Query 030856
Match_columns 170
No_of_seqs 151 out of 1673
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 05:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 8.4E-46 1.8E-50 236.2 18.4 165 5-169 5-170 (205)
2 KOG0078 GTP-binding protein SE 100.0 2.1E-43 4.5E-48 228.2 19.8 166 4-169 7-172 (207)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 8.4E-43 1.8E-47 221.7 17.8 164 7-170 3-166 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.8E-42 3.8E-47 220.5 18.6 165 6-170 19-184 (221)
5 KOG0098 GTPase Rab2, small G p 100.0 2.5E-42 5.5E-47 218.1 17.3 164 6-169 3-166 (216)
6 KOG0080 GTPase Rab18, small G 100.0 8.6E-42 1.9E-46 210.9 16.4 164 7-170 9-173 (209)
7 cd04121 Rab40 Rab40 subfamily. 100.0 8.4E-41 1.8E-45 221.4 21.5 162 7-169 4-165 (189)
8 cd04120 Rab12 Rab12 subfamily. 100.0 7.2E-41 1.6E-45 223.6 21.2 160 10-169 1-161 (202)
9 cd04122 Rab14 Rab14 subfamily. 100.0 2.3E-39 5.1E-44 211.5 21.6 161 9-169 2-162 (166)
10 cd04117 Rab15 Rab15 subfamily. 100.0 5.4E-39 1.2E-43 208.8 22.0 161 10-170 1-161 (161)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.6E-39 1E-43 212.2 20.8 161 7-169 3-178 (182)
12 cd04133 Rop_like Rop subfamily 100.0 3.8E-39 8.2E-44 211.4 19.8 158 10-169 2-171 (176)
13 KOG0093 GTPase Rab3, small G p 100.0 1.1E-39 2.5E-44 198.7 14.8 163 8-170 20-182 (193)
14 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 9.6E-39 2.1E-43 209.5 20.3 160 9-169 2-162 (172)
15 cd01867 Rab8_Rab10_Rab13_like 100.0 2E-38 4.2E-43 207.4 21.5 163 8-170 2-164 (167)
16 cd01865 Rab3 Rab3 subfamily. 100.0 2.3E-38 5E-43 206.6 21.7 160 10-169 2-161 (165)
17 KOG0394 Ras-related GTPase [Ge 100.0 2.3E-39 5.1E-44 204.3 16.0 169 1-169 1-176 (210)
18 KOG0079 GTP-binding protein H- 100.0 1.1E-39 2.3E-44 199.1 13.8 160 9-169 8-167 (198)
19 cd04131 Rnd Rnd subfamily. Th 100.0 1.6E-38 3.5E-43 209.1 20.3 158 9-168 1-173 (178)
20 cd01875 RhoG RhoG subfamily. 100.0 2.3E-38 4.9E-43 210.9 21.0 160 8-169 2-175 (191)
21 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.7E-38 8E-43 205.8 21.2 161 9-169 2-162 (166)
22 PF00071 Ras: Ras family; Int 100.0 2.9E-38 6.3E-43 205.6 20.6 160 11-170 1-160 (162)
23 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.3E-38 7.1E-43 211.9 21.3 160 10-169 1-166 (201)
24 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.9E-38 8.5E-43 213.7 21.1 162 6-169 10-186 (232)
25 cd04119 RJL RJL (RabJ-Like) su 100.0 6.3E-38 1.4E-42 204.9 21.4 161 10-170 1-166 (168)
26 KOG0087 GTPase Rab11/YPT3, sma 100.0 8.4E-39 1.8E-43 206.2 16.8 164 6-169 11-174 (222)
27 cd04127 Rab27A Rab27a subfamil 100.0 5.4E-38 1.2E-42 207.6 21.1 162 8-169 3-175 (180)
28 KOG0086 GTPase Rab4, small G p 100.0 7.9E-39 1.7E-43 196.4 15.4 163 7-169 7-169 (214)
29 cd01864 Rab19 Rab19 subfamily. 100.0 1.4E-37 3.1E-42 202.9 22.3 163 8-170 2-165 (165)
30 cd01868 Rab11_like Rab11-like. 100.0 1.6E-37 3.5E-42 202.7 22.0 162 9-170 3-164 (165)
31 PLN03110 Rab GTPase; Provision 100.0 1.5E-37 3.3E-42 210.5 22.3 164 6-169 9-172 (216)
32 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.2E-38 1.6E-42 206.8 20.2 159 10-169 1-164 (182)
33 cd04136 Rap_like Rap-like subf 100.0 8.2E-38 1.8E-42 203.6 20.1 161 9-170 1-162 (163)
34 cd04113 Rab4 Rab4 subfamily. 100.0 2.2E-37 4.9E-42 201.2 21.8 161 10-170 1-161 (161)
35 cd01866 Rab2 Rab2 subfamily. 100.0 2.2E-37 4.7E-42 202.6 21.7 161 9-169 4-164 (168)
36 cd04125 RabA_like RabA-like su 100.0 2.5E-37 5.5E-42 205.7 21.7 160 10-169 1-160 (188)
37 cd04109 Rab28 Rab28 subfamily. 100.0 2.1E-37 4.6E-42 209.8 21.5 160 10-169 1-164 (215)
38 cd04175 Rap1 Rap1 subgroup. T 100.0 1.5E-37 3.3E-42 202.6 20.0 161 9-170 1-162 (164)
39 KOG0095 GTPase Rab30, small G 100.0 1.5E-38 3.2E-43 194.6 14.1 161 9-169 7-167 (213)
40 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.4E-37 5.1E-42 203.4 20.2 158 10-169 2-173 (175)
41 cd04106 Rab23_lke Rab23-like s 100.0 4.9E-37 1.1E-41 199.8 21.4 159 10-169 1-161 (162)
42 PTZ00369 Ras-like protein; Pro 100.0 3.3E-37 7.2E-42 205.2 20.5 162 7-169 3-165 (189)
43 cd04110 Rab35 Rab35 subfamily. 100.0 5.4E-37 1.2E-41 205.6 21.4 161 8-169 5-165 (199)
44 cd01861 Rab6 Rab6 subfamily. 100.0 9.4E-37 2E-41 198.2 21.9 161 10-170 1-161 (161)
45 PLN03071 GTP-binding nuclear p 100.0 4.2E-37 9.1E-42 208.5 20.7 160 7-169 11-170 (219)
46 cd04111 Rab39 Rab39 subfamily. 100.0 6.2E-37 1.3E-41 206.7 21.3 161 9-169 2-164 (211)
47 cd04176 Rap2 Rap2 subgroup. T 100.0 5.3E-37 1.2E-41 199.8 20.2 161 9-170 1-162 (163)
48 smart00175 RAB Rab subfamily o 100.0 1.1E-36 2.3E-41 198.4 21.5 161 10-170 1-161 (164)
49 cd04112 Rab26 Rab26 subfamily. 100.0 6.5E-37 1.4E-41 204.1 20.7 160 10-169 1-161 (191)
50 cd04116 Rab9 Rab9 subfamily. 100.0 2E-36 4.4E-41 198.4 22.4 163 7-170 3-170 (170)
51 PLN03108 Rab family protein; P 100.0 1.3E-36 2.9E-41 205.1 21.9 163 7-169 4-166 (210)
52 cd01871 Rac1_like Rac1-like su 100.0 1E-36 2.2E-41 200.3 20.6 160 9-170 1-174 (174)
53 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.6E-36 3.5E-41 198.6 21.4 159 11-169 2-163 (170)
54 cd04144 Ras2 Ras2 subfamily. 100.0 5E-37 1.1E-41 204.5 19.1 158 11-169 1-161 (190)
55 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.7E-36 3.6E-41 198.7 21.2 162 9-170 2-168 (170)
56 cd04140 ARHI_like ARHI subfami 100.0 1.5E-36 3.2E-41 198.1 20.4 159 10-169 2-163 (165)
57 cd01860 Rab5_related Rab5-rela 100.0 3.6E-36 7.7E-41 195.9 22.0 162 9-170 1-162 (163)
58 cd00877 Ran Ran (Ras-related n 100.0 1.5E-36 3.3E-41 198.1 20.2 157 10-169 1-157 (166)
59 cd04126 Rab20 Rab20 subfamily. 100.0 1.4E-36 3E-41 205.1 20.0 155 10-169 1-188 (220)
60 KOG0091 GTPase Rab39, small G 100.0 1.3E-37 2.7E-42 193.0 13.6 163 8-170 7-172 (213)
61 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.5E-36 7.5E-41 196.1 20.7 161 9-170 2-163 (164)
62 smart00173 RAS Ras subfamily o 100.0 2.3E-36 4.9E-41 197.0 19.8 160 10-170 1-161 (164)
63 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.5E-36 9.7E-41 195.1 20.5 160 9-170 1-161 (162)
64 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.2E-36 9.1E-41 202.9 20.7 158 9-168 1-173 (222)
65 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-35 2.8E-40 193.4 21.5 159 10-169 1-162 (164)
66 cd04134 Rho3 Rho3 subfamily. 100.0 5.3E-36 1.2E-40 199.3 19.4 158 10-169 1-172 (189)
67 cd04142 RRP22 RRP22 subfamily. 100.0 6.8E-36 1.5E-40 199.6 19.7 160 10-169 1-172 (198)
68 cd04123 Rab21 Rab21 subfamily. 100.0 2.5E-35 5.5E-40 191.5 21.7 161 10-170 1-161 (162)
69 cd04124 RabL2 RabL2 subfamily. 100.0 1.5E-35 3.2E-40 192.6 20.5 156 10-169 1-156 (161)
70 smart00176 RAN Ran (Ras-relate 100.0 1.3E-35 2.8E-40 198.0 19.8 152 15-169 1-152 (200)
71 smart00174 RHO Rho (Ras homolo 100.0 1.6E-35 3.5E-40 194.7 19.2 156 12-169 1-170 (174)
72 cd04132 Rho4_like Rho4-like su 100.0 2.4E-35 5.1E-40 196.1 20.0 158 10-169 1-165 (187)
73 cd01863 Rab18 Rab18 subfamily. 100.0 6.4E-35 1.4E-39 189.6 21.5 160 10-170 1-161 (161)
74 cd01873 RhoBTB RhoBTB subfamil 100.0 2.4E-35 5.3E-40 196.3 19.8 158 9-169 2-194 (195)
75 cd04114 Rab30 Rab30 subfamily. 100.0 1.3E-34 2.7E-39 189.7 22.7 164 7-170 5-168 (169)
76 cd04118 Rab24 Rab24 subfamily. 100.0 5.6E-35 1.2E-39 195.2 20.9 159 10-169 1-164 (193)
77 cd04103 Centaurin_gamma Centau 100.0 3.8E-35 8.2E-40 189.8 19.4 154 10-170 1-158 (158)
78 KOG0088 GTPase Rab21, small G 100.0 4.6E-37 1E-41 189.7 9.6 164 6-169 10-173 (218)
79 PLN03118 Rab family protein; P 100.0 1E-34 2.2E-39 196.2 21.9 163 6-169 11-175 (211)
80 cd04143 Rhes_like Rhes_like su 100.0 5.5E-35 1.2E-39 200.8 20.3 159 10-169 1-169 (247)
81 cd04177 RSR1 RSR1 subgroup. R 100.0 9.4E-35 2E-39 190.1 20.2 160 9-169 1-162 (168)
82 cd01862 Rab7 Rab7 subfamily. 100.0 1.7E-34 3.8E-39 189.4 21.3 160 10-169 1-165 (172)
83 cd04146 RERG_RasL11_like RERG/ 100.0 4.1E-35 9E-40 191.3 17.8 159 11-170 1-163 (165)
84 cd00154 Rab Rab family. Rab G 100.0 2.9E-34 6.3E-39 185.7 21.2 159 10-168 1-159 (159)
85 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.5E-34 3.2E-39 190.0 19.8 157 10-168 1-171 (173)
86 cd01892 Miro2 Miro2 subfamily. 100.0 7.3E-35 1.6E-39 190.7 17.7 161 7-169 2-164 (169)
87 cd04135 Tc10 TC10 subfamily. 100.0 1.8E-34 3.8E-39 189.8 19.6 159 10-170 1-173 (174)
88 cd04148 RGK RGK subfamily. Th 100.0 1.9E-34 4.1E-39 195.8 19.7 158 10-169 1-161 (221)
89 KOG0083 GTPase Rab26/Rab37, sm 100.0 5.8E-37 1.3E-41 184.3 5.7 157 13-169 1-158 (192)
90 KOG0097 GTPase Rab14, small G 100.0 1.6E-34 3.5E-39 175.6 15.1 165 5-169 7-171 (215)
91 cd00876 Ras Ras family. The R 100.0 1.4E-33 3.1E-38 182.9 20.1 159 11-170 1-160 (160)
92 cd04139 RalA_RalB RalA/RalB su 100.0 1.4E-33 3E-38 183.7 20.1 159 10-169 1-160 (164)
93 KOG0081 GTPase Rab27, small G 100.0 8.9E-36 1.9E-40 184.1 7.9 162 8-169 8-179 (219)
94 cd04149 Arf6 Arf6 subfamily. 100.0 2.4E-33 5.3E-38 183.3 17.9 155 7-168 7-167 (168)
95 KOG0395 Ras-related GTPase [Ge 100.0 1.6E-33 3.4E-38 186.7 16.8 161 8-169 2-163 (196)
96 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.8E-34 8.1E-39 186.4 13.4 152 12-168 2-163 (164)
97 cd01870 RhoA_like RhoA-like su 100.0 1E-32 2.3E-37 181.5 19.9 159 9-169 1-173 (175)
98 smart00177 ARF ARF-like small 100.0 1.3E-33 2.8E-38 185.7 15.2 156 7-169 11-172 (175)
99 PTZ00132 GTP-binding nuclear p 100.0 2.7E-32 5.9E-37 185.0 21.9 167 1-170 1-167 (215)
100 cd00157 Rho Rho (Ras homology) 100.0 2E-32 4.4E-37 179.5 19.6 158 10-169 1-171 (171)
101 cd04137 RheB Rheb (Ras Homolog 100.0 2.1E-32 4.5E-37 180.9 19.8 159 10-169 2-161 (180)
102 cd04147 Ras_dva Ras-dva subfam 100.0 2.1E-32 4.4E-37 183.4 19.6 158 11-169 1-161 (198)
103 PLN00223 ADP-ribosylation fact 100.0 1.1E-32 2.4E-37 182.1 18.0 157 7-170 15-177 (181)
104 cd04129 Rho2 Rho2 subfamily. 100.0 2E-32 4.3E-37 181.9 19.4 159 9-169 1-171 (187)
105 cd04158 ARD1 ARD1 subfamily. 100.0 6.2E-33 1.3E-37 181.6 16.6 153 11-170 1-160 (169)
106 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.6E-33 5.6E-38 181.7 14.4 153 10-168 1-158 (159)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.6E-32 3.4E-37 181.8 17.3 159 8-169 2-168 (183)
108 cd04154 Arl2 Arl2 subfamily. 100.0 2.6E-32 5.6E-37 179.4 17.8 156 6-168 11-172 (173)
109 PTZ00133 ADP-ribosylation fact 100.0 7.8E-33 1.7E-37 183.0 14.5 156 7-169 15-176 (182)
110 cd04102 RabL3 RabL3 (Rab-like3 100.0 1E-31 2.2E-36 179.3 19.1 149 10-158 1-177 (202)
111 cd01893 Miro1 Miro1 subfamily. 100.0 2.6E-31 5.6E-36 173.5 18.6 157 10-169 1-162 (166)
112 cd04161 Arl2l1_Arl13_like Arl2 100.0 6E-32 1.3E-36 176.6 14.8 153 11-168 1-166 (167)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.3E-31 7.2E-36 174.2 17.8 154 8-168 14-173 (174)
114 cd04157 Arl6 Arl6 subfamily. 100.0 9.7E-32 2.1E-36 174.8 14.6 152 11-168 1-161 (162)
115 KOG0393 Ras-related small GTPa 100.0 3E-32 6.6E-37 177.1 11.6 160 7-168 2-176 (198)
116 cd00879 Sar1 Sar1 subfamily. 100.0 1.2E-30 2.7E-35 173.8 18.0 157 7-170 17-190 (190)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 5.7E-31 1.2E-35 170.9 15.7 152 11-168 1-159 (160)
118 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.1E-30 2.3E-35 170.7 16.5 153 11-169 1-167 (167)
119 cd04151 Arl1 Arl1 subfamily. 100.0 4.8E-31 1E-35 170.9 13.6 151 11-168 1-157 (158)
120 PF00025 Arf: ADP-ribosylation 100.0 2.5E-30 5.3E-35 169.9 16.6 158 6-170 11-175 (175)
121 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.5E-30 3.3E-35 168.6 15.3 151 11-168 1-157 (158)
122 PTZ00099 rab6; Provisional 100.0 8.5E-30 1.9E-34 167.2 18.2 138 32-169 3-140 (176)
123 PLN00023 GTP-binding protein; 100.0 7.1E-30 1.5E-34 178.3 18.4 142 5-146 17-189 (334)
124 KOG4252 GTP-binding protein [S 100.0 1.1E-32 2.4E-37 173.7 3.6 168 1-169 12-179 (246)
125 smart00178 SAR Sar1p-like memb 100.0 1.9E-29 4.1E-34 167.2 18.0 157 7-170 15-184 (184)
126 cd04159 Arl10_like Arl10-like 100.0 4.4E-29 9.6E-34 161.4 16.4 151 12-168 2-158 (159)
127 KOG0073 GTP-binding ADP-ribosy 100.0 8.1E-29 1.7E-33 153.9 16.1 159 6-169 13-176 (185)
128 cd01890 LepA LepA subfamily. 100.0 1.6E-28 3.4E-33 162.2 17.2 154 11-170 2-176 (179)
129 cd01897 NOG NOG1 is a nucleola 100.0 1.3E-28 2.9E-33 161.0 16.3 156 10-170 1-167 (168)
130 cd01898 Obg Obg subfamily. Th 100.0 1.1E-28 2.5E-33 161.5 15.9 158 11-170 2-170 (170)
131 TIGR00231 small_GTP small GTP- 100.0 1E-27 2.2E-32 154.8 18.5 158 9-167 1-160 (161)
132 cd04155 Arl3 Arl3 subfamily. 100.0 8.7E-28 1.9E-32 157.8 18.3 157 6-169 11-173 (173)
133 cd01878 HflX HflX subfamily. 100.0 4.3E-28 9.3E-33 163.2 16.4 157 7-170 39-204 (204)
134 PRK12299 obgE GTPase CgtA; Rev 100.0 6.7E-28 1.4E-32 171.7 17.7 159 10-169 159-326 (335)
135 cd04171 SelB SelB subfamily. 100.0 1.5E-27 3.3E-32 155.2 16.5 152 10-168 1-163 (164)
136 PRK04213 GTP-binding protein; 100.0 3.9E-28 8.4E-33 163.1 12.9 157 1-170 1-191 (201)
137 TIGR02528 EutP ethanolamine ut 100.0 7.1E-28 1.5E-32 153.5 13.3 134 11-167 2-141 (142)
138 KOG0070 GTP-binding ADP-ribosy 100.0 3.1E-28 6.8E-33 154.8 11.5 160 6-170 14-177 (181)
139 COG1100 GTPase SAR1 and relate 100.0 1.3E-26 2.8E-31 157.6 19.4 162 8-169 4-183 (219)
140 cd00882 Ras_like_GTPase Ras-li 100.0 1.3E-26 2.8E-31 148.5 17.8 154 14-168 1-157 (157)
141 KOG3883 Ras family small GTPas 100.0 1E-26 2.3E-31 143.1 15.7 162 8-169 8-173 (198)
142 PF02421 FeoB_N: Ferrous iron 100.0 2E-27 4.4E-32 151.0 11.4 148 10-166 1-156 (156)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.8E-26 6.2E-31 149.9 15.7 155 11-169 2-164 (168)
144 TIGR02729 Obg_CgtA Obg family 99.9 3.1E-26 6.8E-31 163.0 17.1 159 10-170 158-328 (329)
145 TIGR03156 GTP_HflX GTP-binding 99.9 2.4E-26 5.1E-31 165.0 16.4 154 9-170 189-351 (351)
146 cd01879 FeoB Ferrous iron tran 99.9 3.7E-26 8.1E-31 147.8 15.6 147 14-169 1-155 (158)
147 cd01891 TypA_BipA TypA (tyrosi 99.9 4.8E-26 1E-30 152.1 14.8 147 10-160 3-171 (194)
148 cd01881 Obg_like The Obg-like 99.9 4.6E-26 9.9E-31 149.9 14.0 156 14-170 1-176 (176)
149 KOG0075 GTP-binding ADP-ribosy 99.9 3.9E-27 8.5E-32 143.9 7.4 152 9-169 20-180 (186)
150 KOG1673 Ras GTPases [General f 99.9 2.2E-26 4.7E-31 142.0 10.2 163 5-168 16-183 (205)
151 TIGR00436 era GTP-binding prot 99.9 2.6E-25 5.7E-30 155.3 16.6 152 11-170 2-163 (270)
152 PRK15494 era GTPase Era; Provi 99.9 5E-25 1.1E-29 157.9 17.9 155 6-170 49-215 (339)
153 PF08477 Miro: Miro-like prote 99.9 1.6E-25 3.5E-30 138.5 12.8 114 11-125 1-119 (119)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5.4E-25 1.2E-29 162.1 17.3 148 8-169 202-358 (442)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.9 6.8E-25 1.5E-29 141.7 15.8 145 10-169 2-155 (157)
156 cd01889 SelB_euk SelB subfamil 99.9 3.4E-25 7.5E-30 147.8 14.5 157 10-170 1-185 (192)
157 cd00881 GTP_translation_factor 99.9 6.8E-25 1.5E-29 145.8 15.5 154 11-170 1-186 (189)
158 KOG0071 GTP-binding ADP-ribosy 99.9 2.4E-25 5.2E-30 135.2 11.8 156 7-169 15-176 (180)
159 PRK05291 trmE tRNA modificatio 99.9 3.6E-25 7.9E-30 163.8 15.3 146 8-169 214-368 (449)
160 PRK15467 ethanolamine utilizat 99.9 5.5E-25 1.2E-29 142.3 13.9 137 11-169 3-145 (158)
161 PRK03003 GTP-binding protein D 99.9 2.5E-24 5.3E-29 160.7 18.2 153 8-170 37-198 (472)
162 PRK03003 GTP-binding protein D 99.9 8.8E-25 1.9E-29 163.1 15.8 156 8-169 210-380 (472)
163 PRK11058 GTPase HflX; Provisio 99.9 1.5E-24 3.2E-29 159.0 16.3 154 10-169 198-360 (426)
164 cd01894 EngA1 EngA1 subfamily. 99.9 1.4E-24 3.1E-29 140.2 14.5 147 13-170 1-157 (157)
165 PRK12297 obgE GTPase CgtA; Rev 99.9 3.8E-24 8.2E-29 156.1 18.2 154 11-169 160-325 (424)
166 TIGR01393 lepA GTP-binding pro 99.9 3.2E-24 6.9E-29 163.0 18.2 156 9-170 3-179 (595)
167 PRK00454 engB GTP-binding prot 99.9 5.2E-24 1.1E-28 142.5 16.7 162 2-170 17-193 (196)
168 TIGR00487 IF-2 translation ini 99.9 6.5E-24 1.4E-28 160.7 18.2 154 7-168 85-247 (587)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 4.3E-24 9.4E-29 143.5 15.3 159 10-170 1-198 (203)
170 cd04105 SR_beta Signal recogni 99.9 1E-23 2.3E-28 141.5 16.7 157 11-168 2-202 (203)
171 PRK12296 obgE GTPase CgtA; Rev 99.9 5.4E-24 1.2E-28 157.2 16.4 157 10-169 160-338 (500)
172 PRK12298 obgE GTPase CgtA; Rev 99.9 9.1E-24 2E-28 153.3 17.3 158 11-170 161-332 (390)
173 cd04163 Era Era subfamily. Er 99.9 1.6E-23 3.4E-28 136.4 16.2 157 8-170 2-168 (168)
174 PRK00089 era GTPase Era; Revie 99.9 1.8E-23 3.9E-28 147.8 17.0 157 8-170 4-170 (292)
175 TIGR03598 GTPase_YsxC ribosome 99.9 1.4E-23 3E-28 138.5 14.9 150 4-160 13-179 (179)
176 TIGR03594 GTPase_EngA ribosome 99.9 3.9E-23 8.5E-28 153.3 18.4 155 7-168 170-341 (429)
177 cd01895 EngA2 EngA2 subfamily. 99.9 5.5E-23 1.2E-27 134.7 17.1 155 9-169 2-173 (174)
178 KOG0076 GTP-binding ADP-ribosy 99.9 1.3E-24 2.9E-29 136.5 8.8 159 7-169 15-185 (197)
179 TIGR00475 selB selenocysteine- 99.9 1.9E-23 4.2E-28 158.6 16.7 151 10-169 1-164 (581)
180 CHL00189 infB translation init 99.9 3.6E-23 7.8E-28 159.0 17.5 155 7-168 242-407 (742)
181 TIGR00437 feoB ferrous iron tr 99.9 1.8E-23 4E-28 158.9 15.7 145 16-169 1-153 (591)
182 COG1159 Era GTPase [General fu 99.9 4.6E-23 1E-27 140.9 15.5 159 6-170 3-171 (298)
183 PRK05306 infB translation init 99.9 7E-23 1.5E-27 158.6 18.1 154 6-168 287-449 (787)
184 PF00009 GTP_EFTU: Elongation 99.9 1.5E-23 3.2E-28 139.4 11.9 159 8-170 2-186 (188)
185 PRK09554 feoB ferrous iron tra 99.9 1.2E-22 2.6E-27 157.9 18.6 152 8-168 2-165 (772)
186 PRK05433 GTP-binding protein L 99.9 9.9E-23 2.2E-27 155.1 17.6 157 8-170 6-183 (600)
187 PRK00093 GTP-binding protein D 99.9 1.2E-22 2.5E-27 150.9 16.8 146 10-168 2-159 (435)
188 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.5E-23 3.1E-28 133.6 9.8 162 6-170 7-168 (216)
189 cd00880 Era_like Era (E. coli 99.9 9.3E-23 2E-27 131.7 13.7 152 14-170 1-163 (163)
190 TIGR03594 GTPase_EngA ribosome 99.9 2.6E-22 5.6E-27 148.9 16.6 149 11-170 1-159 (429)
191 KOG0074 GTP-binding ADP-ribosy 99.9 1.6E-22 3.4E-27 123.2 10.7 160 5-168 13-176 (185)
192 COG0486 ThdF Predicted GTPase 99.9 6E-22 1.3E-26 142.7 15.3 150 8-169 216-374 (454)
193 cd01896 DRG The developmentall 99.9 1.8E-21 4E-26 133.0 16.7 151 11-170 2-225 (233)
194 COG1160 Predicted GTPases [Gen 99.9 6.1E-22 1.3E-26 142.3 14.7 149 10-169 4-163 (444)
195 PRK00093 GTP-binding protein D 99.9 1.3E-21 2.7E-26 145.4 16.6 155 7-168 171-341 (435)
196 TIGR00491 aIF-2 translation in 99.9 1.4E-21 3E-26 147.9 16.7 154 8-168 3-213 (590)
197 COG2229 Predicted GTPase [Gene 99.9 5.4E-21 1.2E-25 121.8 16.5 157 4-168 5-175 (187)
198 PRK09518 bifunctional cytidyla 99.9 2.7E-21 5.8E-26 150.6 18.4 153 7-170 273-435 (712)
199 PRK09518 bifunctional cytidyla 99.9 1.5E-21 3.2E-26 151.9 17.0 154 8-169 449-619 (712)
200 PRK12317 elongation factor 1-a 99.9 7.4E-22 1.6E-26 146.0 14.6 154 5-161 2-195 (425)
201 TIGR00483 EF-1_alpha translati 99.9 1.4E-21 3.1E-26 144.5 15.2 153 6-161 4-197 (426)
202 KOG0072 GTP-binding ADP-ribosy 99.9 5.8E-23 1.3E-27 125.4 6.3 157 7-169 16-177 (182)
203 TIGR03680 eif2g_arch translati 99.9 1.9E-21 4.1E-26 142.8 15.0 161 7-169 2-194 (406)
204 PF10662 PduV-EutP: Ethanolami 99.9 2.7E-21 5.8E-26 120.5 13.3 136 11-168 3-143 (143)
205 cd01876 YihA_EngB The YihA (En 99.9 5E-21 1.1E-25 124.8 15.2 151 11-170 1-170 (170)
206 KOG1707 Predicted Ras related/ 99.9 4E-22 8.7E-27 146.1 10.7 168 1-170 1-174 (625)
207 PRK04000 translation initiatio 99.9 4.7E-21 1E-25 140.6 15.5 162 5-169 5-199 (411)
208 TIGR01394 TypA_BipA GTP-bindin 99.9 3.6E-21 7.9E-26 146.2 15.2 157 10-170 2-190 (594)
209 PRK10218 GTP-binding protein; 99.9 1.3E-20 2.8E-25 143.1 18.1 159 8-170 4-194 (607)
210 KOG4423 GTP-binding protein-li 99.9 2E-24 4.3E-29 137.2 -3.2 162 8-169 24-192 (229)
211 cd01884 EF_Tu EF-Tu subfamily. 99.9 2.6E-20 5.6E-25 124.0 16.2 146 8-159 1-171 (195)
212 cd04166 CysN_ATPS CysN_ATPS su 99.9 9E-21 2E-25 127.9 13.9 146 11-161 1-184 (208)
213 PRK04004 translation initiatio 99.9 2.9E-20 6.4E-25 141.2 17.1 154 7-167 4-214 (586)
214 PRK10512 selenocysteinyl-tRNA- 99.9 3.3E-20 7.1E-25 141.6 17.0 154 11-169 2-164 (614)
215 cd04168 TetM_like Tet(M)-like 99.9 2.2E-20 4.8E-25 127.9 14.1 114 11-128 1-130 (237)
216 COG0370 FeoB Fe2+ transport sy 99.9 2.8E-20 6E-25 139.4 15.7 152 8-168 2-161 (653)
217 cd04167 Snu114p Snu114p subfam 99.9 2E-20 4.4E-25 126.6 13.7 155 11-169 2-209 (213)
218 COG1160 Predicted GTPases [Gen 99.9 7.5E-20 1.6E-24 131.7 15.9 155 8-168 177-348 (444)
219 cd01883 EF1_alpha Eukaryotic e 99.9 3.2E-20 6.9E-25 126.1 13.0 146 11-160 1-194 (219)
220 COG0218 Predicted GTPase [Gene 99.8 1.5E-19 3.3E-24 117.6 15.0 160 3-169 18-195 (200)
221 KOG1423 Ras-like GTPase ERA [C 99.8 1.1E-19 2.4E-24 124.4 14.9 160 6-169 69-269 (379)
222 KOG1489 Predicted GTP-binding 99.8 1.1E-19 2.4E-24 124.9 13.9 156 10-169 197-365 (366)
223 PRK12736 elongation factor Tu; 99.8 3.3E-19 7.2E-24 130.5 16.2 158 6-169 9-199 (394)
224 PRK12735 elongation factor Tu; 99.8 4.8E-19 1E-23 129.8 16.1 157 6-168 9-200 (396)
225 COG2262 HflX GTPases [General 99.8 6.2E-19 1.3E-23 125.3 15.5 156 8-170 191-355 (411)
226 TIGR00485 EF-Tu translation el 99.8 4.9E-19 1.1E-23 129.8 15.4 146 6-157 9-179 (394)
227 cd01885 EF2 EF2 (for archaea a 99.8 3.8E-19 8.3E-24 120.3 13.7 114 10-127 1-138 (222)
228 cd04104 p47_IIGP_like p47 (47- 99.8 6.1E-19 1.3E-23 118.0 13.7 154 9-170 1-183 (197)
229 COG1084 Predicted GTPase [Gene 99.8 1.7E-18 3.6E-23 119.9 15.3 156 7-168 166-333 (346)
230 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 6.1E-19 1.3E-23 119.4 13.0 155 11-170 1-175 (232)
231 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.3E-18 5.1E-23 116.9 15.5 154 11-168 1-220 (224)
232 cd01850 CDC_Septin CDC/Septin. 99.8 2E-18 4.4E-23 120.6 14.7 143 8-155 3-186 (276)
233 cd04169 RF3 RF3 subfamily. Pe 99.8 4.2E-18 9E-23 118.5 16.0 117 9-129 2-138 (267)
234 CHL00071 tufA elongation facto 99.8 2.8E-18 6E-23 126.2 15.8 147 6-158 9-180 (409)
235 COG0532 InfB Translation initi 99.8 8.7E-18 1.9E-22 123.0 16.4 151 7-167 3-166 (509)
236 PLN00043 elongation factor 1-a 99.8 2.5E-18 5.4E-23 127.3 13.3 150 6-161 4-203 (447)
237 PRK05124 cysN sulfate adenylyl 99.8 2.4E-18 5.1E-23 128.4 13.1 153 5-162 23-216 (474)
238 KOG0077 Vesicle coat complex C 99.8 1.1E-18 2.3E-23 109.3 9.4 156 8-170 19-192 (193)
239 cd04170 EF-G_bact Elongation f 99.8 1.2E-18 2.5E-23 121.9 10.8 144 11-162 1-164 (268)
240 KOG0462 Elongation factor-type 99.8 3.9E-18 8.4E-23 124.7 13.4 160 7-170 58-234 (650)
241 COG3596 Predicted GTPase [Gene 99.8 2.1E-18 4.5E-23 116.8 10.8 163 4-170 34-221 (296)
242 PRK00049 elongation factor Tu; 99.8 2.2E-17 4.8E-22 121.0 16.5 157 6-168 9-200 (396)
243 COG1163 DRG Predicted GTPase [ 99.8 1.2E-17 2.7E-22 115.4 14.1 153 9-170 63-288 (365)
244 PLN03126 Elongation factor Tu; 99.8 2.3E-17 5E-22 122.8 16.6 147 6-158 78-249 (478)
245 PRK00741 prfC peptide chain re 99.8 1.7E-17 3.7E-22 124.9 15.8 117 7-127 8-144 (526)
246 TIGR02034 CysN sulfate adenyly 99.8 8.8E-18 1.9E-22 123.5 14.0 147 10-161 1-187 (406)
247 cd01899 Ygr210 Ygr210 subfamil 99.8 2E-17 4.4E-22 117.3 15.0 81 12-92 1-110 (318)
248 PLN03127 Elongation factor Tu; 99.8 2.9E-17 6.2E-22 121.6 15.8 159 5-169 57-250 (447)
249 cd01886 EF-G Elongation factor 99.8 2.8E-17 6E-22 114.6 14.8 112 11-128 1-130 (270)
250 KOG1145 Mitochondrial translat 99.8 3.2E-17 6.9E-22 120.1 15.3 153 7-167 151-312 (683)
251 PRK13351 elongation factor G; 99.8 1.5E-17 3.2E-22 129.6 14.6 121 4-128 3-139 (687)
252 PTZ00141 elongation factor 1- 99.8 1.8E-17 3.8E-22 122.9 14.0 151 6-161 4-203 (446)
253 PRK05506 bifunctional sulfate 99.8 2.7E-17 5.8E-22 127.0 15.2 153 4-161 19-211 (632)
254 COG0536 Obg Predicted GTPase [ 99.8 1.8E-17 3.8E-22 115.4 12.2 157 11-169 161-331 (369)
255 PF09439 SRPRB: Signal recogni 99.8 3.7E-18 8.1E-23 111.0 7.7 120 8-130 2-128 (181)
256 PTZ00327 eukaryotic translatio 99.7 6.6E-17 1.4E-21 119.6 14.5 162 6-169 31-231 (460)
257 COG5256 TEF1 Translation elong 99.7 6.4E-17 1.4E-21 115.2 13.5 154 5-161 3-201 (428)
258 COG0481 LepA Membrane GTPase L 99.7 5E-17 1.1E-21 117.4 12.9 162 3-170 3-185 (603)
259 PF01926 MMR_HSR1: 50S ribosom 99.7 1.8E-16 4E-21 97.4 13.3 106 11-123 1-116 (116)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.5E-16 3.2E-21 106.5 13.8 156 10-169 1-182 (196)
261 KOG1191 Mitochondrial GTPase [ 99.7 2.3E-17 5E-22 119.4 10.0 161 7-169 266-448 (531)
262 TIGR00484 EF-G translation elo 99.7 2.6E-16 5.6E-21 122.6 16.3 148 1-156 2-171 (689)
263 KOG0090 Signal recognition par 99.7 1.3E-16 2.8E-21 104.2 11.6 157 8-170 37-238 (238)
264 KOG3905 Dynein light intermedi 99.7 2E-16 4.4E-21 109.5 13.2 160 8-170 51-289 (473)
265 PRK12739 elongation factor G; 99.7 4.3E-16 9.3E-21 121.4 16.4 118 5-128 4-139 (691)
266 PRK09602 translation-associate 99.7 5.9E-16 1.3E-20 112.9 15.8 83 10-92 2-113 (396)
267 TIGR00503 prfC peptide chain r 99.7 1.2E-16 2.5E-21 120.4 12.2 119 6-128 8-146 (527)
268 PRK09866 hypothetical protein; 99.7 3.8E-15 8.2E-20 112.2 17.1 109 58-168 230-350 (741)
269 PRK00007 elongation factor G; 99.7 1.9E-15 4E-20 117.8 14.7 148 1-156 2-171 (693)
270 COG4917 EutP Ethanolamine util 99.7 7.9E-16 1.7E-20 92.2 8.7 136 11-168 3-143 (148)
271 PRK14845 translation initiatio 99.7 5.5E-15 1.2E-19 117.8 15.4 142 20-168 472-670 (1049)
272 PF05783 DLIC: Dynein light in 99.7 7.1E-15 1.5E-19 108.8 14.5 161 7-170 23-263 (472)
273 PRK12740 elongation factor G; 99.7 7.9E-15 1.7E-19 114.3 15.3 107 15-127 1-125 (668)
274 KOG1490 GTP-binding protein CR 99.6 1.6E-15 3.4E-20 110.3 10.2 161 6-169 165-339 (620)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.6 3E-14 6.4E-19 99.8 15.1 123 5-129 34-168 (313)
276 COG1217 TypA Predicted membran 99.6 5E-15 1.1E-19 107.0 10.9 158 9-170 5-194 (603)
277 cd01853 Toc34_like Toc34-like 99.6 3.7E-14 8E-19 97.7 14.8 121 6-129 28-164 (249)
278 KOG1707 Predicted Ras related/ 99.6 1.5E-14 3.2E-19 106.9 13.4 158 6-168 422-580 (625)
279 TIGR00101 ureG urease accessor 99.6 1.6E-14 3.5E-19 96.5 12.5 101 58-169 92-194 (199)
280 PTZ00258 GTP-binding protein; 99.6 2.3E-14 5E-19 103.8 14.2 86 7-92 19-126 (390)
281 TIGR00157 ribosome small subun 99.6 4.4E-15 9.5E-20 102.3 8.7 96 69-168 24-120 (245)
282 TIGR00490 aEF-2 translation el 99.6 8.2E-15 1.8E-19 114.6 10.6 118 7-128 17-152 (720)
283 PF04548 AIG1: AIG1 family; I 99.6 1.3E-14 2.7E-19 98.2 10.1 155 10-168 1-183 (212)
284 PRK13768 GTPase; Provisional 99.6 1E-14 2.2E-19 101.0 9.9 112 59-170 98-246 (253)
285 smart00010 small_GTPase Small 99.6 3.6E-14 7.8E-19 88.0 10.7 114 10-160 1-115 (124)
286 COG2895 CysN GTPases - Sulfate 99.6 6.9E-14 1.5E-18 98.0 12.9 150 6-160 3-192 (431)
287 cd00066 G-alpha G protein alph 99.6 8E-14 1.7E-18 99.5 13.0 113 57-169 160-309 (317)
288 PRK07560 elongation factor EF- 99.6 9.3E-14 2E-18 109.0 13.7 117 7-127 18-152 (731)
289 PRK09601 GTP-binding protein Y 99.6 3.9E-13 8.4E-18 96.5 15.0 83 10-92 3-107 (364)
290 smart00275 G_alpha G protein a 99.6 1.2E-13 2.6E-18 99.4 12.4 113 57-169 183-332 (342)
291 PF05049 IIGP: Interferon-indu 99.5 1.6E-13 3.4E-18 98.6 12.0 154 8-168 34-215 (376)
292 PLN00116 translation elongatio 99.5 7.6E-14 1.6E-18 110.8 11.1 118 6-127 16-163 (843)
293 TIGR00073 hypB hydrogenase acc 99.5 9.7E-14 2.1E-18 93.6 10.0 151 8-169 21-205 (207)
294 PF03029 ATP_bind_1: Conserved 99.5 2.1E-14 4.5E-19 98.4 6.7 111 59-169 92-235 (238)
295 PRK09435 membrane ATPase/prote 99.5 1.9E-13 4.2E-18 97.3 11.4 102 57-169 148-258 (332)
296 KOG0458 Elongation factor 1 al 99.5 4.8E-13 1E-17 99.1 13.5 156 5-161 173-372 (603)
297 PTZ00416 elongation factor 2; 99.5 1.5E-13 3.2E-18 109.0 11.5 118 6-127 16-157 (836)
298 COG5257 GCD11 Translation init 99.5 1.7E-13 3.6E-18 95.1 9.8 162 7-170 8-201 (415)
299 KOG0461 Selenocysteine-specifi 99.5 1.2E-12 2.7E-17 91.8 13.4 160 6-169 4-191 (522)
300 cd01882 BMS1 Bms1. Bms1 is an 99.5 1E-12 2.2E-17 89.6 12.8 140 7-158 37-183 (225)
301 cd01900 YchF YchF subfamily. 99.5 1.6E-12 3.4E-17 90.5 13.1 81 12-92 1-103 (274)
302 COG0378 HypB Ni2+-binding GTPa 99.5 3.7E-14 7.9E-19 92.0 4.4 53 117-169 145-199 (202)
303 KOG1486 GTP-binding protein DR 99.5 6.3E-12 1.4E-16 84.7 13.6 154 8-170 61-287 (364)
304 PF00735 Septin: Septin; Inte 99.4 3.9E-12 8.4E-17 89.2 12.7 138 9-151 4-181 (281)
305 KOG1144 Translation initiation 99.4 1.5E-12 3.3E-17 98.9 10.3 157 6-169 472-685 (1064)
306 TIGR02836 spore_IV_A stage IV 99.4 1.6E-11 3.4E-16 88.8 14.3 155 7-166 15-232 (492)
307 TIGR00750 lao LAO/AO transport 99.4 4.7E-12 1E-16 89.9 11.6 102 57-169 126-236 (300)
308 TIGR00993 3a0901s04IAP86 chlor 99.4 2.1E-11 4.5E-16 92.7 14.4 119 8-128 117-250 (763)
309 PF00350 Dynamin_N: Dynamin fa 99.4 3.6E-12 7.9E-17 83.2 8.9 63 59-124 102-168 (168)
310 COG0480 FusA Translation elong 99.4 1.1E-11 2.3E-16 95.9 12.5 120 6-129 7-143 (697)
311 COG1703 ArgK Putative periplas 99.4 8.7E-12 1.9E-16 86.1 9.9 102 57-169 143-252 (323)
312 PF03308 ArgK: ArgK protein; 99.4 1.2E-12 2.6E-17 89.0 5.3 151 7-168 27-227 (266)
313 KOG0082 G-protein alpha subuni 99.4 2.7E-11 5.9E-16 86.2 12.1 112 58-169 195-342 (354)
314 PRK10463 hydrogenase nickel in 99.3 1E-12 2.2E-17 91.5 4.6 55 115-169 231-287 (290)
315 smart00053 DYNc Dynamin, GTPas 99.3 5.1E-11 1.1E-15 81.5 12.7 68 58-128 125-206 (240)
316 COG4108 PrfC Peptide chain rel 99.3 2.3E-11 5E-16 87.7 11.4 139 6-150 9-167 (528)
317 KOG0410 Predicted GTP binding 99.3 3.7E-12 8E-17 88.6 6.6 151 6-168 175-338 (410)
318 COG3276 SelB Selenocysteine-sp 99.3 4E-11 8.6E-16 86.6 11.8 153 11-169 2-160 (447)
319 KOG1532 GTPase XAB1, interacts 99.3 1.1E-10 2.4E-15 79.7 13.1 109 58-168 116-261 (366)
320 COG0012 Predicted GTPase, prob 99.3 1.2E-10 2.5E-15 83.0 13.7 84 9-92 2-108 (372)
321 KOG3886 GTP-binding protein [S 99.3 7.7E-12 1.7E-16 83.2 7.0 147 8-156 3-164 (295)
322 KOG0468 U5 snRNP-specific prot 99.3 3E-11 6.4E-16 91.2 10.3 118 6-127 125-262 (971)
323 COG5019 CDC3 Septin family pro 99.3 9.6E-11 2.1E-15 83.0 12.3 138 8-150 22-200 (373)
324 KOG3887 Predicted small GTPase 99.3 7.6E-11 1.6E-15 79.1 9.8 159 9-170 27-201 (347)
325 KOG0705 GTPase-activating prot 99.2 2.2E-11 4.8E-16 90.0 7.1 157 6-169 27-187 (749)
326 cd01855 YqeH YqeH. YqeH is an 99.2 9.3E-11 2E-15 78.1 9.3 92 71-169 24-123 (190)
327 KOG1547 Septin CDC10 and relat 99.2 2.5E-10 5.4E-15 76.6 11.0 145 8-157 45-229 (336)
328 COG0050 TufB GTPases - transla 99.2 2.5E-10 5.4E-15 78.8 11.2 158 6-169 9-199 (394)
329 KOG2655 Septin family protein 99.2 4.9E-10 1.1E-14 80.0 12.7 141 9-154 21-200 (366)
330 cd01859 MJ1464 MJ1464. This f 99.2 1.2E-10 2.6E-15 75.2 7.9 93 71-169 2-94 (156)
331 PRK12289 GTPase RsgA; Reviewed 99.2 1.4E-10 3E-15 83.7 8.4 92 73-169 81-173 (352)
332 cd01854 YjeQ_engC YjeQ/EngC. 99.1 6.2E-10 1.4E-14 78.6 9.0 88 76-168 73-161 (287)
333 KOG2486 Predicted GTPase [Gene 99.1 2E-10 4.4E-15 78.5 6.0 156 6-168 133-313 (320)
334 COG5192 BMS1 GTP-binding prote 99.1 2.3E-09 4.9E-14 80.3 11.4 140 4-156 64-211 (1077)
335 PF00503 G-alpha: G-protein al 99.1 1.5E-09 3.2E-14 80.0 10.3 114 57-170 235-389 (389)
336 PRK12288 GTPase RsgA; Reviewed 99.1 1.5E-09 3.1E-14 78.4 10.0 88 79-169 118-206 (347)
337 PRK00098 GTPase RsgA; Reviewed 99.1 6.9E-10 1.5E-14 78.8 8.1 87 78-168 77-164 (298)
338 KOG1954 Endocytosis/signaling 99.1 1.3E-09 2.8E-14 77.5 9.1 122 7-131 56-228 (532)
339 TIGR03597 GTPase_YqeH ribosome 99.1 1.3E-09 2.8E-14 79.3 9.2 94 68-168 50-150 (360)
340 KOG1487 GTP-binding protein DR 99.0 1.6E-09 3.5E-14 73.6 7.7 87 10-99 60-154 (358)
341 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1E-09 2.2E-14 69.7 6.1 53 11-68 85-138 (141)
342 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.3E-09 4.9E-14 69.3 6.9 55 8-67 101-156 (157)
343 cd01858 NGP_1 NGP-1. Autoanti 99.0 3.2E-09 6.8E-14 68.6 7.3 89 78-169 5-93 (157)
344 COG5258 GTPBP1 GTPase [General 99.0 3.2E-09 7E-14 75.9 7.4 158 6-167 114-335 (527)
345 cd04178 Nucleostemin_like Nucl 99.0 2E-09 4.4E-14 70.4 6.0 55 8-67 116-171 (172)
346 KOG1491 Predicted GTP-binding 98.9 3.2E-09 7E-14 74.6 6.9 86 7-92 18-125 (391)
347 KOG1143 Predicted translation 98.9 6.7E-09 1.4E-13 74.2 8.4 159 4-166 162-383 (591)
348 KOG0448 Mitofusin 1 GTPase, in 98.9 4.7E-08 1E-12 74.5 13.0 146 7-156 107-311 (749)
349 KOG0467 Translation elongation 98.9 7.6E-09 1.6E-13 79.4 8.5 121 2-126 2-136 (887)
350 TIGR00092 GTP-binding protein 98.9 8.7E-09 1.9E-13 74.4 8.2 83 10-92 3-108 (368)
351 KOG4273 Uncharacterized conser 98.9 4.3E-08 9.4E-13 66.5 10.5 157 9-167 4-218 (418)
352 cd01855 YqeH YqeH. YqeH is an 98.9 4.3E-09 9.3E-14 70.2 5.3 54 9-67 127-189 (190)
353 cd01856 YlqF YlqF. Proteins o 98.9 1.1E-08 2.3E-13 67.1 6.8 56 8-68 114-170 (171)
354 cd01856 YlqF YlqF. Proteins o 98.9 2.1E-08 4.5E-13 65.7 8.0 97 65-169 2-99 (171)
355 cd01859 MJ1464 MJ1464. This f 98.8 1.6E-08 3.4E-13 65.3 7.1 56 8-67 100-155 (156)
356 cd01849 YlqF_related_GTPase Yl 98.8 3.3E-08 7E-13 63.8 8.2 82 83-168 1-82 (155)
357 KOG0460 Mitochondrial translat 98.8 5.4E-08 1.2E-12 68.7 9.6 150 5-157 50-224 (449)
358 KOG0465 Mitochondrial elongati 98.8 2.1E-08 4.6E-13 75.4 7.9 118 7-128 37-170 (721)
359 PRK09563 rbgA GTPase YlqF; Rev 98.8 2.1E-08 4.5E-13 71.0 7.4 57 8-69 120-177 (287)
360 TIGR03596 GTPase_YlqF ribosome 98.8 2.3E-08 5E-13 70.4 7.3 56 8-68 117-173 (276)
361 KOG0085 G protein subunit Galp 98.8 9.7E-09 2.1E-13 68.9 4.8 113 57-169 198-347 (359)
362 COG1618 Predicted nucleotide k 98.8 2.6E-06 5.7E-11 54.2 15.2 145 7-169 3-174 (179)
363 PRK10416 signal recognition pa 98.8 1.4E-07 3E-12 67.6 10.8 143 8-162 113-301 (318)
364 COG1161 Predicted GTPases [Gen 98.8 2E-08 4.3E-13 72.1 6.5 57 8-69 131-188 (322)
365 cd01851 GBP Guanylate-binding 98.8 2.5E-07 5.5E-12 63.2 11.3 95 7-101 5-112 (224)
366 cd01849 YlqF_related_GTPase Yl 98.8 2.5E-08 5.4E-13 64.3 6.0 56 7-67 98-154 (155)
367 KOG0464 Elongation factor G [T 98.8 1.8E-08 4E-13 73.0 5.6 118 7-128 35-168 (753)
368 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 7.4E-08 1.6E-12 61.1 7.6 77 76-158 6-84 (141)
369 PF03193 DUF258: Protein of un 98.7 2E-08 4.2E-13 64.5 4.8 24 10-33 36-59 (161)
370 TIGR00064 ftsY signal recognit 98.7 1.6E-07 3.5E-12 65.9 9.7 93 57-162 154-259 (272)
371 TIGR03348 VI_IcmF type VI secr 98.7 8.4E-08 1.8E-12 79.4 9.1 114 12-129 114-258 (1169)
372 PRK14974 cell division protein 98.7 1.8E-07 3.9E-12 67.3 9.6 93 58-163 223-322 (336)
373 TIGR03596 GTPase_YlqF ribosome 98.7 1E-07 2.2E-12 67.2 8.2 97 65-169 4-101 (276)
374 KOG0466 Translation initiation 98.7 1.2E-08 2.7E-13 71.0 3.2 162 7-170 36-240 (466)
375 cd03112 CobW_like The function 98.7 2.1E-07 4.5E-12 60.2 8.3 21 12-32 3-23 (158)
376 PRK13796 GTPase YqeH; Provisio 98.7 2.9E-07 6.3E-12 67.3 10.0 91 70-168 58-156 (365)
377 KOG3859 Septins (P-loop GTPase 98.7 1.5E-07 3.2E-12 64.9 7.6 117 8-128 41-190 (406)
378 KOG0447 Dynamin-like GTP bindi 98.6 4.2E-06 9E-11 63.1 14.8 82 59-143 413-508 (980)
379 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.4E-07 5.3E-12 65.6 7.7 97 65-169 7-104 (287)
380 PRK12288 GTPase RsgA; Reviewed 98.6 1.3E-07 2.8E-12 68.5 6.3 24 11-34 207-230 (347)
381 TIGR01425 SRP54_euk signal rec 98.6 2.1E-06 4.6E-11 63.6 12.0 133 9-152 100-273 (429)
382 KOG0463 GTP-binding protein GP 98.6 5.5E-07 1.2E-11 64.7 8.5 154 6-163 130-350 (641)
383 PF09547 Spore_IV_A: Stage IV 98.5 4.8E-06 1E-10 61.0 12.9 154 8-166 16-232 (492)
384 KOG0099 G protein subunit Galp 98.5 8.2E-07 1.8E-11 60.8 8.4 70 58-127 202-282 (379)
385 PRK01889 GTPase RsgA; Reviewed 98.5 7.5E-07 1.6E-11 64.9 8.9 84 79-167 110-193 (356)
386 PRK12289 GTPase RsgA; Reviewed 98.5 1.8E-07 3.9E-12 67.8 5.4 23 11-33 174-196 (352)
387 TIGR00157 ribosome small subun 98.5 2.7E-07 5.9E-12 63.9 5.6 24 10-33 121-144 (245)
388 PF03266 NTPase_1: NTPase; In 98.5 1.9E-06 4.1E-11 56.2 9.1 134 11-159 1-163 (168)
389 PRK14722 flhF flagellar biosyn 98.5 2.4E-06 5.1E-11 62.3 10.4 140 9-152 137-315 (374)
390 COG1162 Predicted GTPases [Gen 98.5 3.3E-07 7.1E-12 64.3 5.2 22 11-32 166-187 (301)
391 cd03110 Fer4_NifH_child This p 98.5 1.6E-05 3.5E-10 52.4 13.1 86 56-150 91-176 (179)
392 TIGR03597 GTPase_YqeH ribosome 98.5 3.4E-07 7.3E-12 66.9 5.4 56 10-70 155-216 (360)
393 PRK13695 putative NTPase; Prov 98.5 7.9E-06 1.7E-10 53.7 11.4 78 79-170 94-172 (174)
394 PRK13796 GTPase YqeH; Provisio 98.4 3.9E-07 8.5E-12 66.6 5.4 56 9-69 160-221 (365)
395 COG3523 IcmF Type VI protein s 98.4 1.3E-06 2.7E-11 71.5 8.2 115 12-128 128-270 (1188)
396 PRK12727 flagellar biosynthesi 98.4 9.2E-06 2E-10 61.6 11.4 134 9-152 350-518 (559)
397 PRK11537 putative GTP-binding 98.4 1.6E-05 3.5E-10 57.1 12.2 85 58-152 91-186 (318)
398 COG0523 Putative GTPases (G3E 98.4 2.5E-05 5.5E-10 56.1 12.5 88 58-153 85-184 (323)
399 cd03115 SRP The signal recogni 98.3 1E-05 2.3E-10 53.0 9.3 83 57-149 82-170 (173)
400 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.7E-06 3.6E-11 61.4 5.9 25 10-34 162-186 (287)
401 PRK00098 GTPase RsgA; Reviewed 98.3 2.3E-06 5E-11 61.0 6.3 26 9-34 164-189 (298)
402 PF11111 CENP-M: Centromere pr 98.3 6.1E-05 1.3E-09 48.7 12.0 143 2-168 8-150 (176)
403 PF02492 cobW: CobW/HypB/UreG, 98.3 1E-06 2.2E-11 58.2 4.0 81 58-145 85-171 (178)
404 PRK00771 signal recognition pa 98.3 1.6E-05 3.5E-10 59.3 10.3 136 8-153 94-267 (437)
405 COG1162 Predicted GTPases [Gen 98.3 9.3E-06 2E-10 57.1 8.3 94 73-169 71-165 (301)
406 KOG1424 Predicted GTP-binding 98.2 1.2E-06 2.7E-11 65.0 4.1 54 9-67 314-368 (562)
407 PF00448 SRP54: SRP54-type pro 98.2 2.4E-06 5.2E-11 57.2 4.9 84 58-152 84-174 (196)
408 PF06858 NOG1: Nucleolar GTP-b 98.2 8.2E-06 1.8E-10 42.7 5.7 45 80-125 12-58 (58)
409 cd03114 ArgK-like The function 98.2 6.6E-06 1.4E-10 52.6 6.4 58 57-125 91-148 (148)
410 cd02038 FleN-like FleN is a me 98.2 1.3E-05 2.8E-10 50.7 7.0 106 14-127 5-110 (139)
411 PRK14721 flhF flagellar biosyn 98.2 3E-05 6.6E-10 57.5 9.8 138 9-159 191-365 (420)
412 PRK14723 flhF flagellar biosyn 98.2 3.5E-05 7.5E-10 61.0 10.5 140 10-159 186-362 (767)
413 COG1419 FlhF Flagellar GTP-bin 98.2 6.5E-05 1.4E-09 55.0 11.1 134 8-151 202-371 (407)
414 KOG0459 Polypeptide release fa 98.2 3.7E-06 8E-11 60.9 4.7 155 6-163 76-278 (501)
415 TIGR00959 ffh signal recogniti 98.1 5.1E-05 1.1E-09 56.6 10.3 87 57-153 182-274 (428)
416 PRK10867 signal recognition pa 98.1 4E-05 8.7E-10 57.2 9.7 86 58-153 184-275 (433)
417 PRK06995 flhF flagellar biosyn 98.1 5.8E-05 1.3E-09 57.0 10.6 138 10-159 257-430 (484)
418 PRK11889 flhF flagellar biosyn 98.1 2.6E-05 5.7E-10 57.2 8.1 134 9-152 241-411 (436)
419 PRK05703 flhF flagellar biosyn 98.1 7.8E-05 1.7E-09 55.7 10.6 90 58-159 300-396 (424)
420 KOG2485 Conserved ATP/GTP bind 98.1 1.1E-05 2.3E-10 56.8 5.5 60 7-68 141-206 (335)
421 cd02042 ParA ParA and ParB of 98.1 6.4E-05 1.4E-09 45.0 8.2 82 12-105 2-84 (104)
422 PRK12726 flagellar biosynthesi 98.0 9.8E-05 2.1E-09 54.0 9.9 136 8-153 205-377 (407)
423 cd01983 Fer4_NifH The Fer4_Nif 98.0 0.00011 2.4E-09 43.0 8.6 96 12-122 2-99 (99)
424 KOG0469 Elongation factor 2 [T 98.0 4.9E-05 1.1E-09 57.0 8.0 126 8-137 18-174 (842)
425 KOG1534 Putative transcription 98.0 5E-05 1.1E-09 50.7 7.2 109 59-168 99-248 (273)
426 PF13555 AAA_29: P-loop contai 98.0 8.1E-06 1.8E-10 43.8 3.0 23 11-33 25-47 (62)
427 PRK12724 flagellar biosynthesi 98.0 0.00013 2.8E-09 54.1 10.1 134 9-152 223-393 (432)
428 KOG2484 GTPase [General functi 98.0 7.3E-06 1.6E-10 59.3 3.4 57 7-68 250-307 (435)
429 cd00009 AAA The AAA+ (ATPases 98.0 0.00013 2.8E-09 45.9 8.9 26 9-34 19-44 (151)
430 PRK12723 flagellar biosynthesi 98.0 0.00031 6.7E-09 51.9 11.7 140 8-159 173-351 (388)
431 PF13207 AAA_17: AAA domain; P 97.9 8.8E-06 1.9E-10 50.1 3.1 22 11-32 1-22 (121)
432 KOG2423 Nucleolar GTPase [Gene 97.9 8.5E-06 1.8E-10 59.1 2.9 85 5-97 303-390 (572)
433 KOG0780 Signal recognition par 97.9 5.2E-05 1.1E-09 55.0 6.7 92 8-99 100-231 (483)
434 cd03222 ABC_RNaseL_inhibitor T 97.9 0.00033 7.2E-09 46.2 10.0 25 10-34 26-50 (177)
435 PRK07261 topology modulation p 97.9 1.1E-05 2.4E-10 52.8 3.0 23 10-32 1-23 (171)
436 PRK08118 topology modulation p 97.9 1.2E-05 2.6E-10 52.5 3.1 23 10-32 2-24 (167)
437 TIGR00150 HI0065_YjeE ATPase, 97.9 0.0001 2.2E-09 46.1 6.6 25 9-33 22-46 (133)
438 COG0563 Adk Adenylate kinase a 97.9 1.5E-05 3.2E-10 52.6 3.0 23 10-32 1-23 (178)
439 cd03111 CpaE_like This protein 97.8 0.00016 3.4E-09 43.6 7.3 103 12-123 2-106 (106)
440 PF05621 TniB: Bacterial TniB 97.8 0.0002 4.4E-09 50.6 8.7 105 6-124 58-190 (302)
441 TIGR02475 CobW cobalamin biosy 97.8 0.00042 9.1E-09 50.5 10.5 21 12-32 7-27 (341)
442 PF13671 AAA_33: AAA domain; P 97.8 1.6E-05 3.5E-10 50.3 2.9 21 12-32 2-22 (143)
443 PRK06731 flhF flagellar biosyn 97.8 0.00025 5.4E-09 49.8 8.8 134 9-152 75-245 (270)
444 PF13521 AAA_28: AAA domain; P 97.8 1.3E-05 2.9E-10 52.0 2.2 22 11-32 1-22 (163)
445 COG1136 SalX ABC-type antimicr 97.8 1.9E-05 4.1E-10 53.6 2.9 24 11-34 33-56 (226)
446 KOG3929 Uncharacterized conser 97.8 3.7E-06 8E-11 57.6 -0.5 146 6-154 42-235 (363)
447 cd02019 NK Nucleoside/nucleoti 97.8 2.5E-05 5.3E-10 43.2 2.9 22 12-33 2-23 (69)
448 TIGR00235 udk uridine kinase. 97.8 3.4E-05 7.3E-10 52.2 3.7 27 6-32 3-29 (207)
449 COG1116 TauB ABC-type nitrate/ 97.8 3.3E-05 7.2E-10 52.8 3.6 23 12-34 32-54 (248)
450 COG1126 GlnQ ABC-type polar am 97.7 2.5E-05 5.5E-10 52.3 2.9 24 11-34 30-53 (240)
451 cd01131 PilT Pilus retraction 97.7 0.00026 5.6E-09 47.6 7.8 23 12-34 4-26 (198)
452 PRK13851 type IV secretion sys 97.7 0.00034 7.4E-09 50.9 8.7 27 8-34 161-187 (344)
453 PF00005 ABC_tran: ABC transpo 97.7 3.3E-05 7.1E-10 48.6 3.1 24 10-33 12-35 (137)
454 PRK10646 ADP-binding protein; 97.7 0.00038 8.2E-09 44.5 7.8 24 11-34 30-53 (153)
455 PRK10751 molybdopterin-guanine 97.7 4.5E-05 9.7E-10 49.9 3.7 26 7-32 4-29 (173)
456 PRK13900 type IV secretion sys 97.7 0.00033 7.3E-09 50.7 8.2 27 8-34 159-185 (332)
457 PRK13833 conjugal transfer pro 97.7 0.00026 5.6E-09 51.0 7.3 25 9-33 144-168 (323)
458 KOG1533 Predicted GTPase [Gene 97.7 0.0002 4.4E-09 48.6 6.2 21 10-30 3-23 (290)
459 smart00382 AAA ATPases associa 97.7 5.3E-05 1.2E-09 47.3 3.3 26 10-35 3-28 (148)
460 PRK14530 adenylate kinase; Pro 97.7 5.1E-05 1.1E-09 51.6 3.4 22 10-31 4-25 (215)
461 PF13238 AAA_18: AAA domain; P 97.6 4.6E-05 9.9E-10 47.2 2.8 21 12-32 1-21 (129)
462 COG3840 ThiQ ABC-type thiamine 97.6 6.9E-05 1.5E-09 49.1 3.5 25 10-34 26-50 (231)
463 PRK06217 hypothetical protein; 97.6 5.5E-05 1.2E-09 50.2 3.2 23 10-32 2-24 (183)
464 PRK05480 uridine/cytidine kina 97.6 6.8E-05 1.5E-09 50.8 3.6 26 7-32 4-29 (209)
465 PRK03839 putative kinase; Prov 97.6 5.7E-05 1.2E-09 49.9 3.1 22 11-32 2-23 (180)
466 PF02367 UPF0079: Uncharacteri 97.6 0.00015 3.2E-09 44.7 4.7 24 10-33 16-39 (123)
467 cd00071 GMPK Guanosine monopho 97.6 5.7E-05 1.2E-09 47.7 3.0 21 12-32 2-22 (137)
468 PRK10078 ribose 1,5-bisphospho 97.6 6.1E-05 1.3E-09 50.1 3.2 23 11-33 4-26 (186)
469 COG0802 Predicted ATPase or ki 97.6 0.00043 9.3E-09 43.8 6.7 25 10-34 26-50 (149)
470 PF04665 Pox_A32: Poxvirus A32 97.6 6.8E-05 1.5E-09 51.5 3.3 26 7-32 11-36 (241)
471 PRK08233 hypothetical protein; 97.6 7.7E-05 1.7E-09 49.2 3.5 24 9-32 3-26 (182)
472 PRK04195 replication factor C 97.6 0.0016 3.5E-08 49.8 11.0 25 9-33 39-63 (482)
473 cd01129 PulE-GspE PulE/GspE Th 97.6 0.00066 1.4E-08 47.7 8.2 23 11-33 82-104 (264)
474 cd01130 VirB11-like_ATPase Typ 97.6 0.00053 1.2E-08 45.6 7.4 25 9-33 25-49 (186)
475 TIGR02322 phosphon_PhnN phosph 97.6 6.1E-05 1.3E-09 49.7 2.9 22 11-32 3-24 (179)
476 cd00820 PEPCK_HprK Phosphoenol 97.6 7E-05 1.5E-09 44.9 2.8 21 10-30 16-36 (107)
477 PF07015 VirC1: VirC1 protein; 97.6 0.00037 8E-09 47.5 6.5 103 57-164 83-187 (231)
478 PF00004 AAA: ATPase family as 97.6 7.6E-05 1.7E-09 46.4 2.9 22 12-33 1-22 (132)
479 PF03205 MobB: Molybdopterin g 97.5 8E-05 1.7E-09 47.2 3.0 22 11-32 2-23 (140)
480 PRK14738 gmk guanylate kinase; 97.5 0.0001 2.2E-09 49.8 3.7 26 7-32 11-36 (206)
481 PF03215 Rad17: Rad17 cell cyc 97.5 0.00093 2E-08 51.3 9.1 83 83-168 133-227 (519)
482 cd02036 MinD Bacterial cell di 97.5 0.0055 1.2E-07 40.2 11.8 84 59-149 64-147 (179)
483 COG0194 Gmk Guanylate kinase [ 97.5 8.4E-05 1.8E-09 48.7 3.0 25 9-33 4-28 (191)
484 TIGR03263 guanyl_kin guanylate 97.5 8E-05 1.7E-09 49.1 3.0 22 11-32 3-24 (180)
485 cd03216 ABC_Carb_Monos_I This 97.5 0.00094 2E-08 43.4 7.9 25 10-34 27-51 (163)
486 cd02023 UMPK Uridine monophosp 97.5 7.5E-05 1.6E-09 50.1 2.8 21 12-32 2-22 (198)
