+ +IETSAK
Sbjct: 126 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 158
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
YK++ LG VGK+++ ++ ++ +A +++ ++ L ++D Q+
Sbjct: 3 YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 60
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
R L + + SF S+ ++R R +D V I+LVGNK+DLV
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R+VS++EG A + + FIETSA N++ + R I
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
VS + YK++ LG VGK+++ ++ ++ +A +++ ++ L ++
Sbjct: 2 VSDESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY 59
Query: 64 DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
D Q+ R L + + SF S+ ++R R +D V I+LVGN
Sbjct: 60 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 119
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
K+DLV R+VS++EG A + + FIETSA N++ + R I
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+V +GD +VGKT ++ F + Y T+ +F S M ++ L LWDTAGQE
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE- 128
+ L P R SF N S KW E++ + VLVG K DL +
Sbjct: 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 142
Query: 129 -KRQVSIEEGEAKSRELN-VMFIETS--AKAGFN 158
V+ +EG+ ++L V +IE S AK G N
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF + +KW EVR + I+LVG K DL
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y +I D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF + +KW EVR + I+LVG K DL
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI + K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF + +KW EVR + I+LVG K DL
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ +G A ++E+ V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
P L YKLV +GD VGK+++ +F F + Y TI D K ++++ L +
Sbjct: 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDV 70
Query: 63 WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
DTAGQE F ++ Y+R + SF + ++ + R + ++LV
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
NK DL+ R+V+ ++G+ + + N+ +IETSAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + + TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
YK++ LG VGK+++ ++ ++ +A +++ ++ L ++D Q+
Sbjct: 8 YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 65
Query: 70 RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
R L + + SF S+ ++R R +D V I+LVGNK+DLV
Sbjct: 66 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 125
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
R+VS++EG A + + FIETSA N++ + R I
Sbjct: 126 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+V +GD +VGKT ++ F + Y T+ +F S M ++ L LWDTAGQE
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE- 128
+ L P R SF N S KW E++ + VLVG K DL +
Sbjct: 83 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 141
Query: 129 -KRQVSIEEGEAKSRELN-VMFIETS--AKAGFN 158
V+ +EG+ ++L V +IE S AK G N
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 175
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTG 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV +GD + GKT ++ +F Y T+ ++++ + ++ R V L LWDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQED 70
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
+ L P S N KWI EV V I+LVG K DL
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 130 RQ------------VSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
Q V+ +EG++ + ++ + E SAK G+ ++
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVR 173
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+V +GD GKTS++ F F +Y T+ ++ + ++ + V L +WDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
+ L P + SF N ++W EV V I++VG KTDL +
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 130 RQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
+ V+ G+ +R + V ++E SA+ N+
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 197
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G+E + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTT 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
QE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
QE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 35/176 (19%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71 FRSLIP-SYIRXXXXXXXXXXXX------------------XRQSFLNT-SKWIDEVRTE 110
+ L P SY + SF N +KW EVR
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR-H 124
Query: 111 RGSDVIIVLVGNKTDL------VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
+ I+LVG K DL +EK + ++ +G A ++E+ V ++E SA
Sbjct: 125 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 180
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R +SF + ++ +++ R + DV +VLVGNK+D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
TAGQE + L P SF N KW+ E+ T +LVG +
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
DL +EK + ++ E E +R+L V ++E SA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGLED 68
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P S N KW EV+ +V I+LVGNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
+++ V EEG + + ++E SAK
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
TAGQE + L P SF N KW+ E+ T +LVG +
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
DL +EK + ++ E E +R+L V ++E SA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+D
