Query 030856
Match_columns 170
No_of_seqs 151 out of 1673
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 08:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 6.2E-45 2.1E-49 245.3 20.7 165 6-170 10-174 (216)
2 1r2q_A RAS-related protein RAB 100.0 1.5E-38 5E-43 207.0 21.9 165 6-170 3-167 (170)
3 2ew1_A RAS-related protein RAB 100.0 8.3E-39 2.8E-43 213.9 21.2 163 7-169 24-186 (201)
4 2a5j_A RAS-related protein RAB 100.0 1.1E-38 3.8E-43 211.7 21.5 166 4-169 16-181 (191)
5 2hup_A RAS-related protein RAB 100.0 6.5E-39 2.2E-43 214.5 20.3 164 6-169 26-190 (201)
6 1z0f_A RAB14, member RAS oncog 100.0 1.5E-38 5.2E-43 208.6 21.7 166 4-169 10-175 (179)
7 2efe_B Small GTP-binding prote 100.0 2.9E-38 1E-42 207.7 23.1 166 5-170 8-173 (181)
8 1ek0_A Protein (GTP-binding pr 100.0 3.6E-38 1.2E-42 205.1 22.3 163 8-170 2-167 (170)
9 3tkl_A RAS-related protein RAB 100.0 4.1E-38 1.4E-42 209.5 22.9 163 7-169 14-176 (196)
10 2bme_A RAB4A, RAS-related prot 100.0 2.5E-38 8.4E-43 209.0 21.6 164 6-169 7-170 (186)
11 2fu5_C RAS-related protein RAB 100.0 3.7E-39 1.3E-43 212.5 17.6 164 6-169 5-168 (183)
12 1z0j_A RAB-22, RAS-related pro 100.0 5.8E-38 2E-42 204.2 22.7 164 7-170 4-167 (170)
13 2gf9_A RAS-related protein RAB 100.0 3.2E-38 1.1E-42 209.1 21.8 165 5-169 18-182 (189)
14 2bcg_Y Protein YP2, GTP-bindin 100.0 2.7E-38 9.4E-43 212.1 21.5 168 1-169 1-168 (206)
15 2fg5_A RAB-22B, RAS-related pr 100.0 3.3E-38 1.1E-42 209.6 21.3 165 6-170 20-184 (192)
16 2y8e_A RAB-protein 6, GH09086P 100.0 4.8E-38 1.6E-42 206.2 21.6 165 6-170 11-175 (179)
17 1z08_A RAS-related protein RAB 100.0 1.1E-38 3.9E-43 207.7 18.1 163 7-169 4-166 (170)
18 3kkq_A RAS-related protein M-R 100.0 7.5E-38 2.6E-42 206.2 21.4 164 5-169 14-179 (183)
19 2il1_A RAB12; G-protein, GDP, 100.0 2.9E-38 9.9E-43 209.9 19.5 166 4-169 21-187 (192)
20 3bc1_A RAS-related protein RAB 100.0 8.7E-38 3E-42 207.5 21.2 169 1-169 3-182 (195)
21 2oil_A CATX-8, RAS-related pro 100.0 8.7E-38 3E-42 207.6 21.2 164 6-169 22-185 (193)
22 1z06_A RAS-related protein RAB 100.0 9.6E-38 3.3E-42 206.8 21.0 165 6-170 17-186 (189)
23 3tw8_B RAS-related protein RAB 100.0 9.7E-38 3.3E-42 205.1 20.8 163 6-169 6-168 (181)
24 3t5g_A GTP-binding protein RHE 100.0 3.4E-38 1.2E-42 207.6 18.6 164 5-169 2-166 (181)
25 1zbd_A Rabphilin-3A; G protein 100.0 1.7E-37 5.8E-42 207.7 22.3 163 7-169 6-168 (203)
26 2o52_A RAS-related protein RAB 100.0 5.2E-38 1.8E-42 209.9 19.6 163 7-169 23-185 (200)
27 2g6b_A RAS-related protein RAB 100.0 1.4E-37 4.7E-42 204.4 21.2 164 6-169 7-171 (180)
28 3dz8_A RAS-related protein RAB 100.0 9.8E-39 3.4E-43 212.0 15.5 163 7-169 21-183 (191)
29 1g16_A RAS-related protein SEC 100.0 7.5E-38 2.6E-42 203.7 19.4 161 8-169 2-162 (170)
30 3cbq_A GTP-binding protein REM 100.0 5.1E-38 1.7E-42 209.2 18.9 166 4-169 18-185 (195)
31 1z2a_A RAS-related protein RAB 100.0 9.5E-38 3.2E-42 202.9 19.5 162 7-169 3-164 (168)
32 2p5s_A RAS and EF-hand domain 100.0 6E-38 2.1E-42 209.4 18.7 165 5-169 24-194 (199)
33 2fn4_A P23, RAS-related protei 100.0 1.6E-37 5.3E-42 204.1 20.3 164 5-169 5-169 (181)
34 2hxs_A RAB-26, RAS-related pro 100.0 5.6E-38 1.9E-42 205.9 17.6 164 6-169 3-170 (178)
35 3c5c_A RAS-like protein 12; GD 100.0 8.1E-38 2.8E-42 207.0 18.3 164 4-169 16-183 (187)
36 3cpj_B GTP-binding protein YPT 100.0 1.5E-37 5.2E-42 210.9 19.3 163 7-169 11-173 (223)
37 1c1y_A RAS-related protein RAP 100.0 3.3E-37 1.1E-41 200.1 19.7 161 8-169 2-164 (167)
38 1wms_A RAB-9, RAB9, RAS-relate 100.0 8.1E-37 2.8E-41 200.2 21.7 163 6-169 4-171 (177)
39 3q85_A GTP-binding protein REM 100.0 2.8E-37 9.7E-42 200.9 18.9 161 9-169 2-164 (169)
40 2atx_A Small GTP binding prote 100.0 3.9E-37 1.3E-41 204.6 19.5 167 1-169 10-190 (194)
41 3q3j_B RHO-related GTP-binding 100.0 2.7E-37 9.3E-42 208.4 18.7 164 4-169 22-200 (214)
42 2atv_A RERG, RAS-like estrogen 100.0 4.6E-37 1.6E-41 204.7 19.6 166 2-169 21-188 (196)