487 COG1120 FepC ABC-type cobalami 97.5 7.9E-05 1.7E-09 51.7 3.0 21 12-32 31-51 (258)
488 TIGR01360 aden_kin_iso1 adenyl 97.5 8.2E-05 1.8E-09 49.3 2.9 22 10-31 4-25 (188)
489 PRK13894 conjugal transfer ATP 97.5 0.00057 1.2E-08 49.3 7.3 25 8-32 147-171 (319)
490 cd03238 ABC_UvrA The excision 97.5 9.7E-05 2.1E-09 48.6 3.1 23 9-31 21-43 (176)
491 TIGR02782 TrbB_P P-type conjug 97.5 0.00068 1.5E-08 48.5 7.6 24 9-32 132-155 (299)
492 PTZ00088 adenylate kinase 1; P 97.5 0.00013 2.8E-09 50.1 3.7 26 7-32 4-29 (229)
493 PRK14532 adenylate kinase; Pro 97.5 0.0001 2.2E-09 49.0 3.1 23 10-32 1-23 (188)
494 PRK14531 adenylate kinase; Pro 97.5 0.00011 2.4E-09 48.7 3.2 23 10-32 3-25 (183)
495 PRK00625 shikimate kinase; Pro 97.5 0.00011 2.3E-09 48.3 3.0 23 10-32 1-23 (173)
496 COG3640 CooC CO dehydrogenase 97.5 0.0004 8.6E-09 47.3 5.7 45 79-126 153-197 (255)
497 PRK01889 GTPase RsgA; Reviewed 97.5 0.00018 3.9E-09 52.7 4.5 25 10-34 196-220 (356)
498 PRK13949 shikimate kinase; Pro 97.5 0.00011 2.4E-09 48.1 3.0 22 11-32 3-24 (169)
499 PF07728 AAA_5: AAA domain (dy 97.5 0.00011 2.3E-09 46.4 2.9 22 11-32 1-22 (139)
500 COG3638 ABC-type phosphate/pho 97.5 0.00011 2.3E-09 50.0 2.9 21 11-31 32-52 (258)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-46 Score=236.19 Aligned_cols=165 Identities=42% Similarity=0.701 Sum_probs=159.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
.-...+||+++|+.|||||+|+.|+....+++++..|.++++....+..+++.++++||||+|++++++...+|++++++
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe-EEEeecCCCCChHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKGCS 163 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~~~ 163 (170)
+|+|||+++.+||+.+..|+.++.++..+++|.++|+||+|+.+++.++.++++.++..++++ ++++||+++.|+++.|
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
..|+..
T Consensus 165 ~~la~~ 170 (205)
T KOG0084|consen 165 LTLAKE 170 (205)
T ss_pred HHHHHH
Confidence 998864
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-43 Score=228.24 Aligned_cols=166 Identities=45% Similarity=0.739 Sum_probs=160.5
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
.+...-+||+++|++|||||+++.++....+...+..+.++++...++..++..+++++|||+|++.++.+...|+++++
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
++++|||+++..+|+.+..|+..+..+..+++|.++||||+|+..+|++..+.++++|.++|+.|+++||++|.||++.|
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
-.|++.
T Consensus 167 ~~La~~ 172 (207)
T KOG0078|consen 167 LSLARD 172 (207)
T ss_pred HHHHHH
Confidence 999864
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-43 Score=221.70 Aligned_cols=164 Identities=41% Similarity=0.778 Sum_probs=158.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+|++++|..++|||||+-|+..+.+.....+|++.-+....+.+++..+++.||||+|+++|.++...|++++++.|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||+++.+||..++.|+.++.....+++.+.+||||+|+.+.|++..++++.+|...++.|+++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HhhC
Q 030856 167 RRLI 170 (170)
Q Consensus 167 ~~~i 170 (170)
.+.|
T Consensus 163 a~~l 166 (200)
T KOG0092|consen 163 AEKL 166 (200)
T ss_pred HHhc
Confidence 9865
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-42 Score=220.46 Aligned_cols=165 Identities=81% Similarity=1.167 Sum_probs=158.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+..|++++|..+|||||||+++.++.+...|.+|++.++...++.+.+..+++++|||+|+++++.+...|+++++++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCC-CCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
|+|||+++..+|+....|+..+.++.+. ++.+++||||.|+.+++++..++.+..|+++++.|+++||+.|.||.++|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 9999999999999999999999999886 589999999999999999999999999999999999999999999999999
Q ss_pred HHHhhC
Q 030856 165 TIRRLI 170 (170)
Q Consensus 165 ~l~~~i 170 (170)
.|+..+
T Consensus 179 rIaa~l 184 (221)
T KOG0094|consen 179 RIAAAL 184 (221)
T ss_pred HHHHhc
Confidence 887643
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-42 Score=218.13 Aligned_cols=164 Identities=37% Similarity=0.688 Sum_probs=158.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....+|+.++|+.|||||+|+.+++...+.+.+..|.+.++....++++++++++++|||+|++.+++...+|++++-+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
|+|||++++++|..+..|+..++++..+++.+++++||+|+...|.++.++.+.||+++|+.++++||++++|++|.|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999987
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
+...
T Consensus 163 ta~~ 166 (216)
T KOG0098|consen 163 TAKE 166 (216)
T ss_pred HHHH
Confidence 7654
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.6e-42 Score=210.89 Aligned_cols=164 Identities=40% Similarity=0.698 Sum_probs=156.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|.+|+|||+|+-++....+++....++++++..+.+.+++..+++.||||+|+++++.+..+|++++.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 45699999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
+|||++.+++|..+..|++++..+.. +++..++|+||+|...+|.++.++...+|+++++-|++|||++.+++...|+.
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence 99999999999999999999988875 77888999999999889999999999999999999999999999999999999
Q ss_pred HHhhC
Q 030856 166 IRRLI 170 (170)
Q Consensus 166 l~~~i 170 (170)
++.+|
T Consensus 169 lveKI 173 (209)
T KOG0080|consen 169 LVEKI 173 (209)
T ss_pred HHHHH
Confidence 98764
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=8.4e-41 Score=221.42 Aligned_cols=162 Identities=35% Similarity=0.595 Sum_probs=150.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|..|+|||||+.++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999998887777788888887777888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++|+.+..|+..+.... ++.|++||+||.|+...+.+..++++.+++..++++++|||++|.|++++|++|
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999997765 689999999999998888889999999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 163 ~~~ 165 (189)
T cd04121 163 ARI 165 (189)
T ss_pred HHH
Confidence 875
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=7.2e-41 Score=223.64 Aligned_cols=160 Identities=34% Similarity=0.637 Sum_probs=148.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+.|+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888899988888888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHHHHHh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
|++++++|+.+..|+..+.....++.|+++|+||+|+...+++..++++++++.. ++.+++|||++|.|++++|+++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776678999999999999888889989999999885 789999999999999999999986
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 161 ~ 161 (202)
T cd04120 161 D 161 (202)
T ss_pred H
Confidence 4
No 9
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.3e-39 Score=211.52 Aligned_cols=161 Identities=34% Similarity=0.649 Sum_probs=148.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999988888888888888777777888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
||++++++|+.+..|+..+.....++.|+++|+||+|+..++.+..++++.+++..++++++|||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776678999999999999888888889999999999999999999999999999999986
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 162 ~ 162 (166)
T cd04122 162 K 162 (166)
T ss_pred H
Confidence 5
No 10
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.4e-39 Score=208.75 Aligned_cols=161 Identities=37% Similarity=0.654 Sum_probs=149.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
++|+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..+...++.++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888899988888788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
|++++++|+.+..|+..+......+.|+++|+||.|+.+++.+..+++..+++..++++++|||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887765679999999999998888888899999999999999999999999999999999876
Q ss_pred C
Q 030856 170 I 170 (170)
Q Consensus 170 i 170 (170)
+
T Consensus 161 ~ 161 (161)
T cd04117 161 V 161 (161)
T ss_pred C
Confidence 4
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.6e-39 Score=212.15 Aligned_cols=161 Identities=25% Similarity=0.471 Sum_probs=145.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|++|+|||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4578999999999999999999999999888889987555 356678888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEee
Q 030856 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 152 (170)
+|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..++++++|++.++ +|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 79999988765 6799999999999864 346889999999999996 999999
Q ss_pred cCCCCC-hHHHHHHHHhh
Q 030856 153 AKAGFN-IKGCSPTIRRL 169 (170)
Q Consensus 153 ~~~~~~-v~~~~~~l~~~ 169 (170)
|++|.| ++++|..+++.
T Consensus 161 Ak~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 161 ALQSENSVRDIFHVATLA 178 (182)
T ss_pred cCCCCCCHHHHHHHHHHH
Confidence 999998 99999998863
No 12
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.8e-39 Score=211.38 Aligned_cols=158 Identities=35% Similarity=0.575 Sum_probs=143.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|.+|+|||+|+.++..+.+...+.+|.+..+ ...+..++..+++.+|||+|++++..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888999987655 455667888899999999999999999999999999999999
Q ss_pred eCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCc----------ccCHHHHHHHHHhcCC-eEEEeecCCCC
Q 030856 90 DVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR----------QVSIEEGEAKSRELNV-MFIETSAKAGF 157 (170)
Q Consensus 90 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 157 (170)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.+ .+..++++.+++..++ .|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987765 579999999999996543 4788999999999998 69999999999
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|++++|+.+++.
T Consensus 160 nV~~~F~~~~~~ 171 (176)
T cd04133 160 NVKAVFDAAIKV 171 (176)
T ss_pred CHHHHHHHHHHH
Confidence 999999999874
No 13
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-39 Score=198.70 Aligned_cols=163 Identities=37% Similarity=0.688 Sum_probs=155.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
...|+.++|...+|||+|+.++.+..+...+.++.++++..+++.-..+.+++++|||+|++.|+.....++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 35799999999999999999999999999999999999999988777788999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
+||++|.++|..++.|.-.+..+...+.|+++|+||||+..+|.++.+..+.++.+.|+.|+++||+.+.|++.+|+.++
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999987
Q ss_pred hhC
Q 030856 168 RLI 170 (170)
Q Consensus 168 ~~i 170 (170)
..|
T Consensus 180 ~~I 182 (193)
T KOG0093|consen 180 DII 182 (193)
T ss_pred HHH
Confidence 643
No 14
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=9.6e-39 Score=209.51 Aligned_cols=160 Identities=33% Similarity=0.524 Sum_probs=144.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
.+||+++|.+|+|||||++++..+.++..+.++.+..+ ......++..+.+.+||+||++++..++..++.++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 57999999999999999999999998888888887444 44566788888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
||++++++|+.+..|+..+.... .+++|+++|+||+|+.+.+.+..++++.+++.+++++++|||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998888776643 36799999999999988888888999999999999999999999999999999998
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 161 ~~ 162 (172)
T cd04141 161 RE 162 (172)
T ss_pred HH
Confidence 64
No 15
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2e-38 Score=207.35 Aligned_cols=163 Identities=42% Similarity=0.726 Sum_probs=149.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999999888888888888777777778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
|||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887667899999999999987777888889999999999999999999999999999998
Q ss_pred hhC
Q 030856 168 RLI 170 (170)
Q Consensus 168 ~~i 170 (170)
+.+
T Consensus 162 ~~~ 164 (167)
T cd01867 162 KDI 164 (167)
T ss_pred HHH
Confidence 753
No 16
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.3e-38 Score=206.61 Aligned_cols=160 Identities=37% Similarity=0.687 Sum_probs=146.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|.+.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777666667777889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
|++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+++++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766689999999999998877778888899999999999999999999999999999875
No 17
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=204.32 Aligned_cols=169 Identities=38% Similarity=0.629 Sum_probs=156.5
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|+......-+||.+.|++|+|||||++++...++...+..+++.++..+.+.+++..+.++||||+|+++++++-..+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 56666677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCC--cccCHHHHHHHHHhcC-CeEEEeec
Q 030856 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELN-VMFIETSA 153 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~ 153 (170)
++|.++++||++++++|+.+..|..++..... ..-|++++|||+|+... ++++...++.+|+..| ++|+++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999877654 45789999999998753 8899999999999775 69999999
Q ss_pred CCCCChHHHHHHHHhh
Q 030856 154 KAGFNIKGCSPTIRRL 169 (170)
Q Consensus 154 ~~~~~v~~~~~~l~~~ 169 (170)
++..||++.|+.+.+.
T Consensus 161 K~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARR 176 (210)
T ss_pred cccccHHHHHHHHHHH
Confidence 9999999999998763
No 18
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=199.09 Aligned_cols=160 Identities=41% Similarity=0.695 Sum_probs=153.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
-++.+|+|++|+|||+|+.++....+..+|..++++++...++.+++..++++|||++|++.++.+...|+++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
||+++.+||.+...|+.++...+ +.+|-++|+||.|..+.+.+..++++.++...|+.+|++|+++++|++..|.-|.+
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~ 166 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK 166 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence 99999999999999999998877 58999999999999999999999999999999999999999999999999998876
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 167 q 167 (198)
T KOG0079|consen 167 Q 167 (198)
T ss_pred H
Confidence 4
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.6e-38 Score=209.14 Aligned_cols=158 Identities=26% Similarity=0.490 Sum_probs=142.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
++||+++|++|+|||||++++..+.++..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999998888898876553 5667888899999999999999999999999999999999
Q ss_pred EeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEeecC
Q 030856 89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAK 154 (170)
Q Consensus 89 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~ 154 (170)
||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..++++++++..++ +|++|||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999888765 6899999999999854 245889999999999997 89999999
Q ss_pred CCCC-hHHHHHHHHh
Q 030856 155 AGFN-IKGCSPTIRR 168 (170)
Q Consensus 155 ~~~~-v~~~~~~l~~ 168 (170)
+|++ ++++|..+++
T Consensus 159 ~~~~~v~~~F~~~~~ 173 (178)
T cd04131 159 TSEKSVRDIFHVATM 173 (178)
T ss_pred cCCcCHHHHHHHHHH
Confidence 9995 9999999876
No 20
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.3e-38 Score=210.94 Aligned_cols=160 Identities=31% Similarity=0.492 Sum_probs=141.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
..+||+++|..|+|||||+.++..+.++..+.|+.+..+ .....+++..+.+.+|||+|++.++.++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 468999999999999999999999999888889987554 3445678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcC-CeEEEeec
Q 030856 88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSA 153 (170)
Q Consensus 88 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~ 153 (170)
|||++++++|+.+. .|+..+.... +++|+++|+||.|+.+. +.+..++++.+++..+ +++++|||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999996 6887776654 68999999999998654 2367788999999998 59999999
Q ss_pred CCCCChHHHHHHHHhh
Q 030856 154 KAGFNIKGCSPTIRRL 169 (170)
Q Consensus 154 ~~~~~v~~~~~~l~~~ 169 (170)
++|.|++++|+++++.
T Consensus 160 k~g~~v~e~f~~l~~~ 175 (191)
T cd01875 160 LNQDGVKEVFAEAVRA 175 (191)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999875
No 21
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.7e-38 Score=205.85 Aligned_cols=161 Identities=41% Similarity=0.723 Sum_probs=148.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 37999999999999999999999988888888888888777777888888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
||++++++++.+..|+..+.....++.|+++|+||.|+...+.+..++++.++...+++++++||++|.|++++|.+|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999988776568999999999999877788889999999999999999999999999999999987
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 162 ~ 162 (166)
T cd01869 162 E 162 (166)
T ss_pred H
Confidence 5
No 22
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.9e-38 Score=205.57 Aligned_cols=160 Identities=43% Similarity=0.734 Sum_probs=152.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
||+++|++|||||||++++.++.++..+.++.+.+.....+..++..+.+.+||++|++.+..+...++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
++++++|+.+..|+..+......+.|+++++||.|+.+.+.++.++++++++.++++|++||++++.|+.++|..+++.|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998876799999999999988889999999999999999999999999999999999998753
No 23
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.3e-38 Score=211.88 Aligned_cols=160 Identities=36% Similarity=0.590 Sum_probs=145.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..+ +..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888999888877777777 7788999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCCChHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~ 163 (170)
||++++++|+.+..|+..+.... ..++|+++|+||+|+...+.+..++++++++..+ +.++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876542 2578999999999997667788899999999999 599999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|++.
T Consensus 161 ~~l~~~ 166 (201)
T cd04107 161 RFLVKN 166 (201)
T ss_pred HHHHHH
Confidence 999875
No 24
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.9e-38 Score=213.74 Aligned_cols=162 Identities=27% Similarity=0.460 Sum_probs=145.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....+||+++|++|||||+|++++..+.+...+.|+.+.++. ..+..++..+.+.+|||+|++.|..+...++.++|++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 346789999999999999999999999998889999886654 4567788899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEe
Q 030856 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIET 151 (170)
Q Consensus 86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 151 (170)
|+|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..++++++|+..++ .|++|
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et 167 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC 167 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence 999999999999984 89999988765 5789999999999864 367889999999999999 69999
Q ss_pred ecCCCC-ChHHHHHHHHhh
Q 030856 152 SAKAGF-NIKGCSPTIRRL 169 (170)
Q Consensus 152 S~~~~~-~v~~~~~~l~~~ 169 (170)
||++|. |++++|..+++.
T Consensus 168 SAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 168 SAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred cCCcCCcCHHHHHHHHHHH
Confidence 999998 899999998764
No 25
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=6.3e-38 Score=204.93 Aligned_cols=161 Identities=31% Similarity=0.567 Sum_probs=147.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-----CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+++....++.+.++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999987654 4799999999999976677788888889999999999999999999999999
Q ss_pred HHHhhC
Q 030856 165 TIRRLI 170 (170)
Q Consensus 165 ~l~~~i 170 (170)
+|.+.+
T Consensus 161 ~l~~~l 166 (168)
T cd04119 161 TLFSSI 166 (168)
T ss_pred HHHHHH
Confidence 998754
No 26
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-39 Score=206.19 Aligned_cols=164 Identities=37% Similarity=0.686 Sum_probs=158.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
-..-+||+++|++++|||-|+.++....+..+..+|.++++......++++.++.+||||+|+++|+.....|++++.+.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||+++..+|+.+..|+.+++.+.++++++++|+||+|+...|.+..++++.++...+..|+++||.++.|+++.|..
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~ 170 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFER 170 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
+...
T Consensus 171 ~l~~ 174 (222)
T KOG0087|consen 171 VLTE 174 (222)
T ss_pred HHHH
Confidence 7754
No 27
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=5.4e-38 Score=207.57 Aligned_cols=162 Identities=39% Similarity=0.660 Sum_probs=146.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC----------CeEEEEEEEecCChhhhhhhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS 77 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~ 77 (170)
..+||+++|++|+|||||++++..+.+...+.++.+.++....+... +..+.+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999988888888877776655443 45688999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC
Q 030856 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (170)
+++++|++++|||++++++|..+..|+..+.... .++.|+++|+||+|+.+.+.+..++++.++...+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999987654 357899999999999887888888999999999999999999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
.|++++|++|.+.
T Consensus 163 ~~v~~l~~~l~~~ 175 (180)
T cd04127 163 TNVEKAVERLLDL 175 (180)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999874
No 28
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-39 Score=196.44 Aligned_cols=163 Identities=37% Similarity=0.650 Sum_probs=155.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
..-+|++++|+.|+|||+|+++++..++.+....++++++....+.+.++.++++||||+|++.+++..+.|++++-+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 34589999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++|+.+..|+...+....+++-+++++||.|+.++++++..++..+|.+..+.+.++|+++|+|++|.|-..
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 166 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999776
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 167 ~~t 169 (214)
T KOG0086|consen 167 ART 169 (214)
T ss_pred HHH
Confidence 653
No 29
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-37 Score=202.92 Aligned_cols=163 Identities=39% Similarity=0.674 Sum_probs=148.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
..+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999988887777888777777777788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l 166 (170)
|||++++++++.+..|+..+......+.|+++|+||+|+.+.++...+++..+++.+++ .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876667899999999999988778888889999999887 78999999999999999999
Q ss_pred HhhC
Q 030856 167 RRLI 170 (170)
Q Consensus 167 ~~~i 170 (170)
++.+
T Consensus 162 ~~~l 165 (165)
T cd01864 162 ATEL 165 (165)
T ss_pred HHhC
Confidence 9864
No 30
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.6e-37 Score=202.65 Aligned_cols=162 Identities=37% Similarity=0.718 Sum_probs=148.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
.+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..+...++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999988878888888888888888888888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
||++++++++.+..|+..+......+.|+++|+||.|+...+.+..++.+.++...+++++++||++|.|++++|++|.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988876667999999999999877888888899999988999999999999999999999987
Q ss_pred hC
Q 030856 169 LI 170 (170)
Q Consensus 169 ~i 170 (170)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 64
No 31
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.5e-37 Score=210.47 Aligned_cols=164 Identities=38% Similarity=0.671 Sum_probs=152.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34669999999999999999999999988878889999898888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||++++++|+.+..|+..+......+.|+++|+||+|+...+.+..++++.++..++++++++||++|.|++++|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999999888888888999999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|++.
T Consensus 169 l~~~ 172 (216)
T PLN03110 169 ILLE 172 (216)
T ss_pred HHHH
Confidence 9865
No 32
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=7.2e-38 Score=206.83 Aligned_cols=159 Identities=22% Similarity=0.496 Sum_probs=141.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|..|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-----CcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-----KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
|++++++++.+..|+..+........| ++|+||+|+.. .+....++++++++..++++++|||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876555667 67899999852 122224677888999999999999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
++++.
T Consensus 160 ~l~~~ 164 (182)
T cd04128 160 IVLAK 164 (182)
T ss_pred HHHHH
Confidence 99864
No 33
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=8.2e-38 Score=203.56 Aligned_cols=161 Identities=35% Similarity=0.546 Sum_probs=142.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
++||+++|++|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999888777777765 44455667788888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
||++++++++.+..|+..+..... ++.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877543 6799999999999977777777888888888889999999999999999999998
Q ss_pred hhC
Q 030856 168 RLI 170 (170)
Q Consensus 168 ~~i 170 (170)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 764
No 34
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.2e-37 Score=201.21 Aligned_cols=161 Identities=38% Similarity=0.700 Sum_probs=148.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.+..+...+.++.+.++......+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777888887777777778888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
|+++++++..+..|+..+.....++.|+++|+||.|+...+.+..+++..+++..++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877767889999999999998878888899999999999999999999999999999999986
Q ss_pred C
Q 030856 170 I 170 (170)
Q Consensus 170 i 170 (170)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 4
No 35
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.2e-37 Score=202.56 Aligned_cols=161 Identities=37% Similarity=0.702 Sum_probs=148.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
.+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++....+.+||+||++.+..+...+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999988777778888888777788888888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
||++++++++.+..|+..+.....++.|+++|+||.|+.+.+.+..++++.++...+++++++||+++.|++++|.++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876678999999999999877778888999999999999999999999999999999987
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 164 ~ 164 (168)
T cd01866 164 E 164 (168)
T ss_pred H
Confidence 5
No 36
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.5e-37 Score=205.66 Aligned_cols=160 Identities=42% Similarity=0.707 Sum_probs=147.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988778888888887777788888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
|++++++++.+..|+..+......+.|+++|+||.|+.+.+.+..++++.+++..+++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766679999999999998778888889999999999999999999999999999999875
No 37
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.1e-37 Score=209.80 Aligned_cols=160 Identities=36% Similarity=0.530 Sum_probs=146.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC-eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888899999888877777754 578999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
||++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++.++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999887653 35789999999999877888889999999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|++.
T Consensus 161 l~~~ 164 (215)
T cd04109 161 LAAE 164 (215)
T ss_pred HHHH
Confidence 9875
No 38
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.5e-37 Score=202.56 Aligned_cols=161 Identities=32% Similarity=0.536 Sum_probs=142.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
++||+++|.+|+|||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998887777777776443 45566778888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
||++++++++.+..|+..+.... ..+.|+++|+||+|+..++.+..+++..+++..+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887654 36899999999999987777777888889999999999999999999999999998
Q ss_pred hhC
Q 030856 168 RLI 170 (170)
Q Consensus 168 ~~i 170 (170)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 764
No 39
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-38 Score=194.61 Aligned_cols=161 Identities=38% Similarity=0.648 Sum_probs=154.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
-+||+++|..|+|||+|++++..+-+++....+.+.++..+++.+++.+++++||||+|++++++...+|++.++++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
||++..++|+.+..|+.++..+...++.-++|+||.|+.+.+++..+.++++++.....|+++||++.+|++.+|..++.
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999998874
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 167 r 167 (213)
T KOG0095|consen 167 R 167 (213)
T ss_pred H
Confidence 3
No 40
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.4e-37 Score=203.38 Aligned_cols=158 Identities=30% Similarity=0.477 Sum_probs=139.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|.+|+|||||++++.++.++..+.|+.+..+. ..+..++..+.+.+||++|++.+..++..++.++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888899876554 44567788899999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcC-CeEEEeecCC
Q 030856 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSAKA 155 (170)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~ 155 (170)
|++++++|+.+. .|+..+.... ++.|+++|+||+|+.+. +.+..++++++++..+ +.+++|||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 5888876654 57999999999998643 5677889999999887 6999999999
Q ss_pred CCChHHHHHHHHhh
Q 030856 156 GFNIKGCSPTIRRL 169 (170)
Q Consensus 156 ~~~v~~~~~~l~~~ 169 (170)
|.|++++|+.+++.
T Consensus 160 g~~v~~~f~~~~~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999864
No 41
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=4.9e-37 Score=199.76 Aligned_cols=159 Identities=36% Similarity=0.668 Sum_probs=144.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC--CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
+||+++|.+|+|||||++++.++.+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888888888888877776666 677899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
|||++++++++.+..|+..+.... .++|+++|+||.|+..++.+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998886654 5899999999999988778888889999999999999999999999999999998
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=205.16 Aligned_cols=162 Identities=32% Similarity=0.539 Sum_probs=144.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999999988777778776444 556677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
+|||++++++|+.+..|+..+..... ++.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998877643 58999999999999777777888888899988999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|++.
T Consensus 162 l~~~ 165 (189)
T PTZ00369 162 LVRE 165 (189)
T ss_pred HHHH
Confidence 9865
No 43
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=5.4e-37 Score=205.59 Aligned_cols=161 Identities=39% Similarity=0.695 Sum_probs=147.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
..++|+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..++.++|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46899999999999999999999998888888898888877777778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
|||++++++|+.+..|+..+.... +..|+++|+||+|+.+.+.+..+++..++...+++++++|+++|.|++++|++|.
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 999999999999999999887654 5789999999999987777788889999999999999999999999999999998
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 164 ~~ 165 (199)
T cd04110 164 EL 165 (199)
T ss_pred HH
Confidence 64
No 44
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=9.4e-37 Score=198.23 Aligned_cols=161 Identities=81% Similarity=1.170 Sum_probs=148.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
.||+++|++|||||||++++.+..+...+.++.+.++....+..++..+++.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
|++++++|+.+..|+..+......+.|+++++||+|+.+.+....++...+++..+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877665679999999999997777778888899999999999999999999999999999886
Q ss_pred C
Q 030856 170 I 170 (170)
Q Consensus 170 i 170 (170)
+
T Consensus 161 l 161 (161)
T cd01861 161 L 161 (161)
T ss_pred C
Confidence 4
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=4.2e-37 Score=208.54 Aligned_cols=160 Identities=31% Similarity=0.560 Sum_probs=143.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999999988888999988888877777778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++|+.+..|+..+.... ++.|+++|+||+|+.. +.+..++. .+++..+++|++|||++|.|++++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999998764 6799999999999853 34444444 6778888999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 168 ~~~ 170 (219)
T PLN03071 168 ARK 170 (219)
T ss_pred HHH
Confidence 865
No 46
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.2e-37 Score=206.71 Aligned_cols=161 Identities=38% Similarity=0.716 Sum_probs=146.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe-CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.. ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888777888888887777766 4667899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
|||++++++|+.+..|+..+..... ...|+++|+||.|+...+.+..++...+++.++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999877654 457889999999998878888899999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 162 ~~~ 164 (211)
T cd04111 162 TQE 164 (211)
T ss_pred HHH
Confidence 875
No 47
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=5.3e-37 Score=199.80 Aligned_cols=161 Identities=35% Similarity=0.556 Sum_probs=142.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
++||+++|.+|+|||||++++..+.+...+.++.+ +........++....+.+||+||.+.+..++..++.++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999988877777665 45556677788888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+...+...+++..+++++++||+++.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888877543 6899999999999877677777778888888889999999999999999999998
Q ss_pred hhC
Q 030856 168 RLI 170 (170)
Q Consensus 168 ~~i 170 (170)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 764
No 48
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.1e-36 Score=198.45 Aligned_cols=161 Identities=46% Similarity=0.791 Sum_probs=147.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......++.++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888788888888888778888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
|++++++++.+..|+..+.....++.|+++|+||+|+...+.+..+.++++++..+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888776789999999999987777778888999999999999999999999999999999875
Q ss_pred C
Q 030856 170 I 170 (170)
Q Consensus 170 i 170 (170)
+
T Consensus 161 ~ 161 (164)
T smart00175 161 I 161 (164)
T ss_pred H
Confidence 3
No 49
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.5e-37 Score=204.08 Aligned_cols=160 Identities=41% Similarity=0.731 Sum_probs=145.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
+||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++..+.+.+|||||++.+......+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 46677877777777777888889999999999999999899999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
||++++++++.+..|+..+......+.|+++|+||.|+...+.+..++++.++..++++++++||++|.|++++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876668999999999999777777888899999999999999999999999999999986
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 161 ~ 161 (191)
T cd04112 161 E 161 (191)
T ss_pred H
Confidence 5
No 50
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2e-36 Score=198.37 Aligned_cols=163 Identities=39% Similarity=0.609 Sum_probs=146.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45699999999999999999999999888877888888877777888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKG 161 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~ 161 (170)
+|||++++++++.+..|...+..... .+.|+++|+||+|+. .+.+..++++++++.+++ +++++||++|.|+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999988766442 568999999999986 566778889999999885 899999999999999
Q ss_pred HHHHHHhhC
Q 030856 162 CSPTIRRLI 170 (170)
Q Consensus 162 ~~~~l~~~i 170 (170)
+|+++++.+
T Consensus 162 ~~~~~~~~~ 170 (170)
T cd04116 162 AFEEAVRRV 170 (170)
T ss_pred HHHHHHhhC
Confidence 999999764
No 51
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=205.11 Aligned_cols=163 Identities=34% Similarity=0.673 Sum_probs=149.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|++|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..++.++|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999999887777888888888878888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+.....++.|+++|+||+|+...+.+..++.+++++.++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877666789999999999998877888899999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 164 ~~~ 166 (210)
T PLN03108 164 AAK 166 (210)
T ss_pred HHH
Confidence 864
No 52
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1e-36 Score=200.25 Aligned_cols=160 Identities=31% Similarity=0.508 Sum_probs=140.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
.+||+++|.+|||||||+.++..+.+...+.++.. +........++..+.+.+|||+|++.+..++..++.++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 47999999999999999999999988888888876 44445566788889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecC
Q 030856 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK 154 (170)
Q Consensus 89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~ 154 (170)
||++++++|+.+. .|+..+.... ++.|+++|+||.|+.+. +.+..++++.+++.++. ++++|||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999995 6888776654 58999999999998542 35788999999999995 99999999
Q ss_pred CCCChHHHHHHHHhhC
Q 030856 155 AGFNIKGCSPTIRRLI 170 (170)
Q Consensus 155 ~~~~v~~~~~~l~~~i 170 (170)
+|.|++++|+.+++.+
T Consensus 159 ~~~~i~~~f~~l~~~~ 174 (174)
T cd01871 159 TQKGLKTVFDEAIRAV 174 (174)
T ss_pred ccCCHHHHHHHHHHhC
Confidence 9999999999998754
No 53
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.6e-36 Score=198.62 Aligned_cols=159 Identities=35% Similarity=0.611 Sum_probs=142.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
||+++|.+|||||||++++..+.+...+.++.+.++........+..+.+.+||+||++.+..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999999988887777788888999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcc--cCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
++++++++.+..|+..+..... .+.|+++|+||.|+.+.+. ...+++..++++++++++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998866543 4578999999999865443 345677788888899999999999999999999998
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 162 ~~ 163 (170)
T cd04108 162 AL 163 (170)
T ss_pred HH
Confidence 64
No 54
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=5e-37 Score=204.45 Aligned_cols=158 Identities=37% Similarity=0.588 Sum_probs=140.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
||+++|.+|+|||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777777776443 3445577888899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 91 VASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
++++++|+.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988876542 5789999999999987778888888899999999999999999999999999998
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 160 ~~ 161 (190)
T cd04144 160 RA 161 (190)
T ss_pred HH
Confidence 75
No 55
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.7e-36 Score=198.75 Aligned_cols=162 Identities=36% Similarity=0.613 Sum_probs=147.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-hhhhhhhcCCcEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVV 87 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~ 87 (170)
.++|+++|++|+|||||++++....++..+.++.+.++.......++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999998888888888888888888888888999999999999886 578888999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCC---CCChHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKGCS 163 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~v~~~~ 163 (170)
|||++++++++.+..|+..+.... ..++|+++|+||+|+...+++..+++++++...++++++|||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887764 36799999999999988888888899999999999999999999 89999999
Q ss_pred HHHHhhC
Q 030856 164 PTIRRLI 170 (170)
Q Consensus 164 ~~l~~~i 170 (170)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998754
No 56
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.5e-36 Score=198.09 Aligned_cols=159 Identities=32% Similarity=0.489 Sum_probs=139.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+..+...++..+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988777777766333 444556677789999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
|++++++++.+..|+..+..... ++.|+++|+||+|+...+.+..+++..++..+++.+++|||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887766532 579999999999997777788888888999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 863
No 57
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.6e-36 Score=195.88 Aligned_cols=162 Identities=46% Similarity=0.797 Sum_probs=148.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
++||+++|++|+|||||++++.++.+...+.++.+.++.......++....+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998777788888777777778888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
||++++++++....|+..+.....++.|+++++||+|+...+....++...++...++.++++||++|.|++++|++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998877678999999999998877777888889999999999999999999999999999988
Q ss_pred hC
Q 030856 169 LI 170 (170)
Q Consensus 169 ~i 170 (170)
.|
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 64
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.5e-36 Score=198.11 Aligned_cols=157 Identities=32% Similarity=0.585 Sum_probs=139.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|||||||++++..+.+...+.++.+.+........++..+.+.+|||+|++.+..+...++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888788888888887777777788899999999999999988899999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
|++++++++.+..|+..+..... +.|+++|+||+|+.. +... .+..++++..+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988764 899999999999863 3333 34456777788899999999999999999999875
No 59
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.4e-36 Score=205.07 Aligned_cols=155 Identities=35% Similarity=0.581 Sum_probs=136.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|.+|+|||||++++..+.+.. +.++.+.++..... ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46777665544332 4578999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CcccCHHHHHHHHHhcC-----
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVSIEEGEAKSRELN----- 145 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 145 (170)
|++++++|+.+..|+..+.....++.|+++|+||+|+.+ .+.+..++++.++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888888766557899999999999875 67888999999999876
Q ss_pred ---------CeEEEeecCCCCChHHHHHHHHhh
Q 030856 146 ---------VMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 146 ---------~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
++|++|||++|.||+++|..+++.