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 59
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
TAGQE + L P SF N KW+ E+ T +LVG +
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 118
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
DL +EK + ++ E E +R+L V ++E SA
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTA 59
Query: 67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R +SF + ++ +++ R + DV +VLVGNK D
Sbjct: 60 GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
L R V + + +R + +IETSAK ++ T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 132
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 169
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 123
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 160
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 124
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGK ++ + +KF + Y T+ D + T+ + L L+D
Sbjct: 6 SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 64
Query: 65 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
TAGQE + L P SF N KW+ E+ T +LVG +
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 123
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
DL +EK + ++ E E +R+L V ++E SA
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 22 KTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRX 81
K+S++ RF+ F +TY TI D + + + LQ+ DT G +F ++ I
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 82 XXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVSIEEGEA 139
+QS + +GS D+ ++LVGNK D + R+V E +A
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQA 138
Query: 140 KSRELNVMFIETSAKAGFNIK 160
++E F+ETSAK +N+K
Sbjct: 139 VAQEWKCAFMETSAKMNYNVK 159
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ LG+ VGK+++ F + DN ++ D + + ++ V L ++D Q
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 70 RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
+ + ++ R+SF + + +R R D+ ++LVGNK+DL
Sbjct: 73 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 132
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+VS+EEG + L+ IETSA N +
Sbjct: 133 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 165
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
++A + K+ +G+ +VGK+++I+ F KF Y T G++ + + + D TV ++
Sbjct: 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 62 LW--DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWID---EVRTERGSDVI 116
L+ DTAG + ++ I Y +SF + W + R +R +
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 117 IVLVGNKTDLVEKR-QVSIEEGEAKSRELNVMFIETSA 153
VLV NKTDL +R QV ++ + + + F + SA
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y + D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +K + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
+ L P SF N KW+ E+ T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
+EK + ++ E E +R+L V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP +A+ KLV +GD GKT+++ D + TY T+ ++ + + E++ V L
Sbjct: 3 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 61
Query: 62 LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
LWDT+G + ++ P R ++++ KW E+ + ++L
Sbjct: 62 LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 119
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
+G KTDL ++ +S E+G A +++L +++E SA
Sbjct: 120 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP +A+ KLV +GD GKT+++ D + TY T+ ++ + + E++ V L
Sbjct: 4 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 62
Query: 62 LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
LWDT+G + ++ P R ++++ KW E+ + ++L
Sbjct: 63 LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 120
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
+G KTDL ++ +S E+G A +++L +++E SA
Sbjct: 121 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP +A+ KLV +GD GKT+++ D + TY T+ ++ + + E++ V L
Sbjct: 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78
Query: 62 LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
LWDT+G + ++ P R ++++ KW E+ + ++L
Sbjct: 79 LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 136
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
+G KTDL ++ +S E+G A +++L +++E SA
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +G+ VGK+++ F + D+ ++ D + + ++ V L ++D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 70 RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
+ + ++ R+SF + + +R R D+ ++LVGNK+DL
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+VS+EEG + L+ IETSA N +
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +G+ VGK+++ F + D+ ++ D + + ++ V L ++D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 70 RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
+ + ++ R+SF + + +R R D+ ++LVGNK+DL
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R+VS+EEG + L+ IETSA N +
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
K K+V +GD GKT+++ F D F Y T+ ++ + + ++ + + L LWDT+G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 86
Query: 69 ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
+ ++ P SY R L++ KW E++ E + ++LVG K+D
Sbjct: 87 PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 143
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