43 1u8z_A RAS-related protein RAL 100.0 7.1E-37 2.4E-41 198.6 20.0 162 7-169 2-164 (168)
44 3clv_A RAB5 protein, putative; 100.0 1.6E-36 5.6E-41 202.9 22.0 163 4-169 2-201 (208)
45 3oes_A GTPase rhebl1; small GT 100.0 1.1E-37 3.7E-42 208.5 16.1 165 4-169 19-184 (201)
46 2f7s_A C25KG, RAS-related prot 100.0 3.1E-37 1.1E-41 208.5 18.4 164 6-169 22-196 (217)
47 1x3s_A RAS-related protein RAB 100.0 1.4E-36 4.7E-41 201.9 21.0 162 7-169 13-175 (195)
48 3ihw_A Centg3; RAS, centaurin, 100.0 9.8E-37 3.3E-41 201.3 20.0 159 4-169 15-177 (184)
49 3reg_A RHO-like small GTPase; 100.0 1.4E-36 4.6E-41 202.1 20.7 162 6-169 20-185 (194)
50 3cph_A RAS-related protein SEC 100.0 1.6E-36 5.4E-41 204.3 21.2 162 7-169 18-179 (213)
51 1kao_A RAP2A; GTP-binding prot 100.0 5.7E-37 1.9E-41 198.8 18.1 161 8-169 2-163 (167)
52 2bov_A RAla, RAS-related prote 100.0 2.4E-36 8E-41 202.4 21.0 164 5-169 10-174 (206)
53 2nzj_A GTP-binding protein REM 100.0 1.6E-36 5.4E-41 198.4 19.5 162 7-169 2-166 (175)
54 1vg8_A RAS-related protein RAB 100.0 1.6E-36 5.5E-41 203.4 19.9 167 1-169 1-172 (207)
55 2a9k_A RAS-related protein RAL 100.0 2E-36 6.7E-41 199.8 20.0 164 5-169 14-178 (187)
56 1ky3_A GTP-binding protein YPT 100.0 6.7E-37 2.3E-41 201.2 17.4 168 1-169 1-175 (182)
57 3q72_A GTP-binding protein RAD 100.0 1.6E-36 5.5E-41 196.9 18.8 160 8-169 1-161 (166)
58 2iwr_A Centaurin gamma 1; ANK 100.0 2.5E-36 8.6E-41 198.1 19.6 159 4-169 2-166 (178)
59 2yc2_C IFT27, small RAB-relate 100.0 2.2E-37 7.6E-42 207.7 14.3 163 7-169 18-189 (208)
60 2g3y_A GTP-binding protein GEM 100.0 2.3E-36 7.9E-41 203.0 19.0 164 6-169 34-200 (211)
61 2erx_A GTP-binding protein DI- 100.0 5.6E-36 1.9E-40 195.1 19.9 162 8-170 2-165 (172)
62 4dsu_A GTPase KRAS, isoform 2B 100.0 1.1E-35 3.7E-40 196.6 20.8 161 7-169 2-163 (189)
63 1m7b_A RND3/RHOE small GTP-bin 100.0 3.5E-36 1.2E-40 198.6 18.1 162 6-169 4-180 (184)
64 2j0v_A RAC-like GTP-binding pr 100.0 1.6E-36 5.5E-41 204.3 16.5 165 3-169 3-177 (212)
65 1mh1_A RAC1; GTP-binding, GTPa 100.0 7.5E-36 2.6E-40 196.9 19.2 161 7-169 3-177 (186)
66 2q3h_A RAS homolog gene family 100.0 8.1E-36 2.8E-40 199.3 19.5 163 5-169 16-192 (201)
67 1gwn_A RHO-related GTP-binding 100.0 3.8E-36 1.3E-40 201.5 17.9 162 6-169 25-201 (205)
68 4djt_A GTP-binding nuclear pro 100.0 2.4E-36 8.1E-41 204.3 17.0 164 6-169 8-172 (218)
69 3con_A GTPase NRAS; structural 100.0 1.8E-35 6.3E-40 195.9 20.6 164 4-169 16-180 (190)
70 3l0i_B RAS-related protein RAB 100.0 1.3E-38 4.3E-43 212.7 5.0 164 7-170 31-194 (199)
71 4gzl_A RAS-related C3 botulinu 100.0 1.2E-35 4.2E-40 199.0 18.6 163 6-170 27-203 (204)
72 2gco_A H9, RHO-related GTP-bin 100.0 2.8E-35 9.5E-40 196.8 19.9 161 7-169 23-197 (201)
73 2ce2_X GTPase HRAS; signaling 100.0 5.6E-35 1.9E-39 189.2 20.6 160 8-169 2-162 (166)
74 2j1l_A RHO-related GTP-binding 100.0 1.1E-35 3.9E-40 200.5 18.0 161 7-169 32-206 (214)
75 3bwd_D RAC-like GTP-binding pr 100.0 1.5E-36 5E-41 199.8 12.7 164 4-169 3-178 (182)
76 2fv8_A H6, RHO-related GTP-bin 100.0 4.2E-35 1.4E-39 196.8 19.5 161 7-169 23-197 (207)
77 3gj0_A GTP-binding nuclear pro 100.0 3.9E-36 1.3E-40 203.6 14.6 164 3-169 9-172 (221)
78 2gf0_A GTP-binding protein DI- 100.0 9.2E-35 3.1E-39 193.7 20.5 163 6-170 5-169 (199)
79 3t1o_A Gliding protein MGLA; G 100.0 5.5E-36 1.9E-40 199.3 13.7 161 5-169 10-189 (198)
80 2cjw_A GTP-binding protein GEM 100.0 7.1E-35 2.4E-39 193.6 18.6 162 7-169 4-169 (192)
81 4bas_A ADP-ribosylation factor 100.0 6.1E-35 2.1E-39 194.6 14.9 162 4-169 12-186 (199)
82 1f6b_A SAR1; gtpases, N-termin 100.0 5.7E-34 2E-38 190.0 17.4 157 7-170 23-197 (198)
83 2f9l_A RAB11B, member RAS onco 100.0 4.1E-33 1.4E-37 186.0 21.5 162 8-169 4-165 (199)
84 1m2o_B GTP-binding protein SAR 100.0 1.4E-33 4.7E-38 187.1 19.0 157 7-170 21-190 (190)
85 1zd9_A ADP-ribosylation factor 100.0 1.2E-34 4.1E-39 191.8 13.3 159 6-170 19-183 (188)
86 2h57_A ADP-ribosylation factor 100.0 2.2E-33 7.7E-38 185.9 18.8 159 6-170 18-185 (190)