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999999875
No 60
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=193.01 Aligned_cols=163 Identities=39% Similarity=0.703 Sum_probs=150.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe-CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
..+++.++|++-+|||+|++.+..+++..-..||.+.++....+.. ++..+++++|||+|++.+++..++|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4689999999999999999999999999988999999998877655 577899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CC-CeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SD-VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~-~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
++||++|+++|+.+..|+.+...+.. |. +.+.+|++|+|+..+|+++.++++++++.+|..|+++|+++|.|+++.|.
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence 99999999999999999999888765 44 44689999999999999999999999999999999999999999999999
Q ss_pred HHHhhC
Q 030856 165 TIRRLI 170 (170)
Q Consensus 165 ~l~~~i 170 (170)
.|.+.|
T Consensus 167 mlaqeI 172 (213)
T KOG0091|consen 167 MLAQEI 172 (213)
T ss_pred HHHHHH
Confidence 998753
No 61
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3.5e-36 Score=196.08 Aligned_cols=161 Identities=34% Similarity=0.556 Sum_probs=141.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
.+||+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+|||||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999887767667766333 44456777788999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
||++++++++.+..|+..+.+.. ..+.|+++++||+|+..++.+..+++.++++..+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35799999999999987777777888899999899999999999999999999998
Q ss_pred hhC
Q 030856 168 RLI 170 (170)
Q Consensus 168 ~~i 170 (170)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 753
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.3e-36 Score=197.02 Aligned_cols=160 Identities=38% Similarity=0.575 Sum_probs=140.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|||||||++++.++.+...+.++.+ +........++..+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888777777665 344455667778889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
|++++++++.+..|...+..... .+.|+++|+||+|+...+....+++..+++..+++++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888766543 57899999999999877777788888899999999999999999999999999987
Q ss_pred hC
Q 030856 169 LI 170 (170)
Q Consensus 169 ~i 170 (170)
.+
T Consensus 160 ~~ 161 (164)
T smart00173 160 EI 161 (164)
T ss_pred HH
Confidence 53
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=4.5e-36 Score=195.07 Aligned_cols=160 Identities=32% Similarity=0.536 Sum_probs=140.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
++||+++|++|+|||||++++.++.+...+.++.+.. .......++..+.+.+||++|++.+..++..++.++|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 3789999999999999999999988877777777643 345566777788899999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
||++++.+++.+..|+..+.+... .+.|+++|+||+|+.. +.....++..+++..+++++++||++|.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888877643 5799999999999865 45667788888888899999999999999999999998
Q ss_pred hhC
Q 030856 168 RLI 170 (170)
Q Consensus 168 ~~i 170 (170)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 64
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.2e-36 Score=202.88 Aligned_cols=158 Identities=22% Similarity=0.471 Sum_probs=138.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
++||+++|++|+|||||++++..+.++..+.|+.+.++. ..+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999998889999876554 5667888899999999999999999999999999999999
Q ss_pred EeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecC
Q 030856 89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK 154 (170)
Q Consensus 89 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~ 154 (170)
||++++++|+.+ ..|...+... .++.|+++|+||+|+... ..+..++++.+++..++ +|++|||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999999 4576665443 478999999999998542 13678899999999996 99999999
Q ss_pred CCCC-hHHHHHHHHh
Q 030856 155 AGFN-IKGCSPTIRR 168 (170)
Q Consensus 155 ~~~~-v~~~~~~l~~ 168 (170)
++.+ ++++|..+..
T Consensus 159 ~~~~~V~~~F~~~~~ 173 (222)
T cd04173 159 SSERSVRDVFHVATV 173 (222)
T ss_pred cCCcCHHHHHHHHHH
Confidence 9985 9999998875
No 65
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.3e-35 Score=193.42 Aligned_cols=159 Identities=35% Similarity=0.576 Sum_probs=141.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
+||+++|++|||||||++++.+. .++.++.++.+.++.......+ +..+.+.+||+||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5677888888888776666554 56789999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+++...+++.++...+++++++||+++.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887764 579999999999998777777777788888888999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 160 ~~~ 162 (164)
T cd04101 160 ARA 162 (164)
T ss_pred HHH
Confidence 875
No 66
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.3e-36 Score=199.33 Aligned_cols=158 Identities=34% Similarity=0.563 Sum_probs=136.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
.||+++|++|+|||||++++.++.++..+.++.+..+. ..+..++..+.+.+||++|++.+..++..++.++|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999988888888775543 34556777889999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhcC-CeEEEeecCC
Q 030856 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELN-VMFIETSAKA 155 (170)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~~ 155 (170)
|++++++|+.+. .|+..+.... ++.|+++|+||+|+.+.+ .+..+++..+++..+ +++++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 6888887654 589999999999986543 345677888888877 6999999999
Q ss_pred CCChHHHHHHHHhh
Q 030856 156 GFNIKGCSPTIRRL 169 (170)
Q Consensus 156 ~~~v~~~~~~l~~~ 169 (170)
|.|++++|.+|++.
T Consensus 159 ~~~v~e~f~~l~~~ 172 (189)
T cd04134 159 NRGVNEAFTEAARV 172 (189)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999864
No 67
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=6.8e-36 Score=199.63 Aligned_cols=160 Identities=24% Similarity=0.321 Sum_probs=135.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh--------hhhhhhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD 81 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 81 (170)
+||+++|.+|||||||++++.++.++..+.|+.+.++....+..++..+.+.+|||||...+.. .....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988888888887676666667788889999999999654321 23345789
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-hcCCeEEEeecCCCC
Q 030856 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF 157 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~ 157 (170)
+|++|+|||++++++|+.+..|+..+.... .+++|+++|+||+|+...+.+..++++.++. ..+++|++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 3679999999999997777777777777765 568999999999999
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|++++|+.+++.
T Consensus 161 ~v~~lf~~i~~~ 172 (198)
T cd04142 161 HILLLFKELLIS 172 (198)
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 68
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2.5e-35 Score=191.51 Aligned_cols=161 Identities=38% Similarity=0.679 Sum_probs=143.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+.........+....+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887666667666666666667777789999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
|++++++++.+..|+..+......+.|+++|+||+|+...+.+..++..++++..+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888776689999999999998777777788888899999999999999999999999999875
Q ss_pred C
Q 030856 170 I 170 (170)
Q Consensus 170 i 170 (170)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 69
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.5e-35 Score=192.63 Aligned_cols=156 Identities=29% Similarity=0.533 Sum_probs=136.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777777776666666777888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
|++++.+++.+..|+..+.... ++.|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987653 57999999999998432 1344566777788999999999999999999999864
No 70
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.3e-35 Score=198.04 Aligned_cols=152 Identities=29% Similarity=0.547 Sum_probs=136.7
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh
Q 030856 15 LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR 94 (170)
Q Consensus 15 ~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (170)
+|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888889998888888888888889999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 95 QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+|+.+..|+..+.+.. +++|+++|+||+|+.. +.+..+. ..+++..++.|++|||++|.|++++|++|++.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999998765 6899999999999854 4444444 46788889999999999999999999999874
No 71
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.6e-35 Score=194.73 Aligned_cols=156 Identities=33% Similarity=0.540 Sum_probs=136.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeC
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 91 (170)
|+++|++|||||||++++.++.+...+.++....+ ......++..+.+.+|||||++.+..++..++.++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998887777776443 44566778888999999999999999999999999999999999
Q ss_pred CChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecCCCC
Q 030856 92 ASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (170)
Q Consensus 92 ~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 157 (170)
+++++|+.+. .|+..+.... ++.|+++|+||+|+... +.+..++++.+++..++ .+++|||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 5888887654 68999999999998653 33778888999999997 99999999999
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|++++|+.+.+.
T Consensus 159 ~v~~lf~~l~~~ 170 (174)
T smart00174 159 GVREVFEEAIRA 170 (174)
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
No 72
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.4e-35 Score=196.06 Aligned_cols=158 Identities=31% Similarity=0.468 Sum_probs=137.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
+||+++|++|+|||||++++.++.++..+.++.+.++... +... +..+.+.+|||||++.+..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888877665443 4443 6778999999999999999999999999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC----cccCHHHHHHHHHhcCC-eEEEeecCCCCChHHH
Q 030856 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGC 162 (170)
Q Consensus 89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~ 162 (170)
||++++++|+.+. .|+..+... .++.|+++|+||.|+... +.+..+++++++...++ ++++|||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 587777654 367999999999998653 35678889999999998 9999999999999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
|+.+++.
T Consensus 159 f~~l~~~ 165 (187)
T cd04132 159 FDTAIEE 165 (187)
T ss_pred HHHHHHH
Confidence 9999864
No 73
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=6.4e-35 Score=189.62 Aligned_cols=160 Identities=43% Similarity=0.718 Sum_probs=142.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788877777666667777889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
|++++++++.+..|+..+..... .+.|+++|+||+|+. .+....++...++...+++++++|+++|.|++++++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999998887754 689999999999986 4456678888999999999999999999999999999987
Q ss_pred hC
Q 030856 169 LI 170 (170)
Q Consensus 169 ~i 170 (170)
.+
T Consensus 160 ~~ 161 (161)
T cd01863 160 KI 161 (161)
T ss_pred hC
Confidence 64
No 74
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.4e-35 Score=196.34 Aligned_cols=158 Identities=30% Similarity=0.376 Sum_probs=130.0
Q ss_pred ceeEEEEcCCCCCHHHHHH-HHhcCC-----CCCCccceeee-eeeEEE--------EEeCCeEEEEEEEecCChhhhhh
Q 030856 9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDNTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS 73 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 73 (170)
.+||+++|.+|||||||+. ++..+. +...+.||.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 555432 34566777742 222211 24678889999999999875 3
Q ss_pred hhhhhhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CcccC
Q 030856 74 LIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVS 133 (170)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~-------------------~~~~~ 133 (170)
+...+++++|++|+|||++++++|+.+. .|+..+.... ++.|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999996 5988887664 5789999999999863 47788
Q ss_pred HHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 134 IEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+++++++++.+++|++|||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999875
No 75
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.3e-34 Score=189.66 Aligned_cols=164 Identities=37% Similarity=0.632 Sum_probs=146.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+......++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34599999999999999999999988877777788877777777888888889999999999999998899999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+...+++..+..+.+.+....++++||+++|.|++++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766679999999999998777777777788888888999999999999999999999
Q ss_pred HhhC
Q 030856 167 RRLI 170 (170)
Q Consensus 167 ~~~i 170 (170)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8753
No 76
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=5.6e-35 Score=195.17 Aligned_cols=159 Identities=36% Similarity=0.620 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
+||+++|++|+|||||++++.++.+.. .+.++.+.++....+..++..+.+.+||++|++.+..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 6778888777777788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC----cccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
||++++++++.+..|+..+.... ++.|+++|+||+|+.+. +.+..++++.++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887653 57999999999998532 34556778888888899999999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
+|.+.
T Consensus 160 ~i~~~ 164 (193)
T cd04118 160 KVAED 164 (193)
T ss_pred HHHHH
Confidence 99864
No 77
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.8e-35 Score=189.81 Aligned_cols=154 Identities=17% Similarity=0.325 Sum_probs=130.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||+.++..+.+...+.++. ..+ ...+.+++..+.+.+||++|++. ..++.++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 589999999999999999999887766554443 233 35567788888999999999864 34678899999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCcccCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~ 165 (170)
|++++++|+.+..|+..+..... ++.|+++|+||.|+. ..+.+..++++++++.. ++.|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987754 678999999999985 35778888889999876 489999999999999999999
Q ss_pred HHhhC
Q 030856 166 IRRLI 170 (170)
Q Consensus 166 l~~~i 170 (170)
+++.+
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 98764
No 78
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.6e-37 Score=189.67 Aligned_cols=164 Identities=39% Similarity=0.655 Sum_probs=156.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..-++|++++|...+|||||+-++...++......+....+..+.+.+.+....+.||||+|++.|-.+-..|++++++.
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 34579999999999999999999999999988888888888899998999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||++|+++|+.++.|..+++...+..+-+++|+||+|+.+++.++.++++.+++..|..++++||+++.|+.++|+.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.++
T Consensus 170 Lt~~ 173 (218)
T KOG0088|consen 170 LTAK 173 (218)
T ss_pred HHHH
Confidence 8764
No 79
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1e-34 Score=196.25 Aligned_cols=163 Identities=38% Similarity=0.646 Sum_probs=141.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....+||+++|.+|+|||||++++.+..+ ..+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34579999999999999999999998876 35667777777777777788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHH-HHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 86 VVVYDVASRQSFLNTSK-WIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~-~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
++|||++++++|+.+.. |...+.... ..+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999975 555554433 2568999999999998777788888889999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|.+.
T Consensus 170 ~~l~~~ 175 (211)
T PLN03118 170 EELALK 175 (211)
T ss_pred HHHHHH
Confidence 999865
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=5.5e-35 Score=200.79 Aligned_cols=159 Identities=28% Similarity=0.454 Sum_probs=139.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|.+|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.||||+|.+.+..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988877778776 556667778888899999999999999888888899999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHh---------cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-cCCeEEEeecCCCCCh
Q 030856 90 DVASRQSFLNTSKWIDEVRTE---------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v 159 (170)
|++++++|+.+..|+..+... ...+.|+++|+||+|+...+++..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 225799999999999987677888888877764 4679999999999999
Q ss_pred HHHHHHHHhh
Q 030856 160 KGCSPTIRRL 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|++.
T Consensus 160 ~elf~~L~~~ 169 (247)
T cd04143 160 DEMFRALFSL 169 (247)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=9.4e-35 Score=190.12 Aligned_cols=160 Identities=34% Similarity=0.509 Sum_probs=141.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
.+||+++|.+|+|||||++++.++.+...+.++.+.. .......++..+.+.+||+||++.+..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 3789999999999999999999988877777777643 345566778888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCCChHHHHHHH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l 166 (170)
||++++++++.+..|...+.... ..+.|+++++||.|+...+....++...+++..+ ++++++||+++.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887643 3579999999999998777778888888888888 799999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 160 ~~~ 162 (168)
T cd04177 160 VRQ 162 (168)
T ss_pred HHH
Confidence 865
No 82
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.7e-34 Score=189.43 Aligned_cols=160 Identities=43% Similarity=0.696 Sum_probs=141.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.+..+...+.++.+.++........+..+.+.+||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777788887777777778888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCCChHHHHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~ 164 (170)
|++++++++....|...+..... .+.|+++|+||+|+..++....++.+.+++..+ ++++++|+++|.|++++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999888887655543 379999999999997666677788888888887 7999999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
++.+.
T Consensus 161 ~i~~~ 165 (172)
T cd01862 161 TIARK 165 (172)
T ss_pred HHHHH
Confidence 99864
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=4.1e-35 Score=191.27 Aligned_cols=159 Identities=31% Similarity=0.525 Sum_probs=135.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-hhhhhhhhhcCCcEEEEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 89 (170)
||+++|++|+|||||++++..+.+...+.++....+ .....+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998877666666664333 44556778888999999999885 3445677889999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC-ChHHHHHHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NIKGCSPTI 166 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~~~l 166 (170)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++++.+++..+++++++||+++. |++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887654 3579999999999997777888888999999999999999999994 999999999
Q ss_pred HhhC
Q 030856 167 RRLI 170 (170)
Q Consensus 167 ~~~i 170 (170)
++.+
T Consensus 160 ~~~~ 163 (165)
T cd04146 160 CREV 163 (165)
T ss_pred HHHH
Confidence 8753
No 84
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=2.9e-34 Score=185.67 Aligned_cols=159 Identities=48% Similarity=0.830 Sum_probs=146.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.+......+.++.+.+........++....+.+||+||...+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
|++++++++.+..|+..+......+.|+++++||+|+........++.+.++...+++++++|++++.|+++++++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999988876678999999999999756677788999999999999999999999999999999864
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.5e-34 Score=190.03 Aligned_cols=157 Identities=35% Similarity=0.519 Sum_probs=136.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+|++++|++|+|||||++++.++.+...+.++.. +........++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999888877777763 555556777788889999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 155 (170)
|++++++|+.+. .|+..+.... ++.|+++++||.|+.. ++.+..++++.+++..++ .+++|||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999984 6887777543 5799999999999863 456778889999999998 999999999
Q ss_pred CCChHHHHHHHHh
Q 030856 156 GFNIKGCSPTIRR 168 (170)
Q Consensus 156 ~~~v~~~~~~l~~ 168 (170)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=7.3e-35 Score=190.65 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=139.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
.+.+||+++|.+|+|||||++++.++.+. ..+.++.+.++....+..++..+.+.+||++|.+.+..+...++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35689999999999999999999999988 88889988777767777788888899999999999988999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~ 164 (170)
++|||++++++++.+..|+..+... .+.|+++|+||+|+.+.+.....+.+++++.+++ .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999998888765332 4799999999999876555444556778888887 579999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
.|++.
T Consensus 160 ~l~~~ 164 (169)
T cd01892 160 KLATA 164 (169)
T ss_pred HHHHH
Confidence 99875
No 87
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1.8e-34 Score=189.80 Aligned_cols=159 Identities=28% Similarity=0.477 Sum_probs=137.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++..+.+...+.++.. +.....+..++..+.+.+||+||++.+...+..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777777665 334445667788889999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 155 (170)
|++++++|+.+. .|+..+... .++.|+++|+||+|+.+. +.+..++++.+++..++ ++++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999985 677777655 578999999999998543 35778889999999997 899999999
Q ss_pred CCChHHHHHHHHhhC
Q 030856 156 GFNIKGCSPTIRRLI 170 (170)
Q Consensus 156 ~~~v~~~~~~l~~~i 170 (170)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=1.9e-34 Score=195.85 Aligned_cols=158 Identities=34% Similarity=0.472 Sum_probs=136.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc-CCcEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVV 87 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 87 (170)
+||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++....+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888776 56666665566777777888889999999999882 33445566 8999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
|||++++++|+.+..|+..+..... .+.|+++|+||+|+...+.+..++++.++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988877543 579999999999998878888888889999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 159 ~~~ 161 (221)
T cd04148 159 VRQ 161 (221)
T ss_pred HHH
Confidence 875
No 89
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.8e-37 Score=184.30 Aligned_cols=157 Identities=39% Similarity=0.707 Sum_probs=148.4
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeC
Q 030856 13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (170)
Q Consensus 13 ~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 91 (170)
+++|++++|||+|+-++..+.+- .+..++.++++..+.+..++..+++++|||+|++++++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999988877664 67889999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.|..||++.+.|+.++..+....+.+++++||+|+..++.+..++.+++++.+++||+++|+++|.|++..|-.|++.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~ 158 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEE 158 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHH
Confidence 999999999999999999888889999999999999999999999999999999999999999999999999988864
No 90
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=175.58 Aligned_cols=165 Identities=34% Similarity=0.631 Sum_probs=155.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
+-..-+|-.++|+-|+|||+|+..+...++......+.++++....+.+.+..++++||||+|+++++...++|++++-+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34456899999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
.++|||++.+.++..+..|+...+....++..+++++||.|+..++.+..+++++++.++|+.|+++|+++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999887
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
..++.
T Consensus 167 e~akk 171 (215)
T KOG0097|consen 167 ETAKK 171 (215)
T ss_pred HHHHH
Confidence 66554
No 91
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=100.00 E-value=1.4e-33 Score=182.91 Aligned_cols=159 Identities=40% Similarity=0.581 Sum_probs=141.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
||+++|++|+|||||++++.+......+.++.. +........++..+.+.+||+||...+......+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777666 5555666677777899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
++++++++.+..|+..+..... ...|+++|+||+|+...+....+++..++...+++++++|++++.|+++++++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877664 689999999999998767778889999999999999999999999999999999986
Q ss_pred C
Q 030856 170 I 170 (170)
Q Consensus 170 i 170 (170)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 5
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=1.4e-33 Score=183.71 Aligned_cols=159 Identities=33% Similarity=0.542 Sum_probs=139.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++....+...+.++... ........++..+.+.+||+||+..+......+++++++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 48999999999999999999998887776666653 33455567778889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
|++++.+++.+..|+..+..... .+.|+++|+||+|+...+....++...++..++++++++|++++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 57999999999999765666777788888888999999999999999999999987
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
+
T Consensus 160 ~ 160 (164)
T cd04139 160 E 160 (164)
T ss_pred H
Confidence 5
No 93
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-36 Score=184.12 Aligned_cols=162 Identities=38% Similarity=0.639 Sum_probs=148.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC---------CeEEEEEEEecCChhhhhhhhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE---------DRTVRLQLWDTAGQERFRSLIPSY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~~~~ 78 (170)
.-++.+.+|++|+||||++.++..+++......+.++++.++.+.++ +..+.+++|||+|+++++++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999887653 235778999999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (170)
++.+-+++++||+++..+|-+++.|+.++..+. +++.-+++++||+|+.+.+.++.+++.++|+++++||+++||-+|.
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 999999999999999999999999999998764 3677799999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|+++..+.|..+
T Consensus 168 Nv~kave~Lldl 179 (219)
T KOG0081|consen 168 NVEKAVELLLDL 179 (219)
T ss_pred CHHHHHHHHHHH
Confidence 999988887764
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=2.4e-33 Score=183.26 Aligned_cols=155 Identities=21% Similarity=0.327 Sum_probs=125.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++..+.+. .+.|+.+.+... .. ...+.+.+||+||++.+..++..++.++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999877654 356776655432 22 24578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-----cCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++.+++.+..|+..+.... .++.|+++|+||+|+.. .+..++++..+.. ..+.++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 9999999999999988877765432 25789999999999854 2455666665432 23478999999999999
Q ss_pred HHHHHHHh
Q 030856 161 GCSPTIRR 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999975
No 95
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=186.70 Aligned_cols=161 Identities=37% Similarity=0.588 Sum_probs=151.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
+.+||+++|.+|+|||+|..++.+..+...|.|+.+ +.+.+...+++..+.+.|+||+|++++..+...++.+.|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 568999999999999999999999999999999998 8888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
||+++++.||+.+..++..+.+..+ ..+|+++|+||+|+...+.+..++++.++..++|+|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999955444 668999999999999989999999999999999999999999999999999998
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 161 ~r~ 163 (196)
T KOG0395|consen 161 VRE 163 (196)
T ss_pred HHH
Confidence 864
No 96
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=3.8e-34 Score=186.43 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=128.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeC
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 91 (170)
|+++|++|+|||||++++.+..+...+.|+.+.+. ..+++..+.+.+||+||++.++.++..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999999887777788877543 22344567899999999999999999999999999999999
Q ss_pred CChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH----HHHHHHHHhcCCeEEEeecCC------CCChHH
Q 030856 92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKA------GFNIKG 161 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~------~~~v~~ 161 (170)
+++.++...+.|+..+.... +++|+++|+||.|+...+.+.. ..+..++++.++.+++|||++ ++|+++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 99999999999988886543 6899999999999876654432 235666777788999999998 999999
Q ss_pred HHHHHHh
Q 030856 162 CSPTIRR 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998875
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=1e-32 Score=181.52 Aligned_cols=159 Identities=33% Similarity=0.536 Sum_probs=134.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
+.||+++|++|||||||++++.++.++..+.++....+. ..+..++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 368999999999999999999999888777787764443 3556777888999999999999988888889999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecC
Q 030856 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK 154 (170)
Q Consensus 89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~ 154 (170)
||++++++++.+. .|+..+.... ++.|+++|+||.|+... ..+...+++++++..+. ++++|||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999885 5777776543 57999999999998542 33456778888888875 89999999
Q ss_pred CCCChHHHHHHHHhh
Q 030856 155 AGFNIKGCSPTIRRL 169 (170)
Q Consensus 155 ~~~~v~~~~~~l~~~ 169 (170)
+|.|++++|++|.+.
T Consensus 159 ~~~~v~~lf~~l~~~ 173 (175)
T cd01870 159 TKEGVREVFEMATRA 173 (175)
T ss_pred cCcCHHHHHHHHHHH
Confidence 999999999999864
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=1.3e-33 Score=185.74 Aligned_cols=156 Identities=22% Similarity=0.324 Sum_probs=123.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+++||+++|.+|+|||||++++..+.+. .+.|+.+.+..... . ..+.+.+||+||++.+..++..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~--~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVT--Y--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999999876663 45677776554322 2 3478999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++....|+..+.... .++.|+++|+||.|+.+.. ..++..... +...+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999988888775432 3579999999999986432 222222221 2233467899999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|+||.+.
T Consensus 164 e~~~~l~~~ 172 (175)
T smart00177 164 EGLTWLSNN 172 (175)
T ss_pred HHHHHHHHH
Confidence 999999875
No 99
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.7e-32 Score=184.99 Aligned_cols=167 Identities=30% Similarity=0.568 Sum_probs=146.4
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|+.+.+...+||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|++.+...+..++.
T Consensus 1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~ 80 (215)
T PTZ00132 1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI 80 (215)
T ss_pred CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence 66778888999999999999999999999888888888899998888888777888899999999999999989999999
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
.++++++|||++++.++..+..|+..+.... .+.|+++++||+|+.+ +....+ ...+++..++.++++|+++|.|++
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999999887664 5799999999999854 333333 346777888999999999999999
Q ss_pred HHHHHHHhhC
Q 030856 161 GCSPTIRRLI 170 (170)
Q Consensus 161 ~~~~~l~~~i 170 (170)
+.|.+|++.+
T Consensus 158 ~~f~~ia~~l 167 (215)
T PTZ00132 158 KPFLWLARRL 167 (215)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 100
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=2e-32 Score=179.46 Aligned_cols=158 Identities=35% Similarity=0.554 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.. +........++..+.+.+||+||++++......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988766666665 344455567788889999999999988888888889999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc-----------ccCHHHHHHHHHhcCC-eEEEeecCCC
Q 030856 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR-----------QVSIEEGEAKSRELNV-MFIETSAKAG 156 (170)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~S~~~~ 156 (170)
|+++++++.... .|+..+.... .+.|+++|+||+|+.... .+..+++..++..+++ +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999988874 5666666554 489999999999987554 3457788888888888 9999999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
.|+++++++|.+.
T Consensus 159 ~gi~~l~~~i~~~ 171 (171)
T cd00157 159 EGVKEVFEEAIRA 171 (171)
T ss_pred CCHHHHHHHHhhC
Confidence 9999999999763
No 101
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=2.1e-32 Score=180.90 Aligned_cols=159 Identities=35% Similarity=0.482 Sum_probs=137.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
.||+++|.+|+|||||++++....+...+.++....+ ......++..+.+.+||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999887766667665333 344556677788999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
|+++.++++.+..|+..+..... .+.|+++|+||+|+...+.+..++...+++..+++++++||+++.|++++++++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877543 57899999999999766667777778888888899999999999999999999986
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 161 ~ 161 (180)
T cd04137 161 E 161 (180)
T ss_pred H
Confidence 5
No 102
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.1e-32 Score=183.35 Aligned_cols=158 Identities=32% Similarity=0.502 Sum_probs=132.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
||+++|.+|+|||||++++.+..+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666654 4445556677777899999999999999888999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCC-CcccCHHHHHHHHH-hcCCeEEEeecCCCCChHHHHHHHH
Q 030856 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
++++++++.+..|+..+..... .+.|+++|+||+|+.. .+.+..+...+... ..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877654 5799999999999865 35555555554443 4567899999999999999999998
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 160 ~~ 161 (198)
T cd04147 160 RQ 161 (198)
T ss_pred HH
Confidence 75
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.1e-32 Score=182.07 Aligned_cols=157 Identities=20% Similarity=0.315 Sum_probs=122.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.+||+++|.+|||||||++++..+.+. .+.|+.+.+... .. ...+.+.+||+||++.++.++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999877664 456777765432 22 34578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-----CCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++....++..+... ..++.|++|++||.|+.... ..++........ .+.+++|||++|+|++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999999888877776543 22579999999999986543 333333322211 2346689999999999
Q ss_pred HHHHHHHhhC
Q 030856 161 GCSPTIRRLI 170 (170)
Q Consensus 161 ~~~~~l~~~i 170 (170)
++|++|.+.+
T Consensus 168 e~~~~l~~~~ 177 (181)
T PLN00223 168 EGLDWLSNNI 177 (181)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 104
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=2e-32 Score=181.92 Aligned_cols=159 Identities=33% Similarity=0.574 Sum_probs=134.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
+.||+++|++|+|||||++++..+.++..+.++....+. .....++....+.+||++|++.+......++.++|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 468999999999999999999988777766666554433 3455677778899999999988887777788999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC----------CcccCHHHHHHHHHhcCC-eEEEeecCCC
Q 030856 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE----------KRQVSIEEGEAKSRELNV-MFIETSAKAG 156 (170)
Q Consensus 89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 156 (170)
||++++++++.+. .|+..+.... ++.|+++|+||+|+.+ .+.+..++++.+++..++ ++++|||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999986 6888887655 5799999999999854 345667888999999986 8999999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
.|++++|+++.+.
T Consensus 159 ~~v~~~f~~l~~~ 171 (187)
T cd04129 159 EGVDDVFEAATRA 171 (187)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999864
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=6.2e-33 Score=181.63 Aligned_cols=153 Identities=22% Similarity=0.372 Sum_probs=124.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
||+++|.+|||||||++++.+..+. .+.+|.+.+... .. ...+.+.+||+||++.+...+..++.++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~--~~--~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVET--VE--YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEE--EE--ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999988654 366776655532 22 245789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC------CeEEEeecCCCCChHHHH
Q 030856 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN------VMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~ 163 (170)
++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ....++.++++...+ +.+++|||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999988886543 24689999999999854 355666666664322 378899999999999999
Q ss_pred HHHHhhC
Q 030856 164 PTIRRLI 170 (170)
Q Consensus 164 ~~l~~~i 170 (170)
++|.+.+
T Consensus 154 ~~l~~~~ 160 (169)
T cd04158 154 DWLSRQL 160 (169)
T ss_pred HHHHHHH
Confidence 9998753
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=2.6e-33 Score=181.65 Aligned_cols=153 Identities=20% Similarity=0.351 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|.+|||||||++++..+.+. .+.|+.+.+... ... ..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877765 466777655432 222 3578999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHH----HhcCCeEEEeecCCCCChHHHHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
|++++.+++.+..|+..+... ...+.|+++++||.|+.+... ..+....+. ...++.++++||++|.|++++|+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 999999999998887776543 225689999999999854322 112223332 12344678999999999999999
Q ss_pred HHHh
Q 030856 165 TIRR 168 (170)
Q Consensus 165 ~l~~ 168 (170)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 9975
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=1.6e-32 Score=181.82 Aligned_cols=159 Identities=23% Similarity=0.344 Sum_probs=126.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe-CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
..+||+++|++|||||||++++....+... .++.+.+........ ++..+.+.+|||||++.+..++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998876543 566665555544443 346688999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHh------cCCeEEEeecCCCCCh
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------LNVMFIETSAKAGFNI 159 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~v 159 (170)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+... ...++...+... .+++++++||++|.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 99999999999998888887765432 57999999999998542 333444444321 1357899999999999
Q ss_pred HHHHHHHHhh
Q 030856 160 KGCSPTIRRL 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
++++++|.+.
T Consensus 159 ~~l~~~l~~~ 168 (183)
T cd04152 159 QEGLEKLYEM 168 (183)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=2.6e-32 Score=179.37 Aligned_cols=156 Identities=22% Similarity=0.339 Sum_probs=124.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.++|+++|++|+|||||++++.+... ..+.++.+... ..+..+ .+.+.+||+||++.+..++..++.++|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 45679999999999999999999998754 34456655333 233333 47899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCCCCh
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNI 159 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v 159 (170)
++|||++++.+++....|+..+... ...+.|+++|+||+|+.+.. ..++.+.... ..+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 9999999999999988888777543 23679999999999986533 4455555543 34679999999999999
Q ss_pred HHHHHHHHh
Q 030856 160 KGCSPTIRR 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+++|+++++
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999875
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=7.8e-33 Score=182.96 Aligned_cols=156 Identities=19% Similarity=0.325 Sum_probs=121.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+++||+++|++|||||||++++..+.+.. +.||.+.++.. ... ..+.+.+||+||++.++.++..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--VEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456999999999999999999998776653 56776655432 222 4578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++....++..+... ...+.|+++|+||.|+.+.. ..++..... +...+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999988877776443 22568999999999985422 222222211 1223467799999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|++|.+.
T Consensus 168 e~~~~l~~~ 176 (182)
T PTZ00133 168 EGLDWLSAN 176 (182)
T ss_pred HHHHHHHHH
Confidence 999999875
No 110
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=100.00 E-value=1e-31 Score=179.29 Aligned_cols=149 Identities=21% Similarity=0.336 Sum_probs=128.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-----CeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
+||+++|.+|+|||||++++..+.+...+.+|.+.++......++ +..+.+.+||++|++.+..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888998877776666553 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-------------------CCCCeEEEEEeCCCCCCCcccCHH----HHHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTER-------------------GSDVIIVLVGNKTDLVEKRQVSIE----EGEAKS 141 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~vvv~nK~D~~~~~~~~~~----~~~~~~ 141 (170)
+|+|||++++++|+.+..|+..+.... +.++|+++|+||.|+.+++.+..+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987642 247999999999999776655543 355678
Q ss_pred HhcCCeEEEeecCCCCC
Q 030856 142 RELNVMFIETSAKAGFN 158 (170)
Q Consensus 142 ~~~~~~~~~~S~~~~~~ 158 (170)
++.+++.++.++.++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88999999999886654
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.6e-31 Score=173.53 Aligned_cols=157 Identities=25% Similarity=0.368 Sum_probs=122.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|.+|+|||||++++..+.++..+.++.. .+ .......+..+++.+|||||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999888655333222 22 233345567789999999999888888888889999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HHHHHHHHHhcC--CeEEEeecCCCCChHHHHH
Q 030856 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRELN--VMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~ 164 (170)
|++++++++.+. .|+..+.... .+.|+++|+||+|+.+.+... .+....++..++ .++++|||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 6777776554 589999999999997654431 233333344433 3899999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
.+.+.
T Consensus 158 ~~~~~ 162 (166)
T cd01893 158 YAQKA 162 (166)
T ss_pred HHHHH
Confidence 98875
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=6e-32 Score=176.58 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=121.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
+|+++|++|||||||++++.++ +...+.++.+.... .+.. ..+.+.+||+||+..++.++..++.++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 5899999999999999999977 55666777765432 3333 34789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccC----HHHHHHHHHhc--CCeEEEeecCCC------C
Q 030856 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS----IEEGEAKSREL--NVMFIETSAKAG------F 157 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~----~~~~~~~~~~~--~~~~~~~S~~~~------~ 157 (170)
++++.+++.+..|+..+..... .+.|+++|+||.|+...+... ......++.+. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999999999998876533 579999999999987654221 11122334333 357889999998 8
Q ss_pred ChHHHHHHHHh
Q 030856 158 NIKGCSPTIRR 168 (170)
Q Consensus 158 ~v~~~~~~l~~ 168 (170)
|+++.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=3.3e-31 Score=174.21 Aligned_cols=154 Identities=22% Similarity=0.371 Sum_probs=121.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
+.++|+++|++|+|||||++++..+.+.. +.++.+.+... ...+ ...+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999877654 45666654432 2232 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHH-HHHH----HhcCCeEEEeecCCCCChHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEG-EAKS----RELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~S~~~~~~v~~ 161 (170)
|+|+++++++.....++..+..... .+.|+++++||+|+.+. ...++. +.+. ...++++++|||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 9999999999888777777654432 57999999999998642 233332 2222 23456899999999999999
Q ss_pred HHHHHHh
Q 030856 162 CSPTIRR 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+|++|++
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999976
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=9.7e-32 Score=174.78 Aligned_cols=152 Identities=17% Similarity=0.250 Sum_probs=118.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+|+++|++|||||||++++.+... ...+.++.+..... .. ...+++.+||+||.+.+..++..+++++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 45566776644322 22 34578999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCCCChHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~ 161 (170)
|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++...... ...+.++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888888775532 25799999999999865322 222222211 1234689999999999999
Q ss_pred HHHHHHh
Q 030856 162 CSPTIRR 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999975
No 115
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=3e-32 Score=177.12 Aligned_cols=160 Identities=33% Similarity=0.535 Sum_probs=145.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe-CCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
...+|+++||+.++|||+|+-.+..+.++..|.||.. +-+...+.+ ++..+.+.+|||+|+++|..++...+..+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999998 666677778 49999999999999999999888889999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEe
Q 030856 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET 151 (170)
Q Consensus 86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (170)
++||++.++++|+++ ..|+.++..++ +++|+++||+|.|+... ..+..++++.++++.|+ .|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999997 88999998887 89999999999998732 35778999999999996 99999
Q ss_pred ecCCCCChHHHHHHHHh
Q 030856 152 SAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 152 S~~~~~~v~~~~~~l~~ 168 (170)
||+++.|++++|+..+.
T Consensus 160 Sa~tq~~v~~vF~~a~~ 176 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIR 176 (198)
T ss_pred hhhhhCCcHHHHHHHHH
Confidence 99999999999998765
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.98 E-value=1.2e-30 Score=173.82 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=125.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.++.+|+++|++|||||||++++.+..+. .+.++.+... ..+.+++ ..+.+||+||+..+...+..++.++|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999987663 4555555433 2333443 67899999999998888899999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHh----------------cCCeEE
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----------------LNVMFI 149 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 149 (170)
+|+|.+++++++....|+..+..... .+.|+++++||+|+.. .+..++.+..... ..+.++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999999888888887765432 5799999999999854 4555666666543 224799
Q ss_pred EeecCCCCChHHHHHHHHhhC
Q 030856 150 ETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~i 170 (170)
+|||++|+|++++|++|.+.+
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeEecCCCChHHHHHHHHhhC
Confidence 999999999999999999865
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.98 E-value=5.7e-31 Score=170.86 Aligned_cols=152 Identities=21% Similarity=0.345 Sum_probs=118.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
+|+++|++|+|||||++++.++.+.. +.++.+.+... +.. +..+.+.+||+||+..+...+..++.++|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999987753 35665544322 222 245789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHH------HHHHhcCCeEEEeecCCCCChHHHH
Q 030856 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGE------AKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
++++.++.....|+..+.+... .+.|+++|+||+|+.... ..++.. .++...++++++|||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999999998888887765432 579999999999985422 222222 1222345579999999999999999
Q ss_pred HHHHh
Q 030856 164 PTIRR 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99975
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.98 E-value=1.1e-30 Score=170.73 Aligned_cols=153 Identities=22% Similarity=0.370 Sum_probs=119.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
+|+++|++|+|||||++++.+... ...+.++.+.+... +..+ ...+.+||+||++.+..++..++.++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999986432 23344555544432 2333 4689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-------cCCeEEEeecCCC
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKAG 156 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~ 156 (170)
+++|+|+++++++.....|+..+.+.. ..+.|+++++||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988998888888776543 257999999999998553 333444444332 3458999999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
.|+++++++|+++
T Consensus 155 ~gv~e~~~~l~~~ 167 (167)
T cd04160 155 TGVREGIEWLVER 167 (167)
T ss_pred cCHHHHHHHHhcC
Confidence 9999999999763
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.97 E-value=4.8e-31 Score=170.94 Aligned_cols=151 Identities=20% Similarity=0.310 Sum_probs=114.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
||+++|++++|||||++++..+.+.. +.++.+.+... .. ....++.+||+||++.+..++..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVET--VT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776643 45555544332 22 244789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCcccCHHHHHH-HH----HhcCCeEEEeecCCCCChHHHHH
Q 030856 91 VASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-KS----RELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
++++.++.....++..+.+ ....+.|+++|+||+|+.+.. ...+... +. ...+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998888777666655433 223579999999999986433 2222222 21 12235799999999999999999
Q ss_pred HHHh
Q 030856 165 TIRR 168 (170)
Q Consensus 165 ~l~~ 168 (170)
+|++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9986
No 120
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=2.5e-30 Score=169.93 Aligned_cols=158 Identities=24% Similarity=0.354 Sum_probs=127.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..++.+|+++|+.||||||+++++..+... ...||.+.+..... ..+ +.+.+||.+|+..++..|+.|+.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~--~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIK--YKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEE--ETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceee--eCc--EEEEEEeccccccccccceeecccccee
Confidence 367899999999999999999999876543 35677665554433 333 6789999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHH------hcCCeEEEeecCCCCC
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFN 158 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~S~~~~~~ 158 (170)
|||+|.++++.+......+..+..... .+.|+++++||.|+.+. ...++...... ...+.++.||+.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999999998888887766432 67999999999998653 33444444332 2345799999999999
Q ss_pred hHHHHHHHHhhC
Q 030856 159 IKGCSPTIRRLI 170 (170)
Q Consensus 159 v~~~~~~l~~~i 170 (170)
+.+.++||.+.|
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=1.5e-30 Score=168.55 Aligned_cols=151 Identities=22% Similarity=0.315 Sum_probs=119.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
||+++|.+|+|||||++++.+... ..+.++.+..... .... ...+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 3445555543332 2232 4689999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCCCChHHHHH
Q 030856 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
+++++++.....|+..+.... ..+.|+++|+||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999988887776543 3679999999999986543 2333333332 2346899999999999999999
Q ss_pred HHHh
Q 030856 165 TIRR 168 (170)
Q Consensus 165 ~l~~ 168 (170)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9975
No 122
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=8.5e-30 Score=167.16 Aligned_cols=138 Identities=67% Similarity=1.008 Sum_probs=126.2
Q ss_pred CCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc
Q 030856 32 DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER 111 (170)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 111 (170)
+.+.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34567788999999988888888999999999999999999999999999999999999999999999999999987766
Q ss_pred CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 112 ~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.++.|+++|+||+|+...+.+..+++..++..+++.+++|||++|.|++++|++|++.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~ 140 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAK 140 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999998777788889999999999999999999999999999999875
No 123
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=7.1e-30 Score=178.26 Aligned_cols=142 Identities=21% Similarity=0.371 Sum_probs=123.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-------------CeEEEEEEEecCChhhh
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-------------DRTVRLQLWDTAGQERF 71 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~ 71 (170)
++...+||+++|..|||||||++++..+.+...+.++.+.++....+.++ +..+.+.|||++|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 35567999999999999999999999998888888999888776666554 24688999999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC------------CCCeEEEEEeCCCCCCCc---c---cC
Q 030856 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG------------SDVIIVLVGNKTDLVEKR---Q---VS 133 (170)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~vvv~nK~D~~~~~---~---~~ 133 (170)
..++..+++++|++|+|||++++++++.+..|+..+..... .++|++||+||+|+...+ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987631 358999999999997543 2 35
Q ss_pred HHHHHHHHHhcCC
Q 030856 134 IEEGEAKSRELNV 146 (170)
Q Consensus 134 ~~~~~~~~~~~~~ 146 (170)
.++++++|+.+++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7999999999886
No 124
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-32 Score=173.66 Aligned_cols=168 Identities=35% Similarity=0.546 Sum_probs=157.4
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|.+..-+..+|++|+|..++||||++++++.+-+...+..+++.++...++.+....+++.+||++|++++......|++
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 33444567899999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
++.+.++||+.+|+.+|+....|.+.+.... ..+|.++|-||+|+.+..++..++.+.+++..++.++-+|+++..|+.
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM 170 (246)
T ss_pred cccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence 9999999999999999999999999998877 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|.+|++.
T Consensus 171 ~vF~YLaeK 179 (246)
T KOG4252|consen 171 HVFAYLAEK 179 (246)
T ss_pred HHHHHHHHH
Confidence 999999864
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.9e-29 Score=167.15 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=121.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|.+|+|||||++++.++.+. .+.++.+.... ....+ .+++.+||+||+..+...+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999987653 33444443222 22233 367899999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh------------cCCeEEEeec
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA 153 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S~ 153 (170)
+|+|+++++++.....++..+.... ..+.|+++|+||+|+.. .++.++..+.... ....+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999999988888877765432 25789999999999853 3444554443311 2336999999
Q ss_pred CCCCChHHHHHHHHhhC
Q 030856 154 KAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 154 ~~~~~v~~~~~~l~~~i 170 (170)
+++.|++++++||.+++
T Consensus 168 ~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 168 VRRMGYGEGFKWLSQYI 184 (184)
T ss_pred ccCCChHHHHHHHHhhC
Confidence 99999999999998764
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=4.4e-29 Score=161.42 Aligned_cols=151 Identities=25% Similarity=0.351 Sum_probs=120.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeC
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 91 (170)
|+++|++|+|||||++++.+..+...+.++.+.+.... ..+ ...+.+||+||...+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~--~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKV--TKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEE--EEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 79999999999999999999988888888877665432 222 37899999999999999999999999999999999
Q ss_pred CChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChHHHHHH
Q 030856 92 ASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++++++.....|+..+.... ..+.|+++|+||+|+.+.... .+..... ...+++++++|++++.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 99988888877777765432 257899999999998654322 2221111 223468999999999999999999
Q ss_pred HHh
Q 030856 166 IRR 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 976
No 127
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.97 E-value=8.1e-29 Score=153.88 Aligned_cols=159 Identities=19% Similarity=0.308 Sum_probs=129.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
.+++++|.++|..|+||||+++++.+.. .+...|+.+.+..... . ..+++.+||.+|+...++.|+.|+..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~--~--~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLE--Y--KGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEE--e--cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4568999999999999999999999876 3444666664443333 3 457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCccc---C-HHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQV---S-IEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~---~-~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
|+|+|.+++..++.....+..+..... .+.|+++++||.|+...-.. . ....+.+++..+++++.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 999999999999998888887766443 57899999999998743221 1 123455667889999999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+-+.||++.
T Consensus 168 ~gidWL~~~ 176 (185)
T KOG0073|consen 168 EGIDWLCDD 176 (185)
T ss_pred HHHHHHHHH
Confidence 999999864
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.97 E-value=1.6e-28 Score=162.20 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=113.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------CCCCccc------eeeeeeeEEEE--Ee---CCeEEEEEEEecCChhhhh
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK-------FDNTYQA------TIGIDFLSKTM--YL---EDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~ 72 (170)
+|+++|.+++|||||++++++.. ....+.+ +.+.++..... .+ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998742 1111111 11222222222 12 5567889999999999999
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC---eEE
Q 030856 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MFI 149 (170)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 149 (170)
..+..++..+|++|+|+|++++.+.+....|.... ..++|+++|+||+|+.+.+ ..+...++++..++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876666665554322 2468999999999985432 12334456666666 489
Q ss_pred EeecCCCCChHHHHHHHHhhC
Q 030856 150 ETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~i 170 (170)
++||++|.|+++++++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998754
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.97 E-value=1.3e-28 Score=160.95 Aligned_cols=156 Identities=16% Similarity=0.176 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh---------hhhhhhhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYIR 80 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~ 80 (170)
.+|+++|.+|+|||||++++.+........+..+.+...... .....++.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999887643322222222222222 2234789999999974211 01111123
Q ss_pred CCcEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 81 DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
.+|++++|+|++++.++ +....|+..+.... .+.|+++|+||+|+.+.+.+.. .+.+....+.++++|||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 46899999999987653 55567777776543 4799999999999866544322 4555666677999999999999
Q ss_pred hHHHHHHHHhhC
Q 030856 159 IKGCSPTIRRLI 170 (170)
Q Consensus 159 v~~~~~~l~~~i 170 (170)
++++++++.+.|
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.97 E-value=1.1e-28 Score=161.54 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=112.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhhhhhh---hcCCc
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS 83 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d 83 (170)
+|+++|.+|+|||||++++.+........+..+.+........++ ...+.+|||||..+ ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997654211112112222222222222 24789999999632 22223333 44699
Q ss_pred EEEEEEeCCCh-hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-cCCeEEEeecCCCCCh
Q 030856 84 VAVVVYDVASR-QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159 (170)
Q Consensus 84 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v 159 (170)
++++|+|++++ ++++.+..|.+.+..... .+.|+++|+||+|+.+.... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 789998888888876542 46899999999998665443 3344445555 3789999999999999
Q ss_pred HHHHHHHHhhC
Q 030856 160 KGCSPTIRRLI 170 (170)
Q Consensus 160 ~~~~~~l~~~i 170 (170)
+++|++|.+++
T Consensus 160 ~~l~~~i~~~~ 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998864
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.96 E-value=1e-27 Score=154.84 Aligned_cols=158 Identities=27% Similarity=0.407 Sum_probs=129.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
.+||+++|.+|+|||||++++.....+..+.++.+.+........++..+.+.+||+||+..+...+..+...++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999987777778888787777677777778899999999999999899999999999999
Q ss_pred EeCCCh-hhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 89 YDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 89 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||.++.|+++++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998876 6666654 66666665544489999999999986544 33344444444556689999999999999999987
Q ss_pred H
Q 030856 167 R 167 (170)
Q Consensus 167 ~ 167 (170)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.96 E-value=8.7e-28 Score=157.81 Aligned_cols=157 Identities=20% Similarity=0.302 Sum_probs=117.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.++|+++|++|+|||||++++.+.... .+.++.+.+.. .+...+ ..+.+||+||...+...+..+++++|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345799999999999999999999987553 33455553332 222333 5789999999998888888999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-----CCeEEEeecCCCCCh
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIETSAKAGFNI 159 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~v 159 (170)
++|+|.+++.++.....++..+.... ..+.|+++++||+|+.+... .++..+..... ..+++++||++|+|+
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGL 163 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCH
Confidence 99999999888888877776665432 25799999999999854332 22222211111 125789999999999
Q ss_pred HHHHHHHHhh
Q 030856 160 KGCSPTIRRL 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|+||++.