LVE RQ VS ++G ++++ +IE SA
Sbjct: 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
K K+V +GD GKT+++ F D F Y T+ ++ + + ++ + + L LWDT+G
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65
Query: 69 ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
+ ++ P SY R L++ KW E++ E + ++LVG K+D
Sbjct: 66 PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 122
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
LVE RQ VS ++G ++++ +IE SA
Sbjct: 123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
K K+V +GD GKT+++ F D F Y T+ ++ + + ++ + + L LWDT+G
Sbjct: 23 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 81
Query: 69 ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
+ ++ P SY R L++ KW E++ E + ++LVG K+D
Sbjct: 82 PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 138
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
LVE RQ VS ++G ++++ +IE SA
Sbjct: 139 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLWDT 65
KL +G+ GKT+++ + K + AT+GID + + D+ R L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSK-WIDEVRTERGSDVIIVLVGNKT 124
AG+E F S P + Q+ ++ K W+ ++ R S ++LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGTHL 120
Query: 125 DLVEKRQ 131
D+ +++Q
Sbjct: 121 DVSDEKQ 127
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLW 63
+ KL +G+ GKT+++ + K + AT+GID + + D+ R L +W
Sbjct: 2 RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 64 DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSK-WIDEVRTERGSDVIIVLVGN 122
D AG+E F S P + Q+ ++ K W+ ++ R S ++LVG
Sbjct: 62 DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGT 120
Query: 123 KTDLVEKRQ 131
D+ +++Q
Sbjct: 121 HLDVSDEKQ 129
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +L+ LG + GKT+I+ +F + D T T+G + KT LE R +L +WD GQ
Sbjct: 16 ELRLLMLGLDNAGKTTILKKFNGEDID-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 70
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLV 127
+ RS +Y RQ + + + + ER + +++ NK DL
Sbjct: 71 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL- 129
Query: 128 EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGCS 163
G S + V+ +++ + I+GCS
Sbjct: 130 --------PGALSSNAIREVLELDSIRSHHWCIQGCS 158
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +L+ LG + GKT+I+ +F + D T T+G + KT LE R +L +WD GQ
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
+ RS +Y RQ + + + + ER + +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +L+ LG + GKT+I+ +F + D T T+G + KT LE R +L +WD GQ
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
+ RS +Y RQ + + + + ER + +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
+ P + + +L +G Q GKT+ + +F+ T+G + T V +
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTI 69
Query: 61 QLWDTAGQERFRSLIPSYIR 80
+LWD GQ RFRS+ Y R
Sbjct: 70 KLWDIGGQPRFRSMWERYCR 89
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
+ P + + +L +G Q GKT+ + +F T+G + T V +
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTI 69
Query: 61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
++WD GQ RFRS+ Y R R+ + + + + I VLV
Sbjct: 70 KIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 121 -GNKTDL 126
GNK DL
Sbjct: 130 LGNKRDL 136
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
L LG + GK+++ +F+ +F + Y + D S ++ + V L++ DTA +
Sbjct: 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE-DTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVR---TERGSDVIIVLVGNKTDLV 127
R+ Y+ RQSF ++S +++ + E + +L+GNK D+
Sbjct: 82 PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGF 157
+ RQV+ EG A + +F E SA F
Sbjct: 141 QYRQVTKAEGVALAGRFGCLFFEVSACLDF 170
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+L +G Q GKT+ + +F+ T+G + T V ++LWD GQ R
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPR 88
Query: 71 FRSLIPSYIR 80
FRS+ Y R
Sbjct: 89 FRSMWERYCR 98
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 19 SVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 78
+ GKT+I+ +F + D T T+G + KT LE R +L +WD GQ+ RS +Y
Sbjct: 28 NAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQKSLRSYWRNY 82
Query: 79 IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
RQ + + + + ER + +++ NK DL
Sbjct: 83 FESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
+ P + ++K++ +G + GKT+I+ +F ++ +T TIG S + R
Sbjct: 14 LVPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRF 68
Query: 61 QLWDTAGQERFRSLIPSY 78
+WD GQE RS +Y
Sbjct: 69 LMWDIGGQESLRSSWNTY 86
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++K++ +G + GKT+I+ +F+ ++ +T TIG S + + +WD GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIG----SNVEEIVVKNTHFLMWDIGGQ 70
Query: 69 ERFRSLIPSY 78
E RS +Y
Sbjct: 71 ESLRSSWNTY 80
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNICFTVWDVGGQ 71
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSF------LNTSKWIDEVRTERGSDVIIVLVGN 122
+R R L Y + R+ L +DE+R D +++L N
Sbjct: 72 DRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELR-----DAVLLLFAN 126
Query: 123 KTDLVEKRQVS 133
K DL +S
Sbjct: 127 KQDLPNAMAIS 137
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++K++ +G + GKT+I+ +F ++ +T TIG S + R +WD GQ
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 75
Query: 69 ERFRSLIPSY 78