87 1oix_A RAS-related protein RAB 100.0 5.7E-33 2E-37 184.2 20.8 163 7-169 27-189 (191)
88 1r8s_A ADP-ribosylation factor 100.0 1.5E-34 5.3E-39 187.1 12.1 154 10-170 1-160 (164)
89 2b6h_A ADP-ribosylation factor 100.0 2E-34 6.8E-39 191.4 12.6 158 6-170 26-189 (192)
90 1upt_A ARL1, ADP-ribosylation 100.0 6.2E-34 2.1E-38 185.4 14.5 156 7-169 5-166 (171)
91 1ksh_A ARF-like protein 2; sma 100.0 4.4E-33 1.5E-37 183.9 18.0 156 7-169 16-177 (186)
92 2h17_A ADP-ribosylation factor 100.0 1.3E-33 4.3E-38 185.8 15.3 159 5-170 17-181 (181)
93 2zej_A Dardarin, leucine-rich 100.0 3.9E-34 1.3E-38 188.8 11.7 160 9-169 2-175 (184)
94 3llu_A RAS-related GTP-binding 100.0 9.9E-34 3.4E-38 188.6 13.6 162 4-170 15-195 (196)
95 1zj6_A ADP-ribosylation factor 100.0 4.8E-33 1.6E-37 183.9 16.4 156 7-169 14-175 (187)
96 1fzq_A ADP-ribosylation factor 100.0 3.1E-33 1E-37 184.1 15.1 157 7-170 14-176 (181)
97 2wkq_A NPH1-1, RAS-related C3 100.0 2.4E-32 8.1E-37 195.1 19.6 160 8-169 154-327 (332)
98 3th5_A RAS-related C3 botulinu 100.0 1.1E-35 3.6E-40 199.2 0.0 162 7-170 28-203 (204)
99 2x77_A ADP-ribosylation factor 100.0 8.5E-34 2.9E-38 187.8 9.1 156 7-169 20-181 (189)
100 1moz_A ARL1, ADP-ribosylation 100.0 3.7E-33 1.3E-37 183.7 9.6 156 7-169 16-177 (183)
101 2wji_A Ferrous iron transport 100.0 9.2E-32 3.1E-36 174.5 14.6 154 8-170 2-163 (165)
102 2fh5_B SR-beta, signal recogni 100.0 4.7E-32 1.6E-36 182.7 13.2 162 6-170 4-214 (214)
103 3c5h_A Glucocorticoid receptor 100.0 4.2E-33 1.4E-37 192.4 7.8 164 4-169 14-252 (255)
104 3r7w_A Gtpase1, GTP-binding pr 100.0 7E-31 2.4E-35 185.6 17.0 158 8-169 2-178 (307)
105 2qu8_A Putative nucleolar GTP- 100.0 1.8E-30 6.2E-35 176.6 17.0 160 7-169 27-202 (228)
106 3o47_A ADP-ribosylation factor 100.0 1.1E-31 3.7E-36 191.3 10.3 156 7-169 163-324 (329)
107 1svi_A GTP-binding protein YSX 100.0 7E-31 2.4E-35 174.4 13.4 160 3-169 17-192 (195)
108 3lvq_E ARF-GAP with SH3 domain 100.0 7.9E-31 2.7E-35 196.4 13.5 157 7-170 320-482 (497)
109 3r7w_B Gtpase2, GTP-binding pr 100.0 2.3E-31 7.9E-36 187.0 9.5 153 11-170 1-172 (331)
110 2lkc_A Translation initiation 100.0 2.1E-30 7.2E-35 169.7 12.9 155 6-169 5-168 (178)
111 2wjg_A FEOB, ferrous iron tran 100.0 1.9E-30 6.4E-35 171.5 11.4 155 6-169 4-166 (188)
112 2gj8_A MNME, tRNA modification 100.0 2.3E-30 7.8E-35 169.0 11.1 153 8-170 3-164 (172)
113 3dpu_A RAB family protein; roc 100.0 1.1E-30 3.8E-35 196.9 10.9 161 5-169 37-205 (535)
114 2dyk_A GTP-binding protein; GT 100.0 7.4E-30 2.5E-34 164.5 12.6 150 10-170 2-160 (161)
115 2cxx_A Probable GTP-binding pr 100.0 4.6E-30 1.6E-34 169.7 10.5 151 10-169 2-181 (190)
116 3iev_A GTP-binding protein ERA 100.0 5.8E-29 2E-33 175.8 15.9 163 4-170 5-180 (308)
117 3a1s_A Iron(II) transport prot 100.0 1.4E-29 4.6E-34 174.9 12.3 154 7-169 3-164 (258)
118 3pqc_A Probable GTP-binding pr 100.0 8.6E-29 2.9E-33 164.2 14.5 158 2-169 16-191 (195)
119 3iby_A Ferrous iron transport 100.0 8.3E-30 2.8E-34 175.7 9.3 150 10-168 2-163 (256)
120 3b1v_A Ferrous iron uptake tra 100.0 1.1E-29 3.6E-34 176.4 9.7 152 8-169 2-161 (272)
121 3i8s_A Ferrous iron transport 100.0 1.1E-29 3.8E-34 176.9 9.1 153 8-169 2-166 (274)
122 1nrj_B SR-beta, signal recogni 100.0 1.3E-29 4.6E-34 171.1 6.8 149 1-158 4-170 (218)
123 4dhe_A Probable GTP-binding pr 100.0 1.1E-28 3.7E-33 167.2 10.2 160 4-169 24-208 (223)
124 3k53_A Ferrous iron transport 100.0 3.2E-28 1.1E-32 169.4 11.2 154 8-169 2-163 (271)
125 1wf3_A GTP-binding protein; GT 100.0 2E-27 6.8E-32 167.3 14.9 158 1-169 1-170 (301)
126 3qq5_A Small GTP-binding prote 99.9 4.9E-28 1.7E-32 176.7 9.3 159 3-170 28-194 (423)
127 3gee_A MNME, tRNA modification 99.9 3.8E-27 1.3E-31 174.5 13.6 155 8-169 232-395 (476)
128 2hjg_A GTP-binding protein ENG 99.9 4.7E-27 1.6E-31 173.3 13.4 157 7-169 173-346 (436)
129 2e87_A Hypothetical protein PH 99.9 3.6E-26 1.2E-30 164.7 16.2 158 7-169 165-333 (357)