T Consensus 164 ~~~~~~l~~~ 173 (173)
T cd04155 164 QEGMNWVCKN 173 (173)
T ss_pred HHHHHHHhcC
Confidence 9999999863
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.96 E-value=4.3e-28 Score=163.25 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=113.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh---------hhhhhhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPS 77 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 77 (170)
...++|+++|++|||||||++++.+........+..+.+........++. ..+.+|||||... +.... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 34589999999999999999999987643222222222333333333332 3789999999632 12111 2
Q ss_pred hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (170)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+..... ......+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 35689999999999998888877777766665544578999999999986543321 3455567799999999999
Q ss_pred ChHHHHHHHHhhC
Q 030856 158 NIKGCSPTIRRLI 170 (170)
Q Consensus 158 ~v~~~~~~l~~~i 170 (170)
|+++++++|.+.|
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998865
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.96 E-value=6.7e-28 Score=171.68 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=117.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhh---hhhhhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSL---IPSYIRDS 82 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~ 82 (170)
-.|+++|.|++|||||++++...+......+.++.......+.+. ...++.+||+||..+ ...+ ....++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 468999999999999999999865432222333333333333332 224689999999632 1122 23345679
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
+++++|+|++++++++.+..|..++..+.. .+.|+++|+||+|+........+..+.++...+.+++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988889999999888877643 478999999999987655444445555666677899999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 318 eL~~~L~~~ 326 (335)
T PRK12299 318 ELLRALWEL 326 (335)
T ss_pred HHHHHHHHH
Confidence 999999875
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.96 E-value=1.5e-27 Score=155.22 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=105.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC---CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
+.|+++|.+|+|||||++++.+.. .+..+.++.+.+.........+ ...+.+|||||++.+......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 468999999999999999999643 2222233334343333344432 357999999999988777777888999999
Q ss_pred EEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHHHHHHHHHh---cCCeEEEeecCCCCC
Q 030856 87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRE---LNVMFIETSAKAGFN 158 (170)
Q Consensus 87 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~S~~~~~~ 158 (170)
+|+|+++ +++.+.+. .+.. . ...|+++++||+|+.+... ...++..+..+. .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~-~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILEL-L-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHH-h-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999986 33333222 2221 1 1248999999999865421 112334444444 467999999999999
Q ss_pred hHHHHHHHHh
Q 030856 159 IKGCSPTIRR 168 (170)
Q Consensus 159 v~~~~~~l~~ 168 (170)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 136
>PRK04213 GTP-binding protein; Provisional
Probab=99.96 E-value=3.9e-28 Score=163.11 Aligned_cols=157 Identities=24% Similarity=0.278 Sum_probs=108.2
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC-----------hh
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QE 69 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~ 69 (170)
|+..++...++|+++|.+|+|||||++++.+..+.....++.+.. ....... .+.+||||| ++
T Consensus 1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~ 74 (201)
T PRK04213 1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQE 74 (201)
T ss_pred CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHH
Confidence 666677778999999999999999999999887655555544332 2222222 589999999 45
Q ss_pred hhhhhhhhhhc----CCcEEEEEEeCCChhhH----Hh------HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH
Q 030856 70 RFRSLIPSYIR----DSSVAVVVYDVASRQSF----LN------TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 70 ~~~~~~~~~~~----~~d~~i~v~d~~~~~~~----~~------~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~ 135 (170)
.++..+..++. .++++++|+|.++...+ .. ....+..+. ..++|+++|+||+|+.+.+ .+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~ 148 (201)
T PRK04213 75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DE 148 (201)
T ss_pred HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HH
Confidence 56665555554 45788888887643211 00 011112222 2479999999999986543 34
Q ss_pred HHHHHHHhcCC---------eEEEeecCCCCChHHHHHHHHhhC
Q 030856 136 EGEAKSRELNV---------MFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 136 ~~~~~~~~~~~---------~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
...+++...++ +++++||++| |+++++++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 45566666654 5899999999 9999999998753
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.96 E-value=7.1e-28 Score=153.47 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=100.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh-----hhhhhhhhhhcCCcEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA 85 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~ 85 (170)
||+++|++|+|||||++++.+... .+.++.+.++ .-.+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY------------NDGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE------------cCeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 799999999999999999998764 2233332221 11689999973 233333 347899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~ 164 (170)
++|||++++.++.. ..|.... ..|+++|+||+|+.+ +....++++++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988765 3343321 249999999999864 34456677788888777 899999999999999999
Q ss_pred HHH
Q 030856 165 TIR 167 (170)
Q Consensus 165 ~l~ 167 (170)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 985
No 138
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-28 Score=154.80 Aligned_cols=160 Identities=19% Similarity=0.318 Sum_probs=132.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..++.+|+++|-.++||||++.++..++.... .||.+..+..... +.+++++||.+|++.++..|+.|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 56789999999999999999999998877655 8888877766554 358899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (170)
|||+|.+|++.+...+..+..+..+.. .+.|+++++||.|+..+... .......-.+.+...+-.|+|.+|+|+.+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 999999999999999888888877665 68999999999998765442 22222222233456889999999999999
Q ss_pred HHHHHHhhC
Q 030856 162 CSPTIRRLI 170 (170)
Q Consensus 162 ~~~~l~~~i 170 (170)
.++|+.+.+
T Consensus 169 gl~wl~~~~ 177 (181)
T KOG0070|consen 169 GLDWLSNNL 177 (181)
T ss_pred HHHHHHHHH
Confidence 999998753
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=157.63 Aligned_cols=162 Identities=40% Similarity=0.573 Sum_probs=133.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
..+||+++|++|+|||||++++.+..+...+.++.+..+........+..+++.+|||+|+++++..+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999998888888877777777666668899999999999999999999999999999
Q ss_pred EEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhc---CCeEEEe
Q 030856 88 VYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSREL---NVMFIET 151 (170)
Q Consensus 88 v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 151 (170)
+||.++ ..+.+....|...+........|+++++||+|+...+ ..........+... ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999998 4555666888888887766679999999999998653 23333333333332 3358999
Q ss_pred ecC--CCCChHHHHHHHHhh
Q 030856 152 SAK--AGFNIKGCSPTIRRL 169 (170)
Q Consensus 152 S~~--~~~~v~~~~~~l~~~ 169 (170)
|++ .+.++.++|..+.+.
T Consensus 164 s~~~~~~~~v~~~~~~~~~~ 183 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRK 183 (219)
T ss_pred ecccCCCcCHHHHHHHHHHH
Confidence 999 999999999888753
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.96 E-value=1.3e-26 Score=148.51 Aligned_cols=154 Identities=45% Similarity=0.731 Sum_probs=124.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC
Q 030856 14 FLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 14 i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 92 (170)
++|++|+|||||++++.+... .....++. .+.........+....+.+||+||...+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 45555555 6777777776677889999999999988888888999999999999999
Q ss_pred ChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCCcccCHHH-HHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 93 SRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
++.++.....|. .........+.|+++++||+|+.......... ........+.+++++|+.++.|+++++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 999888888773 33333444789999999999987544433322 44555666789999999999999999999864
No 141
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.95 E-value=1e-26 Score=143.07 Aligned_cols=162 Identities=23% Similarity=0.298 Sum_probs=137.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC--CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-hhhhhhhhcCCcE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSSV 84 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~ 84 (170)
+..||+++|..++|||++++.+..+... ..+.+|...-+.....+..+..-.++++||.|.... ..+-++|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 5689999999999999999999987654 455677764444444455566678999999997666 7788999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
+++||+..+++||+.+.-.-..+.+... ..+|+++++||+|+.+++++..+.++.||++-.+..+++++.+..++-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999987655555555443 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
.+++..
T Consensus 168 ~~l~~r 173 (198)
T KOG3883|consen 168 TYLASR 173 (198)
T ss_pred HHHHHh
Confidence 998865
No 142
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.95 E-value=2e-27 Score=151.03 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=105.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh------hhhhhhh--cC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYI--RD 81 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~ 81 (170)
++|+++|.||+|||||+|+|++.+......|..+.+.....+...+ ..+.++|+||..... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999886644556666676666666666 568999999943322 2223333 58
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (170)
.|+++.|.|+++.+.-..+ ..++.. .+.|+++++||+|....+.... ....+++..|++++++||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999875432222 223332 3799999999999876555432 46778888999999999999999999
Q ss_pred HHHHH
Q 030856 162 CSPTI 166 (170)
Q Consensus 162 ~~~~l 166 (170)
++++|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.95 E-value=2.8e-26 Score=149.86 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=107.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
.|+++|.+|+|||||++++....+...+.++.+.+......... +....+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887765444444433333333332 13568999999999999888888899999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH-HHHHHHHH------hcCCeEEEeecCCCCChHHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-EEGEAKSR------ELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~S~~~~~~v~~~ 162 (170)
|+++....+. ...+..+.. .+.|+++|+||+|+........ .....+.. ..+++++++|+++++|++++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9987432111 111222222 4689999999999864321111 11111111 12368999999999999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
+++|.+.
T Consensus 158 ~~~l~~~ 164 (168)
T cd01887 158 LEAILLL 164 (168)
T ss_pred HHHHHHh
Confidence 9999864
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.95 E-value=3.1e-26 Score=163.03 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=114.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hhhhhhh---hcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPSY---IRDS 82 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~ 82 (170)
-.|+++|.|++|||||++++..........+.++.......+...+ ..++.+||+||..+- ..+...+ +.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4689999999999999999998654322222222233333333332 357899999996421 1233333 4579
Q ss_pred cEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856 83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 83 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (170)
+++++|+|+++. ++++.+..|..++..+.. .+.|+++|+||+|+..... ..+..+.+++..+.+++++||++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 678888888777766532 4789999999999865433 2344556666778899999999999
Q ss_pred ChHHHHHHHHhhC
Q 030856 158 NIKGCSPTIRRLI 170 (170)
Q Consensus 158 ~v~~~~~~l~~~i 170 (170)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.95 E-value=2.4e-26 Score=164.97 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=111.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh---------hhhhhhhhhh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI 79 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~ 79 (170)
.++|+++|.+|+|||||+|++.+........+..+.+.....+..++. ..+.+|||+|.. .+... ...+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 489999999999999999999997654333333344555555555332 478999999962 22222 2347
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.....+ .... ....+++++||++|.|+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCCCCH
Confidence 89999999999999888877766665555544357899999999998643221 1111 22346899999999999
Q ss_pred HHHHHHHHhhC
Q 030856 160 KGCSPTIRRLI 170 (170)
Q Consensus 160 ~~~~~~l~~~i 170 (170)
++++++|.+.+
T Consensus 341 ~eL~~~I~~~~ 351 (351)
T TIGR03156 341 DLLLEAIAERL 351 (351)
T ss_pred HHHHHHHHhhC
Confidence 99999998754
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.95 E-value=3.7e-26 Score=147.85 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=110.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh------hhhhhhc--CCcEE
Q 030856 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYIR--DSSVA 85 (170)
Q Consensus 14 i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~ 85 (170)
++|.+|+|||||++++.+........+..+.+.....+..++ ..+.+|||||...+.. +...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998865544455555555555555554 4789999999876554 2455554 89999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|+|.++++... .++..+.. .+.|+++|+||+|+.+...+..+ .+.++...+++++++|+.++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998765432 33333332 36899999999999765544433 45677778899999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 9864
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.94 E-value=4.8e-26 Score=152.13 Aligned_cols=147 Identities=17% Similarity=0.236 Sum_probs=102.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--CCCCCCc------------cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 75 (170)
.+|+++|.+++|||||+++++. +.+...+ .++.+.+.......+.+....+.+|||||++++....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 3333221 1223333444444444556789999999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHH-------hcCCe
Q 030856 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM 147 (170)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 147 (170)
..++.++|++++|+|+++.. +.....++..+.. .++|+++|+||+|+...+.. ..++...+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998732 2222333333322 46899999999998653321 2334444432 23679
Q ss_pred EEEeecCCCCChH
Q 030856 148 FIETSAKAGFNIK 160 (170)
Q Consensus 148 ~~~~S~~~~~~v~ 160 (170)
++++||++|.|++
T Consensus 159 iv~~Sa~~g~~~~ 171 (194)
T cd01891 159 VLYASAKNGWASL 171 (194)
T ss_pred EEEeehhcccccc
Confidence 9999999997764
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.94 E-value=4.6e-26 Score=149.90 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=109.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hhh---hhhhhcCCcEEE
Q 030856 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSL---IPSYIRDSSVAV 86 (170)
Q Consensus 14 i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~~i 86 (170)
++|++|+|||||++++.+........+..+.+........++ ...+.+||+||.... ..+ ....++++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998864211122222222222333331 356899999996321 122 234577899999
Q ss_pred EEEeCCCh------hhHHhHHHHHHHHHHhcC-------CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeec
Q 030856 87 VVYDVASR------QSFLNTSKWIDEVRTERG-------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 87 ~v~d~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 153 (170)
+|+|++++ .+++....|...+..... .+.|+++|+||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 577787777777765432 37999999999998765444333233445556678999999
Q ss_pred CCCCChHHHHHHHHhhC
Q 030856 154 KAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 154 ~~~~~v~~~~~~l~~~i 170 (170)
+++.|++++++++.+.+
T Consensus 160 ~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 160 KTEEGLDELIRAIYELL 176 (176)
T ss_pred hhhcCHHHHHHHHHhhC
Confidence 99999999999998764
No 149
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.94 E-value=3.9e-27 Score=143.94 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=126.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
++.+.++|-.++|||||+|....+.+.....|+.+.+.... ....+.+.+||.||++.++++|+.|.+++++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 57899999999999999999999888888889988766553 34567899999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc--------CCeEEEeecCCCCCh
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--------NVMFIETSAKAGFNI 159 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~S~~~~~~v 159 (170)
+|+++++.+...+..+..+..... .++|+++++||.|+.++-. . ..+..+. .+-.|.+|+++..|+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~---~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--K---IALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--H---HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 999999988888887777665544 7899999999999865322 1 2223333 346899999999999
Q ss_pred HHHHHHHHhh
Q 030856 160 KGCSPTIRRL 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+-+..||++.
T Consensus 171 d~~~~Wli~h 180 (186)
T KOG0075|consen 171 DITLDWLIEH 180 (186)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 150
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=142.03 Aligned_cols=163 Identities=23% Similarity=0.507 Sum_probs=142.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
.+...++|.++|++..|||||+-++.+..++.++..+.+.++..+++.+.+..+.+.|||.+|++++..+.....+.+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 44567999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-----cccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-----RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
++|+||++.++++..+..|+++.+......+| ++|++|.|..-. ++.-..+++.+|+..+.+.+.||+..+.|+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 99999999999999999999998776654455 567999997421 222245678888889999999999999999
Q ss_pred HHHHHHHHh
Q 030856 160 KGCSPTIRR 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
..+|.-+.-
T Consensus 175 ~KIFK~vlA 183 (205)
T KOG1673|consen 175 QKIFKIVLA 183 (205)
T ss_pred HHHHHHHHH
Confidence 999987654
No 151
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=2.6e-25 Score=155.33 Aligned_cols=152 Identities=17% Similarity=0.115 Sum_probs=103.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh--------hhhhhhhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSYIRD 81 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 81 (170)
+|+++|.+|+|||||+|+|.+.... .+..+..+.+........++ .++.+|||||..... .....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999998754 22222222222222222222 468999999965321 123445789
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 030856 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 160 (170)
+|++++|+|++++.+.+ ..++..+.. .+.|+++|+||+|+...... .+....++...+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876554 333333332 36899999999998643222 2344455555555 89999999999999
Q ss_pred HHHHHHHhhC
Q 030856 161 GCSPTIRRLI 170 (170)
Q Consensus 161 ~~~~~l~~~i 170 (170)
+++++|.+.+
T Consensus 154 ~L~~~l~~~l 163 (270)
T TIGR00436 154 FLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 152
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=5e-25 Score=157.89 Aligned_cols=155 Identities=21% Similarity=0.312 Sum_probs=105.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-hhh-------hh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSL-------IP 76 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~-------~~ 76 (170)
..+..+|+++|.+|+|||||+|++.+..+.. +..+..+.+.....+..++ .++.+|||||..+. ..+ ..
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 3456799999999999999999999887642 1222222233333344444 46899999997432 211 12
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeec
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSA 153 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~ 153 (170)
..+.++|++++|+|..+ ++.... .|+..+.. .+.|.++|+||+|+... ...++.+.+...+ ..++++||
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 34679999999999764 444543 34444433 24677889999998543 2345555555544 58999999
Q ss_pred CCCCChHHHHHHHHhhC
Q 030856 154 KAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 154 ~~~~~v~~~~~~l~~~i 170 (170)
++|.|+++++++|.+.+
T Consensus 199 ktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 199 LSGKNIDGLLEYITSKA 215 (339)
T ss_pred cCccCHHHHHHHHHHhC
Confidence 99999999999998753
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.94 E-value=1.6e-25 Score=138.47 Aligned_cols=114 Identities=32% Similarity=0.560 Sum_probs=88.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
||+++|++|||||||++++.+.... ..+.+..+.+..............+.+||++|.+.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22233334444444556667776799999999998888888889999999999
Q ss_pred EeCCChhhHHhHHHH---HHHHHHhcCCCCeEEEEEeCCC
Q 030856 89 YDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvv~nK~D 125 (170)
||++++++++.+..+ +..+.... .++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999997544 55555443 5699999999998
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.94 E-value=5.4e-25 Score=162.08 Aligned_cols=148 Identities=21% Similarity=0.216 Sum_probs=111.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh--------hhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 78 (170)
..++|+++|++|+|||||+|++.+.... ....+..+.+.....+.+++ ..+.+|||||..++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987532 33345556677766776665 45789999997654332 2356
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
++.+|++++|+|.+++.+++.. |+..+.. .+.|+++|+||+|+... +...+++..+.+++++|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988776664 6555432 46899999999998543 22345667788999999998 58
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
++++++.|.+.
T Consensus 348 I~~~~~~L~~~ 358 (442)
T TIGR00450 348 IKALVDLLTQK 358 (442)
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.94 E-value=6.8e-25 Score=141.65 Aligned_cols=145 Identities=21% Similarity=0.230 Sum_probs=105.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh--------hhhhhhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIR 80 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 80 (170)
++|+++|++|+|||||++++.+.... ....+..+.+......... ..++.+|||||..++.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 2223333334433344343 35789999999655432 1234567
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
++|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++|++++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998777666544322 357999999999998754433 344456799999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 147 ~l~~~l~~~ 155 (157)
T cd04164 147 ELKEALLEL 155 (157)
T ss_pred HHHHHHHHh
Confidence 999999875
No 156
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.94 E-value=3.4e-25 Score=147.77 Aligned_cols=157 Identities=21% Similarity=0.211 Sum_probs=101.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC----CCCC---Cccc--eeeeeeeEEEEE----------eCCeEEEEEEEecCChhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD----KFDN---TYQA--TIGIDFLSKTMY----------LEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~----~~~~---~~~~--~~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~ 70 (170)
+||+++|++++|||||++++... .+.. +..+ +....+....+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 1111 1122 222222222222 123357899999999876
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHH-H-----
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKS-R----- 142 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~-~----- 142 (170)
+..........+|++++|+|+++.........+. +... .+.|+++++||+|+...... ..++.++.. .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444566789999999998754333322221 1222 25799999999998643221 122222211 1
Q ss_pred -hcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 143 -ELNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 143 -~~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
..+++++++||++|.|+++++++|.++|
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2357899999999999999999998764
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.94 E-value=6.8e-25 Score=145.81 Aligned_cols=154 Identities=22% Similarity=0.214 Sum_probs=109.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccc----------------eeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 74 (170)
+|+++|.+|+|||||++++.+......... ..+.......... ....+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998766543211 1112222222222 2467999999999988888
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHHh---------
Q 030856 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRE--------- 143 (170)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~~--------- 143 (170)
+..++..+|++++|+|.+++..... ..++..+.. .+.|+++|+||+|+..+... ..++.++..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8899999999999999987654332 233333332 47999999999998753221 12333333333
Q ss_pred -----cCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 144 -----LNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 144 -----~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
...+++++||++|.|+++++++|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346899999999999999999998764
No 158
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.4e-25 Score=135.18 Aligned_cols=156 Identities=24% Similarity=0.371 Sum_probs=127.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.++++|+.+|-.++||||++.+|..... ....||+++++...+. +.+++.+||.+|++..+..|++|+.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 4689999999999999999999997764 4457787766555443 5588999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHH-----HHhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~ 160 (170)
||+|..+.+.+++.+..+..+..+. -.+.|+++.+||.|+..++. +++.+.+ ++..++.+.++++.+|+++.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHH
Confidence 9999999988999887766665443 36899999999999976543 3444433 34455688999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
|-|.||.+.
T Consensus 168 eglswlsnn 176 (180)
T KOG0071|consen 168 EGLSWLSNN 176 (180)
T ss_pred HHHHHHHhh
Confidence 999999864
No 159
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=3.6e-25 Score=163.76 Aligned_cols=146 Identities=24% Similarity=0.286 Sum_probs=109.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh--------hhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 78 (170)
..++|+++|.+|+|||||+|++.+.... ....+..+.++....+..++ .++.+|||||..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999987642 33345555566666666655 56899999997654332 2346
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
+.++|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++|+++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999998877765444432 3578999999999986533221 34456899999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
+++++++|.+.
T Consensus 358 I~~L~~~L~~~ 368 (449)
T PRK05291 358 IDELREAIKEL 368 (449)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 160
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.93 E-value=5.5e-25 Score=142.27 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=97.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----hhhhhhhhhhcCCcEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i 86 (170)
+|+++|.+|+|||||+|++.+..... ..+.+. .+... .+|||||.. ++.......++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999988653211 111111 11111 269999962 22222233478999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC--eEEEeecCCCCChHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--MFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~v~~~~~ 164 (170)
+|+|+++++++.. .|+..+ ..+.|+++++||+|+.. ...+...+++...++ +++++||++|+|++++|+
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999998766533 343332 24678999999999854 335667777777775 999999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
++.+.
T Consensus 141 ~l~~~ 145 (158)
T PRK15467 141 YLASL 145 (158)
T ss_pred HHHHh
Confidence 99875
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=2.5e-24 Score=160.71 Aligned_cols=153 Identities=17% Similarity=0.141 Sum_probs=107.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--------hhhhhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 78 (170)
...+|+++|.+|||||||+|++.+.... ....+..+.+.........+ ..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3478999999999999999999987642 33445555555555555555 3588999999652 33445667
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
+..+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.... .+..+.+....+ ..+++||++|.|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~g 186 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRG 186 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCC
Confidence 889999999999998755432 233333332 479999999999985421 122222222233 457999999999
Q ss_pred hHHHHHHHHhhC
Q 030856 159 IKGCSPTIRRLI 170 (170)
Q Consensus 159 v~~~~~~l~~~i 170 (170)
+++++++|.+.+
T Consensus 187 i~eL~~~i~~~l 198 (472)
T PRK03003 187 VGDLLDAVLAAL 198 (472)
T ss_pred cHHHHHHHHhhc
Confidence 999999998753
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=8.8e-25 Score=163.11 Aligned_cols=156 Identities=23% Similarity=0.253 Sum_probs=110.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----------hhhhhhh-
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI- 75 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~- 75 (170)
..++|+++|.+|+|||||+|++++.... .+..+..+.+.....+..++. .+.+|||||. +.+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987642 344555666666666666664 4679999994 2233222
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHH-HHHHhcCCeEEEee
Q 030856 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGE-AKSRELNVMFIETS 152 (170)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~-~~~~~~~~~~~~~S 152 (170)
..+++++|++++|+|++++.+++.+. ++..+.. .+.|+++|+||+|+.+.... ...+.. .+.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999887777654 3333332 57899999999998643211 111121 22223346899999
Q ss_pred cCCCCChHHHHHHHHhh
Q 030856 153 AKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~~ 169 (170)
|++|.|++++|+.+.+.
T Consensus 364 Ak~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 364 AKTGRAVDKLVPALETA 380 (472)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999864
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.93 E-value=1.5e-24 Score=159.00 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=107.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--hhhh------hhhhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD 81 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~~ 81 (170)
.+|+++|.+|+|||||+|+|.+........+..+.+.....+...+. ..+.+|||+|.... ...+ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987654333334444554445544442 26789999997321 1222 233678
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe-EEEeecCCCCChH
Q 030856 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~ 160 (170)
+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+...... ... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCCCHH
Confidence 999999999999887777655544444433357999999999998642111 111 1123454 5889999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 352 eL~e~I~~~ 360 (426)
T PRK11058 352 LLFQALTER 360 (426)
T ss_pred HHHHHHHHH
Confidence 999999865
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.93 E-value=1.4e-24 Score=140.21 Aligned_cols=147 Identities=21% Similarity=0.183 Sum_probs=100.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh--------hhhhhhcCCc
Q 030856 13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS 83 (170)
Q Consensus 13 ~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 83 (170)
+++|.+|+|||||++++.+.... ....+..+.+........++ ..+.+|||||...+.. .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987532 11222333333333333433 5789999999876443 3345678899
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHH
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~ 162 (170)
++++++|..++.+.... .....+.. .+.|+++|+||+|+...... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999865433332 22222222 35999999999998654322 223344566 8899999999999999
Q ss_pred HHHHHhhC
Q 030856 163 SPTIRRLI 170 (170)
Q Consensus 163 ~~~l~~~i 170 (170)
+++|.+.+
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99999865
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=3.8e-24 Score=156.09 Aligned_cols=154 Identities=18% Similarity=0.128 Sum_probs=110.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhhhhhh---hcCCc
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS 83 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d 83 (170)
.|+++|.|+||||||+++++..+......+.++.......+... ....+.+||+||..+ ...+...+ +.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 79999999999999999999876432222222223222223332 134689999999632 22233334 45699
Q ss_pred EEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 84 VAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 84 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
++++|+|+++. ++++....|...+..+.. .+.|+++|+||+|+.. ..+..+.+.+..+.+++++||++++|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 677777778777776543 4789999999999732 13445666666678999999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
+++++++|.+.
T Consensus 315 I~eL~~~L~~~ 325 (424)
T PRK12297 315 LDELLYAVAEL 325 (424)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.93 E-value=3.2e-24 Score=163.02 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=114.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC-------CCCCcc------ceeeeeeeEEE--EEe---CCeEEEEEEEecCChhh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQ------ATIGIDFLSKT--MYL---EDRTVRLQLWDTAGQER 70 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~ 70 (170)
-.|++++|+.++|||||+++++... ....+. +..+.++.... +.+ ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998642 111111 12233333322 222 45668999999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC---e
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---M 147 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 147 (170)
+...+..++..+|++|+|+|+++..+.+....|..... .++|+++|+||+|+.... ..+...++....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766666666544332 368999999999985432 12233455555665 4
Q ss_pred EEEeecCCCCChHHHHHHHHhhC
Q 030856 148 FIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 148 ~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
++++||++|.|++++|++|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999998753
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.93 E-value=5.2e-24 Score=142.52 Aligned_cols=162 Identities=20% Similarity=0.207 Sum_probs=106.3
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----------hhh
Q 030856 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERF 71 (170)
Q Consensus 2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~ 71 (170)
.+......++|+++|.+|+|||||++++.++.+...+.++.+.+........ ...+.+|||||. +.+
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHH
Confidence 3455667899999999999999999999987644333334332222221211 257899999993 344
Q ss_pred hhhhhhhhcCC---cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHHhcCC
Q 030856 72 RSLIPSYIRDS---SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNV 146 (170)
Q Consensus 72 ~~~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~~ 146 (170)
......++..+ +++++++|.+++.+... .++...... .+.|+++++||+|+....+. ..+.+.......+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD 169 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 44455555544 67888899876533322 111111122 36889999999998653322 12334444444467
Q ss_pred eEEEeecCCCCChHHHHHHHHhhC
Q 030856 147 MFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 147 ~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
.++++|++++.|+++++++|.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999998753
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.93 E-value=6.5e-24 Score=160.72 Aligned_cols=154 Identities=20% Similarity=0.185 Sum_probs=112.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+..+|+++|++++|||||++++.+..+.....+..+.+.....+..++. ..+.||||||++.+..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 46689999999999999999999988776555555555555545544432 27899999999999999988899999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC---------CeEEEeecCCCC
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF 157 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~ 157 (170)
+|+|+++...-+... .+. .....++|+++++||+|+.+. ..++....+...+ .+++++||++|.
T Consensus 164 LVVda~dgv~~qT~e-~i~---~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIE-AIS---HAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHH-HHH---HHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 999988642222211 112 122247899999999998542 2333333333222 479999999999
Q ss_pred ChHHHHHHHHh
Q 030856 158 NIKGCSPTIRR 168 (170)
Q Consensus 158 ~v~~~~~~l~~ 168 (170)
|+++++++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999998853
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=4.3e-24 Score=143.48 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=102.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEEEEe-------------------------C--C----
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYL-------------------------E--D---- 55 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~~~~-------------------------~--~---- 55 (170)
++|+++|+.|+|||||++++.+...+ .+.....+.......... . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 58999999999999999999765221 111111111111000000 0 0
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--C
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S 133 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~ 133 (170)
...++.||||||++.+.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1267899999999988887788888999999999998742111111222222221 22478999999998643221 1
Q ss_pred HHHHHHHHHhc---CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 134 IEEGEAKSREL---NVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 134 ~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
.++.+++...+ +++++++||++|+|+++++++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 23344444432 56899999999999999999998754
No 170
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.92 E-value=1e-23 Score=141.48 Aligned_cols=157 Identities=21% Similarity=0.326 Sum_probs=111.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCC-cEEEEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVVVY 89 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 89 (170)
+|+++|++|+|||+|+++|..+.+...+.++ ............+....+.+||+||+..++.....+++++ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998776554333 2233222222223456799999999999999889999998 9999999
Q ss_pred eCCCh-hhHHhHHHHHHHHHHh---cCCCCeEEEEEeCCCCCCCcccC------HHHHHHHHH-----------------
Q 030856 90 DVASR-QSFLNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSR----------------- 142 (170)
Q Consensus 90 d~~~~-~~~~~~~~~~~~~~~~---~~~~~~~vvv~nK~D~~~~~~~~------~~~~~~~~~----------------- 142 (170)
|+++. .++.....|+..+... ..+++|+++++||+|+....... ..++..+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 6777777776655332 23589999999999986432210 000100000
Q ss_pred ---------------hcCCeEEEeecCCCC-ChHHHHHHHHh
Q 030856 143 ---------------ELNVMFIETSAKAGF-NIKGCSPTIRR 168 (170)
Q Consensus 143 ---------------~~~~~~~~~S~~~~~-~v~~~~~~l~~ 168 (170)
...+.++++|++.+. +++.+.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 113468899998876 69999999875
No 171
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=5.4e-24 Score=157.21 Aligned_cols=157 Identities=19% Similarity=0.122 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhh---hhhhhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSL---IPSYIRDS 82 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~ 82 (170)
-.|+++|.||+|||||+++|...+......+..+.......+...+ .++.+||+||..+ ...+ ....+.++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5799999999999999999998654322223333333333343433 5799999999532 1111 22245789
Q ss_pred cEEEEEEeCCCh----hhHHhHHHHHHHHHHhc-----------CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe
Q 030856 83 SVAVVVYDVASR----QSFLNTSKWIDEVRTER-----------GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (170)
Q Consensus 83 d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~-----------~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
|++|+|+|+++. +.++.+..+..++..+. ..+.|+++|+||+|+.+..... +.........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCe
Confidence 999999999852 34555555555554432 1468999999999986544322 2233333455789
Q ss_pred EEEeecCCCCChHHHHHHHHhh
Q 030856 148 FIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 148 ~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
++++||+++.|+++++.+|.+.
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~el 338 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAEL 338 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999999865
No 172
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=9.1e-24 Score=153.28 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=110.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhhhhhcCCc
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS 83 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d 83 (170)
.|+|+|.||+|||||+|+|...+......|.++.......+...+ ...+.++|+||..+- .......+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 699999999999999999998765433334333333333333332 235899999996431 111223477899
Q ss_pred EEEEEEeCC---ChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeecCCC
Q 030856 84 VAVVVYDVA---SRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG 156 (170)
Q Consensus 84 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~ 156 (170)
++++|+|++ +.+.++....|+..+..+.. .+.|+++|+||+|+.....+ .+..+.+.+..+ .+++++||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999988 45667777777777766532 46899999999998654333 234445555544 47899999999
Q ss_pred CChHHHHHHHHhhC
Q 030856 157 FNIKGCSPTIRRLI 170 (170)
Q Consensus 157 ~~v~~~~~~l~~~i 170 (170)
.|+++++++|.+.+
T Consensus 319 ~GIdeLl~~I~~~L 332 (390)
T PRK12298 319 LGVKELCWDLMTFI 332 (390)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998753
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.92 E-value=1.6e-23 Score=136.36 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=103.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh--------hhhhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSYI 79 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~ 79 (170)
...+|+++|++|+|||||++++.+.................. .........+.+|||||..... ......+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 467899999999999999999998754311111111111111 1122234678999999965322 2334457
Q ss_pred cCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCC
Q 030856 80 RDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGF 157 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~ 157 (170)
..+|++++|+|++++. ... ..+...+.. .+.|+++|+||+|+........+....+....+ .+++++|++++.
T Consensus 81 ~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 81 KDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred HhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence 8899999999999762 222 222233332 258999999999986433333344444555443 599999999999
Q ss_pred ChHHHHHHHHhhC
Q 030856 158 NIKGCSPTIRRLI 170 (170)
Q Consensus 158 ~v~~~~~~l~~~i 170 (170)
++++++++|.+.+
T Consensus 156 ~~~~l~~~l~~~~ 168 (168)
T cd04163 156 NVDELLEEIVKYL 168 (168)
T ss_pred ChHHHHHHHHhhC
Confidence 9999999998764
No 174
>PRK00089 era GTPase Era; Reviewed
Probab=99.92 E-value=1.8e-23 Score=147.82 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=103.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh--------hhhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~ 78 (170)
+.-.|+++|.+|+|||||+|++++..... +..+..+.......... ...++.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 45679999999999999999999876642 22222221211111111 23679999999964322 233445
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGF 157 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~ 157 (170)
+..+|++++|+|++++ +.....++..... ..+.|+++|+||+|+...........+.+....+ ..++++||+++.
T Consensus 82 ~~~~D~il~vvd~~~~--~~~~~~~i~~~l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEK--IGPGDEFILEKLK--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCC--CChhHHHHHHHHh--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 7789999999999873 2222222222222 2368999999999986433333344555555545 589999999999
Q ss_pred ChHHHHHHHHhhC
Q 030856 158 NIKGCSPTIRRLI 170 (170)
Q Consensus 158 ~v~~~~~~l~~~i 170 (170)
|+++++++|.+.+
T Consensus 158 gv~~L~~~L~~~l 170 (292)
T PRK00089 158 NVDELLDVIAKYL 170 (292)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998753
No 175
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.92 E-value=1.4e-23 Score=138.54 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=98.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----------hhhhh
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRS 73 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~ 73 (170)
++..+.++|+++|.+|+|||||++++.+......+.++.+.+........++ .+.+|||||. ..+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 4557789999999999999999999998763333333333222222222222 5899999994 23444
Q ss_pred hhhhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHHHHHHHHHhcC--C
Q 030856 74 LIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELN--V 146 (170)
Q Consensus 74 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~~~~~~~~~~~--~ 146 (170)
+...++.. ++++++|+|.+++-+.... ..+..+.. .+.|+++++||+|+..+.. ...+++++.....+ .
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 44455553 5899999999875443333 22233322 3689999999999864322 22345555555554 4
Q ss_pred eEEEeecCCCCChH
Q 030856 147 MFIETSAKAGFNIK 160 (170)
Q Consensus 147 ~~~~~S~~~~~~v~ 160 (170)
.++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 89999999999974
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=3.9e-23 Score=153.25 Aligned_cols=155 Identities=20% Similarity=0.189 Sum_probs=105.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-----------
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------- 74 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 74 (170)
...++|+++|.+|+|||||++++++.... ....+..+.+.....+..++. .+.+|||||.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999986532 233344444444444444443 6899999996433221
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-h----cCCeEE
Q 030856 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-E----LNVMFI 149 (170)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~ 149 (170)
...+++.+|++++|+|++++.+.+... ++..+.. .+.|+++|+||+|+.+. ....++...... . .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence 134578999999999999876655543 2232222 46899999999998621 111122222221 1 246999
Q ss_pred EeecCCCCChHHHHHHHHh
Q 030856 150 ETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~ 168 (170)
++||++|.|++++|+++.+
T Consensus 323 ~~SA~~g~~v~~l~~~i~~ 341 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDE 341 (429)
T ss_pred EEeCCCCCCHHHHHHHHHH
Confidence 9999999999999999875
No 177
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=5.5e-23 Score=134.74 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=102.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----------hhh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP 76 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 76 (170)
.++|+++|.+|+|||||++++.+.... ....+..+..........++ ..+.+||+||..+... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999987532 22223333333333333444 3578999999643210 112
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH-HHHHhc----CCeEEEe
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-AKSREL----NVMFIET 151 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~-~~~~~~----~~~~~~~ 151 (170)
..+.++|++++|+|++++.+..... ++..+.. .+.|+++++||+|+........+... ...+.. ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3467899999999999876654432 2222222 36899999999998765322222222 222322 3689999
Q ss_pred ecCCCCChHHHHHHHHhh
Q 030856 152 SAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 152 S~~~~~~v~~~~~~l~~~ 169 (170)
|++++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 178
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.3e-24 Score=136.47 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=121.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC-------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 79 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 79 (170)
...+.|+|+|..++|||||+.++..... +....++.+.......+ . ..++.+||.+|++..+++|..|+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHH
Confidence 4468899999999999999998765322 12334555544444333 2 45799999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCH-HHHH---HHHHhcCCeEEEeecC
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSI-EEGE---AKSRELNVMFIETSAK 154 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~-~~~~---~~~~~~~~~~~~~S~~ 154 (170)
..++++|+++|+++++.|+.....++.+..... .++|+++.+||.|+.+...... .... +...+..+++.++||.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 999999999999999999998877777665544 7899999999999865433211 1111 2223445799999999
Q ss_pred CCCChHHHHHHHHhh
Q 030856 155 AGFNIKGCSPTIRRL 169 (170)
Q Consensus 155 ~~~~v~~~~~~l~~~ 169 (170)
+|+||++..+|+.+.
T Consensus 171 ~gegv~egi~w~v~~ 185 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKK 185 (197)
T ss_pred hcccHHHHHHHHHHH
Confidence 999999999999875
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.92 E-value=1.9e-23 Score=158.63 Aligned_cols=151 Identities=21% Similarity=0.181 Sum_probs=113.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC---CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
+.|+++|.+++|||||+++|.+.. ++.++.++.+.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999743 3344455566666555555555 68999999999999888888899999999
Q ss_pred EEEeCCC---hhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc--CHHHHHHHHHhc----CCeEEEeecCCC
Q 030856 87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSREL----NVMFIETSAKAG 156 (170)
Q Consensus 87 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~S~~~~ 156 (170)
+|+|+++ +++.+.+ ..+. . .++| +++|+||+|+.+.... ..++.+.+.+.. +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~-~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLD-L--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHH-H--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999987 3343333 2222 2 3567 9999999998754432 233455555544 578999999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
.|+++++++|.+.
T Consensus 152 ~GI~eL~~~L~~l 164 (581)
T TIGR00475 152 QGIGELKKELKNL 164 (581)
T ss_pred CCchhHHHHHHHH
Confidence 9999999988653
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.91 E-value=3.6e-23 Score=159.02 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=110.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeE--EEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
.+..+|+++|..++|||||++++..........+..+.+... ..+...+....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 466899999999999999999999876654433333333222 223333455789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHH-------HHhcC--CeEEEeecCC
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK-------SRELN--VMFIETSAKA 155 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~S~~~ 155 (170)
+|+|+|+++....+....+ ..+ ...++|+++++||+|+.... .++.... ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999874222222211 122 22579999999999986532 2222221 22233 6899999999
Q ss_pred CCChHHHHHHHHh
Q 030856 156 GFNIKGCSPTIRR 168 (170)
Q Consensus 156 ~~~v~~~~~~l~~ 168 (170)
|.|+++++++|..
T Consensus 395 G~GIdeLle~I~~ 407 (742)
T CHL00189 395 GTNIDKLLETILL 407 (742)
T ss_pred CCCHHHHHHhhhh
Confidence 9999999999865
No 181
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.91 E-value=1.8e-23 Score=158.90 Aligned_cols=145 Identities=17% Similarity=0.224 Sum_probs=109.1
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh------hhhhh--cCCcEEEE
Q 030856 16 GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVV 87 (170)
Q Consensus 16 G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~ 87 (170)
|.+|+|||||+|++.+........+..+.+........++ .++.+|||||..++... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876555556666666666666655 35799999998776543 23333 37899999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
|+|.++.+.. ..+..++. ..+.|+++|+||+|+.+++.+. .+.+.+++..+++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875332 22222222 2479999999999987655554 456788889999999999999999999999997
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 152 ~~ 153 (591)
T TIGR00437 152 KA 153 (591)
T ss_pred HH
Confidence 63
No 182
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=4.6e-23 Score=140.86 Aligned_cols=159 Identities=17% Similarity=0.214 Sum_probs=108.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--------hhhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------RSLIP 76 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~ 76 (170)
..+.--|+++|.|++|||||+|++.+++.. .+..+.++.+......+.+ ..++.++||||...- .....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 345667999999999999999999999876 4444444433333333333 457899999995432 22334
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 155 (170)
..+..+|+++||+|++++ +..-..++....+. .+.|+++++||.|..............+...... .++++||++
T Consensus 81 ~sl~dvDlilfvvd~~~~--~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~ 156 (298)
T COG1159 81 SALKDVDLILFVVDADEG--WGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK 156 (298)
T ss_pred HHhccCcEEEEEEecccc--CCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence 447789999999999864 22233332222222 3689999999999876555212333333333333 899999999
Q ss_pred CCChHHHHHHHHhhC
Q 030856 156 GFNIKGCSPTIRRLI 170 (170)
Q Consensus 156 ~~~v~~~~~~l~~~i 170 (170)
|.|++.+.+.+.+++
T Consensus 157 g~n~~~L~~~i~~~L 171 (298)
T COG1159 157 GDNVDTLLEIIKEYL 171 (298)
T ss_pred cCCHHHHHHHHHHhC
Confidence 999999999998764
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.91 E-value=7e-23 Score=158.63 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=111.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+...|+++|..++|||||+++|....+.....+..+.+.....+.+++ ..+.||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 35678999999999999999999998776554444444444444444444 5789999999999999999899999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH-------HHHHhcC--CeEEEeecCCC
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-------AKSRELN--VMFIETSAKAG 156 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~-------~~~~~~~--~~~~~~S~~~~ 156 (170)
|+|+|+++...-+.... +......++|+++++||+|+.... .+... .++..++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 99999987422111111 122222579999999999985432 11111 1223333 68999999999
Q ss_pred CChHHHHHHHHh
Q 030856 157 FNIKGCSPTIRR 168 (170)
Q Consensus 157 ~~v~~~~~~l~~ 168 (170)
.|+++++++|..
T Consensus 438 ~GI~eLle~I~~ 449 (787)
T PRK05306 438 EGIDELLEAILL 449 (787)
T ss_pred CCchHHHHhhhh
Confidence 999999999863
No 184
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.91 E-value=1.5e-23 Score=139.41 Aligned_cols=159 Identities=23% Similarity=0.267 Sum_probs=107.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCC------------------ccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
+.++|+++|+.++|||||+++|.+...... .....+.+..............+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 468999999999999999999996542211 01112222222222212345689999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHH-HHHHhc---
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGE-AKSREL--- 144 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~-~~~~~~--- 144 (170)
.+.......+..+|++|+|+|+.+...... ...+..+.. .++|+++|+||+|+...+.. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 998888888999999999999986533222 222233332 36889999999998722111 112222 333333
Q ss_pred ---CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 145 ---NVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 145 ---~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
.++++++||.+|+|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 24899999999999999999998864
No 185
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.91 E-value=1.2e-22 Score=157.86 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=111.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh----------hhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IPS 77 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 77 (170)
++++|+++|.+|+|||||+|++.+........+..+.+..... ......++.+||+||..++... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 4689999999999999999999987654332344444433333 3344567999999998765421 122
Q ss_pred hh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCC
Q 030856 78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 78 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 155 (170)
++ ..+|++++|+|.++.++-. .+..++.. .+.|+++++||+|+.+.+... ...+++.+..|++++++|+++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence 32 4799999999999865432 23333332 369999999999987655553 556788889999999999999
Q ss_pred CCChHHHHHHHHh
Q 030856 156 GFNIKGCSPTIRR 168 (170)
Q Consensus 156 ~~~v~~~~~~l~~ 168 (170)
++|++++.+.+.+
T Consensus 153 g~GIdeL~~~I~~ 165 (772)
T PRK09554 153 GRGIEALKLAIDR 165 (772)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998865
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.91 E-value=9.9e-23 Score=155.06 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=111.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC--C-----CC------ccceeeeeeeEEE--EEe---CCeEEEEEEEecCChh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF--D-----NT------YQATIGIDFLSKT--MYL---EDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~--~-----~~------~~~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~ 69 (170)
+-.+++++|+.++|||||+++++.... . .. .....+.++.... +.+ ++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 446899999999999999999986321 1 00 0112222222222 222 4557899999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC---
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--- 146 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 146 (170)
++...+..++..+|++|+|+|+++....+....|.... ..++|+++|+||+|+..... .....++....++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcc
Confidence 99999999999999999999999865555555553322 24689999999999854321 2223344444555
Q ss_pred eEEEeecCCCCChHHHHHHHHhhC
Q 030856 147 MFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 147 ~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
.++++||++|.|+++++++|.+.+
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhC
Confidence 389999999999999999998753
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.2e-22 Score=150.90 Aligned_cols=146 Identities=20% Similarity=0.163 Sum_probs=103.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--------hhhhhhhhhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR 80 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 80 (170)
.+|+++|.+|+|||||+|++.+.... ....+..+.+........++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 57999999999999999999987642 22234444455555555555 6799999999876 2333455678
Q ss_pred CCcEEEEEEeCCChhhHH--hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCC
Q 030856 81 DSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 157 (170)
++|++++|+|.+++.+.. .+..|+.. .+.|+++|+||+|..+. .+...++ ...++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998753322 22333322 26899999999996431 1222222 34566 58999999999
Q ss_pred ChHHHHHHHHh
Q 030856 158 NIKGCSPTIRR 168 (170)
Q Consensus 158 ~v~~~~~~l~~ 168 (170)
|++++++++.+
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999875
No 188
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.5e-23 Score=133.61 Aligned_cols=162 Identities=31% Similarity=0.539 Sum_probs=141.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....++++++|..|.||||+.++...+.+...+.++.+.+........+...+++..|||.|++.+..+...++-+....
T Consensus 7 ~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 7 QGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred ccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence 34679999999999999999999999999999999999988888776555579999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
|++||++..-++.++..|...+.+.+ .++|+++++||.|... +++ ......+-+..++.+++.|++.+.|.+.-|-|
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~-r~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKA-RKV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLW 163 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccc-ccc-ccccceeeecccceeEEeecccccccccchHH
Confidence 99999999999999999999998877 4699999999999754 222 12334456677899999999999999999999
Q ss_pred HHhhC
Q 030856 166 IRRLI 170 (170)
Q Consensus 166 l~~~i 170 (170)
+++.+
T Consensus 164 LarKl 168 (216)
T KOG0096|consen 164 LARKL 168 (216)
T ss_pred Hhhhh
Confidence 98764
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.90 E-value=9.3e-23 Score=131.71 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=104.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-------hhhhhhcCCcEE
Q 030856 14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSSVA 85 (170)
Q Consensus 14 i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~ 85 (170)
++|++|+|||||++++.+.... ....+..+............ ...+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986554 22223322233333322221 45799999999765433 344578899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH---HHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (170)
++++|.+++....... +..... ..+.|+++|+||+|+......... .........+++++++|++++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876655544 222222 257999999999998754433221 122333445679999999999999999
Q ss_pred HHHHHhhC
Q 030856 163 SPTIRRLI 170 (170)
Q Consensus 163 ~~~l~~~i 170 (170)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998764
No 190
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2.6e-22 Score=148.89 Aligned_cols=149 Identities=21% Similarity=0.189 Sum_probs=105.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh--------hhhhhhhhhhhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSYIRD 81 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~ 81 (170)
+|+++|.+|+|||||+|++.+.... ....+..+.+.........+ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 22234444445455555544 46999999995 3445556667899
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 030856 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 160 (170)
+|++++|+|..++.+... ..+...+.+ .+.|+++|+||+|....... .. .....++ +++++||.+|.|++
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~-~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AA-EFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HH-HHHhcCCCCeEEEeCCcCCChH
Confidence 999999999986533222 112222222 36899999999998654322 11 2345676 89999999999999
Q ss_pred HHHHHHHhhC
Q 030856 161 GCSPTIRRLI 170 (170)
Q Consensus 161 ~~~~~l~~~i 170 (170)
++++++.+.+
T Consensus 150 ~ll~~i~~~l 159 (429)
T TIGR03594 150 DLLDAILELL 159 (429)
T ss_pred HHHHHHHHhc
Confidence 9999998653
No 191
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=123.19 Aligned_cols=160 Identities=21% Similarity=0.278 Sum_probs=123.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
...+++||+++|-.++|||||++.|.+... ....|+.+++...... ...+++.+||.+|+...+..|..|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccce
Confidence 446789999999999999999999887653 4446677665554443 245789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHH---HHHHhcCCeEEEeecCCCCChH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGE---AKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~---~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||+|.+|...|+.....+.++..... ..+|+++.+||.|+..+..+.....+ ...+.+-+.+-+||+.+++|+.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 9999999999999988777777766544 67999999999998654443211111 1112223578899999999999
Q ss_pred HHHHHHHh
Q 030856 161 GCSPTIRR 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
.-.+|+..
T Consensus 169 dg~~wv~s 176 (185)
T KOG0074|consen 169 DGSDWVQS 176 (185)
T ss_pred Ccchhhhc
Confidence 98888865
No 192
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.89 E-value=6e-22 Score=142.70 Aligned_cols=150 Identities=24% Similarity=0.301 Sum_probs=113.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhh--------hhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 78 (170)
.-++++++|.||+|||||+|+|.++... .+..|.++.++....+.++| +++.+.||+|..+..... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 3589999999999999999999998665 56678888899999988877 778999999976554432 334
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
++.+|.+++|+|.+.+.+-....- +. ....+.|+++|.||.|+..+...... ....+.+++.+|+++++|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence 789999999999998522222111 11 23467999999999999765442211 222344799999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
++.+.+.|.+.
T Consensus 364 l~~L~~~i~~~ 374 (454)
T COG0486 364 LDALREAIKQL 374 (454)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.89 E-value=1.8e-21 Score=133.02 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=101.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-------hhhhhhhcCCc
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS 83 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 83 (170)
+|+++|++|+|||||++++.+........+..+.+.....+..++ ..+++||+||..+.. .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998764322222223333344444444 578999999964322 12345688999
Q ss_pred EEEEEEeCCChh-hHHhHHHHHHHH----------------------------------------HHh------------
Q 030856 84 VAVVVYDVASRQ-SFLNTSKWIDEV----------------------------------------RTE------------ 110 (170)
Q Consensus 84 ~~i~v~d~~~~~-~~~~~~~~~~~~----------------------------------------~~~------------ 110 (170)
++++|+|+++++ ..+.+...+... .+.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 333333333211 000
Q ss_pred -----------c--CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 111 -----------R--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 111 -----------~--~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
. ..-.|+++|+||+|+.. .++...+++. ..++++||+++.|++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 01258999999999843 3444455543 4689999999999999999998754
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=6.1e-22 Score=142.32 Aligned_cols=149 Identities=21% Similarity=0.189 Sum_probs=107.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh---------hhhhhhhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI 79 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 79 (170)
..|+++|.||||||||+|+|.+++.. .+..|.++.+.......+.+. .+.++||+|.+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999998775 444566666766666666554 4899999995532 22344457
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCC
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 158 (170)
..+|++|||+|....-+ .....+..+.+. .+.|+++|+||+|-. ..+........+|+ .++++||..|.|
T Consensus 82 ~eADvilfvVD~~~Git--~~D~~ia~~Lr~--~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGIT--PADEEIAKILRR--SKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCC--HHHHHHHHHHHh--cCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence 89999999999875322 222222222222 469999999999953 22333333445566 889999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
+.++++++.+.