E RS +Y
Sbjct: 76 ESLRSSWNTY 85
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
R L Y R IDE R E D II++ N
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFAN 109
Query: 123 KTDL---VEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
K DL ++ ++ + G + R+ N + A +G
Sbjct: 110 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 146
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
R L Y R IDE R E D II++ N
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFAN 109
Query: 123 KTDL---VEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
K DL ++ ++ + G + R+ N + A +G
Sbjct: 110 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 146
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 378
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
R L Y R IDE R E D II++ N
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFAN 431
Query: 123 KTDL---VEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
K DL ++ ++ + G + R+ N + A +G
Sbjct: 432 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 468
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 15 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 69
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
R L Y R IDE R E D II++ N
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFAN 122
Query: 123 KTDL---VEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
K DL ++ ++ + G + R+ N + A +G
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 159
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 14 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 68
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
R L Y R IDE R E D II++ N
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFAN 121
Query: 123 KTDL---VEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
K DL ++ ++ + G + R+ N + A +G
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 158
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++K++ +G + GKT+I+ +F ++ +T TIG S + R +WD GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 70
Query: 69 ERFRSLIPSY 78
E RS +Y
Sbjct: 71 ESLRSSWNTY 80
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++K++ +G + GKT+I+ +F ++ +T TIG S + R +WD GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 70
Query: 69 ERFRSLIPSY 78
E RS +Y
Sbjct: 71 ESLRSSWNTY 80
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 16/174 (9%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY----LED----RTV 58
L + K+ +GD GKTS++ + + + FD T G++ ++K LE+ +
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 59 RLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIV 118
WD GQE + S+ ++ N W+ + G +IV
Sbjct: 99 LFHFWDFGGQEIMHA---SHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIV 155
Query: 119 LVGNKTDLVEKRQVSIEEGEAKSR--ELNVMFIETSAKAGFNIKGCSPTIRRLI 170
++ NK D E +IE+ + R + F S K G ++ + +++ +
Sbjct: 156 VM-NKID--ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
R L Y R IDE R E D II++ N
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREXRDAIILIFAN 109
Query: 123 KTDLVE---KRQVSIEEGEAKSRELNVMFIETSAKAG 156
K DL + ++ + G + R+ N + A +G
Sbjct: 110 KQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSG 146
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLVFLG + GKT+++ D+ Q + S+ + + T +D G +
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMT--FTTFDLGGHIQ 78
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEK 129
R + +Y+ + L + + +D + T E ++V I+++GNK D
Sbjct: 79 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID---- 134
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R +I E + RE+ ++ +T+ K ++K
Sbjct: 135 RPEAIS--EERLREMFGLYGQTTGKGSVSLK 163
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLVFLG + GKT+++ K D Q + S+ + + T +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHML---KDDRLGQHVPTLHPTSEELTIAGMT--FTTFDLGGHIQ 81
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEK 129
R + +Y+ + L + + +D + T E ++V I+++GNK D
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID---- 137
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R +I E + RE+ ++ +T+ K ++K
Sbjct: 138 RPEAIS--EERLREMFGLYGQTTGKGSVSLK 166
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLVFLG + GKT+++ D+ Q + S+ + + T +D G E+
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMT--FTTFDLGGHEQ 91
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEK 129
R + +Y+ + + ++ + T E S+V I+++GNK D
Sbjct: 92 ARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKID---- 147
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R +I E K RE+ ++ +T+ K +K
Sbjct: 148 RTDAIS--EEKLREIFGLYGQTTGKGNVTLK 176
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G GKT+++ + + T TIG + + ++ + + +WD GQ+R
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVET----VQYKNISFTVWDVGGQDR 56
Query: 71 FRSLIPSYIR 80
RSL Y R
Sbjct: 57 IRSLWRHYYR 66
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E R + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTTI-PTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDL 126
R L Y R+ + + + + E D II++ NK DL
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G GKT+++ + + T TIG + + ++ + + +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 71 FRSLIPSYIR 80