130 4dcu_A GTP-binding protein ENG 99.9 1.5E-26 5.3E-31 171.4 14.1 157 7-169 193-366 (456)
131 1xzp_A Probable tRNA modificat 99.9 6.1E-26 2.1E-30 168.2 12.6 150 9-169 243-402 (482)
132 1lnz_A SPO0B-associated GTP-bi 99.9 1.9E-26 6.4E-31 164.5 9.3 154 11-169 160-327 (342)
133 3sjy_A Translation initiation 99.9 1.3E-24 4.6E-29 158.7 18.5 163 4-169 3-189 (403)
134 1s0u_A EIF-2-gamma, translatio 99.9 1E-24 3.4E-29 159.6 17.5 161 3-169 2-195 (408)
135 1wb1_A Translation elongation 99.9 4.6E-25 1.6E-29 164.1 14.4 156 5-169 15-186 (482)
136 1mky_A Probable GTP-binding pr 99.9 4.2E-25 1.4E-29 163.0 14.1 150 10-169 2-163 (439)
137 2ywe_A GTP-binding protein LEP 99.9 2E-24 6.7E-29 163.4 16.8 158 7-170 4-182 (600)
138 3cb4_D GTP-binding protein LEP 99.9 1.2E-24 4.2E-29 164.7 15.6 157 8-170 3-180 (599)
139 3lxx_A GTPase IMAP family memb 99.9 2.8E-25 9.4E-30 152.0 10.8 161 5-169 25-211 (239)
140 3t5d_A Septin-7; GTP-binding p 99.9 2E-25 6.7E-30 155.6 10.2 164 3-170 2-202 (274)
141 1cip_A Protein (guanine nucleo 99.9 4.4E-25 1.5E-29 158.0 11.8 113 57-169 192-341 (353)
142 1ega_A Protein (GTP-binding pr 99.9 1.6E-24 5.5E-29 152.7 14.5 156 7-169 6-172 (301)
143 3geh_A MNME, tRNA modification 99.9 1.1E-25 3.7E-30 166.2 7.4 150 8-169 223-381 (462)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 5.7E-24 1.9E-28 153.1 16.1 158 9-169 178-351 (364)
145 1kk1_A EIF2gamma; initiation o 99.9 3.9E-24 1.3E-28 156.6 15.5 158 6-169 7-197 (410)
146 3ohm_A Guanine nucleotide-bind 99.9 1.1E-24 3.6E-29 154.0 12.0 113 57-169 166-315 (327)
147 2xtp_A GTPase IMAP family memb 99.9 1.1E-24 3.8E-29 150.7 11.8 160 6-169 19-205 (260)
148 3j2k_7 ERF3, eukaryotic polype 99.9 4.3E-24 1.5E-28 157.3 15.5 154 6-164 14-217 (439)
149 3lxw_A GTPase IMAP family memb 99.9 1.5E-24 5.3E-29 148.9 11.5 161 5-169 17-205 (247)
150 2hjg_A GTP-binding protein ENG 99.9 3E-25 1E-29 163.6 7.5 150 9-169 3-162 (436)
151 1mky_A Probable GTP-binding pr 99.9 9.5E-24 3.2E-28 155.8 14.8 157 7-169 178-352 (439)
152 3p26_A Elongation factor 1 alp 99.9 2.3E-24 8E-29 160.7 11.3 152 7-161 31-227 (483)
153 2qag_A Septin-2, protein NEDD5 99.9 3.7E-25 1.3E-29 159.3 5.6 155 8-168 36-229 (361)
154 2ged_A SR-beta, signal recogni 99.9 2.2E-24 7.4E-29 142.9 8.7 118 6-132 45-174 (193)
155 3izy_P Translation initiation 99.9 3.5E-26 1.2E-30 170.9 -0.7 157 8-169 3-165 (537)
156 2xtz_A Guanine nucleotide-bind 99.9 1.1E-23 3.7E-28 150.7 11.6 114 56-169 181-342 (354)
157 1zcb_A G alpha I/13; GTP-bindi 99.9 1.4E-23 4.9E-28 150.6 11.7 113 57-169 200-350 (362)
158 1d2e_A Elongation factor TU (E 99.9 1.3E-23 4.5E-28 153.2 11.7 158 8-169 2-192 (397)
159 4dcu_A GTP-binding protein ENG 99.9 2.5E-24 8.5E-29 159.6 7.9 154 6-169 20-182 (456)
160 1zun_B Sulfate adenylate trans 99.9 4.3E-23 1.5E-27 152.0 14.0 152 6-162 21-214 (434)
161 2c78_A Elongation factor TU-A; 99.9 4.1E-24 1.4E-28 156.3 8.2 160 6-169 8-209 (405)
162 3tr5_A RF-3, peptide chain rel 99.9 2.9E-23 9.9E-28 155.6 12.6 116 7-128 11-148 (528)
163 1jny_A EF-1-alpha, elongation 99.9 8.4E-24 2.9E-28 155.8 9.5 153 6-161 3-202 (435)
164 4fid_A G protein alpha subunit 99.9 1.3E-23 4.4E-28 149.0 9.8 114 56-169 159-325 (340)
165 2elf_A Protein translation elo 99.9 2.2E-23 7.5E-28 150.4 11.1 143 11-169 23-177 (370)
166 1g7s_A Translation initiation 99.9 3.1E-23 1.1E-27 157.1 12.0 156 7-169 3-215 (594)
167 3izq_1 HBS1P, elongation facto 99.9 2.8E-23 9.4E-28 158.2 11.7 154 7-162 165-362 (611)
168 1zo1_I IF2, translation initia 99.9 7.1E-25 2.4E-29 162.7 1.3 156 7-168 2-163 (501)
169 1r5b_A Eukaryotic peptide chai 99.9 4E-24 1.4E-28 158.6 5.3 155 7-163 41-243 (467)
170 2aka_B Dynamin-1; fusion prote 99.9 5.1E-23 1.7E-27 145.0 8.5 159 7-168 24-249 (299)
171 3avx_A Elongation factor TS, e 99.9 1.7E-22 5.9E-27 160.2 12.1 160 6-169 293-483 (1289)
172 1f60_A Elongation factor EEF1A 99.9 4.1E-23 1.4E-27 152.9 7.3 150 7-161 5-201 (458)
173 1pui_A ENGB, probable GTP-bind 99.9 1.1E-21 3.8E-26 131.5 12.7 155 6-169 23-196 (210)