T Consensus 153 i~dLld~v~~~ 163 (444)
T COG1160 153 IGDLLDAVLEL 163 (444)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.3e-21 Score=145.42 Aligned_cols=155 Identities=20% Similarity=0.154 Sum_probs=104.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----------hh-h
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RS-L 74 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~-~ 74 (170)
...++|+++|.+|+|||||+|++++... .....+..+.+.....+..++ ..+.+|||||.... .. .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3569999999999999999999997653 233344444444444444444 45789999995321 11 1
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHH----HhcCCeEEE
Q 030856 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIE 150 (170)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 150 (170)
...++..+|++|+|+|++++.+.+... ++..+.. .+.|+++|+||+|+.+.... .+....+. ....+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence 223578899999999999876655432 2222222 36899999999998632211 11111111 123469999
Q ss_pred eecCCCCChHHHHHHHHh
Q 030856 151 TSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~ 168 (170)
+||++|.|++++++.+.+
T Consensus 324 ~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDE 341 (435)
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 999999999999998865
No 196
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.89 E-value=1.4e-21 Score=147.94 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=102.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc----eeeeeeeEEEEE------------eCCeEEEEEEEecCChhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMY------------LEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~ 71 (170)
+..-|+++|.+++|||||++++.+......... +.+..+...... +......+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 456799999999999999999998766433222 222222211110 0001123899999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc------------CHHH
Q 030856 72 RSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV------------SIEE 136 (170)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~------------~~~~ 136 (170)
..++..++..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+...... ..+.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9999999999999999999987 444444321 221 36899999999998632100 0000
Q ss_pred ------------HHHHHH------------hc--CCeEEEeecCCCCChHHHHHHHHh
Q 030856 137 ------------GEAKSR------------EL--NVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 137 ------------~~~~~~------------~~--~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
...+.. .+ .++++++||++|+|+++++.+|..
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 001111 11 358999999999999999998863
No 197
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.89 E-value=5.4e-21 Score=121.77 Aligned_cols=157 Identities=23% Similarity=0.304 Sum_probs=118.0
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC--------CCcc----ceeeeeeeEEEEEeCCeEEEEEEEecCChhhh
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------NTYQ----ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 71 (170)
.......||++.|+.++||||+++++...... .++. .|...++..... +....+++++|||++++
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHH
Confidence 44567899999999999999999999987641 1111 122222222222 22357899999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc--CCeEE
Q 030856 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFI 149 (170)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (170)
.-+|..+++++.+.|+++|.+.+..+ .....+..+.... .+|+++++||.|+...+ ..+..++..... .++++
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCcee
Confidence 99999999999999999999998887 4444444444432 29999999999997644 445655555554 78999
Q ss_pred EeecCCCCChHHHHHHHHh
Q 030856 150 ETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~ 168 (170)
+.++.++++..+.++.+..
T Consensus 157 ~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 157 EIDATEGEGARDQLDVLLL 175 (187)
T ss_pred eeecccchhHHHHHHHHHh
Confidence 9999999999998888764
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=2.7e-21 Score=150.56 Aligned_cols=153 Identities=19% Similarity=0.129 Sum_probs=103.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--------hhhhhhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPS 77 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 77 (170)
....+|+++|.+|+|||||+|++++.... ....+..+.+........++ ..+.+|||||.+. +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 34578999999999999999999987542 23334444444444444444 4688999999653 3344455
Q ss_pred hhcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC
Q 030856 78 YIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (170)
++..+|++++|+|.++.- ... ..|...+.. .+.|+++|+||+|+.... ......+....+ ..+++||++|
T Consensus 351 ~~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g 421 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHG 421 (712)
T ss_pred HHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCC
Confidence 688999999999998632 222 233344432 479999999999975421 111222222222 4579999999
Q ss_pred CChHHHHHHHHhhC
Q 030856 157 FNIKGCSPTIRRLI 170 (170)
Q Consensus 157 ~~v~~~~~~l~~~i 170 (170)
.|+++++++|.+.+
T Consensus 422 ~GI~eLl~~i~~~l 435 (712)
T PRK09518 422 RGVGDLLDEALDSL 435 (712)
T ss_pred CCchHHHHHHHHhc
Confidence 99999999998753
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=1.5e-21 Score=151.95 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=106.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----------hhhhh-h
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSL-I 75 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~-~ 75 (170)
..++|+++|.+|+|||||+|++++.... ....+..+.+.....+..++. .+.+|||||.. .+..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 233444445555555556654 46699999953 12221 1
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHH-Hh----cCCeEEE
Q 030856 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-RE----LNVMFIE 150 (170)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~~ 150 (170)
...++.+|++++|+|++++.+.+.... +..+.. .+.|+++|+||+|+.+... .+..+... .. ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234688999999999998877766543 233322 4789999999999865322 12222211 11 1347899
Q ss_pred eecCCCCChHHHHHHHHhh
Q 030856 151 TSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~ 169 (170)
+||++|.|++++++.+.+.
T Consensus 601 iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999998764
No 200
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.89 E-value=7.4e-22 Score=145.99 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=101.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCccceeeeeeeEEEEEe
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYL 53 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 53 (170)
...+.++|+++|.+++|||||+++|++.... .+..+..+.+.....+
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~-- 79 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKF-- 79 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEE--
Confidence 3467799999999999999999999843211 0112333333333333
Q ss_pred CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--
Q 030856 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-- 131 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~-- 131 (170)
....+++.+|||||++.+.......+..+|++++|+|++++.++.....+...+....+ ..|+++++||+|+.....
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 80 ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHH
Confidence 33456899999999988766555667899999999999863222222222222222221 246899999999864221
Q ss_pred --cCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856 132 --VSIEEGEAKSRELN-----VMFIETSAKAGFNIKG 161 (170)
Q Consensus 132 --~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 161 (170)
...++...+....+ ++++++||++|+|+++
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 11244555555554 4799999999999987
No 201
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.88 E-value=1.4e-21 Score=144.46 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=103.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--CCC-----------------------------CCccceeeeeeeEEEEEeC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFD-----------------------------NTYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (170)
..+.++|+++|+.++|||||+++|+.. ... .+..+..+.+.....+ .
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~--~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF--E 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE--c
Confidence 456799999999999999999999852 111 0112233334443333 3
Q ss_pred CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--
Q 030856 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-- 131 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~-- 131 (170)
.....+.+||+||++++.......+..+|++++|+|++++++.... ..+...+.... ...|+++++||+|+.+..+
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHH
Confidence 3456899999999998877666677899999999999987533211 11111222322 2357999999999864222
Q ss_pred --cCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856 132 --VSIEEGEAKSRELN-----VMFIETSAKAGFNIKG 161 (170)
Q Consensus 132 --~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 161 (170)
...++.+++++..+ ++++++||++|.|+++
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12345566666655 5899999999999986
No 202
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.8e-23 Score=125.37 Aligned_cols=157 Identities=21% Similarity=0.293 Sum_probs=120.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
++..+++++|-.|+|||+++.++.-++.. ...|+.+..... +..+..++++||..|+...+..|+.|+.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 47899999999999999999888776653 335666544333 3346688999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHH----HHHHhcCCeEEEeecCCCCChHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSRELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~~~S~~~~~~v~~ 161 (170)
+|+|.+|.+........+..+.++. -.+..+++++||.|....... .+... .-.+.+-+.++++||.+|+|+++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~-~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR-SEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH-HHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999999988887766555554443 356889999999997542211 11111 12233346999999999999999
Q ss_pred HHHHHHhh
Q 030856 162 CSPTIRRL 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
..+||.+.
T Consensus 170 ~~DWL~~~ 177 (182)
T KOG0072|consen 170 AMDWLQRP 177 (182)
T ss_pred HHHHHHHH
Confidence 99999864
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.88 E-value=1.9e-21 Score=142.79 Aligned_cols=161 Identities=20% Similarity=0.160 Sum_probs=105.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC---Cccceeeeeee--EEE------------EEe----CC------eEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFL--SKT------------MYL----ED------RTVR 59 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~~--~~~------------~~~----~~------~~~~ 59 (170)
.++++|+++|..++|||||+++|.+..... +..+..+.... ... ++. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467999999999999999999997643211 11111111111 000 000 11 1357
Q ss_pred EEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHH
Q 030856 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEG 137 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~ 137 (170)
+.+||+||++.|...+......+|++++|+|++++.........+..+. .. ...|+++++||+|+.+.... ..++.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-II-GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-Hc-CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 8999999999998888888889999999999986431122233333222 22 13468999999998653221 12344
Q ss_pred HHHHHhc---CCeEEEeecCCCCChHHHHHHHHhh
Q 030856 138 EAKSREL---NVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 138 ~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
..+.... +++++++||++|+|+++++++|.+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 4444433 5789999999999999999999864
No 204
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.88 E-value=2.7e-21 Score=120.50 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=99.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----hhhhhhhhhhhcCCcEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----ERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i 86 (170)
||+++|+.|+|||||+++|.+... .+..|.... +.=.++||||. ..+..........+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~------------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE------------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE------------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998765 333333321 11245899993 334444455567899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 165 (170)
++.|++++.+.-- ..+... -+.|++=|+||+|+.. ...+.+.++++.+..|+ .+|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999997643211 111222 2578999999999863 24467888899999998 7899999999999999998
Q ss_pred HHh
Q 030856 166 IRR 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 141 L~~ 143 (143)
T PF10662_consen 141 LEE 143 (143)
T ss_pred HhC
Confidence 853
No 205
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.88 E-value=5e-21 Score=124.83 Aligned_cols=151 Identities=23% Similarity=0.349 Sum_probs=97.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----------hhhhhhhhhhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIPSYIR 80 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~ 80 (170)
.|+++|.+|+|||||++.+.+........++.+.+........++ .+.+||+||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999996555444444444333333333332 78999999943 23444444444
Q ss_pred ---CCcEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHH--hcCCeEEEe
Q 030856 81 ---DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR--ELNVMFIET 151 (170)
Q Consensus 81 ---~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 151 (170)
..+++++++|..++.+. ..+..|+.. .+.|+++++||+|+...... .........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 35788999998765221 222333322 25899999999998543221 1122222222 334589999
Q ss_pred ecCCCCChHHHHHHHHhhC
Q 030856 152 SAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 152 S~~~~~~v~~~~~~l~~~i 170 (170)
|++++.++++++++|.+.+
T Consensus 152 Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 152 SSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ecCCCCCHHHHHHHHHHhC
Confidence 9999999999999998864
No 206
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.88 E-value=4e-22 Score=146.08 Aligned_cols=168 Identities=23% Similarity=0.301 Sum_probs=129.0
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|+.....+.+||+++|+.|+|||||+-++....+++...+-...-..+...+. ..+..++.|++..++-+......++
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP--e~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP--ENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc--CcCceEEEecccccchhHHHHHHHh
Confidence 66777889999999999999999999999998887654433322222222222 3356899999876666666677889
Q ss_pred CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHH-HHHHHHhcCC--eEEEeecC
Q 030856 81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNV--MFIETSAK 154 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~~--~~~~~S~~ 154 (170)
.+|+++++|+++++++++.+ ..|+..+++..+ .+.|+|+|+||.|.......+.+. ...+...+.- ..++|||+
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~ 158 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL 158 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence 99999999999999999998 789999988775 579999999999987654443333 4444444442 67999999
Q ss_pred CCCChHHHHHHHHhhC
Q 030856 155 AGFNIKGCSPTIRRLI 170 (170)
Q Consensus 155 ~~~~v~~~~~~l~~~i 170 (170)
+..++.++|.+..+.+
T Consensus 159 ~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 159 TLANVSELFYYAQKAV 174 (625)
T ss_pred hhhhhHhhhhhhhhee
Confidence 9999999998876643
No 207
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.87 E-value=4.7e-21 Score=140.64 Aligned_cols=162 Identities=20% Similarity=0.153 Sum_probs=103.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeE--EEE----------------EeC------CeE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS--KTM----------------YLE------DRT 57 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~--~~~----------------~~~------~~~ 57 (170)
...++++|+++|+.++|||||+.+|.+...+ .+..+..+.+... ... ..+ ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4456799999999999999999999654221 1111122222111 000 000 013
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CH
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SI 134 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~ 134 (170)
..+.+|||||++++..........+|++++|+|++++. .-+. ...+..+.. . ...|+++|+||+|+.+.... ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~-~-~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDI-I-GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHH-c-CCCcEEEEEEeeccccchhHHHHH
Confidence 57899999999888776666667789999999998642 1111 111222222 1 12368999999998653322 12
Q ss_pred HHHHHHHHhc---CCeEEEeecCCCCChHHHHHHHHhh
Q 030856 135 EEGEAKSREL---NVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
++.+.++... +.+++++||++|.|+++++++|.+.
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 3444444432 5789999999999999999999864
No 208
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.87 E-value=3.6e-21 Score=146.21 Aligned_cols=157 Identities=17% Similarity=0.245 Sum_probs=111.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCCCC------------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD--KFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 75 (170)
.+|+++|+.++|||||+++|+.. .+... .....+.+.......+.+..+++.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999863 22111 11223334444444444455789999999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHH-------hcCCe
Q 030856 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM 147 (170)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 147 (170)
..++..+|++++|+|+++.. ......|+..+.. .++|+++|+||+|+...+.. ..++...+.. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999998642 3334555555443 46899999999998654321 1233333332 23578
Q ss_pred EEEeecCCCC----------ChHHHHHHHHhhC
Q 030856 148 FIETSAKAGF----------NIKGCSPTIRRLI 170 (170)
Q Consensus 148 ~~~~S~~~~~----------~v~~~~~~l~~~i 170 (170)
++++||++|. |++.+|+.|.+.+
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 9999999996 7999999998754
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.87 E-value=1.3e-20 Score=143.13 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=112.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC--CCCCC------------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD--KFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 73 (170)
+-.+|+++|+.++|||||+++++.. .+... ..++.+.+.......+....+++.+|||||+.++..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 3478999999999999999999963 22211 123345555555555556678999999999999999
Q ss_pred hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHH-------hcC
Q 030856 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELN 145 (170)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~-------~~~ 145 (170)
.+..+++.+|++++|+|+++....+. ..++..+.. .++|.++++||+|+...+.. ..++...+.. ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 99999999999999999987533222 233333322 46888999999998654321 1223333321 234
Q ss_pred CeEEEeecCCCC----------ChHHHHHHHHhhC
Q 030856 146 VMFIETSAKAGF----------NIKGCSPTIRRLI 170 (170)
Q Consensus 146 ~~~~~~S~~~~~----------~v~~~~~~l~~~i 170 (170)
++++.+||++|. ++..+++.|.+.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 789999999998 5888998887653
No 210
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.87 E-value=2e-24 Score=137.19 Aligned_cols=162 Identities=35% Similarity=0.560 Sum_probs=140.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe-EEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.-+++.++|..|+|||+++.++..+.++..|..+++.++..+....+.. .+++.+||..|++.+..+...|++.+.+..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 4489999999999999999999999998899999999998888776654 468899999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCccc-CHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 160 (170)
+|||+++.-+|+....|.+.+.... +..+|+++..||||+...... .......+++++|+ ..+++|++++.+++
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence 9999999999999999999875532 356889999999998543222 24777888999998 89999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
|.-..+++.
T Consensus 184 Ea~r~lVe~ 192 (229)
T KOG4423|consen 184 EAQRELVEK 192 (229)
T ss_pred HHHHHHHHH
Confidence 998888764
No 211
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.87 E-value=2.6e-20 Score=124.02 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=95.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 71 (170)
++++|+++|..++|||||+++|++... +.+..+..+.+. ....+.....++.++||||...+
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHH
Confidence 358999999999999999999986411 001122222222 22333344567899999999888
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhc---
Q 030856 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSREL--- 144 (170)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~--- 144 (170)
.......+..+|++++|+|+...-.- .....+..+.. .++| +++++||+|+....+. ..++...+....
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~ 154 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 77777788899999999998864221 12222233332 3466 7788999998632221 123444554444
Q ss_pred --CCeEEEeecCCCCCh
Q 030856 145 --NVMFIETSAKAGFNI 159 (170)
Q Consensus 145 --~~~~~~~S~~~~~~v 159 (170)
+++++++||++|.|+
T Consensus 155 ~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 155 GDNTPIVRGSALKALEG 171 (195)
T ss_pred ccCCeEEEeeCccccCC
Confidence 368999999999985
No 212
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.87 E-value=9e-21 Score=127.85 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=93.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-C------------------------------CccceeeeeeeEEEEEeCCeEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD-N------------------------------TYQATIGIDFLSKTMYLEDRTVR 59 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 59 (170)
||+++|.+|+|||||+++|+..... . +..+..+.+.....+.. ...+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST--PKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec--CCce
Confidence 6899999999999999999753221 0 00122222333333323 3457
Q ss_pred EEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc----CHH
Q 030856 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----SIE 135 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~----~~~ 135 (170)
+.+|||||+.++.......+..+|++++|+|++++..-+. ..... +.... ...++++|+||+|+...... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHc-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8899999998877666777889999999999986522111 11112 22222 12357888999998643221 123
Q ss_pred HHHHHHHhcCC---eEEEeecCCCCChHH
Q 030856 136 EGEAKSRELNV---MFIETSAKAGFNIKG 161 (170)
Q Consensus 136 ~~~~~~~~~~~---~~~~~S~~~~~~v~~ 161 (170)
+.+.+.+..++ +++++||++|.|+++
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 44555566664 589999999999875
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=2.9e-20 Score=141.22 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=101.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCcc----ceeeeeeeEEEEEe--CCeE-----E-----EEEEEecCChhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ----ATIGIDFLSKTMYL--EDRT-----V-----RLQLWDTAGQER 70 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~g~~~ 70 (170)
.++..|+++|.+++|||||++++.+........ ++.+..+....... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 466789999999999999999998765432222 22222222111100 0111 1 268999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--C----------HH
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S----------IE 135 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~----------~~ 135 (170)
|..++...+..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+...... . ..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99988888899999999999987 455544432 221 47899999999998521110 0 00
Q ss_pred -----------HHHHHHHh---------------cCCeEEEeecCCCCChHHHHHHHH
Q 030856 136 -----------EGEAKSRE---------------LNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 136 -----------~~~~~~~~---------------~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
+....... ..++++++||.+|+|++++++.+.
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 00011111 135899999999999999988775
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.86 E-value=3.3e-20 Score=141.62 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=104.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC---CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
-|+++|..++|||||+++|.+.. .+.+..+..+.+.........+ ...+.+||+||++.+.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58999999999999999999643 2333333444444333332222 2358999999999997777777899999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc--CHHHHHHHHHhcC---CeEEEeecCCCCChHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSRELN---VMFIETSAKAGFNIKG 161 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~S~~~~~~v~~ 161 (170)
|+|+.+... ......+..+ ... ++| +++|+||+|+.++... ..++.+++....+ .+++++||++|+|+++
T Consensus 81 VVda~eg~~-~qT~ehl~il-~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVM-AQTREHLAIL-QLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCc-HHHHHHHHHH-HHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999886311 1112222222 222 355 5789999998653222 1244455555444 5899999999999999
Q ss_pred HHHHHHhh
Q 030856 162 CSPTIRRL 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
++++|.+.
T Consensus 157 L~~~L~~~ 164 (614)
T PRK10512 157 LREHLLQL 164 (614)
T ss_pred HHHHHHHh
Confidence 99998753
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.86 E-value=2.2e-20 Score=127.90 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=79.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--------C-----Cc---cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD--------N-----TY---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 74 (170)
+|+++|..|+|||||+++++..... . ++ ....+...............++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999864211 0 00 011122222223333344578999999999999888
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
...+++.+|++++|+|.++.... ....++..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence 89999999999999999875433 23344444433 3689999999999863
No 216
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.8e-20 Score=139.39 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=115.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh------hhhhh-h-
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSY-I- 79 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~-~- 79 (170)
+..+|+++|.||+|||||+|++++.+..-..-|..+.+.........+. ++++.|+||...... ..+.+ +
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 4567999999999999999999998776555566766777666665554 489999999443222 22223 3
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
...|+++-|.|++|.+.--.+.-.+.+ -+.|++++.|+.|..+.+.+. -+.+++.+..|+|++++||++|.|+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCH
Confidence 357999999999987654443332222 378999999999987665553 5567889999999999999999999
Q ss_pred HHHHHHHHh
Q 030856 160 KGCSPTIRR 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+++...+.+
T Consensus 153 ~~l~~~i~~ 161 (653)
T COG0370 153 EELKRAIIE 161 (653)
T ss_pred HHHHHHHHH
Confidence 999998875
No 217
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.86 E-value=2e-20 Score=126.63 Aligned_cols=155 Identities=24% Similarity=0.278 Sum_probs=101.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCC-----------c------cceeeeeee--EEEEEe---CCeEEEEEEEecCCh
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNT-----------Y------QATIGIDFL--SKTMYL---EDRTVRLQLWDTAGQ 68 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~-----------~------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~g~ 68 (170)
+|+++|+.|+|||||+++|+....... + ....+.+.. ...... ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987433211 0 011111211 111111 345688999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc-c-----------CHHH
Q 030856 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-V-----------SIEE 136 (170)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~-~-----------~~~~ 136 (170)
.++......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+..... . ..++
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 9998888888999999999999987655433 333333322 3589999999999752110 0 0122
Q ss_pred HHHHHHhcCC-----------eEEEeecCCCCChH--------HHHHHHHhh
Q 030856 137 GEAKSRELNV-----------MFIETSAKAGFNIK--------GCSPTIRRL 169 (170)
Q Consensus 137 ~~~~~~~~~~-----------~~~~~S~~~~~~v~--------~~~~~l~~~ 169 (170)
....+...+. .++++|++.+++.. ++++.|.+.
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSN 209 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhh
Confidence 3333333322 27789999999877 777777654
No 218
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=7.5e-20 Score=131.68 Aligned_cols=155 Identities=25% Similarity=0.232 Sum_probs=111.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----------hh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LI 75 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~ 75 (170)
..++|+++|.|++|||||+|+++++... .+..+.++.+.....+..+++ ++.++||+|...-.. ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 5699999999999999999999987654 555666777777777776664 478889999443111 12
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-----CCeEEE
Q 030856 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIE 150 (170)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~ 150 (170)
...+..+|++++|+|++.+-+-++. .+..+.. ..+.++++|+||+|+.++++...++.+...+.. ..+++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIE--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHH--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 2346789999999999976443332 2222222 247889999999999876545555544443321 248999
Q ss_pred eecCCCCChHHHHHHHHh
Q 030856 151 TSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~ 168 (170)
+||.++.+++++|+.+.+
T Consensus 331 iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 331 ISALTGQGLDKLFEAIKE 348 (444)
T ss_pred EEecCCCChHHHHHHHHH
Confidence 999999999999999875
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=3.2e-20 Score=126.10 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=92.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCccceeeeeeeEEEEEeCCeEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYLEDRTVR 59 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 59 (170)
+|+++|+.++|||||+.+|+..... .+..+..+.+.....+.. ...+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~--~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET--EKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee--CCeE
Confidence 5899999999999999999742110 011122223333333333 4468
Q ss_pred EEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhh---HH---hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--cc
Q 030856 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQ 131 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~--~~ 131 (170)
+.+|||||+..+.......+..+|++++|+|++++.. +. .....+... ... ...|+++++||+|+... ..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccccccccH
Confidence 9999999998887777777888999999999987421 11 122222222 222 23688999999998632 11
Q ss_pred cC----HHHHHHHHHhc-----CCeEEEeecCCCCChH
Q 030856 132 VS----IEEGEAKSREL-----NVMFIETSAKAGFNIK 160 (170)
Q Consensus 132 ~~----~~~~~~~~~~~-----~~~~~~~S~~~~~~v~ 160 (170)
.. .++++.+.... +++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 12233333443 3679999999999987
No 220
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=117.57 Aligned_cols=160 Identities=20% Similarity=0.226 Sum_probs=106.8
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhhh
Q 030856 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR 72 (170)
Q Consensus 3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~ 72 (170)
+.+......|+++|.+|||||||||+|++++.-.....+.|.+.....+.+++. +.++|.|| .+.+.
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence 345556789999999999999999999998754444455554555555555553 78999999 44456
Q ss_pred hhhhhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--HH-HHHHHHhcCC
Q 030856 73 SLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EE-GEAKSRELNV 146 (170)
Q Consensus 73 ~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~--~~-~~~~~~~~~~ 146 (170)
.+...|+.. -.++++++|+..+..-.+. +.++.+.. .++|+++++||+|.....+... .. .+.+......
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 667777664 3578888998765332221 22222222 4799999999999876443321 11 1122222233
Q ss_pred e--EEEeecCCCCChHHHHHHHHhh
Q 030856 147 M--FIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 147 ~--~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
. ++..|+..+.|++++...|.+.
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHH
Confidence 3 8889999999999999988764
No 221
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-19 Score=124.44 Aligned_cols=160 Identities=18% Similarity=0.200 Sum_probs=105.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh------------hhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FRS 73 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------~~~ 73 (170)
+.+.++|+++|.||+|||||.|.+++.+.........+.+....-+ +.....++.|+||||.-. ..+
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 4577999999999999999999999998875554444433333333 333445899999999221 111
Q ss_pred hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc-------------ccC---HHHH
Q 030856 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR-------------QVS---IEEG 137 (170)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~-------------~~~---~~~~ 137 (170)
.....+.++|.+++++|++++...-. ...+..+..+ .++|-++|+||.|....+ +++ .+-.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 23344678999999999996422222 2223344444 378999999999975432 111 1112
Q ss_pred HHHHHhc---------CC----eEEEeecCCCCChHHHHHHHHhh
Q 030856 138 EAKSREL---------NV----MFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 138 ~~~~~~~---------~~----~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+++.... |+ .+|.+||++|+|++++.++|...
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq 269 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ 269 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence 2222111 12 48999999999999999998753
No 222
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=124.90 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=111.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hhhhhh---hhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPS---YIRDS 82 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~ 82 (170)
-.+.++|.|++|||||++++...+..-...+.++.......+.+++-. .+++-|.||.-+= +.+-.. .+++|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 457899999999999999999876553333333334433444444332 4889999993321 222222 25679
Q ss_pred cEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCC
Q 030856 83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAG 156 (170)
Q Consensus 83 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 156 (170)
+.++||+|++.+ +.|+.++....++..+.. .+.|.++|+||+|+.+.. .....++++...= .++++||+.+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence 999999999988 888888777777776654 578999999999985221 1224566666554 5999999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
++++++++.|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999998765
No 223
>PRK12736 elongation factor Tu; Reviewed
Probab=99.84 E-value=3.3e-19 Score=130.52 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=104.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..++++|+++|..++|||||+++|++.... .+..+..+.+.. ...+......+.++||||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHH
Confidence 456799999999999999999999863110 111222333332 23333344578999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCcccC---HHHHHHHHHhcC
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELN 145 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~ 145 (170)
+|.......+..+|++++|+|+.+...-+ ....+..+.. .++| +++++||+|+.+..+.. .++...+.+..+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 88777777778899999999998642211 1222222222 2577 67889999986432221 234555555554
Q ss_pred -----CeEEEeecCCCC--------ChHHHHHHHHhh
Q 030856 146 -----VMFIETSAKAGF--------NIKGCSPTIRRL 169 (170)
Q Consensus 146 -----~~~~~~S~~~~~--------~v~~~~~~l~~~ 169 (170)
++++++||++|. +++++++.|.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 589999999983 578888887654
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.83 E-value=4.8e-19 Score=129.76 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=102.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------C---CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------D---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|.+++|||||+++|++... + .+..+..+.+.. ...+.....++.++||||++
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~--~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTS--HVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEe--eeEEcCCCcEEEEEECCCHH
Confidence 35679999999999999999999986210 0 111222233332 22333344578999999998
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCccc---CHHHHHHHHHhcC
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSRELN 145 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v-vv~nK~D~~~~~~~---~~~~~~~~~~~~~ 145 (170)
+|.......+..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+..+. ..++++.+...++
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 887777777889999999999986422 122233333322 357755 67999998642221 1234555555543
Q ss_pred -----CeEEEeecCCCC----------ChHHHHHHHHh
Q 030856 146 -----VMFIETSAKAGF----------NIKGCSPTIRR 168 (170)
Q Consensus 146 -----~~~~~~S~~~~~----------~v~~~~~~l~~ 168 (170)
++++++|+.++. ++.++++.|.+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~ 200 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS 200 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence 689999999984 57788877765
No 225
>COG2262 HflX GTPases [General function prediction only]
Probab=99.83 E-value=6.2e-19 Score=125.30 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=109.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh---------hhhhhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~ 78 (170)
.-..|+++|..|+|||||+|++.+........-..+.+.....+.+.+ +..+.+.||.|.-. |++ .-..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence 347899999999999999999997665533333333444455554544 34688999999332 222 2223
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
...+|+++.|+|+++|...+.+..-...+......+.|+++|.||+|+..... .......... ..+.+||++|+|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~g 343 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEG 343 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcC
Confidence 56899999999999997777766665555555456799999999999764333 1111111222 589999999999
Q ss_pred hHHHHHHHHhhC
Q 030856 159 IKGCSPTIRRLI 170 (170)
Q Consensus 159 v~~~~~~l~~~i 170 (170)
++.+.+.|.+.+
T Consensus 344 l~~L~~~i~~~l 355 (411)
T COG2262 344 LDLLRERIIELL 355 (411)
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.83 E-value=4.9e-19 Score=129.76 Aligned_cols=146 Identities=16% Similarity=0.110 Sum_probs=96.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|..++|||||+++|++... +.+..+..+.+. ....++....++.+|||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 45689999999999999999999974310 011122333333 333344445678999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCcccC---HHHHHHHHHhcC
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVS---IEEGEAKSRELN 145 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v-vv~nK~D~~~~~~~~---~~~~~~~~~~~~ 145 (170)
+|.......+..+|++++|+|+.+...-+. ...+..+.. .++|.+ +++||+|+.+..+.. .++.+.++..++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 887766666778999999999986322221 222222322 256654 689999986533221 235566666654
Q ss_pred -----CeEEEeecCCCC
Q 030856 146 -----VMFIETSAKAGF 157 (170)
Q Consensus 146 -----~~~~~~S~~~~~ 157 (170)
++++++|+.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 227
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.83 E-value=3.8e-19 Score=120.32 Aligned_cols=114 Identities=20% Similarity=0.237 Sum_probs=78.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--C--------------CccceeeeeeeEEEEEeC--------CeEEEEEEEec
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSKTMYLE--------DRTVRLQLWDT 65 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~ 65 (170)
.+|+++|..++|||||+++|+..... . +..+..+..........+ +..+.+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999854211 0 001111111111122222 34688999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
||+.++......++..+|++++|+|+++....+.... +.... ..++|+++|+||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHH---HcCCCEEEEEECCCcc
Confidence 9999999999999999999999999997654443222 22222 2468999999999975
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.82 E-value=6.1e-19 Score=118.02 Aligned_cols=154 Identities=14% Similarity=0.166 Sum_probs=92.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeee-ee--eEEEEEeCCeEEEEEEEecCChhhhhhhhhhh-----hc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI-DF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR 80 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 80 (170)
+++|+++|.+|+|||||+|++.+...+.......+. .. ....+... ....+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999986554322222211 11 11111111 12368999999965432222222 56
Q ss_pred CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc-----------cCHHHHHHHHH----hc
Q 030856 81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-----------VSIEEGEAKSR----EL 144 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~-----------~~~~~~~~~~~----~~ 144 (170)
++|+++++.+. ++... ..++..+... +.|+++|+||+|+..... ...++.++.+. ..
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78998888542 23333 3444444443 578999999999843111 01112222222 22
Q ss_pred C---CeEEEeecC--CCCChHHHHHHHHhhC
Q 030856 145 N---VMFIETSAK--AGFNIKGCSPTIRRLI 170 (170)
Q Consensus 145 ~---~~~~~~S~~--~~~~v~~~~~~l~~~i 170 (170)
+ .+++.+|+. .+.++..+.+.+...|
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 2 388999998 6789999999987653
No 229
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=119.88 Aligned_cols=156 Identities=21% Similarity=0.213 Sum_probs=108.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--hhh-------hhhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRS-------LIPS 77 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~-------~~~~ 77 (170)
..-.+|++.|.||||||||++++.+.+..-...|.++.......+.. ...+++++||||.-+ ... ....
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 35678999999999999999999998877444555544555444433 346899999999221 111 1111
Q ss_pred hhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecC
Q 030856 78 YIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAK 154 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~ 154 (170)
.-.-.++++|++|.+.. -+.+.....+..+..... .|+++|+||+|....... +++......-+. ....+++.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence 22247899999999853 567777888888888874 899999999998654433 333333444444 57888888
Q ss_pred CCCChHHHHHHHHh
Q 030856 155 AGFNIKGCSPTIRR 168 (170)
Q Consensus 155 ~~~~v~~~~~~l~~ 168 (170)
.+.+++.....+..
T Consensus 320 ~~~~~d~~~~~v~~ 333 (346)
T COG1084 320 KGCGLDKLREEVRK 333 (346)
T ss_pred ehhhHHHHHHHHHH
Confidence 88888877655543
No 230
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.82 E-value=6.1e-19 Score=119.37 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=98.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCcc---ceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----hhhhhhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ---ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDS 82 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~ 82 (170)
||+++|+.+|||||+.+.++++..+.++. +|.. .....+. ......+.+||+||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 79999999999999999999887654432 2322 2222221 12335899999999875544 356678999
Q ss_pred cEEEEEEeCCChh---hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--cc----CHHHHHHHHHhcC---CeEEE
Q 030856 83 SVAVVVYDVASRQ---SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QV----SIEEGEAKSRELN---VMFIE 150 (170)
Q Consensus 83 d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~ 150 (170)
.++|||+|+.+.+ .+..+...+..+.+.. +++.+.++++|+|+..+. .. ..++..+.+...+ +.++.
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 9999999998443 3334444445455444 789999999999986421 11 1233444444555 78999
Q ss_pred eecCCCCChHHHHHHHHhhC
Q 030856 151 TSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~i 170 (170)
+|..+ ..+-+.+..+++.+
T Consensus 157 TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTT
T ss_pred ccCcC-cHHHHHHHHHHHHH
Confidence 99888 48999998888754
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=2.3e-18 Score=116.95 Aligned_cols=154 Identities=15% Similarity=0.171 Sum_probs=96.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccce-----------------------eeeeeeEEE-------------EEeC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQAT-----------------------IGIDFLSKT-------------MYLE 54 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~ 54 (170)
||+++|+.++|||||++++..+.++...... .+.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999975553211100 011100000 0011
Q ss_pred CeEEEEEEEecCChhhhhhhhhhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856 55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~ 132 (170)
.....+.+.|+||++.+.......+. .+|++++|+|+.++.. .....++..+.. .++|+++|+||+|+.++...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 22357899999999888665554444 6899999999876432 222333333332 36889999999998643222
Q ss_pred C--HHHHHHHHHh--------------------------cCCeEEEeecCCCCChHHHHHHHHh
Q 030856 133 S--IEEGEAKSRE--------------------------LNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 133 ~--~~~~~~~~~~--------------------------~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
. .++..+.... ..++++.+|+.+|+|++++...|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 1222222221 1238999999999999999988764
No 232
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.81 E-value=2e-18 Score=120.62 Aligned_cols=143 Identities=13% Similarity=0.166 Sum_probs=94.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---- 73 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 73 (170)
-.++|+++|.+|+|||||+|++++...... ..++.........+..++..+++.+|||||..+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999998766432 234444455555556667778999999999432211
Q ss_pred ----------------------hhhhhhc--CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 74 ----------------------LIPSYIR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 74 ----------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
.....+. .+|+++++++.+.. .+... ...+..+. ..+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 0001222 46788888887642 12111 22223332 2689999999999865
Q ss_pred C--cccCHHHHHHHHHhcCCeEEEeecCC
Q 030856 129 K--RQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 129 ~--~~~~~~~~~~~~~~~~~~~~~~S~~~ 155 (170)
. ........++.+..++++++.....+
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 3 22345667777888899888776543
No 233
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=4.2e-18 Score=118.53 Aligned_cols=117 Identities=23% Similarity=0.271 Sum_probs=79.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-C----------------Ccc---ceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-N----------------TYQ---ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~-~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
..+|+++|++|+|||||+++|+..... . ++. ...+.........+.....++.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 368999999999999999999853111 0 000 01122223333344555678999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~ 129 (170)
.++.......++.+|++++|+|+++..... ...++..... .++|+++++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 988887778889999999999998753222 2233333222 47899999999997553
No 234
>CHL00071 tufA elongation factor Tu
Probab=99.81 E-value=2.8e-18 Score=126.25 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=96.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|.+++|||||+++|++.... .+..+..+.+... ..+.....++.+.||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCCeEEEEEECCChH
Confidence 456799999999999999999999964210 1111223333222 2233344578899999998
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhcC
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN 145 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~ 145 (170)
++.......+..+|++++|+|+..... ......+..+.. .++| +++++||+|+.+..+. ..+++..+.+..+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 887777777889999999999885422 122222222222 3577 7788999998653321 1234555555443
Q ss_pred -----CeEEEeecCCCCC
Q 030856 146 -----VMFIETSAKAGFN 158 (170)
Q Consensus 146 -----~~~~~~S~~~~~~ 158 (170)
++++++|+.+|++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 FPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCcceEEEcchhhccc
Confidence 6899999999874
No 235
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=8.7e-18 Score=122.99 Aligned_cols=151 Identities=21% Similarity=0.254 Sum_probs=115.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC-eEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
.++.=|+++|.-..|||||+.++.............+-+....++..+. ..-.+.|.||||++.|..+...-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3556789999999999999999999888766566666666666665541 234689999999999999999999999999
Q ss_pred EEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC---------CeEEEeec
Q 030856 86 VVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSA 153 (170)
Q Consensus 86 i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~ 153 (170)
++|+++.+. ++.+. +......+.|+++++||+|..+ .+++....-..++| ..++++||
T Consensus 83 ILVVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA 152 (509)
T COG0532 83 ILVVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSA 152 (509)
T ss_pred EEEEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence 999999973 33333 2222335899999999999873 33333333333333 37999999
Q ss_pred CCCCChHHHHHHHH
Q 030856 154 KAGFNIKGCSPTIR 167 (170)
Q Consensus 154 ~~~~~v~~~~~~l~ 167 (170)
++|+|+++|+..+.
T Consensus 153 ~tg~Gi~eLL~~il 166 (509)
T COG0532 153 KTGEGIDELLELIL 166 (509)
T ss_pred cCCCCHHHHHHHHH
Confidence 99999999999876
No 236
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.79 E-value=2.5e-18 Score=127.28 Aligned_cols=150 Identities=18% Similarity=0.219 Sum_probs=101.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCccceeeeeeeEEEEEeC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (170)
..++++|+++|+.++|||||+.+|+.... + .+.....+.+. ......
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~--~~~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI--ALWKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEE--EEEEec
Confidence 35679999999999999999999874211 0 01111222222 223344
Q ss_pred CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHH-------hHHHHHHHHHHhcCCCCe-EEEEEeCCCC
Q 030856 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFL-------NTSKWIDEVRTERGSDVI-IVLVGNKTDL 126 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~vvv~nK~D~ 126 (170)
.....+.++|+||+++|.......+..+|++|+|+|+++. .|+ .....+... . ..++| +++++||+|+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~--~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F--TLGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H--HcCCCcEEEEEEcccC
Confidence 4557899999999999999999999999999999999862 232 222222222 1 23564 7888999997
Q ss_pred CCC--cc----cCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856 127 VEK--RQ----VSIEEGEAKSRELN-----VMFIETSAKAGFNIKG 161 (170)
Q Consensus 127 ~~~--~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 161 (170)
... .+ ...++++.+++..+ ++++++|+++|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 521 11 11456667777666 5799999999999853
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.79 E-value=2.4e-18 Score=128.36 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=96.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC--C--------------C-----------------ccceeeeeeeEEEE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD--N--------------T-----------------YQATIGIDFLSKTM 51 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~--~--------------~-----------------~~~~~~~~~~~~~~ 51 (170)
+....++|+++|..++|||||+++|+...-. . . ..+..+.+.....+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 3466799999999999999999999854221 0 0 00112223222222
Q ss_pred EeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 52 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 52 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
.....++.++||||++.+.......+..+|++++|+|+.....-+....+ .+....+ ..|+++++||+|+.+.+.
T Consensus 103 --~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg-~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 103 --STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLG-IKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred --ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhC-CCceEEEEEeeccccchh
Confidence 23345789999999988866666667999999999998754211111111 1222222 246888999999864332
Q ss_pred cCHH----HHHHHHHhc----CCeEEEeecCCCCChHHH
Q 030856 132 VSIE----EGEAKSREL----NVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 132 ~~~~----~~~~~~~~~----~~~~~~~S~~~~~~v~~~ 162 (170)
...+ +...+.+.. ..+++++||++|+|++++
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1112 222333333 368999999999998763
No 238
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.1e-18 Score=109.27 Aligned_cols=156 Identities=19% Similarity=0.248 Sum_probs=116.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
+.=|+++.|-.|+|||||++.|.+.+.. .+.||.- .......+.+ .+++.+|.+|+...+..|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 4568999999999999999999987653 2233321 1122233333 678999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHH------Hh--------cC---CeEE
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS------RE--------LN---VMFI 149 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~------~~--------~~---~~~~ 149 (170)
.+|+-+.+.|...+..++.+..... ..+|+++.+||+|.+.+. +.++.+... -. .+ +.++
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 9999999999999888888766553 689999999999987644 222222211 10 11 2567
Q ss_pred EeecCCCCChHHHHHHHHhhC
Q 030856 150 ETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~i 170 (170)
-||...+.+--+.|.|+.+.|
T Consensus 172 mcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEccCccceeeeehhhhc
Confidence 899999888888888887654
No 239
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.79 E-value=1.2e-18 Score=121.88 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=89.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCc------------------cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTY------------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 72 (170)
+|+++|.+|+|||||+++++........ ....+.......+.+ ....+.+|||||..++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence 5899999999999999999753211000 001111111122222 34678999999998888
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEE--
Q 030856 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE-- 150 (170)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-- 150 (170)
......+..+|++++|+|+++.........| ..+.. .++|.++++||+|..... ..+....+....+.++++
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 8888899999999999999876544433333 22222 468999999999986532 122333444445554443
Q ss_pred eecCCCCChHHH
Q 030856 151 TSAKAGFNIKGC 162 (170)
Q Consensus 151 ~S~~~~~~v~~~ 162 (170)
++..++.++..+
T Consensus 153 ip~~~~~~~~~~ 164 (268)
T cd04170 153 LPIGEGDDFKGV 164 (268)
T ss_pred ecccCCCceeEE
Confidence 345555554433
No 240
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.9e-18 Score=124.72 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=115.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CCCccceeeeeeeEEEEE-eCCeEEEEEEEecCChhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DNTYQATIGIDFLSKTMY-LEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~ 70 (170)
++-.|++|+..-..|||||.++|+...- .-+..+.+++..+...+. .++..+.+.++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5568899999999999999999885321 011222333333222222 235668999999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH-HHHHHHHHhcCCeEE
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-EEGEAKSRELNVMFI 149 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~ 149 (170)
|.......+..|+++++++|++..-.-+.+..++..+. .+..++.|+||+|+..++.-.. .+.+++-.....+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 99999999999999999999997655566665555443 4788999999999976553221 222233333344899
Q ss_pred EeecCCCCChHHHHHHHHhhC
Q 030856 150 ETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~i 170 (170)
.+||++|.|+++++++|++.|
T Consensus 214 ~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred EEEeccCccHHHHHHHHHhhC
Confidence 999999999999999999865
No 241
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=2.1e-18 Score=116.85 Aligned_cols=163 Identities=19% Similarity=0.332 Sum_probs=107.2
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEE-EEeCCeEEEEEEEecCChhh-------hhhhh
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAGQER-------FRSLI 75 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~-------~~~~~ 75 (170)
.....+++|+++|..|+|||||+|+|+++...+-..-..+.+..... ..+++ -.+.+||+||-++ |+...
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence 34567899999999999999999999976553221111111111111 11222 4689999999554 77888
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--------cccC-------HHHHHHH
Q 030856 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--------RQVS-------IEEGEAK 140 (170)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~--------~~~~-------~~~~~~~ 140 (170)
..++...|.++++.+..++. +..-..++..+.... -+.++++++|.+|.... ...+ .+.+...
T Consensus 112 ~d~l~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRA-LGTDEDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHHhhhccEEEEeccCCCcc-ccCCHHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 88999999999999998763 233344445554443 34889999999997643 1111 1222222
Q ss_pred HHhcC-C-eEEEeecCCCCChHHHHHHHHhhC
Q 030856 141 SRELN-V-MFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 141 ~~~~~-~-~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
.+... . |++.+|.+.++|++++...+++.+
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 22222 2 888899999999999999998754
No 242
>PRK00049 elongation factor Tu; Reviewed
Probab=99.78 E-value=2.2e-17 Score=120.98 Aligned_cols=157 Identities=16% Similarity=0.111 Sum_probs=101.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|..++|||||+++|++... +.+..+..+.+.. ...+.....++.+.||||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHH
Confidence 35679999999999999999999987311 0111223333333 23333344578899999998
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCcccC---HHHHHHHHHhc-
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVS---IEEGEAKSREL- 144 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v-vv~nK~D~~~~~~~~---~~~~~~~~~~~- 144 (170)
++.......+..+|++++|+|+.++.. ......+..+.. .++|.+ +++||+|+.+..+.. ..+...+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 887777777889999999999986422 122233333332 357865 589999986422211 12333444433
Q ss_pred ----CCeEEEeecCCCC----------ChHHHHHHHHh
Q 030856 145 ----NVMFIETSAKAGF----------NIKGCSPTIRR 168 (170)
Q Consensus 145 ----~~~~~~~S~~~~~----------~v~~~~~~l~~ 168 (170)
+++++++|++++. ++.++++.|.+
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~ 200 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS 200 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence 3689999999875 46677777764
No 243
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=115.36 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=109.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhhhhhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD 81 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 81 (170)
--+++++|.|++|||||+++|++........+.++....+..+.+++ ..+++.|+||.-+- ....-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 46899999999999999999999887655455555566666666555 67899999983321 1234455789
Q ss_pred CcEEEEEEeCCChhh-HHhHHHHHHHHHHhcC---C--------------------------------------------
Q 030856 82 SSVAVVVYDVASRQS-FLNTSKWIDEVRTERG---S-------------------------------------------- 113 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~---~-------------------------------------------- 113 (170)
||++++|.|+..+.. .+.+...+....-... +
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986554 5554444433211100 0
Q ss_pred ------------------CCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 114 ------------------DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 114 ------------------~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
=+|.++|.||.|+.. .++...+.+.. ..+.+||..++|++++.+.|.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 248899999999754 45555555555 889999999999999999988653
No 244
>PLN03126 Elongation factor Tu; Provisional
Probab=99.78 E-value=2.3e-17 Score=122.78 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=96.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|..++|||||+++|++... ..+..+..+.+.....+. ....++.++|+||++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~--~~~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE--TENRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe--cCCcEEEEEECCCHH
Confidence 45679999999999999999999995211 111222233333333332 334578999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhc-
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSREL- 144 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~- 144 (170)
+|.......+..+|++++|+|+.+...-+ ...++..+.. .++| +++++||+|+.+..+. ..++...+.+..
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 98887777788999999999988643222 2333333322 3577 7788999998653221 122444555543
Q ss_pred ----CCeEEEeecCCCCC
Q 030856 145 ----NVMFIETSAKAGFN 158 (170)
Q Consensus 145 ----~~~~~~~S~~~~~~ 158 (170)
+++++++|+.++.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 46899999988753
No 245
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.78 E-value=1.7e-17 Score=124.88 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=80.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC--C--C-------------C---ccceeeeeeeEEEEEeCCeEEEEEEEecC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D--N-------------T---YQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~--~--~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (170)
.+..+|+++|++++|||||.++|+...- . . + .....+..+......+....+++.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4668999999999999999999974111 0 0 0 00111222333333344455789999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
|+.++......++..+|++|+|+|+++..... ...++..... .++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh---cCCCEEEEEECCccc
Confidence 99999888888899999999999998743221 2333333222 479999999999975
No 246
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.78 E-value=8.8e-18 Score=123.45 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=93.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--C-------------------------------CccceeeeeeeEEEEEeCCe
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD--N-------------------------------TYQATIGIDFLSKTMYLEDR 56 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~~~ 56 (170)
++|+++|+.++|||||+++|+...-. . +.....+.+.....+. ..
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~--~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS--TD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc--cC
Confidence 58999999999999999999743211 0 0011122233223332 33
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC---
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--- 133 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--- 133 (170)
..++.++||||++.|.......+..+|++++|+|+.....-+.... +. +....+ ..++++++||+|+.+.....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~-~~~~~~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SY-IASLLG-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HH-HHHHcC-CCcEEEEEEecccccchHHHHHH
Confidence 4578999999999887766677889999999999875432222111 11 222222 23588899999986433211
Q ss_pred -HHHHHHHHHhcC---CeEEEeecCCCCChHH
Q 030856 134 -IEEGEAKSRELN---VMFIETSAKAGFNIKG 161 (170)
Q Consensus 134 -~~~~~~~~~~~~---~~~~~~S~~~~~~v~~ 161 (170)
.++...+.+..+ ++++++||++|+|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122333334444 4799999999999885
No 247
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.78 E-value=2e-17 Score=117.26 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=54.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC------ccceeeeeeeEEE---------------EEeCC-eEEEEEEEecCCh-
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKFDNT------YQATIGIDFLSKT---------------MYLED-RTVRLQLWDTAGQ- 68 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~~~~------~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~- 68 (170)
|+++|.|++|||||++++++...... ..|..+..+.... ...++ ..+++++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999998765421 2233332222110 00122 3467999999996
Q ss_pred ---hhhhhhhhh---hhcCCcEEEEEEeCC
Q 030856 69 ---ERFRSLIPS---YIRDSSVAVVVYDVA 92 (170)
Q Consensus 69 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 92 (170)
++...+... .++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444444 488999999999997
No 248
>PLN03127 Elongation factor Tu; Provisional
Probab=99.77 E-value=2.9e-17 Score=121.62 Aligned_cols=159 Identities=16% Similarity=0.100 Sum_probs=99.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcC------CC----------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYD------KF----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
...+.++|+++|..++|||||+++|.+. .. +.+..+..+.+..... +.....++.++||||+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPGH 134 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCCc
Confidence 3456899999999999999999999732 10 1112233333433333 3334457899999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCcccC---HHHHHHHHHhc
Q 030856 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSREL 144 (170)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~~---~~~~~~~~~~~ 144 (170)
..|.......+..+|++++|+|+.+...- .....+..+.. .++| +++++||+|+.+..+.. ..+.+++....
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 88877666667789999999998764221 12222222222 3578 57889999986532211 11222333322
Q ss_pred -----CCeEEEeecC---CCCC-------hHHHHHHHHhh
Q 030856 145 -----NVMFIETSAK---AGFN-------IKGCSPTIRRL 169 (170)
Q Consensus 145 -----~~~~~~~S~~---~~~~-------v~~~~~~l~~~ 169 (170)
.++++++|+. ++.| +.+++++|.+.