RSL Y R
Sbjct: 74 IRSLWRHYYR 83
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G GKT+++ + + T TIG + + ++ + + +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 71 FRSLIPSYIR 80
RSL Y R
Sbjct: 74 IRSLWRHYYR 83
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLVFLG + GKT+++ D+ Q + S+ + + T +D G +
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMT--FTTFDLGGGIQ 72
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEK 129
R + +Y+ + L + + +D + T E ++V I+++GNK D
Sbjct: 73 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID---- 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
R +I E + RE+ ++ +T+ K ++K
Sbjct: 129 RPEAIS--EERLREMFGLYGQTTGKGSVSLK 157
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNICFTVWDVGGQ 83
Query: 69 ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
++ R L Y + R+ ++ + ++ E D ++++ NK D+
Sbjct: 84 DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143
Query: 128 EKRQVS 133
VS
Sbjct: 144 NAMPVS 149
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
++ +++ LG + GKT+++ + + + T G + S ++ + +L +WD G
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWDIGG 57
Query: 68 QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV-GNKTDL 126
Q + R SY R+ F T + + E+ E + VL+ NK DL
Sbjct: 58 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
Query: 127 VEKRQVS-IEEG 137
+ S I EG
Sbjct: 118 LTAAPASEIAEG 129
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKTSI+ + + T TIG + + +E + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTSILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 71 FRSLIPSY 78
R L Y
Sbjct: 74 IRPLWRHY 81
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+++ + + + T G + S ++ + +L +WD GQ +
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFNIKS----VQSQGFKLNVWDIGGQRK 72
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV-GNKTDLVEK 129
R SY R+ F T + + E+ E + VL+ NK DL+
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 130 RQVS-IEEG 137
S I EG
Sbjct: 133 APASEIAEG 141
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+++ + + + T G + S ++ + +L +WD GQ +
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFNIKS----VQSQGFKLNVWDIGGQRK 73
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV-GNKTDLVEK 129
R SY R+ F T + + E+ E + VL+ NK DL+
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 130 RQVS-IEEG 137
S I EG
Sbjct: 134 APASEIAEG 142
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG GKT+I+ R + T TIG + + T + ++ Q+WD GQ
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVETVTY----KNLKFQVWDLGGQTS 58
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSF-LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
R Y R ++ S+ + + E I+V+ NK D+
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 115
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 221
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
R L Y + R+ ++E R E D ++++ N
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 274
Query: 123 KTDL---VEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
K DL + +++ + G R N T A +G
Sbjct: 275 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 311
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 56
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI------DEVRTERGSDVIIVLVGNKT 124
R L Y + R+ + + DE+R D ++++ NK
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANKQ 111
Query: 125 DL---VEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
DL + +++ + G R N T A +G
Sbjct: 112 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 146
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ++
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 72
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
R L Y + R+ ++E R E D ++++ N
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 125
Query: 123 KTDL---VEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
K DL + +++ + G R N T A +G
Sbjct: 126 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 162
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
R L Y + R+ ++E R E D ++++ N
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 126
Query: 123 KTDL---VEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
K DL + +++ + G R N T A +G
Sbjct: 127 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 163
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + +++ +G + GKT+I+ + + T TIG + + +E + + +WD
Sbjct: 17 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDV 71
Query: 66 AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKT 124
GQ++ R L Y + R + + + E D ++++ NK
Sbjct: 72 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 131
Query: 125 DL 126
DL
Sbjct: 132 DL 133
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG GKT+I+ R + T + TIG + + L + ++L +WD GQ
Sbjct: 20 RILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVET----LSYKNLKLNVWDLGGQTS 74
Query: 71 FRSLIPSY 78
R Y
Sbjct: 75 IRPYWRCY 82
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G GKT+++ + + T TIG + + Y + +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFN-VECVQYC---NISFTVWDVGGQDR 73
Query: 71 FRSLIPSY 78
RSL Y
Sbjct: 74 IRSLWRHY 81