174 3mca_A HBS1, elongation factor 99.9 2.4E-23 8.1E-28 158.1 4.7 159 6-169 174-394 (592)
175 2dy1_A Elongation factor G; tr 99.9 1.7E-21 5.9E-26 149.8 14.0 123 1-127 1-139 (665)
176 3def_A T7I23.11 protein; chlor 99.9 4.1E-21 1.4E-25 132.9 13.9 123 7-132 34-169 (262)
177 2j69_A Bacterial dynamin-like 99.9 1.1E-20 3.9E-25 145.9 13.9 159 8-169 68-322 (695)
178 2qnr_A Septin-2, protein NEDD5 99.9 4.3E-22 1.5E-26 140.2 5.3 157 8-169 17-211 (301)
179 1udx_A The GTP-binding protein 99.8 1.2E-20 4.2E-25 137.4 12.2 154 11-169 159-322 (416)
180 2h5e_A Peptide chain release f 99.8 3.7E-20 1.3E-24 139.0 15.1 118 7-128 11-148 (529)
181 1dar_A EF-G, elongation factor 99.8 1.5E-20 5.1E-25 145.1 13.0 117 6-128 9-143 (691)
182 3t34_A Dynamin-related protein 99.8 1.8E-21 6.1E-26 140.4 7.0 105 59-165 137-254 (360)
183 1jwy_B Dynamin A GTPase domain 99.8 2.8E-20 9.5E-25 131.9 12.1 108 58-168 131-258 (315)
184 1wxq_A GTP-binding protein; st 99.8 1.7E-21 5.9E-26 141.6 5.9 85 10-94 1-114 (397)
185 1h65_A Chloroplast outer envel 99.8 1E-19 3.6E-24 126.4 13.7 122 7-131 37-171 (270)
186 2qag_C Septin-7; cell cycle, c 99.8 1.4E-20 4.7E-25 137.3 9.2 157 8-169 30-224 (418)
187 2rdo_7 EF-G, elongation factor 99.8 5.8E-19 2E-23 136.5 18.6 120 5-128 6-148 (704)
188 1u0l_A Probable GTPase ENGC; p 99.8 2E-21 6.8E-26 136.9 4.5 134 24-168 32-169 (301)
189 2xex_A Elongation factor G; GT 99.8 5.7E-19 1.9E-23 136.4 17.0 118 5-128 6-141 (693)
190 1azs_C GS-alpha; complex (lyas 99.8 6.6E-20 2.2E-24 132.7 10.7 118 50-169 211-382 (402)
191 2x2e_A Dynamin-1; nitration, h 99.8 1.5E-20 5.2E-25 135.2 4.0 159 7-168 29-254 (353)
192 1jal_A YCHF protein; nucleotid 99.8 1.2E-17 4E-22 119.5 16.3 145 10-154 3-239 (363)
193 2wsm_A Hydrogenase expression/ 99.8 2.9E-19 9.8E-24 120.6 6.9 151 8-169 29-211 (221)
194 3vqt_A RF-3, peptide chain rel 99.8 2.3E-17 7.7E-22 124.4 16.3 116 7-128 29-166 (548)
195 2hf9_A Probable hydrogenase ni 99.8 8.2E-21 2.8E-25 128.7 -2.4 151 8-169 37-221 (226)
196 3p32_A Probable GTPase RV1496/ 99.8 4E-19 1.4E-23 127.8 6.0 101 58-169 172-281 (355)
197 2qpt_A EH domain-containing pr 99.7 3.8E-18 1.3E-22 128.7 6.9 123 6-131 62-235 (550)
198 1n0u_A EF-2, elongation factor 99.7 1.4E-17 4.8E-22 131.0 10.2 117 7-127 17-163 (842)
199 2dby_A GTP-binding protein; GD 99.7 1.4E-16 4.7E-21 114.6 12.8 146 10-157 2-247 (368)
200 2www_A Methylmalonic aciduria 99.7 3.7E-18 1.3E-22 122.4 4.2 100 58-169 167-276 (349)
201 1yrb_A ATP(GTP)binding protein 99.7 1E-16 3.5E-21 110.8 9.9 109 58-169 109-254 (262)
202 4a9a_A Ribosome-interacting GT 99.7 9.7E-16 3.3E-20 110.2 14.7 154 9-165 72-241 (376)
203 4fn5_A EF-G 1, elongation fact 99.7 2.2E-15 7.5E-20 117.0 16.0 123 1-127 4-150 (709)
204 2p67_A LAO/AO transport system 99.7 3.4E-17 1.2E-21 117.2 5.4 101 58-169 149-258 (341)
205 3j25_A Tetracycline resistance 99.7 2.8E-17 9.6E-22 126.1 4.1 115 10-128 3-133 (638)
206 3zvr_A Dynamin-1; hydrolase, D 99.7 6E-16 2E-20 119.6 11.3 158 7-168 49-274 (772)
207 2yv5_A YJEQ protein; hydrolase 99.6 2E-15 6.7E-20 106.3 8.4 98 68-168 66-165 (302)
208 2qm8_A GTPase/ATPase; G protei 99.6 4.3E-16 1.5E-20 111.2 4.2 102 57-169 147-258 (337)
209 3l82_B F-box only protein 4; T 99.5 1.4E-14 4.7E-19 95.3 7.2 102 66-170 110-221 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 4.6E-13 1.6E-17 96.9 15.3 86 8-93 19-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.5 2.1E-14 7.1E-19 103.8 6.7 88 8-95 21-130 (396)
212 3l2o_B F-box only protein 4; s 99.4 1.7E-13 6E-18 94.3 6.6 103 65-170 194-306 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.3 3.6E-13 1.2E-17 97.3 -0.3 141 9-159 162-318 (369)
214 2qag_B Septin-6, protein NEDD5 99.3 4.3E-11 1.5E-15 87.4 10.0 140 10-154 43-218 (427)
215 3h2y_A GTPase family protein; 99.2 3.6E-11 1.2E-15 86.8 8.6 95 67-168 55-156 (368)
216 2j37_W Signal recognition part 99.2 1.3E-11 4.3E-16 92.1 5.2 151 7-168 99-309 (504)