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 3588888876 4555 67777777653
No 249
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=2.8e-17 Score=114.55 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=77.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 72 (170)
+|+++|.+++|||||+++|+..... .+..+..+.+.....+.+ ...++.++||||..++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 6899999999999999999742110 111122233333333333 34678999999999888
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
..+...+..+|++++|+|+.+...-+. ...+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888899999999999999986432222 222233322 4689999999999864
No 250
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.2e-17 Score=120.09 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=118.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.++.-|.++|.-..|||||++++.....-......++.......++.+. +-+++|.||||+..|..|...-..-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 4567789999999999999999998877666566666666666666663 368999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC---------CeEEEeecCCCC
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF 157 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~ 157 (170)
+|+.+.|.-.-+.+ +.+......++|+++.+||+|.++ .+.+...+....+| .+++++||++|+
T Consensus 230 LVVAadDGVmpQT~----EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL----EAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCCccHhHH----HHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 99999874222221 223344446899999999999754 33444444444433 489999999999
Q ss_pred ChHHHHHHHH
Q 030856 158 NIKGCSPTIR 167 (170)
Q Consensus 158 ~v~~~~~~l~ 167 (170)
|++.|.+++.
T Consensus 303 nl~~L~eail 312 (683)
T KOG1145|consen 303 NLDLLEEAIL 312 (683)
T ss_pred ChHHHHHHHH
Confidence 9999988875
No 251
>PRK13351 elongation factor G; Reviewed
Probab=99.77 E-value=1.5e-17 Score=129.63 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=83.8
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-------------CCccc---eeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------NTYQA---TIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
++..+..+|+++|..++|||||+++|+..... .++.+ ..+.+.............++.+|||||
T Consensus 3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG 82 (687)
T PRK13351 3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPG 82 (687)
T ss_pred CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCC
Confidence 34556789999999999999999999853210 00000 011111111122223457899999999
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
+.++......++..+|++++|+|+++....+....| ..+.. .++|+++++||+|+..
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 999998899999999999999999987665554444 33322 4689999999999863
No 252
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.77 E-value=1.8e-17 Score=122.85 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=97.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC--CC-----------------------------CCccceeeeeeeEEEEEeC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--FD-----------------------------NTYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (170)
..+.++|+++|+.++|||||+.+|+... .. .+..+..+.+.. .....
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~--~~~~~ 81 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIA--LWKFE 81 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEee--eEEEc
Confidence 3567999999999999999999988521 10 011122222332 23334
Q ss_pred CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---hH---HhHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030856 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF---LNTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~ 127 (170)
.....+.|+|+||+.+|.......+..+|++++|+|++... .+ ....+.+..+.. .++| +++++||+|..
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDK 158 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 45578999999999999888888889999999999998642 11 122222222222 3565 67899999953
Q ss_pred C--CcccC----HHHHHHHHHhc-----CCeEEEeecCCCCChHH
Q 030856 128 E--KRQVS----IEEGEAKSREL-----NVMFIETSAKAGFNIKG 161 (170)
Q Consensus 128 ~--~~~~~----~~~~~~~~~~~-----~~~~~~~S~~~~~~v~~ 161 (170)
. ..+.. .++...+.... +++++++|+.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2 11111 23334443333 35899999999999864
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.77 E-value=2.7e-17 Score=127.03 Aligned_cols=153 Identities=21% Similarity=0.218 Sum_probs=95.5
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------ccceeeeeeeEEE
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---------------------------------YQATIGIDFLSKT 50 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~ 50 (170)
......++|+++|.+++|||||+++|+.....-. .....+.+.....
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 3445679999999999999999999996432100 0011112222222
Q ss_pred EEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 51 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 51 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
+ .....++.++||||++.+.......+..+|++++|+|+.....-+. ...+..+.. . ...++++++||+|+.+..
T Consensus 99 ~--~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~-~-~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 99 F--ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASL-L-GIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred E--ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHH-h-CCCeEEEEEEecccccch
Confidence 2 2233568899999998887666667889999999999875422111 111122222 2 135788899999986422
Q ss_pred ccCH----HHHHHHHHhcCC---eEEEeecCCCCChHH
Q 030856 131 QVSI----EEGEAKSRELNV---MFIETSAKAGFNIKG 161 (170)
Q Consensus 131 ~~~~----~~~~~~~~~~~~---~~~~~S~~~~~~v~~ 161 (170)
.... .+...+....++ +++++||++|.|+++
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2111 223333444453 699999999999874
No 254
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=115.36 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=103.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hhh---hhhhhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSL---IPSYIRDS 82 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~ 82 (170)
-|.++|.|++|||||++++...+.. ..|..|+ .....-.+.. ...-.+.+-|.||.-+- ..+ --..+.+|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTT-L~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTT-LVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCcccc-ccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3689999999999999999987654 4443333 2222222222 23346889999993321 111 12225679
Q ss_pred cEEEEEEeCCChh---hHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe-EEEeecCCC
Q 030856 83 SVAVVVYDVASRQ---SFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAG 156 (170)
Q Consensus 83 d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~ 156 (170)
.+++.|+|++..+ ..++......++..+.. .+.|.++|+||+|+....+......+.+.+..+.. ++++|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 9999999998533 35555555555555532 57899999999997655444444455555555653 223999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
+|++++...+.+.
T Consensus 319 ~g~~~L~~~~~~~ 331 (369)
T COG0536 319 EGLDELLRALAEL 331 (369)
T ss_pred cCHHHHHHHHHHH
Confidence 9999999888764
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.76 E-value=3.7e-18 Score=110.99 Aligned_cols=120 Identities=18% Similarity=0.351 Sum_probs=74.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhh---hhcCCcE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS---YIRDSSV 84 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~ 84 (170)
++-.|+++|+.|+|||+|+.+|..+.......+. ...... .. .......+.++|+||+.+.+..... +...+.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~-~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAY-NV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEEC-CG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceE-Ee-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 4567999999999999999999998654433322 211111 10 1223346899999999988775444 4788999
Q ss_pred EEEEEeCCC-hhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCc
Q 030856 85 AVVVYDVAS-RQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 85 ~i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~ 130 (170)
||||+|.+. +..+....+++-.+.... ...+|+++++||.|+...+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999999974 445666655555543332 3679999999999997654
No 256
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.75 E-value=6.6e-17 Score=119.63 Aligned_cols=162 Identities=17% Similarity=0.108 Sum_probs=102.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEEE---------------EeC-------------
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTM---------------YLE------------- 54 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~------------- 54 (170)
...+++|+++|.-..|||||+.+|.+.... .+..+..+.+...... ...
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 456799999999999999999999974331 1111111111000000 000
Q ss_pred ---CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 55 ---DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 55 ---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
.....+.++|+||++.|.......+..+|++++|+|+.++.......+.+. +....+ -.++++|+||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccCHHH
Confidence 002368999999999988777777889999999999986311111222222 222221 246888999999864322
Q ss_pred c--CHHHHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 132 V--SIEEGEAKSRE---LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 132 ~--~~~~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
. ..++.+++... .+.+++++||++|.|+++|++.|.+.
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 1 12233333332 35699999999999999999998753
No 257
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.4e-17 Score=115.17 Aligned_cols=154 Identities=23% Similarity=0.287 Sum_probs=104.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccceeeeeeeEEEEEe
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYL 53 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 53 (170)
....+++++++|+..+|||||+-+|+.+.- .++..+..+++..... .
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~--f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSK--F 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEE--e
Confidence 346789999999999999999999986411 1111222233333333 3
Q ss_pred CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---h--HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---S--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
+...+.++|.|+||+.+|-.....-+..+|+.|+|+|+.+.+ + .+-..+....+.+..+ -..+++++||+|..+
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~ 159 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS 159 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc
Confidence 334467999999999888888888888999999999998763 1 1223344444555544 345788889999987
Q ss_pred CcccCHHHHH----HHHHhcC-----CeEEEeecCCCCChHH
Q 030856 129 KRQVSIEEGE----AKSRELN-----VMFIETSAKAGFNIKG 161 (170)
Q Consensus 129 ~~~~~~~~~~----~~~~~~~-----~~~~~~S~~~~~~v~~ 161 (170)
.++-..++.. .+.+..| ++|+++|+..|+|+.+
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 5544433332 2333333 5799999999999864
No 258
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=5e-17 Score=117.38 Aligned_cols=162 Identities=18% Similarity=0.156 Sum_probs=120.9
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CCCccceeeeeeeEEEEEe---CCeEEEEEEEe
Q 030856 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DNTYQATIGIDFLSKTMYL---EDRTVRLQLWD 64 (170)
Q Consensus 3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D 64 (170)
.++..+-.|..|+..-..|||||..+++.... +-+..+..++..+.....+ ++..+.++++|
T Consensus 3 ~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlID 82 (603)
T COG0481 3 FTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLID 82 (603)
T ss_pred ccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcC
Confidence 44555667889999999999999999885311 1123344444444444433 45789999999
Q ss_pred cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc
Q 030856 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL 144 (170)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (170)
|||+-+|.-.....+..|-+.++++|++..-.-+.+.+.+..+. .+.-++-|+||+|+..+... .-.++.....
T Consensus 83 TPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adpe--rvk~eIe~~i 156 (603)
T COG0481 83 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADPE--RVKQEIEDII 156 (603)
T ss_pred CCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCHH--HHHHHHHHHh
Confidence 99999998888888999999999999998766666777666654 36778889999999754432 2233444455
Q ss_pred CC---eEEEeecCCCCChHHHHHHHHhhC
Q 030856 145 NV---MFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 145 ~~---~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
|+ ..+.|||++|.|++++++.|+++|
T Consensus 157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 157 GIDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CCCcchheeEecccCCCHHHHHHHHHhhC
Confidence 65 679999999999999999999865
No 259
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.74 E-value=1.8e-16 Score=97.43 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=68.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh---------hhhhhhhhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR 80 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 80 (170)
+|+++|.+|+|||||+|+|++.... ....+..+..........++.. +.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999986432 2222223223333444455544 579999995321 112333357
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030856 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK 123 (170)
.+|++++|+|.+++.. +.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999877322 22333334442 57999999998
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.74 E-value=1.5e-16 Score=106.50 Aligned_cols=156 Identities=10% Similarity=0.115 Sum_probs=94.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCc--cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh--------h---hh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------L---IP 76 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~ 76 (170)
++|+++|.+|+|||||+|++++....... .+..+.+.........+ .++.++||||..+... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 58999999999999999999987654222 12222233333333333 4789999999543211 1 11
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCccc------CHHHHHHHHHhcCCeE
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELNVMF 148 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 148 (170)
....+.|++++|+++.+. +- .....+..+...+++ -.+++++.|+.|......+ .....+.+.+..+-.+
T Consensus 79 ~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 124578999999998762 21 223334444444432 2468888999997543221 1234455555545445
Q ss_pred EEee-----cCCCCChHHHHHHHHhh
Q 030856 149 IETS-----AKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 149 ~~~S-----~~~~~~v~~~~~~l~~~ 169 (170)
+..+ +..+.+++++++.+.+.
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~ 182 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESM 182 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHH
Confidence 4444 45577888888887653
No 261
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.3e-17 Score=119.41 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=107.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-hhh--------hhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRS--------LIP 76 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~--------~~~ 76 (170)
.+.++|+|+|+||+|||||+|.|...... .+..+.++.|.....++++| +++.+.||+|..+ -.. ..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 34689999999999999999999987665 56677777788888887766 6789999999554 111 123
Q ss_pred hhhcCCcEEEEEEeCC--ChhhHHhHHHHHHHHHHhc------CCCCeEEEEEeCCCCCCC-cccCHHHHHHH-HHhc-C
Q 030856 77 SYIRDSSVAVVVYDVA--SRQSFLNTSKWIDEVRTER------GSDVIIVLVGNKTDLVEK-RQVSIEEGEAK-SREL-N 145 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~------~~~~~~vvv~nK~D~~~~-~~~~~~~~~~~-~~~~-~ 145 (170)
..+..+|++++|+|+. +-++-..+...+.....-. ..+.+++++.||.|+... ++..-.-.... +..+ .
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV 423 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence 3467899999999983 3232223333333332211 134789999999998654 12111000111 1111 1
Q ss_pred C-eEEEeecCCCCChHHHHHHHHhh
Q 030856 146 V-MFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 146 ~-~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
. ...++|+++++|++.+.+.+.+.
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHH
Confidence 2 45569999999999999988754
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.73 E-value=2.6e-16 Score=122.63 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=95.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC----C--------------CccceeeeeeeEEEEEeCCeEEEEEE
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD----N--------------TYQATIGIDFLSKTMYLEDRTVRLQL 62 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i 62 (170)
|......+-.+|+++|.+++|||||+++|++.... . +..+..+.+.....+.++ ..++.+
T Consensus 2 ~~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~l 79 (689)
T TIGR00484 2 ARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINI 79 (689)
T ss_pred CCcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEE
Confidence 44555666789999999999999999999742111 0 001222333333334443 467999
Q ss_pred EecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH
Q 030856 63 WDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR 142 (170)
Q Consensus 63 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~ 142 (170)
|||||+.++.......+..+|++++|+|+++....+....| ..+.. .++|+++++||+|+..... ......+..
T Consensus 80 iDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~~~--~~~~~~i~~ 153 (689)
T TIGR00484 80 IDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTGANF--LRVVNQIKQ 153 (689)
T ss_pred EECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCCCCH--HHHHHHHHH
Confidence 99999998888888889999999999999875444433222 22322 3689999999999875331 122333333
Q ss_pred hcCC----eEEEeecCCC
Q 030856 143 ELNV----MFIETSAKAG 156 (170)
Q Consensus 143 ~~~~----~~~~~S~~~~ 156 (170)
..+. ..+++|+..+
T Consensus 154 ~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 154 RLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HhCCCceeEEeccccCCC
Confidence 3332 3566666555
No 263
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.3e-16 Score=104.19 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=104.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc---CCcE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSV 84 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~ 84 (170)
++-.|+++|+.+||||+|+-.|..+.......+-.+ + .......+ -.++++|.||+.+.+.....+++ .+-+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep-n--~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP-N--EATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeeeeecc-c--eeeEeecC--cceEEEeCCCcHHHHHHHHHHcccccccee
Confidence 346799999999999999999998855433222111 1 11221222 23799999999999998888888 6899
Q ss_pred EEEEEeCCC-hhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCcccCH------HHH-----------------
Q 030856 85 AVVVYDVAS-RQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSI------EEG----------------- 137 (170)
Q Consensus 85 ~i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~~~~~------~~~----------------- 137 (170)
++||+|..- +.-..++..++-.+.... ..+.|+++++||.|+..++.... .+.
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed 191 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDED 191 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 999999763 333444445444443333 36789999999999864322100 000
Q ss_pred -------------HHHH--HhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 138 -------------EAKS--RELNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 138 -------------~~~~--~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
.+|+ ....+.|.++|++++ +++++-+|+.+++
T Consensus 192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0011 112457899999999 8999999998864
No 264
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.73 E-value=2e-16 Score=109.54 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=118.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEE--eCCeEEEEEEEecCChhhhhhhhhhhhcCC---
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY--LEDRTVRLQLWDTAGQERFRSLIPSYIRDS--- 82 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~--- 82 (170)
..-+|+++|..|+||||||.+|.+.. ...+..+.++....+. ..+...++.+|-..|...+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 44689999999999999999999875 3334444444444332 233456788999999887777777666654
Q ss_pred -cEEEEEEeCCChh-hHHhHHHHHHHHHHhcCC-----------------------------------------------
Q 030856 83 -SVAVVVYDVASRQ-SFLNTSKWIDEVRTERGS----------------------------------------------- 113 (170)
Q Consensus 83 -d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~----------------------------------------------- 113 (170)
.++|++.|+++|. -++.++.|...+..+...
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 4889999999994 466778887665443221
Q ss_pred --------------CCeEEEEEeCCCCC----CC---cc----cCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 114 --------------DVIIVLVGNKTDLV----EK---RQ----VSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 114 --------------~~~~vvv~nK~D~~----~~---~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
++|++||+||+|.. .+ +. .-...++.||.++|...+.+|+++..|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 67999999999983 11 11 2245678899999999999999999999999999987
Q ss_pred hC
Q 030856 169 LI 170 (170)
Q Consensus 169 ~i 170 (170)
++
T Consensus 288 r~ 289 (473)
T KOG3905|consen 288 RS 289 (473)
T ss_pred Hh
Confidence 53
No 265
>PRK12739 elongation factor G; Reviewed
Probab=99.72 E-value=4.3e-16 Score=121.38 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=82.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccceeeeeeeEEEEEeCCeEEEEEEEecC
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (170)
...+-.+|+++|.+++|||||+++|+..... .+..+..+.+.....+.++ ..++.++|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTP 81 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTP 81 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCC
Confidence 4456789999999999999999999753110 0112233333334444443 4678999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
|+.++.......+..+|++++|+|+.+...-+.. ..+..+.. .++|+++++||+|+..
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9998888888889999999999999865332222 22222222 4689999999999863
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.72 E-value=5.9e-16 Score=112.91 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=55.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEE---------------------eC-CeEEEEEEEecCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LE-DRTVRLQLWDTAG 67 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~g 67 (170)
++|+++|.|++|||||+|+|++........+..+.+....... .+ ....++++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998766532222222222211111 11 1236789999999
Q ss_pred h----hhhhhhhhhh---hcCCcEEEEEEeCC
Q 030856 68 Q----ERFRSLIPSY---IRDSSVAVVVYDVA 92 (170)
Q Consensus 68 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 92 (170)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2233344444 78999999999997
No 267
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.72 E-value=1.2e-16 Score=120.43 Aligned_cols=119 Identities=21% Similarity=0.247 Sum_probs=81.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--CCC--C----------------CccceeeeeeeEEEEEeCCeEEEEEEEec
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFD--N----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~--~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (170)
..+..+|+++|.+++|||||+++|+.. ... . ......+..+......++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 346789999999999999999998632 110 0 00112233333344445555688999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
||+.++.......+..+|++|+|+|+++.-. .....++..... .++|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9999888877778899999999999986411 112333333222 4689999999999854
No 268
>PRK09866 hypothetical protein; Provisional
Probab=99.69 E-value=3.8e-15 Score=112.18 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=72.4
Q ss_pred EEEEEEecCChhh-----hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856 58 VRLQLWDTAGQER-----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 58 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~ 132 (170)
..+.|.||||... ........+..+|+++||+|..+..+..+ ...+..+.. .+...|+++|+||+|..+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk-~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA-VGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh-cCCCCCEEEEEEcccCCCcccc
Confidence 3578999999653 22234456899999999999986433222 222233333 2223699999999998543332
Q ss_pred CHHHHHHHHHhc----C---CeEEEeecCCCCChHHHHHHHHh
Q 030856 133 SIEEGEAKSREL----N---VMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 133 ~~~~~~~~~~~~----~---~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
..+....+.... + ..++++||++|.|++++++.|.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 244444443211 2 27999999999999999999876
No 269
>PRK00007 elongation factor G; Reviewed
Probab=99.68 E-value=1.9e-15 Score=117.82 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=94.2
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccceeeeeeeEEEEEeCCeEEEEEE
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQL 62 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i 62 (170)
|...+..+-.+|+++|.+++|||||+++|++.... .+..+..+.+.....+.+. ..++.+
T Consensus 2 ~~~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~l 79 (693)
T PRK00007 2 ARETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINI 79 (693)
T ss_pred CCcCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEE
Confidence 34444566789999999999999999999742110 0012233334334444443 467899
Q ss_pred EecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH
Q 030856 63 WDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR 142 (170)
Q Consensus 63 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~ 142 (170)
+||||+.++.......+..+|++++|+|+...-.-+....| ..+.. .+.|.++++||+|+.... .....+++..
T Consensus 80 iDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~ 153 (693)
T PRK00007 80 IDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKD 153 (693)
T ss_pred EeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHH
Confidence 99999988877777788999999999998765333332222 22222 368889999999987533 1222333333
Q ss_pred hcCC----eEEEeecCCC
Q 030856 143 ELNV----MFIETSAKAG 156 (170)
Q Consensus 143 ~~~~----~~~~~S~~~~ 156 (170)
..+. ..+++|+..+
T Consensus 154 ~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 154 RLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HhCCCeeeEEecCccCCc
Confidence 3332 4566666655
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.67 E-value=7.9e-16 Score=92.22 Aligned_cols=136 Identities=21% Similarity=0.272 Sum_probs=95.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----hhhhhhhhhhcCCcEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i 86 (170)
|++++|..|+|||||.+++.+... .+..|..+++ ... -.+||||.- .+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 689999999999999999987654 2223333221 111 256999832 33333444567899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 165 (170)
++-+++++++--.. .+... -..|++=|++|.|+.+. .+.+..+++..+-|. ++|++|+.++.|+++++..
T Consensus 70 ~v~~and~~s~f~p-----~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFPP-----GFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCCc-----ccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999987542110 11111 23558888899999763 345777888888898 9999999999999999999
Q ss_pred HHh
Q 030856 166 IRR 168 (170)
Q Consensus 166 l~~ 168 (170)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 864
No 271
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.66 E-value=5.5e-15 Score=117.76 Aligned_cols=142 Identities=21% Similarity=0.193 Sum_probs=94.9
Q ss_pred CCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe-----------E-----EEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 20 VGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-----------T-----VRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 20 ~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
++||||++++.+...........+.+.....+..+.. . -.+.||||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4599999999998776554555544444443333210 0 13899999999999888888888999
Q ss_pred EEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC------------HHH-HHHH-------
Q 030856 84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS------------IEE-GEAK------- 140 (170)
Q Consensus 84 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~------------~~~-~~~~------- 140 (170)
++++|+|+++ +.+++.+. .+.. .++|+++|+||+|+....... .+. ..++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999986 34444332 2222 368999999999986422110 000 0000
Q ss_pred ---HHh---------------cCCeEEEeecCCCCChHHHHHHHHh
Q 030856 141 ---SRE---------------LNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 141 ---~~~---------------~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
... ..++++++||++|+|+++++.+|..
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 011 1358999999999999999988753
No 272
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.66 E-value=7.1e-15 Score=108.82 Aligned_cols=161 Identities=20% Similarity=0.298 Sum_probs=115.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC--CeEEEEEEEecCChhhhhhhhhhhhcC---
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRD--- 81 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 81 (170)
...-+|+|+|..++|||||+.+|.+.. .+.++.+.++....+.-+ ....++.+|.+.|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345789999999999999999987643 334555666655554322 234578999999877777776665543
Q ss_pred -CcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCC----------------------------------------------
Q 030856 82 -SSVAVVVYDVASRQS-FLNTSKWIDEVRTERGS---------------------------------------------- 113 (170)
Q Consensus 82 -~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~---------------------------------------------- 113 (170)
.-.+++|.|.+.|.. ++.+..|+..+..+...
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 358999999999855 44556665443221100
Q ss_pred ----------------CCeEEEEEeCCCCCCC----c-------ccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 114 ----------------DVIIVLVGNKTDLVEK----R-------QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 114 ----------------~~~~vvv~nK~D~~~~----~-------~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
++|++||++|+|.... . ..-...++.+|..+|+.++.+|+++..+++.+..+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 4799999999997421 1 122355788889999999999999999999999998
Q ss_pred HhhC
Q 030856 167 RRLI 170 (170)
Q Consensus 167 ~~~i 170 (170)
.+.+
T Consensus 260 ~h~l 263 (472)
T PF05783_consen 260 LHRL 263 (472)
T ss_pred HHHh
Confidence 8753
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.65 E-value=7.9e-15 Score=114.30 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=73.7
Q ss_pred EcCCCCCHHHHHHHHhcCCCC----C--------------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhh
Q 030856 15 LGDQSVGKTSIITRFMYDKFD----N--------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 76 (170)
Q Consensus 15 ~G~~~~GKStll~~l~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 76 (170)
+|++++|||||+++|+..... . +..+..+.......+.+ ..+.+.+|||||+.++.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence 699999999999999643211 0 00122222222333333 347899999999998888888
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
..+..+|++++++|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999876554443333 22222 468999999999975
No 274
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.65 E-value=1.6e-15 Score=110.33 Aligned_cols=161 Identities=19% Similarity=0.153 Sum_probs=113.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hh-----hhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RS-----LIP 76 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~-----~~~ 76 (170)
+.+..++++||.|++|||||+|.+........+.+.++....... .+....+++++||||.-+. +. .+.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 567789999999999999999999887776444444443333333 2334568899999993321 11 112
Q ss_pred hhhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHH---HHHHHHhcCCeEEEe
Q 030856 77 SYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE---GEAKSRELNVMFIET 151 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~ 151 (170)
...+--.+++|+.|++.. .|.......+..+...+ .+.|+++|+||+|+.....++.+. .+.....-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 223335689999999864 46677777777787776 589999999999998766665433 333344455899999
Q ss_pred ecCCCCChHHHHHHHHhh
Q 030856 152 SAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 152 S~~~~~~v~~~~~~l~~~ 169 (170)
|+.+.+|+-++....++.
T Consensus 322 S~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEA 339 (620)
T ss_pred cccchhceeeHHHHHHHH
Confidence 999999998877766553
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.64 E-value=3e-14 Score=99.80 Aligned_cols=123 Identities=13% Similarity=0.165 Sum_probs=73.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-------hh
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP 76 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~ 76 (170)
++.+.++|+++|.+|+||||++|++++..... +...+.+........... +.++.++||||..+.... ..
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 34678999999999999999999999876531 111222222222222233 467999999996543221 12
Q ss_pred hhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCC
Q 030856 77 SYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK 129 (170)
Q Consensus 77 ~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvv~nK~D~~~~ 129 (170)
.++ .+.|+++||..+.....-+.....+..+...++. -.+++++.|+.|....
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 122 2689999996654321111223344444444432 2468999999997643
No 276
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.63 E-value=5e-15 Score=107.00 Aligned_cols=158 Identities=17% Similarity=0.208 Sum_probs=113.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC--------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 74 (170)
-.+|+|+.....|||||++.|+.+.-. +......+++...+...+....+++.|.||||+.+|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 468999999999999999999976331 122333455666666666666789999999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC-HHHHHHHH-------HhcCC
Q 030856 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKS-------RELNV 146 (170)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~ 146 (170)
.+..+.-.|++++++|+.+... ...+-. +.+....+.+.++|+||+|...++... .++...+. .+.++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpM-PQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPM-PQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCC-Cchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 9999999999999999987422 222221 222333567778888999998765421 12222222 24567
Q ss_pred eEEEeecCCCC----------ChHHHHHHHHhhC
Q 030856 147 MFIETSAKAGF----------NIKGCSPTIRRLI 170 (170)
Q Consensus 147 ~~~~~S~~~~~----------~v~~~~~~l~~~i 170 (170)
|++..|++.|. ++.-+|+.|.+.+
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 99999998775 5788899888764
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.63 E-value=3.7e-14 Score=97.70 Aligned_cols=121 Identities=16% Similarity=0.189 Sum_probs=73.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC-ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----------h
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------L 74 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~ 74 (170)
...+++|+++|.+|+|||||+|++++...... .....+..........++ .++.+|||||..+... .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 45679999999999999999999999765321 122222233333333333 5789999999654310 1
Q ss_pred hhhhhc--CCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCC
Q 030856 75 IPSYIR--DSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVEK 129 (170)
Q Consensus 75 ~~~~~~--~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~ 129 (170)
...++. ..|+++++..++... ... ....++.+...++.+ .++++|.||+|...+
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 222333 578888887665421 222 133444454444322 468999999998643
No 278
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.63 E-value=1.5e-14 Score=106.87 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=118.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+-+.+.++|+.++|||.+++.++++.+..++..+....+........+....+.+.|.+-. ....+.... ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 345689999999999999999999999888766666666666666666676667778887653 222222222 679999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~ 164 (170)
+++||.+++.+|+.+...++.-... ...|+++|++|+|+.+..+...-...++++++++ +.+..|++.... .++|.
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~ 576 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI 576 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence 9999999999999987765544333 6899999999999987655443344889999998 667778775333 78888
Q ss_pred HHHh
Q 030856 165 TIRR 168 (170)
Q Consensus 165 ~l~~ 168 (170)
.|+.
T Consensus 577 kL~~ 580 (625)
T KOG1707|consen 577 KLAT 580 (625)
T ss_pred HHHH
Confidence 7764
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.62 E-value=1.6e-14 Score=96.52 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=63.9
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~ 137 (170)
....++++.|..-...... . -+|.+|.|+|+.+.++... .....+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 3566778888432122211 1 2688999999987554321 111111 122378889999975323334444
Q ss_pred HHHHHh--cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 138 EAKSRE--LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 138 ~~~~~~--~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+..+. .+.+++++|+++|+|+++++++|.++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 444544 45699999999999999999999875
No 280
>PTZ00258 GTP-binding protein; Provisional
Probab=99.62 E-value=2.3e-14 Score=103.77 Aligned_cols=86 Identities=19% Similarity=0.162 Sum_probs=58.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhh-
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER- 70 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 70 (170)
...++|+++|.||+|||||+|+|.+........|..+.+.....+.+++. ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45689999999999999999999887665443455444444444433322 23589999999432
Q ss_pred ------hhhhhhhhhcCCcEEEEEEeCC
Q 030856 71 ------FRSLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 71 ------~~~~~~~~~~~~d~~i~v~d~~ 92 (170)
........++++|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112223367899999999973
No 281
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.61 E-value=4.4e-15 Score=102.29 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=79.2
Q ss_pred hhhhhhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe
Q 030856 69 ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (170)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
+++..+.+.++.++|.+++|||+++|. +++.+..|+..+.. .++|+++|+||+|+.+.+....+.++.+. ..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 556777888999999999999999887 89999999876643 57999999999999765555444555444 57889
Q ss_pred EEEeecCCCCChHHHHHHHHh
Q 030856 148 FIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 148 ~~~~S~~~~~~v~~~~~~l~~ 168 (170)
++++||++|.|++++|+.+.+
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998865
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.60 E-value=8.2e-15 Score=114.63 Aligned_cols=118 Identities=19% Similarity=0.123 Sum_probs=79.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CC-C--ccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DN-T--YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~---------------~~-~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
.+..||+++|+.++|||||+++|+.... .. + +..|............++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 3457999999999999999999975310 00 0 1112222222222335566789999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
.++.......+..+|++++|+|+.+.-..+....| .... ..+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhccc
Confidence 98888888889999999999998864222222222 2221 24578889999999853
No 283
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.60 E-value=1.3e-14 Score=98.18 Aligned_cols=155 Identities=11% Similarity=0.086 Sum_probs=88.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCcc--ceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhh----
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIP---- 76 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~---- 76 (170)
++|+++|.+|+||||++|.+++........ ...+..........++ ..+.++||||..+. .....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987653322 2222233333334555 56889999993321 11111
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCCcccC-------HHHHHHHHHhcCCe
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVS-------IEEGEAKSRELNVM 147 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 147 (170)
....+.+++++|+..... + +.....+..+...++++ ..++||.|..|......+. ....+.+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t-~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-T-EEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--S-HHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-h-HHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 224578999999998732 1 12233334444444432 3478888999876554421 12345566666667
Q ss_pred EEEeecC------CCCChHHHHHHHHh
Q 030856 148 FIETSAK------AGFNIKGCSPTIRR 168 (170)
Q Consensus 148 ~~~~S~~------~~~~v~~~~~~l~~ 168 (170)
|...+.+ ....+.+|++.+-+
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~ 183 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEE 183 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHH
Confidence 7766655 33456677666543
No 284
>PRK13768 GTPase; Provisional
Probab=99.60 E-value=1e-14 Score=100.96 Aligned_cols=112 Identities=22% Similarity=0.193 Sum_probs=69.9
Q ss_pred EEEEEecCChhhh---hhhhhhhhc---C--CcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856 59 RLQLWDTAGQERF---RSLIPSYIR---D--SSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 59 ~~~i~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~ 129 (170)
.+.+||+||..+. +..+..+++ . ++++++++|+........ ...++..+......+.|+++|+||+|....
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5899999997663 333333333 2 899999999975432222 222222222211247999999999998654
Q ss_pred cccCH--HHHH------------------------HHHHhcC--CeEEEeecCCCCChHHHHHHHHhhC
Q 030856 130 RQVSI--EEGE------------------------AKSRELN--VMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 130 ~~~~~--~~~~------------------------~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
.+... .... +..+..+ .+++++|++++.|++++.++|.+.+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 32210 0000 1122334 4889999999999999999998764
No 285
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.59 E-value=3.6e-14 Score=88.01 Aligned_cols=114 Identities=36% Similarity=0.405 Sum_probs=81.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 88 (170)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997766643332 3322 223334456778999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
|+..++++++.+ |...+....+.++|.++++||.|+.+......+... .++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999888766 777666655567899999999998544444433333 34567888888864
No 286
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.59 E-value=6.9e-14 Score=98.02 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=108.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CCccceeeeeeeEEEEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---------------------------------NTYQATIGIDFLSKTMY 52 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~ 52 (170)
....+|++-||...-||||||-+|++.... .+....+++++....+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 456799999999999999999999964220 01112233343333333
Q ss_pred eCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856 53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 53 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~ 132 (170)
-.+.+|.+-||||++.|...+..-...||+.|+++|+- ............+....+ -..+++.+||+|+.+..+.
T Consensus 83 --T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 --TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred --cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHH
Confidence 23457899999999999998888889999999999974 455555555566665553 3458888999999876554
Q ss_pred C----HHHHHHHHHhcCC---eEEEeecCCCCChH
Q 030856 133 S----IEEGEAKSRELNV---MFIETSAKAGFNIK 160 (170)
Q Consensus 133 ~----~~~~~~~~~~~~~---~~~~~S~~~~~~v~ 160 (170)
. ..+...|+.+.++ .++++||..|+|+-
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3 3445667777776 89999999999875
No 287
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.58 E-value=8e-14 Score=99.50 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=83.1
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D 125 (170)
...+.+||++|+...+..|..++.++++++||+|+++. ..+......+..+..... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46789999999999999999999999999999999863 345555555555544332 6799999999999
Q ss_pred CCCC----------------cccCHHHHHHHHHh----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 126 LVEK----------------RQVSIEEGEAKSRE----------LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 126 ~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+..+ ..-+.+.+..+... ..+....++|.+..++..+|+.+.+.
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~ 309 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDI 309 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHH
Confidence 6421 12234444444432 23566778999999999999888764
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.57 E-value=9.3e-14 Score=109.02 Aligned_cols=117 Identities=19% Similarity=0.135 Sum_probs=77.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC--C--------------CccceeeeeeeEE--EEEeCCeEEEEEEEecCCh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~--~--------------~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~ 68 (170)
.+-.+|+++|+.++|||||+++|+..... . +..+..+.+.... .+..++....+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 44578999999999999999999853211 0 0001111111111 1223445678999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
.++.......+..+|++++|+|+...-..+....| ..... .+.|.++++||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHH---cCCCeEEEEECchhh
Confidence 99988888889999999999998865332222222 22222 246778999999975
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.56 E-value=3.9e-13 Score=96.47 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=54.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhhh---
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF--- 71 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~--- 71 (170)
++|+++|.|++|||||+|++++........|..+.+.......+.+. ..++.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987754333344433333333333221 135899999994321
Q ss_pred -hh---hhhhhhcCCcEEEEEEeCC
Q 030856 72 -RS---LIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 72 -~~---~~~~~~~~~d~~i~v~d~~ 92 (170)
.. .....++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 1222367899999999984
No 290
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.56 E-value=1.2e-13 Score=99.35 Aligned_cols=113 Identities=15% Similarity=0.202 Sum_probs=81.4
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D 125 (170)
...+.+||.+|+...+..|..++.+++++|||+|+++- ..+......+..+.... -.+.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35689999999999999999999999999999999962 34555555555554432 26799999999999
Q ss_pred CCCC--------------cc-cCHHHHHHHHHh-----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 126 LVEK--------------RQ-VSIEEGEAKSRE-----------LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 126 ~~~~--------------~~-~~~~~~~~~~~~-----------~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+..+ .. .+.+.+..+... ..+..+.++|.+..++..+|+.+.+.
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~ 332 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI 332 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence 7521 00 133444443321 22466778899999999999887654
No 291
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.54 E-value=1.6e-13 Score=98.59 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=77.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCc-cce--eeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhh-----h
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I 79 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~ 79 (170)
.+++|+|+|.+|+|||||+|+|.+-...+.. .++ ...+........+.. -.+.+||.||..........| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5799999999999999999999874332211 111 111111222212211 148999999965433333333 5
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CCcccCH----HHHHHHHHh----c
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-------EKRQVSI----EEGEAKSRE----L 144 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~-------~~~~~~~----~~~~~~~~~----~ 144 (170)
...|.+|++.+ +.|.....++..-.+. .+.|+++|-||.|.. .++..+. ++.++.+.. .
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 57898888777 3455554444433333 378999999999952 1122222 233333332 2
Q ss_pred CC---eEEEeecCCCC--ChHHHHHHHHh
Q 030856 145 NV---MFIETSAKAGF--NIKGCSPTIRR 168 (170)
Q Consensus 145 ~~---~~~~~S~~~~~--~v~~~~~~l~~ 168 (170)
|+ ++|.+|+.+-. +...+.+.|.+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~ 215 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEK 215 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHH
Confidence 43 78999988655 35566666654
No 292
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.54 E-value=7.6e-14 Score=110.81 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=80.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccceeeeeeeEEEEEe--------------CC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYL--------------ED 55 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~ 55 (170)
..+-.+|+++|+.++|||||+++|+..... .+.....+++.......+ ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 445679999999999999999999864321 001111122211112222 22
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
..+.+.++||||+.+|.......+..+|+.|+|+|+.+.-.......| ..+ ...++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~---~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHH---HHCCCCEEEEEECCccc
Confidence 357889999999999999888889999999999999865433333333 222 23478999999999986
No 293
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.54 E-value=9.7e-14 Score=93.61 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=83.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC--------Cc----c----ceeeeeeeEEEEE----------------eCC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN--------TY----Q----ATIGIDFLSKTMY----------------LED 55 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~--------~~----~----~~~~~~~~~~~~~----------------~~~ 55 (170)
....|+++|+.|+|||||++++....... .. . ...+.+.....-. ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 46789999999999999999988541100 00 0 0000000000000 000
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~ 135 (170)
....+.++|+.|.-.. . ..+....+..+.++|..+.+... ... ... ...|.++++||+|+.+.......
T Consensus 101 ~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence 1234566777762100 0 01112345556677766432211 111 111 23567999999999754333334
Q ss_pred HHHHHHHhcC--CeEEEeecCCCCChHHHHHHHHhh
Q 030856 136 EGEAKSRELN--VMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 136 ~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+..+..+..+ .+++++||+++.|++++++++.++
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4444444443 799999999999999999999875
No 294
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.54 E-value=2.1e-14 Score=98.37 Aligned_cols=111 Identities=23% Similarity=0.135 Sum_probs=60.1
Q ss_pred EEEEEecCChhhhhhhhhhhh--------cCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856 59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~ 129 (170)
.+.++|||||.+....+...- ...-++++++|+..... ...+..++..+.....-+.|.+.|+||+|+..+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999998766555543 34568889999763222 222233333333333347999999999999752
Q ss_pred cc------------c-------CH---HHHHHHHHhcC-C-eEEEeecCCCCChHHHHHHHHhh
Q 030856 130 RQ------------V-------SI---EEGEAKSRELN-V-MFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 130 ~~------------~-------~~---~~~~~~~~~~~-~-~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.. . .. ++..++...++ . .++++|+.+++++++++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 10 0 00 11111122223 3 79999999999999999988664
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.53 E-value=1.9e-13 Score=97.32 Aligned_cols=102 Identities=16% Similarity=0.080 Sum_probs=64.4
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CH
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SI 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~ 134 (170)
++.+.|+||+|...-.. .....+|.++++.+...++.++.... .+. ...-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-----E~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIM-----ELADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhh-----hhhheEEeehhcccchhHHHHHH
Confidence 46789999999663222 24667999999977544444444332 111 1223788899998653321 11
Q ss_pred HHHHHHHHh-------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 135 EEGEAKSRE-------LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 135 ~~~~~~~~~-------~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+.+..... +..+++.+||.++.|++++++.|.+.
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~ 258 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDH 258 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 122222221 22589999999999999999999864
No 296
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4.8e-13 Score=99.07 Aligned_cols=156 Identities=24% Similarity=0.293 Sum_probs=104.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCC-----------------------------CCCccceeeeeeeEEEEEeCC
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-----------------------------DNTYQATIGIDFLSKTMYLED 55 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (170)
.+...++++++|...+|||||+.++++.-- ....++..++........++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 345679999999999999999999885211 011122233333333334445
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh---hhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~--~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
....+++.|+||+..|......-...+|+.++|+|++.. .+|+. ..+.+..+.+..+ -..++|++||+|+.+..
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWS 331 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCcc
Confidence 567899999999888888887778899999999999853 12321 1333344455543 45578889999998765
Q ss_pred ccCHHHHHH----HH-HhcC-----CeEEEeecCCCCChHH
Q 030856 131 QVSIEEGEA----KS-RELN-----VMFIETSAKAGFNIKG 161 (170)
Q Consensus 131 ~~~~~~~~~----~~-~~~~-----~~~~~~S~~~~~~v~~ 161 (170)
+-..++++. |. +..| +.|++||+.+|+|+-.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 544444333 33 2233 4899999999998753
No 297
>PTZ00416 elongation factor 2; Provisional
Probab=99.52 E-value=1.5e-13 Score=109.03 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=79.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccceeeeeeeEEEEEeC--------CeEEEEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLE--------DRTVRLQ 61 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 61 (170)
..+..+|+++|+.++|||||+++|+..... .+.....+++.......+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345569999999999999999999863210 0011111222111122222 2256799
Q ss_pred EEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 62 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
++||||+.++.......+..+|++|+|+|+.+.-..+...- +..+.. .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~-~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV-LRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHH-HHHHHH---cCCCEEEEEEChhhh
Confidence 99999999998888888999999999999987533332222 233322 468999999999986
No 298
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.7e-13 Score=95.09 Aligned_cols=162 Identities=19% Similarity=0.153 Sum_probs=107.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeE------------------EEEEeC------CeEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS------------------KTMYLE------DRTVR 59 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~------------------~~~~~~------~~~~~ 59 (170)
...++|.++|.-..|||||..+|.+--.. ++..+..++.... ..-.++ .-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56899999999999999999999863211 1111111110000 000011 12347
Q ss_pred EEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHHHH
Q 030856 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEG 137 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~~~ 137 (170)
+.|.|.||++-.....-+-..-.|+.++|++++.+..-...++.+-.+.-. .-..++++-||.|+....+ .+.++.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence 899999999876665555555679999999999764433444433333221 2356899999999975322 345667
Q ss_pred HHHHHhc---CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 138 EAKSREL---NVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 138 ~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
++|.+.- +.+++++||..+.|+|.++++|.+.|
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 7776643 67999999999999999999998865
No 299
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.2e-12 Score=91.76 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=99.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCCCccceeeeeeeEEEEE-------eCCeEEEEEEEecCChhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMY-------LEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~g~~~~ 71 (170)
...+++++++|.-.||||||.+++..-. .+.+..+..+.+..-..+. ..+++.++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 3456999999999999999999988532 2233333333333322222 3466788999999998755
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--cccC-HHHHHHHHHhc----
Q 030856 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVS-IEEGEAKSREL---- 144 (170)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~--~~~~-~~~~~~~~~~~---- 144 (170)
-..+.....-.|..++|+|+.....-+...- ..+.... ....++|+||.|...+ |.-. .+.+++..+..
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEc--Liig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAEC--LIIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchh--hhhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 5544444555689999999985432222211 2233333 2346777799987543 2211 22223332221
Q ss_pred ---CCeEEEeecCCC----CChHHHHHHHHhh
Q 030856 145 ---NVMFIETSAKAG----FNIKGCSPTIRRL 169 (170)
Q Consensus 145 ---~~~~~~~S~~~~----~~v~~~~~~l~~~ 169 (170)
+.|++++|+..| +.+.++.+.|..+
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 359999999999 7888888877654
No 300
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.50 E-value=1e-12 Score=89.64 Aligned_cols=140 Identities=12% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.....|+++|.+|+|||||++.+.............+. ..+ ......++.++|+||.. .. .....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 45678999999999999999999865322111111111 111 11234578899999854 22 233467899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCCCCCCcccC---HHHHHH-HHHh--cCCeEEEeecCCCCC
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVEKRQVS---IEEGEA-KSRE--LNVMFIETSAKAGFN 158 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~S~~~~~~ 158 (170)
+++|.+....... ...+..+.. .+.|. ++|+||+|+.+..... ..++++ +... .+.+++.+||+++-.
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9999875432222 222222222 24664 4599999986432211 112222 2211 235999999988743
No 301
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.49 E-value=1.6e-12 Score=90.53 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=53.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhhh----h
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF----R 72 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~ 72 (170)
|+++|.|++|||||+|++++........|..+.+.......+.+. ..++.++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999998765443444444444433333332 235899999994321 1
Q ss_pred hh---hhhhhcCCcEEEEEEeCC
Q 030856 73 SL---IPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 73 ~~---~~~~~~~~d~~i~v~d~~ 92 (170)
.+ ....++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 222356899999999874
No 302
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.48 E-value=3.7e-14 Score=92.00 Aligned_cols=53 Identities=28% Similarity=0.217 Sum_probs=46.0
Q ss_pred EEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeecCCCCChHHHHHHHHhh
Q 030856 117 IVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 117 ~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
-++|+||.|+...-..+.+...+-+++.+ .+++++|+++|+|++++++|+...
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 48889999998887777788888888765 699999999999999999998764
No 303
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=6.3e-12 Score=84.74 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=104.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhhhhhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR 80 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 80 (170)
..-+|+++|.|.+|||||+..+.............+.+..+..+.+++ ..+++.|.||.-+- ........+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 356899999999999999999998766544344444566666666655 45889999994321 112333467
Q ss_pred CCcEEEEEEeCCChhhHH-hHHHHHHHHHHhcC---C-------------------------------------------
Q 030856 81 DSSVAVVVYDVASRQSFL-NTSKWIDEVRTERG---S------------------------------------------- 113 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~---~------------------------------------------- 113 (170)
.+|.+++|.|++..+.-. -+...+..+.-... |
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 899999999998754433 23344444321111 1
Q ss_pred -------------------CCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 114 -------------------DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 114 -------------------~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
=++++.|.||+| +++.++..++++..+-.++ |+.-..|++.+++.+.+.+
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~PnsvVi--SC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNSVVI--SCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCcEEE--EeccccCHHHHHHHHHHHh
Confidence 136777888888 4678888888888776555 5566688999999887653
No 304
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.45 E-value=3.9e-12 Score=89.17 Aligned_cols=138 Identities=14% Similarity=0.215 Sum_probs=75.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----- 73 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----- 73 (170)
+++|+++|.+|+|||||+|.|++...... ..++...........-++..+.+.++||||..+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999998654322 112233333334445567788999999999321100
Q ss_pred -hh--------hhh-------------hcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 74 -LI--------PSY-------------IRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 74 -~~--------~~~-------------~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
.. ..+ =.+.|+++|.++.+.. ++..+ ...+..+ ...++++-|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~L----s~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRL----SKRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHH----TTTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHh----cccccEEeEEecccccCHH
Confidence 00 001 1146899999998742 12111 1222333 3568899999999986543
Q ss_pred ccC--HHHHHHHHHhcCCeEEEe
Q 030856 131 QVS--IEEGEAKSRELNVMFIET 151 (170)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~ 151 (170)
+.. ........+.+++.++..
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S---
T ss_pred HHHHHHHHHHHHHHHcCceeecc
Confidence 321 233444455667755543
No 305
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.5e-12 Score=98.93 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=103.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceee----eeeeEEEE--------EeCC----eEEEEEEEecCChh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG----IDFLSKTM--------YLED----RTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~----~~~~~~~~--------~~~~----~~~~~~i~D~~g~~ 69 (170)
..+..-|+|+|...+|||-|+..+.+.+.......+.+ .++.+... .-.+ ..--+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 44567789999999999999999998766533333322 22222110 0000 11137899999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc---------------
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--------------- 131 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--------------- 131 (170)
.|..+.......||+.|+|+|+.+. .+++.+ ..++. .+.|++|.+||+|..=...
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 9999999999999999999999853 333332 22332 5799999999999741100
Q ss_pred --cCH-------HHHHHHHHh-c-------------CCeEEEeecCCCCChHHHHHHHHhh
Q 030856 132 --VSI-------EEGEAKSRE-L-------------NVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 132 --~~~-------~~~~~~~~~-~-------------~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+.. .-..+|+.+ + -+.++++||.+|+||.+|+-+|++.
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 000 001111110 0 1367999999999999999998863
No 306
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.42 E-value=1.6e-11 Score=88.78 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=93.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC----CCC-------------CCcc----ceeeeee---eEEEEE-eCCeEEEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD----KFD-------------NTYQ----ATIGIDF---LSKTMY-LEDRTVRLQ 61 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~----~~~-------------~~~~----~~~~~~~---~~~~~~-~~~~~~~~~ 61 (170)
.-.+.|+++|+.++|||||+|++.++ ... .+.. -|+...+ ....+. .++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34689999999999999999999987 332 1111 1122222 112222 234567899
Q ss_pred EEecCChhhhh-------hh----------------------hhhhhc-CCcEEEEEE-eCC--C--hhh-HHhHHHHHH
Q 030856 62 LWDTAGQERFR-------SL----------------------IPSYIR-DSSVAVVVY-DVA--S--RQS-FLNTSKWID 105 (170)
Q Consensus 62 i~D~~g~~~~~-------~~----------------------~~~~~~-~~d~~i~v~-d~~--~--~~~-~~~~~~~~~ 105 (170)
++||+|...-. .. .+..+. ++|+.|+|. |.+ + ++. .+.-..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999932110 00 222344 889888888 653 1 122 233355555
Q ss_pred HHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC--CChHHHHHHH
Q 030856 106 EVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG--FNIKGCSPTI 166 (170)
Q Consensus 106 ~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~v~~~~~~l 166 (170)
.+.. .++|+++++||.|-... ...+...++...++++++.+|+.+- +.+..+++.+
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 5554 47999999999994221 2344556677788998888887643 3455555443
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.42 E-value=4.7e-12 Score=89.94 Aligned_cols=102 Identities=19% Similarity=0.051 Sum_probs=62.8
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-- 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~-- 134 (170)
++.+.|+||+|.... .......+|.++++-.... -+.+......+ .+.|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 467899999995422 2234667888888854332 23333332222 2467799999999865432111
Q ss_pred H----HHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 135 E----EGEAKSRE---LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 135 ~----~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
. ....+... .+.+++++||+++.|+++++++|.+.