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 20/123 (16%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KL+FLG + GKT+++ D+ AT+ + + L ++ +D G +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 57
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS--------DVIIVLVGN 122
R L Y + F DE R E + DV V++GN
Sbjct: 58 ARRLWKDYFPEVNGIVFLVDAADPERF-------DEARVELDALFNIAELKDVPFVILGN 110
Query: 123 KTD 125
K D
Sbjct: 111 KID 113
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
++ +++ LG + GKT+++ + + + T G + S ++ + +L +WD G
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWDIGG 57
Query: 68 QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV-GNKTDL 126
+ R SY R+ F T + + E+ E + VL+ NK DL
Sbjct: 58 LRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
Query: 127 VEKRQVS-IEEG 137
+ S I EG
Sbjct: 118 LTAAPASEIAEG 129
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 20/123 (16%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KL+FLG + GKT+++ D+ AT+ + + L ++ +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79
Query: 71 FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS--------DVIIVLVGN 122
R L Y + F DE R E + DV V++GN
Sbjct: 80 ARRLWKDYFPEVNGIVFLVDAADPERF-------DEARVELDALFNIAELKDVPFVILGN 132
Query: 123 KTD 125
K D
Sbjct: 133 KID 135
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
I+LV NK DL++K+ I+ + + +EL V I T+AK G
Sbjct: 112 IILVLNKFDLLKKKGAKIDIKKMR-KELGVPVIPTNAKKG 150
>pdb|2AW6|A Chain A, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2AW6|B Chain B, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2GRL|A Chain A, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|B Chain B, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|C Chain C, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|D Chain D, Crystal Structure Of DctICF10 COMPLEX
Length = 317
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165
+ R +S+EE S L V F E +AG N K + T
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGMNTKSVNET 75
>pdb|2AXV|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AXV|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AXV|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AXV|D Chain D, Structure Of Prgx Y153c Mutant
Length = 317
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165
+ R +S+EE S L V F E +AG N K + T
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGMNTKSVNET 75
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165
+ R +S+EE S L V F E +AG N K + T
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGMNTKSVNET 75
>pdb|4AU9|A Chain A, Crystal Structure Of A Fungal Dyp-type Peroxidase From
Auricularia Auricula-judae
pdb|4AU9|B Chain B, Crystal Structure Of A Fungal Dyp-type Peroxidase From
Auricularia Auricula-judae
Length = 448
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 99 NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE 136
+TS W+ + G +I+L + TDL++++ SIE
Sbjct: 101 STSSWVPQF-AGTGIHGVIILASDTTDLIDQQVASIES 137
>pdb|2AXU|A Chain A, Structure Of Prgx
pdb|2AXU|B Chain B, Structure Of Prgx
pdb|2AXU|C Chain C, Structure Of Prgx
pdb|2AXU|D Chain D, Structure Of Prgx
pdb|2AXU|E Chain E, Structure Of Prgx
pdb|2AXU|F Chain F, Structure Of Prgx
pdb|2AXU|G Chain G, Structure Of Prgx
pdb|2AXU|H Chain H, Structure Of Prgx
pdb|2AXU|I Chain I, Structure Of Prgx
pdb|2AXU|J Chain J, Structure Of Prgx
pdb|2AXU|K Chain K, Structure Of Prgx
pdb|2AXU|L Chain L, Structure Of Prgx
Length = 317
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165
+ R +S+EE S L V F E +AG N K + T
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGXNTKSVNET 75
>pdb|2AXZ|A Chain A, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|B Chain B, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|C Chain C, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|D Chain D, Crystal Structure Of PrgxCCF10 COMPLEX
Length = 317
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165
+ R +S+EE S L V F E +AG N K + T
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGXNTKSVNET 75
>pdb|2AWI|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AWI|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AWI|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AWI|D Chain D, Structure Of Prgx Y153c Mutant
pdb|2AWI|E Chain E, Structure Of Prgx Y153c Mutant
pdb|2AWI|F Chain F, Structure Of Prgx Y153c Mutant
pdb|2AWI|G Chain G, Structure Of Prgx Y153c Mutant
pdb|2AWI|H Chain H, Structure Of Prgx Y153c Mutant
pdb|2AWI|I Chain I, Structure Of Prgx Y153c Mutant
pdb|2AWI|J Chain J, Structure Of Prgx Y153c Mutant
pdb|2AWI|K Chain K, Structure Of Prgx Y153c Mutant
pdb|2AWI|L Chain L, Structure Of Prgx Y153c Mutant
Length = 317
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165
+ R +S+EE S L V F E +AG N K + T
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGXNTKSVNET 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,016,815
Number of Sequences: 62578
Number of extensions: 132020
Number of successful extensions: 992
Number of sequences better than 100.0: 347
Number of HSP's better than 100.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 349
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)