217 3h2y_A GTPase family protein; 99.2 7.7E-13 2.6E-17 95.5 -1.6 136 9-154 160-312 (368)
218 1tq4_A IIGP1, interferon-induc 99.2 7.3E-10 2.5E-14 80.8 13.3 155 9-170 69-251 (413)
219 3sop_A Neuronal-specific septi 99.1 8.5E-11 2.9E-15 81.4 6.0 136 9-150 2-178 (270)
220 3ec1_A YQEH GTPase; atnos1, at 99.1 1E-10 3.5E-15 84.5 6.0 95 67-168 57-158 (369)
221 1puj_A YLQF, conserved hypothe 99.1 3.9E-10 1.3E-14 78.6 7.5 98 62-169 3-103 (282)
222 3dm5_A SRP54, signal recogniti 98.8 2.2E-08 7.5E-13 73.6 9.4 142 8-161 99-280 (443)
223 2v3c_C SRP54, signal recogniti 98.8 6.9E-09 2.3E-13 76.3 6.1 84 57-151 180-271 (432)
224 1puj_A YLQF, conserved hypothe 98.8 2.7E-09 9.3E-14 74.3 3.7 58 7-69 118-176 (282)
225 3cnl_A YLQF, putative uncharac 98.7 5.1E-09 1.7E-13 72.2 3.3 57 10-70 100-156 (262)
226 3cnl_A YLQF, putative uncharac 98.7 1.7E-08 6E-13 69.5 4.2 94 65-169 4-98 (262)
227 3kl4_A SRP54, signal recogniti 98.7 5E-08 1.7E-12 71.6 6.7 92 57-160 179-278 (433)
228 1f5n_A Interferon-induced guan 98.6 4.2E-08 1.5E-12 74.5 4.9 64 7-70 36-103 (592)
229 1j8m_F SRP54, signal recogniti 98.6 2.9E-07 9.9E-12 64.6 8.5 91 58-161 181-280 (297)
230 3szr_A Interferon-induced GTP- 98.5 5.1E-07 1.8E-11 69.3 8.6 25 11-35 47-71 (608)
231 1t9h_A YLOQ, probable GTPase E 98.5 7.3E-08 2.5E-12 67.8 3.4 91 73-166 78-171 (307)
232 3e70_C DPA, signal recognition 98.4 1.8E-06 6.3E-11 61.3 8.1 142 8-161 128-309 (328)
233 1bif_A 6-phosphofructo-2-kinas 98.4 4.6E-08 1.6E-12 72.9 -0.1 102 7-110 37-148 (469)
234 2rcn_A Probable GTPase ENGC; Y 98.2 1.1E-05 3.6E-10 58.0 8.6 85 78-166 127-213 (358)
235 3q5d_A Atlastin-1; G protein, 98.1 3.8E-06 1.3E-10 61.9 5.5 26 7-32 65-90 (447)
236 1ye8_A Protein THEP1, hypothet 98.0 4.5E-06 1.5E-10 54.2 3.2 23 10-32 1-23 (178)
237 4dzz_A Plasmid partitioning pr 98.0 1.3E-05 4.5E-10 52.8 5.5 85 58-149 76-162 (206)
238 3cwq_A Para family chromosome 97.9 0.00023 7.8E-09 47.2 10.1 85 58-149 68-153 (209)
239 1kgd_A CASK, peripheral plasma 97.9 8.3E-06 2.8E-10 52.9 3.0 23 10-32 6-28 (180)
240 2xxa_A Signal recognition part 97.8 0.00027 9.2E-09 52.1 10.7 84 57-151 183-273 (433)
241 3ney_A 55 kDa erythrocyte memb 97.8 1.4E-05 5E-10 52.5 3.6 28 5-32 15-42 (197)
242 1lvg_A Guanylate kinase, GMP k 97.8 1.1E-05 3.8E-10 53.2 3.0 22 10-31 5-26 (198)
243 1zp6_A Hypothetical protein AT 97.8 1.7E-05 5.8E-10 51.7 3.7 25 8-32 8-32 (191)
244 3tr0_A Guanylate kinase, GMP k 97.7 1.6E-05 5.5E-10 52.4 3.0 23 10-32 8-30 (205)
245 3asz_A Uridine kinase; cytidin 97.7 1.9E-05 6.6E-10 52.3 3.3 25 7-31 4-28 (211)
246 3a00_A Guanylate kinase, GMP k 97.7 1.8E-05 6E-10 51.6 2.9 22 11-32 3-24 (186)
247 4gp7_A Metallophosphoesterase; 97.7 1.8E-05 6.1E-10 50.9 2.8 20 11-30 11-30 (171)
248 3c8u_A Fructokinase; YP_612366 97.7 2.5E-05 8.6E-10 51.8 3.4 25 7-31 20-44 (208)
249 1s96_A Guanylate kinase, GMP k 97.7 2.1E-05 7.2E-10 52.7 3.0 24 10-33 17-40 (219)
250 1znw_A Guanylate kinase, GMP k 97.7 2.1E-05 7.1E-10 52.1 2.9 23 11-33 22-44 (207)
251 1z6g_A Guanylate kinase; struc 97.7 2.2E-05 7.5E-10 52.5 2.9 24 10-33 24-47 (218)
252 3iij_A Coilin-interacting nucl 97.7 3E-05 1E-09 50.1 3.5 25 7-31 9-33 (180)
253 1y63_A LMAJ004144AAA protein; 97.7 3.6E-05 1.2E-09 50.0 3.7 28 5-32 6-33 (184)
254 2j41_A Guanylate kinase; GMP, 97.7 3.2E-05 1.1E-09 51.0 3.4 25 9-33 6-30 (207)
255 3lw7_A Adenylate kinase relate 97.7 3.2E-05 1.1E-09 49.5 3.2 20 10-29 2-21 (179)
256 3tau_A Guanylate kinase, GMP k 97.6 3E-05 1E-09 51.4 3.1 24 10-33 9-32 (208)
257 4eun_A Thermoresistant glucoki 97.6 3.5E-05 1.2E-09 50.7 3.3 24 8-31 28-51 (200)
258 1ex7_A Guanylate kinase; subst 97.6 3.4E-05 1.2E-09 50.3 3.1 21 12-32 4-24 (186)
259 1knq_A Gluconate kinase; ALFA/ 97.6 5.2E-05 1.8E-09 48.7 3.9 24 8-31 7-30 (175)
260 1kag_A SKI, shikimate kinase I 97.6 3.3E-05 1.1E-09 49.5 2.9 23 10-32 5-27 (173)
261 1ukz_A Uridylate kinase; trans 97.6 6.4E-05 2.2E-09 49.5 4.3 26 6-31 12-37 (203)