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 0 00111111 22469999999999999999999764
No 308
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.40 E-value=2.1e-11 Score=92.70 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=74.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-------h---hhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------S---LIP 76 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~---~~~ 76 (170)
..++|+++|.+|+||||++|.+++..... ......+..........++ ..+.++||||..+.. . ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 45799999999999999999999976432 2111122222222223333 568999999955421 1 122
Q ss_pred hhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCC
Q 030856 77 SYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVE 128 (170)
Q Consensus 77 ~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~vvv~nK~D~~~ 128 (170)
.++. ..|++|+|..+........-..++..+...++++ ..++||.|+.|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 5899999988764322222345666666666644 34788889999865
No 309
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.39 E-value=3.6e-12 Score=83.21 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=41.8
Q ss_pred EEEEEecCChhh----hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030856 59 RLQLWDTAGQER----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124 (170)
Q Consensus 59 ~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~ 124 (170)
.+.|+||||... .......+++.+|++|+|.++++..+-.....+.+.... ....+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC---CCCeEEEEEcCC
Confidence 489999999542 346788889999999999999875443333333333322 234488888984
No 310
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.1e-11 Score=95.89 Aligned_cols=120 Identities=22% Similarity=0.204 Sum_probs=88.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----C------------CccceeeeeeeEEEEEeCCe-EEEEEEEecCCh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----N------------TYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQ 68 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~ 68 (170)
..+-.+|+|+|+-.+|||||..+++...-. . ......+++......+.... .+++.++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 567789999999999999999998852110 0 01122344444444444444 489999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~ 129 (170)
-+|.......++-+|+.++|+|+...-..+...-|.+. ...++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa----~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA----DKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH----hhcCCCeEEEEECcccccc
Confidence 99999999999999999999999876444554555333 3357999999999998643
No 311
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.37 E-value=8.7e-12 Score=86.07 Aligned_cols=102 Identities=18% Similarity=0.072 Sum_probs=66.5
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-- 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~-- 134 (170)
++.+.|++|.|-... .......+|.++++.-..-.+..+.++.-+-++. -++|+||.|.......-.
T Consensus 143 G~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~l 211 (323)
T COG1703 143 GYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAAREL 211 (323)
T ss_pred CCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHHH
Confidence 467899999985422 2333456899999888776666777665444433 378889999644321111
Q ss_pred HHHHHHH----HhcC--CeEEEeecCCCCChHHHHHHHHhh
Q 030856 135 EEGEAKS----RELN--VMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 135 ~~~~~~~----~~~~--~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
..+..+. +..+ .+++.+||.+|+|++++++.+.+.
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 1111122 1123 389999999999999999998763
No 312
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.36 E-value=1.2e-12 Score=89.00 Aligned_cols=151 Identities=17% Similarity=0.085 Sum_probs=85.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC-----------CCCccce---------------eeeeeeEEEEEeC------
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-----------DNTYQAT---------------IGIDFLSKTMYLE------ 54 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~------ 54 (170)
.+...|+|.|+||+|||||+++|..... +++...+ .....+.......
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3568999999999999999998874211 0000000 0011111111111
Q ss_pred ------------CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEe
Q 030856 55 ------------DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGN 122 (170)
Q Consensus 55 ------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~n 122 (170)
..++.+.|++|.|-..- ......-+|.+++|....-.+..+.++.-+-++ .-++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence 12356889999884321 233356799999999988776666665544444 2378889
Q ss_pred CCCCCCCcccCH--HHHHHHHHh----cCCeEEEeecCCCCChHHHHHHHHh
Q 030856 123 KTDLVEKRQVSI--EEGEAKSRE----LNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 123 K~D~~~~~~~~~--~~~~~~~~~----~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
|.|+......-. ..+..+... +..+++.+||.++.|++++++.|.+
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 999644332211 112222221 1249999999999999999999875
No 313
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.35 E-value=2.7e-11 Score=86.17 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=77.9
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhh----------HHhHHHHHHHHHHhcC-CCCeEEEEEeCCCC
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS----------FLNTSKWIDEVRTERG-SDVIIVLVGNKTDL 126 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~ 126 (170)
..+.++|.+|+...+..|.+++.+++++|||.++++-+. +..-...+..+..... .+.++++++||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 678999999999999999999999999999999985322 1122333333433322 67899999999998
Q ss_pred CCC--------------cc-cCHHHHHHHHHh----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 127 VEK--------------RQ-VSIEEGEAKSRE----------LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 127 ~~~--------------~~-~~~~~~~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.++ .. -..+++..+... ..+.+..+.|.+..+|+.+|.++.+.
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~ 342 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT 342 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence 642 11 233444444332 13455667888889999999887654
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.35 E-value=1e-12 Score=91.55 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=40.5
Q ss_pred CeEEEEEeCCCCCCCcccCHHHHHHHHHhc--CCeEEEeecCCCCChHHHHHHHHhh
Q 030856 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 115 ~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+-++|+||+|+........+...+..+.. +.+++++|+++|+|++++.+||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456888899999653333344444444443 4699999999999999999999763
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.35 E-value=5.1e-11 Score=81.49 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=42.4
Q ss_pred EEEEEEecCChhh-------------hhhhhhhhhcC-CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030856 58 VRLQLWDTAGQER-------------FRSLIPSYIRD-SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (170)
Q Consensus 58 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK 123 (170)
..+.++|+||... ...+...|+++ .+++++|+|+...-.-.........+. ..+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 3689999999531 23356667774 569999998764211111112222222 246899999999
Q ss_pred CCCCC
Q 030856 124 TDLVE 128 (170)
Q Consensus 124 ~D~~~ 128 (170)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99864
No 316
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.3e-11 Score=87.75 Aligned_cols=139 Identities=20% Similarity=0.233 Sum_probs=95.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc--CC----------CCC--------CccceeeeeeeEEEEEeCCeEEEEEEEec
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMY--DK----------FDN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~--~~----------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (170)
-.++.+.+|+-.|.+|||||-.+|+- +. ... +.....++.+.....+.+.....+.+.||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 35678999999999999999999772 10 000 01123455556666666666788999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC
Q 030856 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN 145 (170)
Q Consensus 66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~ 145 (170)
||++++..-...-+-.+|..++|+|+...-.-+. .+.+...+. .++|++-++||.|...... .+...+.....+
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl---R~iPI~TFiNKlDR~~rdP--~ELLdEiE~~L~ 162 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL---RDIPIFTFINKLDREGRDP--LELLDEIEEELG 162 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh---cCCceEEEeeccccccCCh--HHHHHHHHHHhC
Confidence 9999999988888999999999999985422222 222222222 5899999999999854333 355555555555
Q ss_pred CeEEE
Q 030856 146 VMFIE 150 (170)
Q Consensus 146 ~~~~~ 150 (170)
+..++
T Consensus 163 i~~~P 167 (528)
T COG4108 163 IQCAP 167 (528)
T ss_pred cceec
Confidence 54443
No 317
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.33 E-value=3.7e-12 Score=88.61 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=93.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh---------hhhhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIP 76 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~ 76 (170)
..+..-|+++|..|+|||||+++|.+........-..+.+........++.. .+.+.||.|.-. |+. .-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A-TL 252 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA-TL 252 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH-HH
Confidence 3455679999999999999999999655443322222233333333333333 577889999332 222 22
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe----EEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEee
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI----IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 152 (170)
.....+|.++-|.|+++|+.-+.....+..+....-+..| ++=|-||.|..+.. .-...++ .+.+|
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~--------~e~E~n~--~v~is 322 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE--------VEEEKNL--DVGIS 322 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc--------CccccCC--ccccc
Confidence 2356899999999999986555444444444433212233 45566777753321 1122333 57789
Q ss_pred cCCCCChHHHHHHHHh
Q 030856 153 AKAGFNIKGCSPTIRR 168 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~ 168 (170)
|.+|+|++++.+.+-.
T Consensus 323 altgdgl~el~~a~~~ 338 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEET 338 (410)
T ss_pred cccCccHHHHHHHHHH
Confidence 9999999999988754
No 318
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4e-11 Score=86.65 Aligned_cols=153 Identities=20% Similarity=0.129 Sum_probs=102.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
.|+..|.--.|||||++.+.+..-. +.-....+.+........++ ..+.|+|.||++++-...-..+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 5788899999999999999986443 33344445555444443333 378999999999988888888889999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH---hcCCeEEEeecCCCCChHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR---ELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
|++.++.-..+. .+. ..+....+ ....++|+||+|+.+...+. +..++... ..+.+++.+|+.+|+|++++.+
T Consensus 80 vV~~deGl~~qt-gEh-L~iLdllg-i~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQT-GEH-LLILDLLG-IKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhh-HHH-HHHHHhcC-CCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999964322221 111 22223222 23358888999987543221 11222222 2345889999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
.|.+.
T Consensus 156 ~l~~L 160 (447)
T COG3276 156 ELIDL 160 (447)
T ss_pred HHHHh
Confidence 99864
No 319
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.32 E-value=1.1e-10 Score=79.73 Aligned_cols=109 Identities=18% Similarity=0.171 Sum_probs=63.3
Q ss_pred EEEEEEecCChhhhhh------hhhhhhc--CCcEEEEEEeCC---ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856 58 VRLQLWDTAGQERFRS------LIPSYIR--DSSVAVVVYDVA---SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~ 126 (170)
....++||||+-+... .+...+. ..-++++++|.. +|.+|-.-.- -...-....++|.+++.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl--YAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML--YACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHH--HHHHHHHhccCCeEEEEecccc
Confidence 4688999999654211 1111122 345777888864 3444433222 2222223357999999999998
Q ss_pred CCCcc----c-CHHHHHHHHH---------------------hcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 127 VEKRQ----V-SIEEGEAKSR---------------------ELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 127 ~~~~~----~-~~~~~~~~~~---------------------~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
.+..- . +.+..++-.. -.++..+-||+.+|.|.+++|..+-+
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~ 261 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDE 261 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHH
Confidence 64310 0 0111111111 01567899999999999999998765
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.2e-10 Score=83.01 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=54.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe------------C----CeEEEEEEEecCChh---
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL------------E----DRTVRLQLWDTAGQE--- 69 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~~i~D~~g~~--- 69 (170)
.++++|+|.|++|||||+|+++.........|..+++.-.....+ . -....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987765333343333322221111 1 123578999999822
Q ss_pred ----hhhhhhhhhhcCCcEEEEEEeCC
Q 030856 70 ----RFRSLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 70 ----~~~~~~~~~~~~~d~~i~v~d~~ 92 (170)
.....--.-++.+|+++-|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 12222333367899999999987
No 321
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=7.7e-12 Score=83.17 Aligned_cols=147 Identities=24% Similarity=0.334 Sum_probs=89.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----hhhhhhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRD 81 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~ 81 (170)
.+-||+++|.+|+|||++=-.++..... +...++.++++.-.....-| ...+.+||.+|++.+.. .....+++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3568999999999999986655543321 22223333333322221211 25689999999885432 34456889
Q ss_pred CcEEEEEEeCCChhhHHhH---HHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--ccCH----HHHHHHHHhcCCeEEEee
Q 030856 82 SSVAVVVYDVASRQSFLNT---SKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSI----EEGEAKSRELNVMFIETS 152 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~~~----~~~~~~~~~~~~~~~~~S 152 (170)
.++++++||++..+--.++ +..++.+.++. |...+.+..+|+|+.... +... +..+.+.+..++.++++|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999876443333 44444454443 677888889999987543 2222 223333333456778877
Q ss_pred cCCC
Q 030856 153 AKAG 156 (170)
Q Consensus 153 ~~~~ 156 (170)
..+.
T Consensus 161 iwDe 164 (295)
T KOG3886|consen 161 IWDE 164 (295)
T ss_pred hhhH
Confidence 6654
No 322
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3e-11 Score=91.17 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=84.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc-----------------eeeeeeeEEEEE---eCCeEEEEEEEec
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------TIGIDFLSKTMY---LEDRTVRLQLWDT 65 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~ 65 (170)
+....+|+++|+-++|||+|+.-|..+..+.-..+ ..++.....+.. .+++.+-+.+.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 45568999999999999999999987655422111 111222222222 2456788999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
||+..+.......+..+|++++++|+.+.-.+..-+. ++.......|+++|+||.|+.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~----ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI----IKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH----HHHHHhccCcEEEEEehhHHH
Confidence 9999999999999999999999999987655544322 222223579999999999963
No 323
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.30 E-value=9.6e-11 Score=83.01 Aligned_cols=138 Identities=14% Similarity=0.233 Sum_probs=88.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh------
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------ 71 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------ 71 (170)
..++|+++|+.|+|||||+|.|++...... ..++.........+.-++....+.++||||..+.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999998744322 2344445555555666677889999999993321
Q ss_pred --------hhhhhhhhc--------------CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 72 --------RSLIPSYIR--------------DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 72 --------~~~~~~~~~--------------~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
.+....|+. +.++++|.+..+.. ++..+ ...+..+. ..+.++-|+.|+|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccCC
Confidence 111111111 46899999987642 23332 22223332 4577888889999875
Q ss_pred Cccc--CHHHHHHHHHhcCCeEEE
Q 030856 129 KRQV--SIEEGEAKSRELNVMFIE 150 (170)
Q Consensus 129 ~~~~--~~~~~~~~~~~~~~~~~~ 150 (170)
..+. -.+...+....+++++|.
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC
Confidence 4433 234455556667777663
No 324
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=7.6e-11 Score=79.15 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=99.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh---hhhhhcCCcEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSSVA 85 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~ 85 (170)
+.+|+++|...+||||+-+..+++-.|.++...... .......+.+.-+.+.+||.||+..+... ....++++.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflEST-ski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLEST-SKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeecc-CcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 356999999999999998887777655443221111 11111122234467999999998765442 45568899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCC-------cccCHHHHHHHHH----hcCCeEEEee
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSR----ELNVMFIETS 152 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvv~nK~D~~~~-------~~~~~~~~~~~~~----~~~~~~~~~S 152 (170)
+||+|+.+ +-++.+......+.+.. .+++.+-+++.|.|-..+ +.+.......++. ...+.|+.+|
T Consensus 106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99999875 33444454444444433 378889999999995422 2222222222222 2234677777
Q ss_pred cCCCCChHHHHHHHHhhC
Q 030856 153 AKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~~i 170 (170)
..+. ++-|.|..+++.+
T Consensus 185 IyDH-SIfEAFSkvVQkL 201 (347)
T KOG3887|consen 185 IYDH-SIFEAFSKVVQKL 201 (347)
T ss_pred ecch-HHHHHHHHHHHHH
Confidence 6654 7888888887653
No 325
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.25 E-value=2.2e-11 Score=89.96 Aligned_cols=157 Identities=20% Similarity=0.350 Sum_probs=118.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+++|++|+|..++|||+|+.+++.+.+.....+.-+ .+.+.+..++....+.+.|.+|.. ...|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 45689999999999999999999998888655444333 334445567777788888988833 45667789999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCcccCHHHHHHHHH-hcCCeEEEeecCCCCChHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~--~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~~ 161 (170)
||+|...+..+|+.+......+..+.. ..+|+++++++--.. ..+.+...+++.++. ...+.+|++.+.+|.+++.
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 999999999999998887777654443 568888888765332 234444555555554 4567999999999999999
Q ss_pred HHHHHHhh
Q 030856 162 CSPTIRRL 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
.|+.+..+
T Consensus 180 vf~~~~~k 187 (749)
T KOG0705|consen 180 VFQEVAQK 187 (749)
T ss_pred HHHHHHHH
Confidence 99988764
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.24 E-value=9.3e-11 Score=78.15 Aligned_cols=92 Identities=26% Similarity=0.326 Sum_probs=64.4
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcC
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELN 145 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 145 (170)
+..+...+++++|++++|+|++++..- |...+... ..+.|+++|+||+|+..... ..+....+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 577888899999999999999875321 11122111 24689999999999865332 233333333 2333
Q ss_pred C---eEEEeecCCCCChHHHHHHHHhh
Q 030856 146 V---MFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 146 ~---~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
. .++++||++++|+++++++|.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~ 123 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKL 123 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 3 68999999999999999999864
No 327
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=2.5e-10 Score=76.61 Aligned_cols=145 Identities=13% Similarity=0.186 Sum_probs=88.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC---------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------- 71 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------- 71 (170)
-.++|+++|.+|.|||||+|.++...... .+..|.........+.-++...++.++||||..++
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 36899999999999999999998654422 12233444444444555677789999999993321
Q ss_pred -------hhhhhhh------------hc--CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC-
Q 030856 72 -------RSLIPSY------------IR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE- 128 (170)
Q Consensus 72 -------~~~~~~~------------~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~- 128 (170)
......| +. +++.++|.+..+. .++.-+ .++++.+. .-+.++-|+-|.|...
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt----~vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT----EVVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh----hhheeeeeEeecccccH
Confidence 1111122 22 4578888887764 233333 22223332 3467888889999643
Q ss_pred -CcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856 129 -KRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (170)
++..-.+..++-...+++.+|+--+.+.+
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 33333455555566778877776655544
No 328
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.5e-10 Score=78.77 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=99.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC----------------CCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYD----------------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.+||..+|.-..|||||-.++..- ..+.+....++++. ....++-....+...|+||+.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITInt--ahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINT--AHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceecc--ceeEEecCCceEEeccCCChH
Confidence 457899999999999999998887631 11222223333333 333333333456778999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCcccC---HHHHHHHHHhcC
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELN 145 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~ 145 (170)
+|-.....-....|+.|+|+++++...-+. +..+...++ -++| +++++||+|+.+..+.. ..+.+++...++
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 998877777788999999999987432222 222222222 2454 78889999998644332 345666777776
Q ss_pred C-----eEEEeecCCCC--------ChHHHHHHHHhh
Q 030856 146 V-----MFIETSAKAGF--------NIKGCSPTIRRL 169 (170)
Q Consensus 146 ~-----~~~~~S~~~~~--------~v~~~~~~l~~~ 169 (170)
+ |++.-|+..-- .+.+|++++..+
T Consensus 163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~y 199 (394)
T COG0050 163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSY 199 (394)
T ss_pred CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhc
Confidence 5 66766655321 245666655443
No 329
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.9e-10 Score=79.95 Aligned_cols=141 Identities=15% Similarity=0.270 Sum_probs=86.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCC---------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--------
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------- 71 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------- 71 (170)
.++++++|..|.|||||+|.|+......+ ...+.........+.-++..+++++.||||..+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999998744322 1223344444444555677889999999993321
Q ss_pred ------hhhhhhh-----------hc--CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 72 ------RSLIPSY-----------IR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 72 ------~~~~~~~-----------~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
.+....| +. +.++++|.+..+.. ++..+ ...+..+ ...++++-|+.|.|.....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l----~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL----SKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH----hccccccceeeccccCCHHH
Confidence 1111112 22 57899999987642 22222 1222222 24688888899999865443
Q ss_pred cC--HHHHHHHHHhcCCeEEEeecC
Q 030856 132 VS--IEEGEAKSRELNVMFIETSAK 154 (170)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~~S~~ 154 (170)
+. .....+.+..+++++|....-
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCC
Confidence 32 344455555666665554433
No 330
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.20 E-value=1.2e-10 Score=75.21 Aligned_cols=93 Identities=25% Similarity=0.251 Sum_probs=63.4
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEE
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
++.+.++.+.++|++++|+|++++...... .+...+. ..+.|+++|+||+|+.+.... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 345677788889999999999876432221 1211121 236899999999998532211 1111233445678999
Q ss_pred eecCCCCChHHHHHHHHhh
Q 030856 151 TSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~ 169 (170)
+||+++.|++++++.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~ 94 (156)
T cd01859 76 VSAKERLGTKILRRTIKEL 94 (156)
T ss_pred EEccccccHHHHHHHHHHH
Confidence 9999999999999998764
No 331
>PRK12289 GTPase RsgA; Reviewed
Probab=99.18 E-value=1.4e-10 Score=83.69 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=67.1
Q ss_pred hhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEe
Q 030856 73 SLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET 151 (170)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
.+.+..+.++|.+++|+|+.++. ....+..|+.... ..++|+++|+||+|+....+. +.........++.++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 44555688999999999998775 3445566665542 257999999999998643221 22223334668899999
Q ss_pred ecCCCCChHHHHHHHHhh
Q 030856 152 SAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 152 S~~~~~~v~~~~~~l~~~ 169 (170)
|+.++.|++++++.|...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999988653
No 332
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.11 E-value=6.2e-10 Score=78.65 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=67.7
Q ss_pred hhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC
Q 030856 76 PSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154 (170)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 154 (170)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..+ ...........+.+++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 44578999999999999887 77888888776654 3689999999999865421 122233344567899999999
Q ss_pred CCCChHHHHHHHHh
Q 030856 155 AGFNIKGCSPTIRR 168 (170)
Q Consensus 155 ~~~~v~~~~~~l~~ 168 (170)
++.|+++++.+|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999988764
No 333
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.11 E-value=2e-10 Score=78.50 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=92.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc-eeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhhhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL 74 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 74 (170)
...+.++++.|..++|||+|+|-+...+....... ..+.......+.+ .-.+.+.|.|| ..++...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHh
Confidence 45679999999999999999999998765433222 3332222222222 23678889999 2344556
Q ss_pred hhhhhcCCc---EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------ccc-----CHHHHHHH
Q 030856 75 IPSYIRDSS---VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK------RQV-----SIEEGEAK 140 (170)
Q Consensus 75 ~~~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------~~~-----~~~~~~~~ 140 (170)
...|+.+-+ -+.+++|++-+ ++............ .++|+.+|.||+|.... +.. .....-+.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 666665543 23444555432 22222111111221 47999999999997521 111 11222222
Q ss_pred HHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 141 SRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 141 ~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
+.....+++.+|+.++.|+++++-.+.+
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhh
Confidence 2333458888999999999998876654
No 334
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.3e-09 Score=80.26 Aligned_cols=140 Identities=11% Similarity=0.172 Sum_probs=85.2
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
....+++-++++||||+|||||++.|........ .. +.......+.++..++++.++|. +..+++ ...+-+|
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~-~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaD 135 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----ID-EIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIAD 135 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhh----hh-ccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhh
Confidence 3456778899999999999999999886432111 11 11111122456778999999993 333333 3456799
Q ss_pred EEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCe-EEEEEeCCCCCCCcccCHHHHHHHHHh------cCCeEEEeecCC
Q 030856 84 VAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRE------LNVMFIETSAKA 155 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~ 155 (170)
.+++++|.+- .|+.-. .++..+..+ +.| ++-|+|+.|+..........-+++-++ .|+.+|.+|...
T Consensus 136 LVlLlIdgnf--GfEMETmEFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 136 LVLLLIDGNF--GFEMETMEFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eeEEEecccc--CceehHHHHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9999999773 344433 333333333 455 667789999976443322222222222 267888888664
Q ss_pred C
Q 030856 156 G 156 (170)
Q Consensus 156 ~ 156 (170)
+
T Consensus 211 n 211 (1077)
T COG5192 211 N 211 (1077)
T ss_pred c
Confidence 4
No 335
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.09 E-value=1.5e-09 Score=79.99 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=78.7
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D 125 (170)
...+.++|++|+...+..|..++.+++++|||+++++- ..+.+....+..+... .-.+.|++|+.||.|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 35789999999999999999999999999999998732 1233333333443332 225899999999999
Q ss_pred CCCC-----------------c-ccCHHHHHHHHHh------------cCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 126 LVEK-----------------R-QVSIEEGEAKSRE------------LNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 126 ~~~~-----------------~-~~~~~~~~~~~~~------------~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
+..+ . .-+.+.+..+... ..+.+..++|.+..++..+|+.+.+.|
T Consensus 315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 7421 0 1234555555432 223567899999999999999987653
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=99.09 E-value=1.5e-09 Score=78.44 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=66.8
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHHhcCCeEEEeecCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (170)
..++|.+++|++.....++..+..|+..... .++|+++|+||+|+...... ............+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4579999999998877788899998765432 46899999999999653321 1122233345667899999999999
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|+++++++|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999998754
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=99.08 E-value=6.9e-10 Score=78.83 Aligned_cols=87 Identities=20% Similarity=0.231 Sum_probs=64.7
Q ss_pred hhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC
Q 030856 78 YIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (170)
.+.++|.+++|+|+.+++.... +..|+..+.. .++|+++|+||+|+.+... .........+..+.+++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3589999999999988765444 4666655543 4789999999999863322 122334445567889999999999
Q ss_pred CChHHHHHHHHh
Q 030856 157 FNIKGCSPTIRR 168 (170)
Q Consensus 157 ~~v~~~~~~l~~ 168 (170)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999988753
No 338
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.3e-09 Score=77.54 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=78.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ceeeeeeeEEEEE------eCCe-----------------------
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMY------LEDR----------------------- 56 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~-~~~~~~~~~~~~~------~~~~----------------------- 56 (170)
..+.-|+++|+=..||||+++.|+.+.++.... |..+.+.....+. ++|.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 456779999999999999999999998874322 2222222222211 1111
Q ss_pred ----------EEEEEEEecCChh-----------hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC
Q 030856 57 ----------TVRLQLWDTAGQE-----------RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV 115 (170)
Q Consensus 57 ----------~~~~~i~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (170)
--.+.|+||||.- .+....+.+..++|.|+++||...-+--++....+..++. ..-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Ccc
Confidence 0158999999922 2455677788999999999997654333344444444443 345
Q ss_pred eEEEEEeCCCCCCCcc
Q 030856 116 IIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 116 ~~vvv~nK~D~~~~~~ 131 (170)
.+-||.||.|+.+.++
T Consensus 213 kiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQ 228 (532)
T ss_pred eeEEEeccccccCHHH
Confidence 5677779999765433
No 339
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.07 E-value=1.3e-09 Score=79.32 Aligned_cols=94 Identities=28% Similarity=0.373 Sum_probs=68.9
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH----HHHHh
Q 030856 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSRE 143 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~----~~~~~ 143 (170)
.+++..+...+.+.++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+... ....+... +.++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4577888888889999999999987643 22333444433 26789999999998653 33334443 34566
Q ss_pred cCC---eEEEeecCCCCChHHHHHHHHh
Q 030856 144 LNV---MFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 144 ~~~---~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
.++ .++.+||+++.|++++++.|.+
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 676 4899999999999999999865
No 340
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.03 E-value=1.6e-09 Score=73.59 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=57.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-------hhhhhhhhhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD 81 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 81 (170)
-+|.++|.|.+|||||+..+.+...+ ..+..+.- ...+....+ ...++++.|.||.-+ .........+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl-~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTL-TTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeE-EEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 48999999999999999999987665 33333322 222222222 345789999999332 11223334668
Q ss_pred CcEEEEEEeCCChhhHHh
Q 030856 82 SSVAVVVYDVASRQSFLN 99 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~ 99 (170)
|+.+++|.|+..|-+-..
T Consensus 137 cnli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKK 154 (358)
T ss_pred ccEEEEEeeccCcccHHH
Confidence 999999999987755443
No 341
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.01 E-value=1e-09 Score=69.69 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=36.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
+++++|.+|+|||||+|++.+..... ...+..+.+ ......++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH--FQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc--eEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876532 122222222 22333333 4799999995
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.98 E-value=2.3e-09 Score=69.33 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=36.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
+.++|+++|.+|+|||||+|++.+.... ....+..+.... .+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEcCC---CEEEEECcC
Confidence 5688999999999999999999986543 222233222221 222221 367999998
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.98 E-value=3.2e-09 Score=68.65 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=57.0
Q ss_pred hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (170)
.+..+|++++|.|+.++..-. .......+.. ...+.|+++|+||+|+.++... ......+...+....+++|++.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 367899999999998863211 1222222222 2346899999999998643221 122233333333345889999999
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|++++++.+.+.
T Consensus 82 ~~~~L~~~l~~~ 93 (157)
T cd01858 82 GKGSLIQLLRQF 93 (157)
T ss_pred cHHHHHHHHHHH
Confidence 999999998653
No 344
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.96 E-value=3.2e-09 Score=75.88 Aligned_cols=158 Identities=17% Similarity=0.176 Sum_probs=94.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccce--------------eeeeeeEEEEEeCC----------------
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT--------------IGIDFLSKTMYLED---------------- 55 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---------------- 55 (170)
...++.++..|.-..|||||.-.|..+..++....+ .+.+.....+-+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 456799999999999999999988866554221111 11111111111111
Q ss_pred -----eEEEEEEEecCChhhhhhhhh-h-hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 56 -----RTVRLQLWDTAGQERFRSLIP-S-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 56 -----~~~~~~i~D~~g~~~~~~~~~-~-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
..--+.+.|+.|++.|..... . .-+..|..++++.+++.-+ ...+...-+.. .-+.|+++++||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~--a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIAL--AMELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhh--hhcCCEEEEEEecccCc
Confidence 112478999999998755333 2 2346899999999886532 22222122222 24799999999999864
Q ss_pred CcccC--HHHHHH----------------------HHH--hcCC-eEEEeecCCCCChHHHHHHHH
Q 030856 129 KRQVS--IEEGEA----------------------KSR--ELNV-MFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 129 ~~~~~--~~~~~~----------------------~~~--~~~~-~~~~~S~~~~~~v~~~~~~l~ 167 (170)
..... .++..+ .+. ..++ |++.+|+.+|+|++-+.+.+.
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 32110 111111 111 1223 999999999999887665544
No 345
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.96 E-value=2e-09 Score=70.40 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=38.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
..++++++|.||+|||||+|++.+.... ....|..+....... .+ ..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~~---~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--LD---KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--eC---CCEEEEECcC
Confidence 3489999999999999999999986552 333344433333222 22 2578999998
No 346
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.95 E-value=3.2e-09 Score=74.62 Aligned_cols=86 Identities=20% Similarity=0.172 Sum_probs=62.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC---------------eEEEEEEEecCChhh-
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---------------RTVRLQLWDTAGQER- 70 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~- 70 (170)
.++++++|||.|+||||||+|.+..........|..+++.....+.+.. ....++++|++|.-.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4678999999999999999999999887766667666666655554432 134689999998321
Q ss_pred ------hhhhhhhhhcCCcEEEEEEeCC
Q 030856 71 ------FRSLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 71 ------~~~~~~~~~~~~d~~i~v~d~~ 92 (170)
....--.-++++|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 2222333466899999988865
No 347
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=6.7e-09 Score=74.17 Aligned_cols=159 Identities=14% Similarity=0.237 Sum_probs=95.6
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc-----------------------eeeeeeeEEEEEeC------
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------------TIGIDFLSKTMYLE------ 54 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~------ 54 (170)
.+.--.++++++|...+|||||+--|..+..++.... ..+++.....+.+.
T Consensus 162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE 241 (591)
T KOG1143|consen 162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE 241 (591)
T ss_pred cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence 3445579999999999999999998887655432111 11222222222111
Q ss_pred ----CeEEEEEEEecCChhhhhhhhhhhhcC--CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 55 ----DRTVRLQLWDTAGQERFRSLIPSYIRD--SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 55 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
...--++++|.+|+..|......-+.+ .|..++++++.....+.. ++.+- +... .++|++++++|+|+..
T Consensus 242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLg-l~~A--L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLG-LIAA--LNIPFFVLVTKMDLVD 317 (591)
T ss_pred HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHH-HHHH--hCCCeEEEEEeecccc
Confidence 112358999999999887755544433 577788888765433222 22222 2222 4799999999999875
Q ss_pred Ccc------------------------cCHHHHHHHHH----hcCCeEEEeecCCCCChHHHHHHH
Q 030856 129 KRQ------------------------VSIEEGEAKSR----ELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 129 ~~~------------------------~~~~~~~~~~~----~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
... .+.+++-.-+. ..=.|++.+|+.+|+|++-+...|
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 311 11222222222 222389999999999987655443
No 348
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.7e-08 Score=74.48 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=85.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-Cccceeee-------------------------------------ee--
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGI-------------------------------------DF-- 46 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~-------------------------------------~~-- 46 (170)
....||+|.|..++||||++|+++.++.-+ ...+++.+ +.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 457899999999999999999998654421 11111000 00
Q ss_pred ---eEEEEEeCCeE-----EEEEEEecCChh---hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC
Q 030856 47 ---LSKTMYLEDRT-----VRLQLWDTAGQE---RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV 115 (170)
Q Consensus 47 ---~~~~~~~~~~~-----~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (170)
.-..+.++... -.+.+.|.||-+ +..+-...+...+|++|+|.++.+..+... +.++..... .+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCC
Confidence 00001111111 146788999943 444556666778999999999876543333 444443333 245
Q ss_pred eEEEEEeCCCCCCCcccCHHHHHHHHHhcC--------CeEEEeecCCC
Q 030856 116 IIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAG 156 (170)
Q Consensus 116 ~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~S~~~~ 156 (170)
.++++.||+|.....+...++.....+... =.++.||+++-
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence 577788999986544444444444433332 15677886643
No 349
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7.6e-09 Score=79.42 Aligned_cols=121 Identities=22% Similarity=0.186 Sum_probs=84.7
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC--------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
.+.....-.+++++..-..|||||.+.|.....- .+...+.+++.....+..-.+.+.+.++|+||
T Consensus 2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg 81 (887)
T KOG0467|consen 2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG 81 (887)
T ss_pred CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence 4566677889999999999999999998854221 11223334444444444445667899999999
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~ 126 (170)
+.+|.+.......-+|+.++++|+...-.-+.. ..+++....+..+++|+||+|.
T Consensus 82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred ccchhhhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhhh
Confidence 999999999999999999999998753221211 1122222245677888999994
No 350
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.91 E-value=8.7e-09 Score=74.41 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=56.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhh---
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER--- 70 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 70 (170)
++++|+|.|++|||||++.++.... +....|..+.+.....+.+.+. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998877 5433344433333333333331 23678999999432
Q ss_pred ----hhhhhhhhhcCCcEEEEEEeCC
Q 030856 71 ----FRSLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 71 ----~~~~~~~~~~~~d~~i~v~d~~ 92 (170)
.....-..++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1223334577899999999985
No 351
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=4.3e-08 Score=66.55 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=101.5
Q ss_pred ceeEEEEcCCCC--CHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 9 KYKLVFLGDQSV--GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 9 ~~~i~i~G~~~~--GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
+.-++++|..|+ ||.+|+.+|....+..+..+....++..+++........+.+.=.+--+++.-..........+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 456789999998 999999999998887666666666777776544333322322222221222222222233457899
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-------------------------------------
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------------------------------- 129 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------------------------------- 129 (170)
++||++...++..+..|+....-.. =-..+.++||.|....
T Consensus 84 mvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 9999999999999999976432211 1235677899997532
Q ss_pred -------cccCHHHHHHHHHhcCCeEEEeecCCC------------CChHHHHHHHH
Q 030856 130 -------RQVSIEEGEAKSRELNVMFIETSAKAG------------FNIKGCSPTIR 167 (170)
Q Consensus 130 -------~~~~~~~~~~~~~~~~~~~~~~S~~~~------------~~v~~~~~~l~ 167 (170)
.-.....+.++|.++|+.+++.++.+. .|++.+|.++.
T Consensus 162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ 218 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALN 218 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhh
Confidence 002245678889999999999887433 36667766654
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.87 E-value=4.3e-09 Score=70.16 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=36.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC---------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
..+++++|.+|+|||||+|+|.+... ..+..|..+.+ ......+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence 46899999999999999999997543 12223332222 22333332 478999999
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.86 E-value=1.1e-08 Score=67.12 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=37.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
..++++++|.+|+|||||+|++.+.... ....+..+.. ......+ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999987653 2222222222 2223332 35789999994
No 354
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.85 E-value=2.1e-08 Score=65.73 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=62.3
Q ss_pred cCChh-hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh
Q 030856 65 TAGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (170)
Q Consensus 65 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~ 143 (170)
.||+. .........+.++|++++|+|++++..-... ..... . .+.|+++|+||+|+.+.... ....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~----~-~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI----L-GNKPRIIVLNKADLADPKKT--KKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH----h-cCCCEEEEEehhhcCChHHH--HHHHHHHHh
Confidence 34533 3344566678899999999999876432221 11111 1 25789999999998543211 111122233
Q ss_pred cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 144 LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 144 ~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+..++.+|++++.|++++.+.+.+.
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34578999999999999999988764
No 355
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.84 E-value=1.6e-08 Score=65.28 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=37.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
...+++++|.+|+|||||+|++.++... .+.++.+.+........++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999976532 2233433332222222222 589999998
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.83 E-value=3.3e-08 Score=63.78 Aligned_cols=82 Identities=20% Similarity=0.134 Sum_probs=53.9
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (170)
|++++|+|+.+|.+.... ++.. ......+.|+++|+||+|+....++ .+....+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 789999999887554432 2221 1112247899999999998543211 11112233333557899999999999999
Q ss_pred HHHHHh
Q 030856 163 SPTIRR 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
.+.+.+
T Consensus 77 ~~~i~~ 82 (155)
T cd01849 77 ESAFTK 82 (155)
T ss_pred HHHHHH
Confidence 998864
No 357
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=5.4e-08 Score=68.72 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=93.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhc---C-------CCC----CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMY---D-------KFD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~---~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
.+.+++||.-+|.-..|||||-.++.. . +++ .......+++.....+.+.-......=.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 356789999999999999999777652 1 111 11122233333333333333334455669999998
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc---cCHHHHHHHHHhcCC-
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ---VSIEEGEAKSRELNV- 146 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~---~~~~~~~~~~~~~~~- 146 (170)
|-.....-....|+.|+|+..+|... ...++.+...++ .+ -..+++++||.|+.+..+ +-.-+++++...+|+
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQ-VG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQ-VG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHH-cC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 88777777778899999999998532 333433332232 22 234788899999874432 223456667777654
Q ss_pred ----eEEEeec---CCCC
Q 030856 147 ----MFIETSA---KAGF 157 (170)
Q Consensus 147 ----~~~~~S~---~~~~ 157 (170)
|++.=|| .+|.
T Consensus 207 Gd~~PvI~GSAL~ALeg~ 224 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGR 224 (449)
T ss_pred CCCCCeeecchhhhhcCC
Confidence 7777554 4554
No 358
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.1e-08 Score=75.42 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=83.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-----C-----------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-----N-----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
.+..+|.+.-.-.+||||+-++++..... . ......++..+.......+..+++.++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 35578899999999999999987742110 0 1112233444444444445578999999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
+.-..+..++--|+.+++++....-.-+....|.+ +.+ -++|.+.++||+|+..
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~r---y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKR---YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHh---cCCCeEEEEehhhhcC
Confidence 88888888899999999999876544444455533 333 3799999999999853
No 359
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.81 E-value=2.1e-08 Score=71.00 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=39.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..++++++|.||+|||||+|++.+... .....+..+.... .+..+. .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeCC---cEEEEECCCcC
Confidence 568999999999999999999998765 2333344333332 222222 47899999954
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.80 E-value=2.3e-08 Score=70.42 Aligned_cols=56 Identities=25% Similarity=0.343 Sum_probs=38.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
..++++++|.||+|||||+|++.+.... ....+..+... ..+.... .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 4689999999999999999999976543 22233333222 2232322 4789999996
No 361
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.79 E-value=9.7e-09 Score=68.86 Aligned_cols=113 Identities=13% Similarity=0.143 Sum_probs=78.1
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D 125 (170)
...+.+.|.+|+..-+..|.+++.+...++|++.++ +...++.-...+..+..+.. .+.+++++.||.|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 456789999999988899999999988888876655 33445555566666655543 6789999999999
Q ss_pred CCCC----------------cccCHHHHHHHHHhc---------CC-eEEEeecCCCCChHHHHHHHHhh
Q 030856 126 LVEK----------------RQVSIEEGEAKSREL---------NV-MFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 126 ~~~~----------------~~~~~~~~~~~~~~~---------~~-~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+.++ .+.+.+.++++.... .+ .-..+-|.+.+|+.-+|..+.+.
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDt 347 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 347 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHH
Confidence 8643 233455666665432 12 22335577778999888876543
No 362
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.79 E-value=2.6e-06 Score=54.24 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=75.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecC-Chhh---------------
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQER--------------- 70 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~--------------- 70 (170)
...++|++.|+|||||||++.++...-....+ ... -+....+.-++...-|.+.|+. |...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 34689999999999999999988753221111 111 2222233334455556666665 2110
Q ss_pred ----------hhhhhhhhhcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHH
Q 030856 71 ----------FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA 139 (170)
Q Consensus 71 ----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~ 139 (170)
.....+..+..+|++|+ |--.| ++.. ..+...+......+.|++.++.+.+.. ...++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~ 148 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQR 148 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHH
Confidence 11122233445676654 43322 2222 444455555555678888888777641 11222
Q ss_pred HHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 140 KSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 140 ~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+ +..+..++. .+.+|-+.+++.+...
T Consensus 149 i-k~~~~v~v~---lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 149 I-KKLGGVYVF---LTPENRNRILNEILSV 174 (179)
T ss_pred h-hhcCCEEEE---EccchhhHHHHHHHHH
Confidence 3 333333332 3445555777777654
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.78 E-value=1.4e-07 Score=67.60 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=78.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC---------Ccc------------ceeeeeeeEEEEE-------------e
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQ------------ATIGIDFLSKTMY-------------L 53 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~---------~~~------------~~~~~~~~~~~~~-------------~ 53 (170)
..-.++++|++|+||||++..+....... +.. .-.+..+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999877531111 000 0011111111000 0
Q ss_pred CCeEEEEEEEecCChhhhhhh----hhhh--------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEE
Q 030856 54 EDRTVRLQLWDTAGQERFRSL----IPSY--------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVG 121 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~ 121 (170)
....+.+.++||||....... ...+ -...+..++|.|++.. .+.+... ....... -+.-+|+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~~---~~~giIl 266 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEAV---GLTGIIL 266 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhhC---CCCEEEE
Confidence 113357899999996532221 1111 1246788999998843 2222221 2222211 2346777
Q ss_pred eCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (170)
||.|.... ...+...+...++|+..++ +|++++++
T Consensus 267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 99995321 2445556677799988887 77777664
No 364
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.78 E-value=2e-08 Score=72.06 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=39.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..++++++|.|+||||||||+|.+...- ....|..+...+ .+..+. .+.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLDD---GIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcCC---CeEEecCCCcC
Confidence 4588999999999999999999998763 333443333333 232333 37899999944
No 365
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.77 E-value=2.5e-07 Score=63.19 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=54.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCCc-cceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhh------hhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTY-QATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRS------LIP 76 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~ 76 (170)
.+-.-|+++|++++|||+|+|.+.+. .+.... .+..+.....+..... +....+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567899999999999999999998 553221 1111111222221111 2346799999999654322 112
Q ss_pred hhhcC--CcEEEEEEeCCC-hhhHHhHH
Q 030856 77 SYIRD--SSVAVVVYDVAS-RQSFLNTS 101 (170)
Q Consensus 77 ~~~~~--~d~~i~v~d~~~-~~~~~~~~ 101 (170)
..+.. +|.+|+..+... ...++.+.
T Consensus 85 ~~l~~llss~~i~n~~~~~~~~~~~~l~ 112 (224)
T cd01851 85 FALATLLSSVLIYNSWETILGDDLAALM 112 (224)
T ss_pred HHHHHHHhCEEEEeccCcccHHHHHHHH
Confidence 22233 788888777654 33344433
No 366
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.76 E-value=2.5e-08 Score=64.31 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=38.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
....+++++|.+|+|||||+|.+.+... .....+..+.+..... .+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--LD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--ec---CCEEEEECCC
Confidence 3568899999999999999999998653 2222333333333222 22 2588999998
No 367
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.8e-08 Score=72.96 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=92.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--------CCCC--------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD--------KFDN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
.+-.+|+++..-.+||||.-.++++- ..+. ...+..+++.+...+..+.++.++.++||||+.+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 45578999999999999999998742 1111 1123356677777888888999999999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
++-..+.+++--|+++.|||.+..-.-+.+..|.+ ...-++|...++||+|...
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 99999999999999999999987655566677733 3335789999999999753
No 368
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.74 E-value=7.4e-08 Score=61.13 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=52.9
Q ss_pred hhhhcCCcEEEEEEeCCChhhHH--hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeec
Q 030856 76 PSYIRDSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 153 (170)
...+..+|++++|+|+.++.+.. .+..++... ..+.|+++|+||+|+.++.. .....+.....+..++++|+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 44578899999999998875533 233333322 24689999999999854332 23344555566788999999
Q ss_pred CCCCC
Q 030856 154 KAGFN 158 (170)
Q Consensus 154 ~~~~~ 158 (170)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98864
No 369
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.74 E-value=2e-08 Score=64.51 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-.++++|++|||||||+|+|....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 567999999999999999999863
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.73 E-value=1.6e-07 Score=65.90 Aligned_cols=93 Identities=16% Similarity=0.097 Sum_probs=55.8
Q ss_pred EEEEEEEecCChhhhhhhhh-------hhh-----cCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030856 57 TVRLQLWDTAGQERFRSLIP-------SYI-----RDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvv~nK 123 (170)
.+.+.++||||......... ... ..+|..++|.|++.. +.+.... .+.+.. -+--+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~----~f~~~~---~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAK----VFNEAV---GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHH----HHHhhC---CCCEEEEEc
Confidence 46789999999654322211 111 138999999998743 2333222 222222 134667799
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (170)
.|.... ...+...+...++|+..++ +|++++++
T Consensus 227 lDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 227 LDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred cCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhC
Confidence 996332 2445556667788888887 77777665
No 371
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.72 E-value=8.4e-08 Score=79.42 Aligned_cols=114 Identities=22% Similarity=0.248 Sum_probs=70.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCc----cceeeee-eeEEEEEeCCeEEEEEEEecCChh--------hhhhhhhhh
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGID-FLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSY 78 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~ 78 (170)
.+++|++|+||||+++.- +-.++-.. ..+.+.. .....+...+ ...++||+|.. .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999975 33333111 0110100 0001111112 45689999922 122234444
Q ss_pred hc---------CCcEEEEEEeCCC-----hhh----HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856 79 IR---------DSSVAVVVYDVAS-----RQS----FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 79 ~~---------~~d~~i~v~d~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~ 129 (170)
+. ..|++|+++|+.+ ++. -..++..+.++....+-..|+.|+.||+|+...
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 32 4799999999763 221 134577788888888889999999999998643
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=98.71 E-value=1.8e-07 Score=67.30 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=55.1
Q ss_pred EEEEEEecCChhhhhhh----hhhh--hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
+.+.++||+|....... .... .-+.|.+++|.|++... ..+.+.. +.... -+--+++||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~----f~~~~---~~~giIlTKlD~~~-- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE----FNEAV---GIDGVILTKVDADA-- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH----HHhcC---CCCEEEEeeecCCC--
Confidence 46899999996532211 1111 22578899999987532 2222222 22211 22456679999743
Q ss_pred ccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
....+...+...+.|+..++ +|++++++.
T Consensus 294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred --CccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 22345556666788888887 788887654
No 373
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.71 E-value=1e-07 Score=67.19 Aligned_cols=97 Identities=24% Similarity=0.224 Sum_probs=62.6
Q ss_pred cCChhh-hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh
Q 030856 65 TAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (170)
Q Consensus 65 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~ 143 (170)
.||+.. ........+..+|++++|+|+.+|.+.... ++.... .+.|+++|+||+|+.+.... ....+....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHH
Confidence 356442 233456668899999999999876443321 111111 25799999999998542211 111112233
Q ss_pred cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 144 LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 144 ~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+..++.+|++++.|++++.+.+.+.
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 45688999999999999998888653
No 374
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.2e-08 Score=70.98 Aligned_cols=162 Identities=18% Similarity=0.172 Sum_probs=97.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC---CCCCCccceeeeeee--------------------------------EEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFL--------------------------------SKTM 51 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~---~~~~~~~~~~~~~~~--------------------------------~~~~ 51 (170)
.-.++|.-+|....||||+++++.+- ++..+..+..+.... ....
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 34689999999999999999987753 111111111110000 0000
Q ss_pred EeCC---eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 52 YLED---RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 52 ~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
...+ .-..+.|.|+||++-.....-.-..-.|+.++++..+.+..-....+.+..+.-. .=..++++-||.|+..
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli~ 193 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLIK 193 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhhh
Confidence 0011 1135789999998865544333333468888888776432222222222222211 1245788899999976
Q ss_pred Cccc--CHHHHHHHHHhc---CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 129 KRQV--SIEEGEAKSREL---NVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 129 ~~~~--~~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
+.+. ..++.+.|.+.- +.|++++||.-..|++-+.++|+++|
T Consensus 194 e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 194 ESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 5433 235556666543 56999999999999999999999875
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.68 E-value=2.1e-07 Score=60.22 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
+.++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999998865
No 376
>PRK13796 GTPase YqeH; Provisional
Probab=98.68 E-value=2.9e-07 Score=67.31 Aligned_cols=91 Identities=27% Similarity=0.402 Sum_probs=60.3
Q ss_pred hhhhhhhhhhcCCc-EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH----HHHHhc
Q 030856 70 RFRSLIPSYIRDSS-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSREL 144 (170)
Q Consensus 70 ~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~----~~~~~~ 144 (170)
++....... ...+ .+++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+... ....++.. .+++..
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 444444433 4444 999999988742 22333444433 26789999999999642 33333333 335556
Q ss_pred CC---eEEEeecCCCCChHHHHHHHHh
Q 030856 145 NV---MFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 145 ~~---~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
++ .++.+||+++.|++++++.|.+
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 66 6899999999999999999865
No 377
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.5e-07 Score=64.88 Aligned_cols=117 Identities=15% Similarity=0.272 Sum_probs=70.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCc----cceeeeeeeEEEEEeCCeEEEEEEEecCChhh-------hhh---
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRS--- 73 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~--- 73 (170)
-.++|+.+|..|.|||||++.|++-.+.... .|............-.+-.+++++.||.|..+ |..
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3689999999999999999999988775332 23333222233333346678999999999322 111
Q ss_pred ----hhhhh-------------h--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 74 ----LIPSY-------------I--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 74 ----~~~~~-------------~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
....| + .+.+++++.+..+.. ++..+.- ...+..+.++.++-|+-|.|...
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDL---vtmk~LdskVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDL---VTMKKLDSKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHH---HHHHHHhhhhhhHHHHHHhhhhh
Confidence 11111 1 145788888887752 3333321 11122234577777788998654
No 378
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.63 E-value=4.2e-06 Score=63.07 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=57.5
Q ss_pred EEEEEecCC-------------hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030856 59 RLQLWDTAG-------------QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (170)
Q Consensus 59 ~~~i~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~ 124 (170)
+..+.|.|| .+....+...|+.+.++||+|+--. +.+.-+.....+-..++ .+.-.++|.||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 678999999 2334567888899999999998633 23333333333433333 466789999999
Q ss_pred CCCCCcccCHHHHHHHHHh
Q 030856 125 DLVEKRQVSIEEGEAKSRE 143 (170)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~ 143 (170)
|+.+..-.++..++.....
T Consensus 490 DlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred chhhhccCCHHHHHHHHhc
Confidence 9988777788888877654
No 379
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.61 E-value=2.4e-07 Score=65.62 Aligned_cols=97 Identities=22% Similarity=0.200 Sum_probs=62.9
Q ss_pred cCChhh-hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh
Q 030856 65 TAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (170)
Q Consensus 65 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~ 143 (170)
.||+.. ........+..+|++++|+|+.++.+.+. .++.... .+.|+++|+||+|+.+... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 566542 23345566889999999999987644332 1222221 2588999999999853211 1112222234
Q ss_pred cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 144 LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 144 ~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+.+++.+|++++.|++++.+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 46788999999999999999887653
No 380
>PRK12288 GTPase RsgA; Reviewed
Probab=98.60 E-value=1.3e-07 Score=68.50 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++|+|.+|||||||+|+|.+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 378999999999999999997643
No 381
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.58 E-value=2.1e-06 Score=63.58 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=70.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc------CCC---CC-Cccc-----------eeeeeeeEEEEEeC-------------
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY------DKF---DN-TYQA-----------TIGIDFLSKTMYLE------------- 54 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~------~~~---~~-~~~~-----------~~~~~~~~~~~~~~------------- 54 (170)
+--|+++|++|+||||++.+|.. .+. .. .+.+ ..+..+.......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 46789999999999999998863 111 01 1110 01111111000000
Q ss_pred CeEEEEEEEecCChhhhhhh----hhhh--hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 55 DRTVRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
...+.+.|+||+|....... ...+ ....+-+++|.|++-.. ..+.+ ..+... --+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a----~~F~~~---~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA----KAFKDS---VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH----HHHHhc---cCCcEEEEECccCC
Confidence 12467899999995543221 1111 22467899999987432 22222 222221 13456778999963
Q ss_pred CCcccCHHHHHHHHHhcCCeEEEee
Q 030856 128 EKRQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~S 152 (170)
. ..-.+.......+.|+..++
T Consensus 253 a----rgG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 253 A----KGGGALSAVAATKSPIIFIG 273 (429)
T ss_pred C----CccHHhhhHHHHCCCeEEEc
Confidence 2 22334555666677666654
No 382
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.57 E-value=5.5e-07 Score=64.74 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=87.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC------------------ccceeeeeeeEE------------------
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSK------------------ 49 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~------------------~~~~~~~~~~~~------------------ 49 (170)
+--+.+|+++|...+|||||+-.|.++..++. ..++.+.+....
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 34578999999999999999988876544321 111222221111
Q ss_pred -EEEeCCeEEEEEEEecCChhhhhhhhhhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856 50 -TMYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 50 -~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~ 126 (170)
.-...+..--++|+|.+|++.|......-+. -.|...+++-++-. -....++. +.-.....+|+++|.+|+|+
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEH---LgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEH---LGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHh---hhhhhhhcCcEEEEEEeecc
Confidence 1111222235799999999987654332222 24666666665421 11111222 22222357999999999998
Q ss_pred CCCccc--CHHHHHHHHH--------------------------hcCCeEEEeecCCCCChHHHH
Q 030856 127 VEKRQV--SIEEGEAKSR--------------------------ELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 127 ~~~~~~--~~~~~~~~~~--------------------------~~~~~~~~~S~~~~~~v~~~~ 163 (170)
..+..+ +.....++.+ +.-|++|.+|-.+|.|++-+.
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence 754322 1111222222 223688999999999987643
No 383
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.55 E-value=4.8e-06 Score=60.97 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=89.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC-----------------CCC----CCccceeeeeeeEE---EEEe-CCeEEEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD-----------------KFD----NTYQATIGIDFLSK---TMYL-EDRTVRLQL 62 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~-----------------~~~----~~~~~~~~~~~~~~---~~~~-~~~~~~~~i 62 (170)
-.+=|++|||..+|||||++++-.. ..| ..+.-|....+.+. .+.. ++..+++++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 3467899999999999999997742 111 11222222233322 2223 466789999
Q ss_pred EecCChh-----hh---------hhhhhhh---------------hc--CCcEEEEEEeCC--C--hhhHHhH-HHHHHH
Q 030856 63 WDTAGQE-----RF---------RSLIPSY---------------IR--DSSVAVVVYDVA--S--RQSFLNT-SKWIDE 106 (170)
Q Consensus 63 ~D~~g~~-----~~---------~~~~~~~---------------~~--~~d~~i~v~d~~--~--~~~~~~~-~~~~~~ 106 (170)
+|+.|.. .| ...|..+ +. ..-++++.-|-+ + ++.|... .+-+.+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 9998811 00 0001110 11 234677766643 2 3444333 333344
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC--CChHHHHHHH
Q 030856 107 VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG--FNIKGCSPTI 166 (170)
Q Consensus 107 ~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~v~~~~~~l 166 (170)
+.. -+.|+++++|-.+- ......+.+.++..+++++++++++.+- +.+..+++.+
T Consensus 176 Lk~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 176 LKE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 433 47999999998873 3344567788888999999999887643 3444444443
No 384
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.54 E-value=8.2e-07 Score=60.81 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=50.3
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh-------hHHhHHHHHHHHHH----hcCCCCeEEEEEeCCCC
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-------SFLNTSKWIDEVRT----ERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~vvv~nK~D~ 126 (170)
+.++.+|.+|+.+.+..|..++....++|||..++.-. +-..+++-+..+.. ..-..+.+++++||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 56899999999999999999999999999999987321 11223332222222 12245778999999997
Q ss_pred C
Q 030856 127 V 127 (170)
Q Consensus 127 ~ 127 (170)
.
T Consensus 282 l 282 (379)
T KOG0099|consen 282 L 282 (379)
T ss_pred H
Confidence 4
No 385
>PRK01889 GTPase RsgA; Reviewed
Probab=98.54 E-value=7.5e-07 Score=64.94 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=56.7
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
..++|.+++|+++..+-....+..++..+.. .+++.++|+||+|+.+......+....+ ..+.+++.+|++++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 5689999999999633333344554444333 3677888999999965321111222222 3467999999999999
Q ss_pred hHHHHHHHH
Q 030856 159 IKGCSPTIR 167 (170)
Q Consensus 159 v~~~~~~l~ 167 (170)
++++..+|.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 999998875
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.53 E-value=1.8e-07 Score=67.77 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++|+|++|+|||||+|+|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 47999999999999999999754
No 387
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.51 E-value=2.7e-07 Score=63.87 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-.++++|++|+|||||+|++.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 468999999999999999999754
No 388
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.50 E-value=1.9e-06 Score=56.24 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=67.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEec-CChh--------------------
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQE-------------------- 69 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~-------------------- 69 (170)
||++.|++|+|||||+++++..-... ..+..++ .......++...-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~Gf--~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGGF--YTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEEE--EEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccceE--EeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999988543111 1122222 1122223344444555555 2211
Q ss_pred --hhhh----hhhhhhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCC-CCCCCcccCHHHHHHHH
Q 030856 70 --RFRS----LIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT-DLVEKRQVSIEEGEAKS 141 (170)
Q Consensus 70 --~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~vvv~nK~-D~~~~~~~~~~~~~~~~ 141 (170)
.+.. .....+..+| ++++|=-.+ ++. ...|.+.+......+.|++.++.+. +. ...+++.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence 0111 1111124555 666673322 111 2345555555555678888887776 32 2346677
Q ss_pred HhcCCeEEEeecCCCCCh
Q 030856 142 RELNVMFIETSAKAGFNI 159 (170)
Q Consensus 142 ~~~~~~~~~~S~~~~~~v 159 (170)
+..++.+++++..+.+.+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 777899999977766554
No 389
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.50 E-value=2.4e-06 Score=62.34 Aligned_cols=140 Identities=12% Similarity=0.082 Sum_probs=72.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC--C-Cccceeeeeee---------------EEE-EEe-----------CCeEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFD--N-TYQATIGIDFL---------------SKT-MYL-----------EDRTV 58 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~--~-~~~~~~~~~~~---------------~~~-~~~-----------~~~~~ 58 (170)
.-.++++|++|+||||++.+|...... . ......+.+.+ ... ... .....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 457889999999999999998754210 0 11111111111 000 000 01234
Q ss_pred EEEEEecCChhhhhhhhhh---hhc---CCcEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCC
Q 030856 59 RLQLWDTAGQERFRSLIPS---YIR---DSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVEK 129 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~---~~~---~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~ 129 (170)
.+.++||+|.......... .+. ...-.++|++++. .+.+......+.......... -+--+|.||.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 7899999996643322111 122 2345688888875 344444333222222111000 12345669999632
Q ss_pred cccCHHHHHHHHHhcCCeEEEee
Q 030856 130 RQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~S 152 (170)
..-.+...+...++|+..++
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEe
Confidence 33556666777777666654
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.47 E-value=3.3e-07 Score=64.26 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
..+++|++|+|||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5689999999999999999974
No 391
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.46 E-value=1.6e-05 Score=52.42 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=59.4
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~ 135 (170)
..+.+.++|+|+... ......+..+|.++++...+. .+...+...++.+... +.|+.+|+||.|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 356789999997542 233455788999999999773 4556666666655543 4678899999996322 345
Q ss_pred HHHHHHHhcCCeEEE
Q 030856 136 EGEAKSRELNVMFIE 150 (170)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (170)
+.+++++..+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888887653
No 392
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.46 E-value=3.4e-07 Score=66.88 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=36.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
.++.++|.+|+|||||+|++.+... ..+..|..+.+.. ....++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCC---CCEEEECCCCCC
Confidence 5899999999999999999997532 1222233332222 222222 257999999543
No 393
>PRK13695 putative NTPase; Provisional
Probab=98.46 E-value=7.9e-06 Score=53.71 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=43.1
Q ss_pred hcCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856 79 IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (170)
+.++++ +++|--.+ +... ..+...+......+.|++++.+|... ......+....++.++++ +.+
T Consensus 94 l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~ 159 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPE 159 (174)
T ss_pred cCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cch
Confidence 445666 57772111 1111 22333333333457899999887532 133455666677777777 444
Q ss_pred ChHHHHHHHHhhC
Q 030856 158 NIKGCSPTIRRLI 170 (170)
Q Consensus 158 ~v~~~~~~l~~~i 170 (170)
|=+++.+.+.++|
T Consensus 160 ~r~~~~~~~~~~~ 172 (174)
T PRK13695 160 NRDSLPFEILNRL 172 (174)
T ss_pred hhhhHHHHHHHHH
Confidence 5567777776643
No 394
>PRK13796 GTPase YqeH; Provisional
Probab=98.45 E-value=3.9e-07 Score=66.64 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=35.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..++.++|.+|+|||||+|+|...... .+..|.++.+.. .+..++. ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCCC---cEEEECCCcc
Confidence 357999999999999999999864311 122233333322 2222222 3799999964
No 395
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=1.3e-06 Score=71.51 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=66.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeC-CeEEEEEEEecCChh--------hhhhhhhhh---
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE--------RFRSLIPSY--- 78 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~--------~~~~~~~~~--- 78 (170)
-+++|++|+||||++..-- ..++ .......+..... +..++ .-+-.-.++||.|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 3789999999999986522 2222 1111111101000 11111 111245788998822 122334433
Q ss_pred ------hcCCcEEEEEEeCCC-----hhh----HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 79 ------IRDSSVAVVVYDVAS-----RQS----FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 79 ------~~~~d~~i~v~d~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
.+..|+||++.|+.+ +.. ...++..++++.....-..|++|++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 235799999999763 111 22356667777777777899999999999865
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.39 E-value=9.2e-06 Score=61.56 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=70.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC---Cccceeeeee---------------eEEEE-EeC-----------CeEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDF---------------LSKTM-YLE-----------DRTV 58 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~---------------~~~~~-~~~-----------~~~~ 58 (170)
.-.|+|+|+.|+||||++.+|....... ........+. ....+ ... ...+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4578999999999999998877521100 0000000000 00000 000 1236
Q ss_pred EEEEEecCChhhhhhhhhh---hhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC
Q 030856 59 RLQLWDTAGQERFRSLIPS---YIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~ 133 (170)
.+.|+||+|.......... .+. .....++|++.+. +...+...+..+.. ..+.-+|+||.|.. ..
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt----~~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDET----GR 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCc----cc
Confidence 7899999995433221110 011 1234566667653 23333333333332 23456788999962 23
Q ss_pred HHHHHHHHHhcCCeEEEee
Q 030856 134 IEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~S 152 (170)
...+.......++++..++
T Consensus 500 lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVT 518 (559)
T ss_pred hhHHHHHHHHhCCCEEEEe
Confidence 4666777778888776664
No 397
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.38 E-value=1.6e-05 Score=57.13 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=47.0
Q ss_pred EEEEEEecCChhhhhhhhhhhhc--------CCcEEEEEEeCCChhhH-HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
....++++.|..+.......+.. ..++++.++|+.+-... +.......++.. .-++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 34678899997655554444321 24789999998753221 111111122222 1277789999875
Q ss_pred CcccCHHHHHHHHHhcC--CeEEEee
Q 030856 129 KRQVSIEEGEAKSRELN--VMFIETS 152 (170)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~S 152 (170)
+. +..++..+..+ ++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 44555555443 4666554
No 398
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.35 E-value=2.5e-05 Score=56.08 Aligned_cols=88 Identities=30% Similarity=0.298 Sum_probs=50.8
Q ss_pred EEEEEEecCChhhhhhhhhhhhc--------CCcEEEEEEeCCChhh-HHhHHHH-HHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVVVYDVASRQS-FLNTSKW-IDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
....++++.|.-+-......+.. .-|+++-|+|+.+-.. ....... ..++.. .=++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 34677888885544333333322 3578999999876322 2222222 222222 127788999998
Q ss_pred CCcccCHHHHHHHHHhcC--CeEEEeec
Q 030856 128 EKRQVSIEEGEAKSRELN--VMFIETSA 153 (170)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~--~~~~~~S~ 153 (170)
+... .+..+...+..+ .+++.+|.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 7654 345555555554 48888776
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.31 E-value=1e-05 Score=53.03 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=44.9
Q ss_pred EEEEEEEecCChhhh----hhhhhhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 57 TVRLQLWDTAGQERF----RSLIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
...+.+.|++|.... ......+. ...+.+++|++...... ...+...+.... + ..-+|.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence 345788999996422 11112222 24899999999865432 222333333332 2 356667999964322
Q ss_pred ccCHHHHHHHHHhcCCeEE
Q 030856 131 QVSIEEGEAKSRELNVMFI 149 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~ 149 (170)
..+...+...++|+.
T Consensus 156 ----g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ----GAALSIRAVTGKPIK 170 (173)
T ss_pred ----chhhhhHHHHCcCeE
Confidence 223335666666543
No 400
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.31 E-value=1.7e-06 Score=61.40 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-.++++|++|+|||||+|.|.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5789999999999999999998654
No 401
>PRK00098 GTPase RsgA; Reviewed
Probab=98.30 E-value=2.3e-06 Score=61.02 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.-.++++|++|+|||||+|+|.+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 34689999999999999999997644
No 402
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=98.30 E-value=6.1e-05 Score=48.68 Aligned_cols=143 Identities=9% Similarity=0.073 Sum_probs=99.6
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcC
Q 030856 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (170)
Q Consensus 2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 81 (170)
+.++..+.-+|+++|..+.++..|.+++...... +......... .+ .|. + ....=..
T Consensus 8 ~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~l~Vh~a~s--LP-----Lp~--e----~~~lRpr 64 (176)
T PF11111_consen 8 DKLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------FKLKVHLAKS--LP-----LPS--E----NNNLRPR 64 (176)
T ss_pred ccCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------eeEEEEEecc--CC-----Ccc--c----ccCCCce
Confidence 4566778899999999999999999999853210 0011100000 00 111 1 1111236
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (170)
.|.|+|++|.....+++.+..-+..+....-.+ .+.++++-....+...+..++..+++..++++++.+.-.+.++...
T Consensus 65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 899999999999999999888777765544333 3556667777677788999999999999999999998888877776
Q ss_pred HHHHHHh
Q 030856 162 CSPTIRR 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+-+.|.+
T Consensus 144 lAqRLL~ 150 (176)
T PF11111_consen 144 LAQRLLR 150 (176)
T ss_pred HHHHHHH
Confidence 6666654
No 403
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.29 E-value=1e-06 Score=58.18 Aligned_cols=81 Identities=25% Similarity=0.202 Sum_probs=42.0
Q ss_pred EEEEEEecCChhhhhhh---hhh--hhcCCcEEEEEEeCCChhhHHhHHHH-HHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 58 VRLQLWDTAGQERFRSL---IPS--YIRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~---~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
....++++.|..+.... ... ..-..+.+|.++|+.+-......... ..++.. .=++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCChh-
Confidence 45678899885544443 011 12356899999998764333333222 222322 127778999986544
Q ss_pred cCHHHHHHHHHhcC
Q 030856 132 VSIEEGEAKSRELN 145 (170)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (170)
...+..++..+..+
T Consensus 158 ~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 QKIERVREMIRELN 171 (178)
T ss_dssp --HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHC
Confidence 12244555555443
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.26 E-value=1.6e-05 Score=59.35 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=72.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC----C-----C-CCccce-----------eeeeeeEEEEEe-----------CC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDK----F-----D-NTYQAT-----------IGIDFLSKTMYL-----------ED 55 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~----~-----~-~~~~~~-----------~~~~~~~~~~~~-----------~~ 55 (170)
++..|+++|++|+||||.+.++...- . . +.+.+. .+..+....... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46789999999999999988776321 1 0 111110 011111110000 00
Q ss_pred eEEEEEEEecCChhhhhhhh----hh--hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856 56 RTVRLQLWDTAGQERFRSLI----PS--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~ 129 (170)
....+.|+||+|........ .. .+..+|.+++|+|++... ........+.... + ..-+|.||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a- 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTA- 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCC-
Confidence 12378999999965432211 11 133688999999987532 1112222222211 1 2356679999532
Q ss_pred cccCHHHHHHHHHhcCCeEEEeec
Q 030856 130 RQVSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~S~ 153 (170)
..-.+...+...+.|+..++.
T Consensus 247 ---~~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 ---KGGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cccHHHHHHHHHCcCEEEEec
Confidence 235566677777887766654
No 405
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=9.3e-06 Score=57.12 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=67.6
Q ss_pred hhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEe
Q 030856 73 SLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET 151 (170)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
.+.+.-..+.|-.++++.+.+|+ +...+..++..... .++..++++||+|+.+......++........|.+++.+
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 34444455788899999988875 34445555443332 467777889999997655443345566677789999999
Q ss_pred ecCCCCChHHHHHHHHhh
Q 030856 152 SAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 152 S~~~~~~v~~~~~~l~~~ 169 (170)
|++++++++++.+++...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999999888643
No 406
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.25 E-value=1.2e-06 Score=65.03 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=40.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
.+.|++||-|||||||+||+|.+++.- .+..|..+.+++...+. -.+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-----~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-----PSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-----CCceecCCCC
Confidence 599999999999999999999998663 34445555455444432 1467889999
No 407
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.23 E-value=2.4e-06 Score=57.15 Aligned_cols=84 Identities=14% Similarity=0.055 Sum_probs=47.7
Q ss_pred EEEEEEecCChhhhhhh----hhhh--hcCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
+.+.++||+|....... ...+ ....+-+++|.+++.. +.++.... .....+ . --++.||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~----~~~~~~--~-~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA----FYEAFG--I-DGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH----HHHHSS--T-CEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH----Hhhccc--C-ceEEEEeecCCC--
Confidence 45899999995543221 1111 1257789999998753 22332222 222221 2 244469999632
Q ss_pred ccCHHHHHHHHHhcCCeEEEee
Q 030856 131 QVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S 152 (170)
..-.+...+...+.|+-.+|
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE
T ss_pred --CcccceeHHHHhCCCeEEEE
Confidence 33556777888888776665
No 408
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.22 E-value=8.2e-06 Score=42.68 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=31.0
Q ss_pred cCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030856 80 RDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D 125 (170)
.-.++++|++|.+.. .+.+.....+..++... .+.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 347899999999964 45677777788888876 4899999999998
No 409
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.21 E-value=6.6e-06 Score=52.60 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=35.2
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D 125 (170)
.+.+.++||+|... ....++..+|-++++....-.+.+..++. ..+ ...-++++||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hHh------hhcCEEEEeCCC
Confidence 45789999988542 22347888998888888662233222221 111 122367779987
No 410
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.17 E-value=1.3e-05 Score=50.70 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=61.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCC
Q 030856 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS 93 (170)
Q Consensus 14 i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (170)
.-|.+|+|||++--.+...-... ..+..-.+.- .......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL-GKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 44789999999966554321110 0011100100 0001111678999999753 333456788999999999976
Q ss_pred hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 94 RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
+.++......++.+.... ...++.+|+|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 445555555555554433 345677889999743
No 411
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.16 E-value=3e-05 Score=57.53 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=71.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeE---------------EEE-Ee-----------CCeEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS---------------KTM-YL-----------EDRTV 58 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~---------------~~~-~~-----------~~~~~ 58 (170)
.-.++++|+.|+||||++.+|.+.... .........+... ... .. .-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 458999999999999999988753110 0000000000000 000 00 01124
Q ss_pred EEEEEecCChhhhhh----hhhhhh--cCCcEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 59 RLQLWDTAGQERFRS----LIPSYI--RDSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
.+.++||+|...... ....+. ....-.++|.|++. ...+..+. ..... --+-=+++||.|...
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~---~~f~~----~~~~~~I~TKlDEt~--- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI---SAYQG----HGIHGCIITKVDEAA--- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH---HHhcC----CCCCEEEEEeeeCCC---
Confidence 678999999554222 222221 12346778888873 33333322 22211 122345569999632
Q ss_pred cCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 132 VSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
..-.+...+...++++..++ +|.++
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 34556667777788776664 44444
No 412
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.16 E-value=3.5e-05 Score=60.97 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=72.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CC-ccceeeeeeeE---------------EEE-Ee-----------CCeEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD--NT-YQATIGIDFLS---------------KTM-YL-----------EDRTVR 59 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~--~~-~~~~~~~~~~~---------------~~~-~~-----------~~~~~~ 59 (170)
--++++|+.|+||||.+.+|...... .. .....+.+.+. ... .. .-..+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 46799999999999999998854311 00 00011111100 000 00 012346
Q ss_pred EEEEecCChhhhhh----hhhhh--hcCCcEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856 60 LQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 60 ~~i~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~ 132 (170)
+.++||+|...... ..... ....+-.++|.|.+. .+.+..+...+. .....+ +-=+|+||.|...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~---~~~~~~-i~glIlTKLDEt~---- 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR---HGAGED-VDGCIITKLDEAT---- 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh---hcccCC-CCEEEEeccCCCC----
Confidence 89999999433221 11111 123456788888874 333443333222 211111 2345679999632
Q ss_pred CHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 133 SIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
..-.+.......++|+..++ +|++|
T Consensus 338 ~~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred CccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 33556667777788776664 44555
No 413
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.15 E-value=6.5e-05 Score=54.97 Aligned_cols=134 Identities=18% Similarity=0.162 Sum_probs=73.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC--C-CCccceeeeeeeEE-----------------EEEe----------CCeE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF--D-NTYQATIGIDFLSK-----------------TMYL----------EDRT 57 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~--~-~~~~~~~~~~~~~~-----------------~~~~----------~~~~ 57 (170)
+.-.|+++||.||||||-+-+|..... . .....-.+.|.+.. .... .-..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 356789999999999999988876544 1 11111122221111 0000 0123
Q ss_pred EEEEEEecCChhhhhhh----hhhhhcC--CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 58 VRLQLWDTAGQERFRSL----IPSYIRD--SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
+.+.++||.|...+... ...++.. ..-..+|++++.. .+.++..+..+... ++ --++.||.|..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~i-~~~I~TKlDET---- 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---PI-DGLIFTKLDET---- 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---Cc-ceeEEEccccc----
Confidence 57999999996654332 3334333 3455667777632 44555544444321 11 24455999953
Q ss_pred cCHHHHHHHHHhcCCeEEEe
Q 030856 132 VSIEEGEAKSRELNVMFIET 151 (170)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~ 151 (170)
......-..+...+.|+-.+
T Consensus 352 ~s~G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 352 TSLGNLFSLMYETRLPVSYV 371 (407)
T ss_pred CchhHHHHHHHHhCCCeEEE
Confidence 23455666666666665554
No 414
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=3.7e-06 Score=60.92 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=91.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC------------------CC-------------CccceeeeeeeEEEEEeC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------------------DN-------------TYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~------------------~~-------------~~~~~~~~~~~~~~~~~~ 54 (170)
+...+++.++|.-.+||||+-..+..... .. +....-+.......+ .
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F--E 153 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF--E 153 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE--E
Confidence 45679999999999999998665442100 00 000001111112222 2
Q ss_pred CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh---hhHHhH--HHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNT--SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~--~~~~~~~~~~~~~~~~~vvv~nK~D~~~~ 129 (170)
-...++++.|+||+..|-.....-..++|+-++|+++-.. ..|+.- ......+.+.. .-...++++||+|-..-
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTV 232 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCcc
Confidence 2335789999999988877777777889999999887432 223332 22223333333 23456777899996431
Q ss_pred c--ccC----HHHHHHHHHhc------CCeEEEeecCCCCChHHHH
Q 030856 130 R--QVS----IEEGEAKSREL------NVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 130 ~--~~~----~~~~~~~~~~~------~~~~~~~S~~~~~~v~~~~ 163 (170)
. ..- .+....+.+.. ...|++||..+|.++.+..
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 1 111 23333344432 2479999999999988753
No 415
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.12 E-value=5.1e-05 Score=56.62 Aligned_cols=87 Identities=13% Similarity=0.031 Sum_probs=49.5
Q ss_pred EEEEEEEecCChhhhhhh-hh---hh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 57 TVRLQLWDTAGQERFRSL-IP---SY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~-~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
.+.+.|+||+|....... .. .+ .-..+.+++|+|.+... ........+.... + ..-+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~-- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDA-- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc--
Confidence 356899999995432221 11 11 23578899999987432 2222323333222 1 2355679999532
Q ss_pred ccCHHHHHHHHHhcCCeEEEeec
Q 030856 131 QVSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S~ 153 (170)
....+...+...++|+..++.
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 223367777778887776654
No 416
>PRK10867 signal recognition particle protein; Provisional
Probab=98.12 E-value=4e-05 Score=57.20 Aligned_cols=86 Identities=10% Similarity=0.010 Sum_probs=47.6
Q ss_pred EEEEEEecCChhhhhhh----hhhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
+.+.|+||+|....... ...+ .-..+.+++|.|.... +........+.... + ..-+|.||.|-.. +
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~-r- 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDA-R- 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc-c-
Confidence 56899999995432111 1111 1256788999997643 22222222333221 1 2355669999532 1
Q ss_pred cCHHHHHHHHHhcCCeEEEeec
Q 030856 132 VSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S~ 153 (170)
.-.+...+...++|+..++.
T Consensus 256 --gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 --GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 23366677777887766654
No 417
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.11 E-value=5.8e-05 Score=56.98 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=70.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC--C-ccceeeeeee---------------EEEE-Ee-----------CCeEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDN--T-YQATIGIDFL---------------SKTM-YL-----------EDRTVR 59 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~--~-~~~~~~~~~~---------------~~~~-~~-----------~~~~~~ 59 (170)
--++++|+.|+||||++.+|....... . .......+.+ .... .. .-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 458999999999999999988532110 0 0001111110 0000 00 001235
Q ss_pred EEEEecCChhhhhhh---hhhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC
Q 030856 60 LQLWDTAGQERFRSL---IPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~ 133 (170)
..++||+|....... ....+.. ..-.++|+|.+.. ...+........ ....--+|+||.|.. ..
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~----~~~~~g~IlTKlDet----~~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYR----GPGLAGCILTKLDEA----AS 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhc----cCCCCEEEEeCCCCc----cc
Confidence 789999994432211 1111221 1236778887632 222222222221 122345567999953 23
Q ss_pred HHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 134 IEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
...+...+...++++..++ +|++|
T Consensus 407 ~G~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred chHHHHHHHHHCCCeEEEe--cCCCC
Confidence 4566777888888777664 45555
No 418
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=2.6e-05 Score=57.17 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=70.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC---------CCCccc------------eeeeeeeEEEE--E----e---C-CeE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQA------------TIGIDFLSKTM--Y----L---E-DRT 57 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~---------~~~~~~------------~~~~~~~~~~~--~----~---~-~~~ 57 (170)
+..|+++|++|+||||++.+|..... ..+..+ ..+..+..... . + . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 46899999999999999999864211 000000 00111110000 0 0 0 012
Q ss_pred EEEEEEecCChhhhhh----hhhhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 58 VRLQLWDTAGQERFRS----LIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
+.+.|+||+|...... .....+. ..+.+++|.|++-. ...+...+..+.. --+--+++||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~----~~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC----CCCCEEEEEcccCCC---
Confidence 5789999999643221 1222222 35678888887522 2232333333322 122345569999643
Q ss_pred cCHHHHHHHHHhcCCeEEEee
Q 030856 132 VSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S 152 (170)
..-.+...+...++|+..++
T Consensus 392 -k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 34556667777788766664
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.08 E-value=7.8e-05 Score=55.75 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=49.5
Q ss_pred EEEEEEecCChhhhh----hhhhhhhc---CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 58 VRLQLWDTAGQERFR----SLIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
+.+.++||+|..... .....++. ...-..+|++++-. ...+...+..+.. -+ +--++.||.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---~~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---LP-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---CC-CCEEEEecccccc--
Confidence 578999999964332 12233333 23466777887632 2233332222221 11 1246679999632
Q ss_pred ccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
....+...+...++++..++ +|.++
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 23457777888888777664 34443
No 420
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.07 E-value=1.1e-05 Score=56.75 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=38.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC------CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
..++++.++|.||+|||||+|++...... ....|..+..+..... +... -.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~ir-i~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIR-ISHR-PPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheE-eccC-CceEEecCCCc
Confidence 45789999999999999999988753221 2223334433333222 2222 24789999993
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=98.06 E-value=6.4e-05 Score=44.96 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=50.0
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 12 i~i~G-~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
|++.| ..|+||||+...+........ .+..- .. .+ ..+.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl~-----~d--~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVLL-----ID--LD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEEE-----Ee--CC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56776 669999999776654322111 11111 11 11 1167899999986532 23366778999999998
Q ss_pred CCChhhHHhHHHHHH
Q 030856 91 VASRQSFLNTSKWID 105 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~ 105 (170)
.+ ..++.....+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 456666665555
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=9.8e-05 Score=54.01 Aligned_cols=136 Identities=15% Similarity=0.201 Sum_probs=70.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC---------CCCccce------------eeeeeeEEEE--Ee-------C-Ce
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQAT------------IGIDFLSKTM--YL-------E-DR 56 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~---------~~~~~~~------------~~~~~~~~~~--~~-------~-~~ 56 (170)
+.-.++++|+.|+||||++.++..... ..+..+. .+..+..... .. . ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 345689999999999999988774211 0010000 1111110000 00 0 02
Q ss_pred EEEEEEEecCChhhhhh----hhhhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 57 TVRLQLWDTAGQERFRS----LIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
.+.+.++||+|...... ....+.. ..+.+++|.+.+. ....+...+... ..--+--+|.||.|..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f----~~l~i~glI~TKLDET--- 355 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL----AEIPIDGFIITKMDET--- 355 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc----CcCCCCEEEEEcccCC---
Confidence 35789999999743322 1222222 3466677776542 223333322221 1112335567999963
Q ss_pred ccCHHHHHHHHHhcCCeEEEeec
Q 030856 131 QVSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S~ 153 (170)
...-.+...+...++|+..+|.
T Consensus 356 -~~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 356 -TRIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred -CCccHHHHHHHHHCCCEEEEec
Confidence 2345667778888887766653
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.00 E-value=0.00011 Score=42.97 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=54.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-hhhhhcCCcEEEEEEe
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYD 90 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 90 (170)
+++.|.+|+||||+...+...-.... .+..- .+ .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~---------~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLL---------ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEE---------EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999888775432111 11111 11 6889999986532221 1455668899999998
Q ss_pred CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEe
Q 030856 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGN 122 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~n 122 (170)
... .++.............. ....+..++.|
T Consensus 68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 68 PEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred Cch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 764 33334333322222222 23445555544
No 424
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=4.9e-05 Score=56.98 Aligned_cols=126 Identities=22% Similarity=0.222 Sum_probs=77.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC------------CCC--ccceeeeeeeEEEEE----------------eCCeE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF------------DNT--YQATIGIDFLSKTMY----------------LEDRT 57 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~------------~~~--~~~~~~~~~~~~~~~----------------~~~~~ 57 (170)
+-.++.++.....|||||-..|..+.. .+. .....+++.....+. .++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 446778899999999999998874311 100 001111111111111 13446
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CCcccCHHH
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-EKRQVSIEE 136 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~-~~~~~~~~~ 136 (170)
+-+.++|.||+-++++.....++-.|+.+.|+|+.+.--.+.-... ++..++.+.-++++||.|.. -+-++..++
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVL----rQA~~ERIkPvlv~NK~DRAlLELq~~~Ee 173 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL----RQAIAERIKPVLVMNKMDRALLELQLSQEE 173 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHH----HHHHHhhccceEEeehhhHHHHhhcCCHHH
Confidence 7899999999999999999999999999999998764322222222 22223345556778999964 123444444
Q ss_pred H
Q 030856 137 G 137 (170)
Q Consensus 137 ~ 137 (170)
.
T Consensus 174 L 174 (842)
T KOG0469|consen 174 L 174 (842)
T ss_pred H
Confidence 3
No 425
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.99 E-value=5e-05 Score=50.68 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=57.7
Q ss_pred EEEEEecCChhhhhh-------hhhhhhcC--C-cEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 59 RLQLWDTAGQERFRS-------LIPSYIRD--S-SVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~-------~~~~~~~~--~-d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
...++|.||+-+... ..++ ++. - =.++++.+..= -++...+...+..+.....-.+|-+=|++|+|+.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~h-l~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEH-LKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHH-HhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 467899999765322 1111 121 1 13445555321 1222333333444444334578888888999986
Q ss_pred CCcc--------------------cC---------HHHHHHHHHhcCC-eEEEeecCCCCChHHHHHHHHh
Q 030856 128 EKRQ--------------------VS---------IEEGEAKSRELNV-MFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 128 ~~~~--------------------~~---------~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
..+. .. ......+...++. .|++..+.+.++++.++..|-.
T Consensus 178 k~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ 248 (273)
T KOG1534|consen 178 KDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDD 248 (273)
T ss_pred hhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHH
Confidence 4310 00 0111122223444 7888888888888888877643
No 426
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.99 E-value=8.1e-06 Score=43.76 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
..+|.|+.|+|||||++++..--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987543
No 427
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.00013 Score=54.07 Aligned_cols=134 Identities=20% Similarity=0.201 Sum_probs=68.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-C-C--------Cccc------------eeeeeeeEEE------EEeCCeEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKF-D-N--------TYQA------------TIGIDFLSKT------MYLEDRTVRL 60 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~-~-~--------~~~~------------~~~~~~~~~~------~~~~~~~~~~ 60 (170)
..-++++|++|+||||++.+|..... . . +..+ ..+....... .......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 45688999999999999998874210 0 0 0000 0111111000 0001124578
Q ss_pred EEEecCChhhhhh----hhhhhhc-----CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 61 QLWDTAGQERFRS----LIPSYIR-----DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 61 ~i~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
.++||+|...... ....++. ...-.++|.|++.. .+.+........ . --+--+|.||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~-~---~~~~glIlTKLDEt~--- 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYE-S---LNYRRILLTKLDEAD--- 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhc-C---CCCCEEEEEcccCCC---
Confidence 9999999643211 1222222 13467888888743 222222222221 1 122345569999632
Q ss_pred cCHHHHHHHHHhcCCeEEEee
Q 030856 132 VSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S 152 (170)
..-.+...+...+.|+..++
T Consensus 374 -~~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 374 -FLGSFLELADTYSKSFTYLS 393 (432)
T ss_pred -CccHHHHHHHHHCCCEEEEe
Confidence 23446667777788766664
No 428
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.97 E-value=7.3e-06 Score=59.29 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=40.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
.+.++++|+|-|++||||+||+|...... ....|+.+...+... .+. .+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~--Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK--LDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee--ccC---CceeccCCce
Confidence 56799999999999999999999987763 333444443222222 222 5788999993
No 429
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.97 E-value=0.00013 Score=45.91 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
...+.+.|++|+|||++++.+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45789999999999999999986643
No 430
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00031 Score=51.87 Aligned_cols=140 Identities=13% Similarity=0.091 Sum_probs=73.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-----CCccce--------------------eeeeeeEEEEE-------eCC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-----NTYQAT--------------------IGIDFLSKTMY-------LED 55 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-----~~~~~~--------------------~~~~~~~~~~~-------~~~ 55 (170)
.+-.|+++|++|+||||.+.++...... ...... .+..+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3467899999999999999887642110 000000 11111110000 001
Q ss_pred eEEEEEEEecCChhhhhh----hhhhhhcCC--c-EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 56 RTVRLQLWDTAGQERFRS----LIPSYIRDS--S-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
..+.+.++||+|...... ....++... + -.++|.|++.. ...+...+.... . --+-=+++||.|...
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~---~-~~~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS---P-FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc---C-CCCCEEEEEeccCCC
Confidence 235789999999554221 122233322 3 57889998753 233333322221 1 112345569999532
Q ss_pred CcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
..-.+...+...+.|+..++ +|+++
T Consensus 327 ----~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ----CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ----cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 33556666777777766553 44555
No 431
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.95 E-value=8.8e-06 Score=50.07 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 432
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.91 E-value=8.5e-06 Score=59.09 Aligned_cols=85 Identities=21% Similarity=0.131 Sum_probs=52.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC-ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh--hhhhhhhcC
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--SLIPSYIRD 81 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~ 81 (170)
.+.+.+.|+++|.|++||||+||.|...+.... ..+..+ ..++. ---..++.++|+||.-... +.....+
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET---KVWQY--ItLmkrIfLIDcPGvVyps~dset~ivL-- 375 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET---KVWQY--ITLMKRIFLIDCPGVVYPSSDSETDIVL-- 375 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc---hHHHH--HHHHhceeEecCCCccCCCCCchHHHHh--
Confidence 356789999999999999999999998876532 222211 11111 0012368899999954322 2222232
Q ss_pred CcEEEEEEeCCChhhH
Q 030856 82 SSVAVVVYDVASRQSF 97 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~ 97 (170)
-+++-|=.+.+|+.+
T Consensus 376 -kGvVRVenv~~pe~y 390 (572)
T KOG2423|consen 376 -KGVVRVENVKNPEDY 390 (572)
T ss_pred -hceeeeeecCCHHHH
Confidence 356667777776543
No 433
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=5.2e-05 Score=54.98 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=51.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc---------------------eeeeeeeEEEEE-------------e
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA---------------------TIGIDFLSKTMY-------------L 53 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~-------------~ 53 (170)
++--|.++|-.|+||||.+-++........+.+ ...+.++..... .
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 445678999999999999887764211111000 011112211110 1
Q ss_pred CCeEEEEEEEecCChhhhhhhhhhh------hcCCcEEEEEEeCCChhhHHh
Q 030856 54 EDRTVRLQLWDTAGQERFRSLIPSY------IRDSSVAVVVYDVASRQSFLN 99 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~~~~~ 99 (170)
....+.+.|.||+|........-.. .-+.|-+|||.|++-...-+.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 2345789999999965432221111 235799999999886544333
No 434
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.90 E-value=0.00033 Score=46.17 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
=.++++|+.|+|||||++.+.+-..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4689999999999999999887643
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.89 E-value=1.1e-05 Score=52.85 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+|+|+|++|+|||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 436
>PRK08118 topology modulation protein; Reviewed
Probab=97.89 E-value=1.2e-05 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988854
No 437
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.85 E-value=0.0001 Score=46.09 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.--|++.|+.|+|||||++.+...-
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999998764
No 438
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.85 E-value=1.5e-05 Score=52.56 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
++|+|+|+||+||||+.++|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 439
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.85 E-value=0.00016 Score=43.55 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=59.8
Q ss_pred EEEE-cCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 12 LVFL-GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 12 i~i~-G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
|+++ +..|+||||+.-.+...-.......+. ........ ...+.+.|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~-----l~d~d~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVL-----LVDLDLQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEE-----EEECCCCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence 3444 567899999866655332211011111 11111111 11689999998653 234456788999999988
Q ss_pred CCChhhHHhHHHHHHHHHHhcCC-CCeEEEEEeC
Q 030856 91 VASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNK 123 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vvv~nK 123 (170)
.+ ..++..+..+++.+.....+ ...+.+|+|+
T Consensus 74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 65 45677777777776655433 4556677775
No 440
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.84 E-value=0.0002 Score=50.61 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=61.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----------------
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------------- 69 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------------- 69 (170)
..+-.+++++|++|.|||++++++.....+.. .+. ...+++...++|...
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-------------AERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34457799999999999999999997654321 111 011234444444311
Q ss_pred --------hhhhhhhhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030856 70 --------RFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (170)
Q Consensus 70 --------~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~ 124 (170)
.........++....=++++|=-+. -+....+..++.++.... -.+|+|.||++-
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 1223344567778888888884321 223334444444444332 478999998753
No 441
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.83 E-value=0.00042 Score=50.46 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 467799999999999999854
No 442
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.83 E-value=1.6e-05 Score=50.34 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
|+++|+|||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998843
No 443
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.81 E-value=0.00025 Score=49.81 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=71.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC---------C-C-----------ccceeeeeeeEEEEE---------e-CCeE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFD---------N-T-----------YQATIGIDFLSKTMY---------L-EDRT 57 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~---------~-~-----------~~~~~~~~~~~~~~~---------~-~~~~ 57 (170)
.-+++++|++|+||||++..+...... . . +....+..+...... . ....
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 368999999999999998877543110 0 0 000011111110000 0 0123
Q ss_pred EEEEEEecCChhhhhh----hhhhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 58 VRLQLWDTAGQERFRS----LIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
+.+.++||+|...... ....++ ...+-+++|.|++.. .+....++..+.. -.+--++.||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCC---
Confidence 5789999999653221 112222 245678899997632 2233333333322 122355669999643
Q ss_pred cCHHHHHHHHHhcCCeEEEee
Q 030856 132 VSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S 152 (170)
..-.+...+...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23456667777788776664
No 444
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.80 E-value=1.3e-05 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 445
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.80 E-value=1.9e-05 Score=53.63 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-++|+|++|||||||+|-+-+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 478999999999999998775443
No 446
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=3.7e-06 Score=57.58 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=82.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC-eEEEEEEEecCChhhhhhhhhhhhc----
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIR---- 80 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~---- 80 (170)
...+..|++.|..+. |++|++.+.+.-.. ..++...++......-.+ ..--..+|+.+|......+...-+.
T Consensus 42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGGK--TTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCCce--eEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 345677888887665 89999988765432 245555555544443333 2223589999996654443332222
Q ss_pred CCcEEEEEEeCCChhh-HHhHHHHHHHHHHh------------------------------------c-CCCCeEEEEEe
Q 030856 81 DSSVAVVVYDVASRQS-FLNTSKWIDEVRTE------------------------------------R-GSDVIIVLVGN 122 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~------------------------------------~-~~~~~~vvv~n 122 (170)
..=.+|++.|+++++. |-.+...++.++++ + .-.+|+++|+.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 1236788999998754 22222222111100 0 11578999999
Q ss_pred CCCCCCCcc-----cCHHHHHHHHHhcCCeEEEeecC
Q 030856 123 KTDLVEKRQ-----VSIEEGEAKSRELNVMFIETSAK 154 (170)
Q Consensus 123 K~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~S~~ 154 (170)
|.|.....+ -...-.+..|..+|...+-.|++
T Consensus 199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSsk 235 (363)
T KOG3929|consen 199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSK 235 (363)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 999765322 22333445555666655555554
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.79 E-value=2.5e-05 Score=43.19 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030856 12 LVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~ 33 (170)
|++.|++|+||||+.+.+...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999988653
No 448
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.76 E-value=3.4e-05 Score=52.19 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=22.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+.+..-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999999999998753
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.76 E-value=3.3e-05 Score=52.81 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~ 34 (170)
|+++|++|+|||||++-+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999887443
No 450
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.75 E-value=2.5e-05 Score=52.32 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++|+||+|||||||++.+-+-..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 578999999999999998875443
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.75 E-value=0.00026 Score=47.59 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~ 34 (170)
|+|+|++||||||+++.+.....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999876543
No 452
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.73 E-value=0.00034 Score=50.86 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.+.+|+|+|++|||||||++++...-.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 357899999999999999999987543
No 453
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.73 E-value=3.3e-05 Score=48.57 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
=.++|+|+.|+|||||++.+.+..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 368999999999999999988764
No 454
>PRK10646 ADP-binding protein; Provisional
Probab=97.72 E-value=0.00038 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-|++.|+-|+|||||.+.+...--
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999987543
No 455
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.72 E-value=4.5e-05 Score=49.87 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
....-++|+|++|||||||++++...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 34457899999999999999999865
No 456
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.70 E-value=0.00033 Score=50.74 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
...+|+|+|++|||||||++++...-.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 367999999999999999999986543
No 457
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.68 E-value=0.00026 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
+.+|+|.|++|||||||+++|...-
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998753
No 458
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.67 E-value=0.0002 Score=48.63 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=17.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 030856 10 YKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~ 30 (170)
+--+++|||||||||..+...
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 346899999999999977544
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.65 E-value=5.3e-05 Score=47.31 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~ 35 (170)
-.++++|++|+|||+++..+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999876554
No 460
>PRK14530 adenylate kinase; Provisional
Probab=97.65 E-value=5.1e-05 Score=51.60 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
No 461
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.64 E-value=4.6e-05 Score=47.20 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998855
No 462
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.63 E-value=6.9e-05 Score=49.09 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
=.++|+|++|+|||||+|-+.+-..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 4689999999999999998876444
No 463
>PRK06217 hypothetical protein; Validated
Probab=97.63 E-value=5.5e-05 Score=50.15 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 464
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.62 E-value=6.8e-05 Score=50.76 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+...|+|.|++|||||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998764
No 465
>PRK03839 putative kinase; Provisional
Probab=97.62 E-value=5.7e-05 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
+|+++|+||+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
No 466
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.62 E-value=0.00015 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
--|++-|+-|+|||||.+.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 457888999999999999988654
No 467
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.61 E-value=5.7e-05 Score=47.66 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
|+|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.61 E-value=6.1e-05 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++|+|++|+|||||++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997653
No 469
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.61 E-value=0.00043 Score=43.82 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
--|++-|+-|+|||||.+.+...-.
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHcC
Confidence 4577889999999999999887644
No 470
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.59 E-value=6.8e-05 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.664 Sum_probs=22.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
...++++++|++|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999988854
No 471
>PRK08233 hypothetical protein; Provisional
Probab=97.59 E-value=7.7e-05 Score=49.19 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999864
No 472
>PRK04195 replication factor C large subunit; Provisional
Probab=97.59 E-value=0.0016 Score=49.76 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=21.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.-.+++.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999997653
No 473
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.59 E-value=0.00066 Score=47.70 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.|+|.|++|+||||+++.+....
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 48999999999999999987654
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.59 E-value=0.00053 Score=45.57 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.-.++++|++|+|||||++.+.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999988654
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.58 E-value=6.1e-05 Score=49.67 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.58 E-value=7e-05 Score=44.90 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 030856 10 YKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~ 30 (170)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999976
No 477
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.57 E-value=0.00037 Score=47.47 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=62.8
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~ 134 (170)
.+.+.|.|+.|... ......+..+|.+|+=.-.+.. +.-.....|+..+.+..++++|.-|+.|++.....+. ..
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~-~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTR-AQ 159 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhH-HH
Confidence 35789999998653 2344556689999987666632 2223335566666666678899999999997431111 11
Q ss_pred HHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 135 EEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 135 ~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
....++.. ++|++.+...+..-..+++.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 12222222 47888877776665555544
No 478
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=7.6e-05 Score=46.39 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030856 12 LVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~ 33 (170)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999988653
No 479
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.55 E-value=8e-05 Score=47.15 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.|+|+|+.|+|||||+..|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998854
No 480
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.55 E-value=0.0001 Score=49.80 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+..-|+|+|++|+|||||+++|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35567888999999999999999754
No 481
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.55 E-value=0.00093 Score=51.27 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=42.8
Q ss_pred cEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCC-eEEEEEeCCCCCCCcc------cCH--HHHHHHHHhcCCeEEE
Q 030856 83 SVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDV-IIVLVGNKTDLVEKRQ------VSI--EEGEAKSRELNVMFIE 150 (170)
Q Consensus 83 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~-~~vvv~nK~D~~~~~~------~~~--~~~~~~~~~~~~~~~~ 150 (170)
--+|+|=|+-+ .++ ..+...+...... ... |+|+|++-+|...... ... ....++....++..+.
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~ 209 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIK 209 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEE
Confidence 34566656543 222 3444444433332 234 9999999665322111 011 1123444556677777
Q ss_pred eecCCCCChHHHHHHHHh
Q 030856 151 TSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~ 168 (170)
..+.....+...+..|++
T Consensus 210 FNpIa~T~mkKaL~rI~~ 227 (519)
T PF03215_consen 210 FNPIAPTFMKKALKRILK 227 (519)
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 777766666666666553
No 482
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.54 E-value=0.0055 Score=40.16 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=50.6
Q ss_pred EEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH
Q 030856 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE 138 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~ 138 (170)
.+.++|+|+.... .....+..+|.+|++.+.+. .++..+...+..+... ......+|.|+.+..... ..+..+
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence 6899999975432 34455688999999998763 4555555555555442 223567888999853221 122234
Q ss_pred HHHHhcCCeEE
Q 030856 139 AKSRELNVMFI 149 (170)
Q Consensus 139 ~~~~~~~~~~~ 149 (170)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44455566544
No 483
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=8.4e-05 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-.-+++.||+|+|||||+++|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3557889999999999999999776
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.54 E-value=8e-05 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
-|+++|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999875
No 485
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.54 E-value=0.00094 Score=43.42 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
=.++++|+.|+|||||++.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678999999999999999987643
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.53 E-value=7.5e-05 Score=50.11 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
|+|.|++|||||||.+.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 487
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.53 E-value=7.9e-05 Score=51.66 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
++++|+.|+|||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999998863
No 488
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.52 E-value=8.2e-05 Score=49.35 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
..|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999873
No 489
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.52 E-value=0.00057 Score=49.25 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..-+++|+|++|+|||||++++...
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999865
No 490
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.51 E-value=9.7e-05 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.-.++++|+.|+|||||++.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35789999999999999998863
No 491
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.51 E-value=0.00068 Score=48.48 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+-+++|+|++|+||||+++++...
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 492
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.50 E-value=0.00013 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
...++|+++|+|||||||+...+...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988753
No 493
>PRK14532 adenylate kinase; Provisional
Probab=97.49 E-value=0.0001 Score=49.00 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
++|+++|+|||||||+..++...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 494
>PRK14531 adenylate kinase; Provisional
Probab=97.49 E-value=0.00011 Score=48.69 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+|+++|+|||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 495
>PRK00625 shikimate kinase; Provisional
Probab=97.49 E-value=0.00011 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
++|+++|.+||||||+.+.+...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988643
No 496
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.48 E-value=0.0004 Score=47.26 Aligned_cols=45 Identities=31% Similarity=0.352 Sum_probs=30.9
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~ 126 (170)
.+++|.+|.|.|.+. +++....+ +.++....+ =.++.+|+||.|-
T Consensus 153 ~~~vD~vivVvDpS~-~sl~taer-i~~L~~elg-~k~i~~V~NKv~e 197 (255)
T COG3640 153 IEGVDLVIVVVDPSY-KSLRTAER-IKELAEELG-IKRIFVVLNKVDE 197 (255)
T ss_pred ccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHhC-CceEEEEEeeccc
Confidence 568999999999874 34444333 344444442 3789999999995
No 497
>PRK01889 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00018 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-+++++|.+|+|||||+|.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999997543
No 498
>PRK13949 shikimate kinase; Provisional
Probab=97.48 E-value=0.00011 Score=48.10 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
+|+++|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987753
No 499
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.48 E-value=0.00011 Score=46.40 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988754
No 500
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00011 Score=50.03 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999886
Done!