262 3end_A Light-independent proto 97.6 0.0019 6.6E-08 45.2 12.1 85 57-150 156-242 (307)
263 3tif_A Uncharacterized ABC tra 97.6 4.5E-05 1.5E-09 51.7 3.6 24 11-34 33-56 (235)
264 2cdn_A Adenylate kinase; phosp 97.6 5.5E-05 1.9E-09 49.8 3.8 26 6-31 17-42 (201)
265 1nn5_A Similar to deoxythymidy 97.6 4.4E-05 1.5E-09 50.6 3.3 25 7-31 7-31 (215)
266 2qor_A Guanylate kinase; phosp 97.6 4E-05 1.4E-09 50.6 3.1 25 8-32 11-35 (204)
267 1ly1_A Polynucleotide kinase; 97.6 5.1E-05 1.8E-09 48.8 3.5 22 10-31 3-24 (181)
268 2rcn_A Probable GTPase ENGC; Y 97.6 4.3E-05 1.5E-09 54.8 3.4 24 11-34 217-240 (358)
269 1htw_A HI0065; nucleotide-bind 97.6 4.1E-05 1.4E-09 48.6 2.9 24 10-33 34-57 (158)
270 2pcj_A ABC transporter, lipopr 97.6 3.9E-05 1.3E-09 51.5 2.9 23 11-33 32-54 (224)
271 3fb4_A Adenylate kinase; psych 97.6 4.7E-05 1.6E-09 50.6 3.2 22 10-31 1-22 (216)
272 1kht_A Adenylate kinase; phosp 97.6 5.1E-05 1.7E-09 49.3 3.3 23 9-31 3-25 (192)
273 2i3b_A HCR-ntpase, human cance 97.6 4.3E-05 1.5E-09 50.0 2.9 22 11-32 3-24 (189)
274 2bdt_A BH3686; alpha-beta prot 97.6 4.4E-05 1.5E-09 49.7 2.9 21 11-31 4-24 (189)
275 2bbw_A Adenylate kinase 4, AK4 97.6 5.4E-05 1.8E-09 51.5 3.5 22 9-30 27-48 (246)
276 3dl0_A Adenylate kinase; phosp 97.6 5E-05 1.7E-09 50.5 3.2 22 10-31 1-22 (216)
277 3kb2_A SPBC2 prophage-derived 97.6 5.2E-05 1.8E-09 48.4 3.2 22 11-32 3-24 (173)
278 2onk_A Molybdate/tungstate ABC 97.5 4.9E-05 1.7E-09 51.6 3.2 23 11-33 26-48 (240)
279 3gfo_A Cobalt import ATP-bindi 97.5 5.2E-05 1.8E-09 52.6 3.1 24 11-34 36-59 (275)
280 1b0u_A Histidine permease; ABC 97.5 5.3E-05 1.8E-09 52.1 3.1 24 11-34 34-57 (262)
281 2cbz_A Multidrug resistance-as 97.5 5.9E-05 2E-09 51.1 3.3 23 11-33 33-55 (237)
282 1sgw_A Putative ABC transporte 97.5 7.3E-05 2.5E-09 49.9 3.6 24 11-34 37-60 (214)
283 1cke_A CK, MSSA, protein (cyti 97.5 6.2E-05 2.1E-09 50.4 3.3 23 9-31 5-27 (227)
284 1tev_A UMP-CMP kinase; ploop, 97.5 7.2E-05 2.4E-09 48.7 3.5 24 8-31 2-25 (196)
285 4g1u_C Hemin import ATP-bindin 97.5 8.2E-05 2.8E-09 51.3 3.9 24 11-34 39-62 (266)
286 1mv5_A LMRA, multidrug resista 97.5 9.4E-05 3.2E-09 50.3 4.1 23 11-33 30-52 (243)
287 3cm0_A Adenylate kinase; ATP-b 97.5 8.1E-05 2.8E-09 48.2 3.6 24 8-31 3-26 (186)
288 2eyu_A Twitching motility prot 97.5 5.6E-05 1.9E-09 52.0 2.9 23 10-32 26-48 (261)
289 2if2_A Dephospho-COA kinase; a 97.5 6.1E-05 2.1E-09 49.6 3.0 22 10-31 2-23 (204)
290 2pze_A Cystic fibrosis transme 97.5 8E-05 2.8E-09 50.2 3.6 24 11-34 36-59 (229)
291 1u0l_A Probable GTPase ENGC; p 97.5 7.9E-05 2.7E-09 52.3 3.7 26 10-35 170-195 (301)
292 1g6h_A High-affinity branched- 97.5 7.8E-05 2.7E-09 51.2 3.6 24 11-34 35-58 (257)
293 2olj_A Amino acid ABC transpor 97.5 6.5E-05 2.2E-09 51.7 3.1 24 11-34 52-75 (263)
294 2plr_A DTMP kinase, probable t 97.5 9E-05 3.1E-09 48.9 3.8 24 8-31 3-26 (213)
295 3ec2_A DNA replication protein 97.5 5.6E-05 1.9E-09 48.8 2.6 24 9-32 38-61 (180)
296 2jaq_A Deoxyguanosine kinase; 97.5 7.5E-05 2.6E-09 49.0 3.3 21 11-31 2-22 (205)
297 2v9p_A Replication protein E1; 97.5 6.5E-05 2.2E-09 52.8 3.1 22 10-31 127-148 (305)
298 2rhm_A Putative kinase; P-loop 97.5 8.6E-05 2.9E-09 48.3 3.5 23 9-31 5-27 (193)
299 2qi9_C Vitamin B12 import ATP- 97.5 7.1E-05 2.4E-09 51.1 3.1 23 11-33 28-50 (249)
300 1qhx_A CPT, protein (chloramph 97.5 9E-05 3.1E-09 47.6 3.5 23 10-32 4-26 (178)
301 2ff7_A Alpha-hemolysin translo 97.5 9.5E-05 3.3E-09 50.4 3.8 24 11-34 37-60 (247)
302 1ji0_A ABC transporter; ATP bi 97.5 8.7E-05 3E-09 50.4 3.6 24 11-34 34-57 (240)
303 1vpl_A ABC transporter, ATP-bi 97.5 8.9E-05 3.1E-09 50.8 3.6 24 11-34 43-66 (256)
304 1np6_A Molybdopterin-guanine d 97.5 7.3E-05 2.5E-09 48.2 3.0 23 10-32 7-29 (174)
305 2d2e_A SUFC protein; ABC-ATPas 97.5 7.5E-05 2.6E-09 51.0 3.1 22 11-32 31-52 (250)
306 2ghi_A Transport protein; mult 97.5 8.1E-05 2.8E-09 51.2 3.3 23 11-33 48-70 (260)
307 3tlx_A Adenylate kinase 2; str 97.5 0.0001 3.5E-09 50.1 3.8 24 8-31 28-51 (243)
308 3sr0_A Adenylate kinase; phosp 97.5 8.6E-05 2.9E-09 49.2 3.3 23 10-32 1-23 (206)
309 1t9h_A YLOQ, probable GTPase E 97.5 2.1E-05 7.3E-10 55.3 0.4 24 10-33 174-197 (307)
310 3uc9_A Increased recombination 97.4 0.001 3.5E-08 44.5 8.4 152 6-167 26-194 (233)
311 3vaa_A Shikimate kinase, SK; s 97.4 8.8E-05 3E-09 48.8 3.3 22 10-31 26-47 (199)
312 1jjv_A Dephospho-COA kinase; P 97.4 9.4E-05 3.2E-09 48.8 3.5 22 10-31 3-24 (206)
313 1zd8_A GTP:AMP phosphotransfer 97.4 8.5E-05 2.9E-09 49.9 3.3 23 9-31 7-29 (227)
314 3t61_A Gluconokinase; PSI-biol 97.4 7.4E-05 2.5E-09 49.2 2.9 23 10-32 19-41 (202)
315 1nks_A Adenylate kinase; therm 97.4 9.1E-05 3.1E-09 48.1 3.3 21 11-31 3-23 (194)
316 3aez_A Pantothenate kinase; tr 97.4 0.00011 3.7E-09 51.9 3.9 26 6-31 87-112 (312)
317 2zu0_C Probable ATP-dependent 97.4 8.1E-05 2.8E-09 51.4 3.2 22 11-32 48-69 (267)
318 1qf9_A UMP/CMP kinase, protein 97.4 0.00012 4E-09 47.6 3.8 23 9-31 6-28 (194)
319 3b85_A Phosphate starvation-in 97.4 5.4E-05 1.9E-09 50.3 2.1 22 11-32 24-45 (208)
320 2nq2_C Hypothetical ABC transp 97.4 8.4E-05 2.9E-09 50.9 3.1 24 11-34 33-56 (253)
321 1e4v_A Adenylate kinase; trans 97.4 8.6E-05 3E-09 49.4 3.1 22 10-31 1-22 (214)
322 2ihy_A ABC transporter, ATP-bi 97.4 0.00012 4E-09 50.9 3.8 24 11-34 49-72 (279)
323 2qt1_A Nicotinamide riboside k 97.4 0.00013 4.5E-09 48.2 3.9 25 8-32 20-44 (207)
324 1gvn_B Zeta; postsegregational 97.4 0.00012 4E-09 51.1 3.8 26 6-31 30-55 (287)
325 2ixe_A Antigen peptide transpo 97.4 0.00011 3.7E-09 50.9 3.6 24 11-34 47-70 (271)
326 2yz2_A Putative ABC transporte 97.4 8.8E-05 3E-09 51.2 3.1 23 11-33 35-57 (266)
327 3uie_A Adenylyl-sulfate kinase 97.4 0.00012 4E-09 48.2 3.6 25 8-32 24-48 (200)
328 2v54_A DTMP kinase, thymidylat 97.4 0.00012 4.1E-09 48.1 3.6 25 9-33 4-28 (204)
329 1odf_A YGR205W, hypothetical 3 97.4 0.00014 4.9E-09 50.7 4.1 26 6-31 28-53 (290)
330 2yvu_A Probable adenylyl-sulfa 97.4 0.00015 5.3E-09 47.0 4.1 26 7-32 11-36 (186)
331 3lnc_A Guanylate kinase, GMP k 97.4 5.1E-05 1.7E-09 51.1 1.7 23 10-32 28-51 (231)
332 2yv5_A YJEQ protein; hydrolase 97.4 0.00013 4.4E-09 51.3 3.9 24 10-34 166-189 (302)
333 3tqc_A Pantothenate kinase; bi 97.4 0.00013 4.5E-09 51.6 3.8 26 6-31 89-114 (321)
334 1aky_A Adenylate kinase; ATP:A 97.4 0.00012 4E-09 48.9 3.5 23 9-31 4-26 (220)
335 2ehv_A Hypothetical protein PH 97.4 0.0001 3.4E-09 50.0 3.1 20 11-30 32-51 (251)
336 2pt5_A Shikimate kinase, SK; a 97.4 0.00012 4E-09 46.6 3.2 22 10-31 1-22 (168)
337 2pjz_A Hypothetical protein ST 97.4 0.00014 4.7E-09 50.1 3.7 23 11-33 32-54 (263)
338 2wwf_A Thymidilate kinase, put 97.4 0.00014 4.7E-09 48.1 3.6 24 8-31 9-32 (212)
339 1uj2_A Uridine-cytidine kinase 97.4 0.00013 4.3E-09 49.9 3.5 27 5-31 18-44 (252)
340 2jeo_A Uridine-cytidine kinase 97.4 0.00013 4.6E-09 49.5 3.5 24 8-31 24-47 (245)
341 3umf_A Adenylate kinase; rossm 97.4 0.00018 6.2E-09 48.0 4.1 25 8-32 27-52 (217)
342 4a74_A DNA repair and recombin 97.4 9.7E-05 3.3E-09 49.4 2.7 22 11-32 27-48 (231)
343 3trf_A Shikimate kinase, SK; a 97.4 0.00013 4.4E-09 47.3 3.2 22 10-31 6-27 (185)
344 2c95_A Adenylate kinase 1; tra 97.4 0.00014 4.7E-09 47.4 3.4 24 8-31 8-31 (196)
345 3co5_A Putative two-component 97.3 0.00064 2.2E-08 42.2 6.2 24 9-32 27-50 (143)
346 2f1r_A Molybdopterin-guanine d 97.3 5E-05 1.7E-09 48.9 1.1 22 11-32 4-25 (171)
347 1uf9_A TT1252 protein; P-loop, 97.3 0.00016 5.4E-09 47.4 3.5 25 8-32 7-31 (203)
348 1via_A Shikimate kinase; struc 97.3 0.00013 4.5E-09 46.8 3.0 21 11-31 6-26 (175)
349 2xb4_A Adenylate kinase; ATP-b 97.3 0.00015 5.1E-09 48.6 3.3 22 10-31 1-22 (223)
350 3nh6_A ATP-binding cassette SU 97.3 8.4E-05 2.9E-09 52.3 2.1 24 10-33 81-104 (306)
351 3jvv_A Twitching mobility prot 97.3 0.00012 4.1E-09 52.6 2.9 22 11-32 125-146 (356)
352 1rz3_A Hypothetical protein rb 97.3 0.00019 6.6E-09 47.2 3.7 25 7-31 20-44 (201)
353 2vli_A Antibiotic resistance p 97.3 8.8E-05 3E-09 47.9 2.0 24 8-31 4-27 (183)
354 1lw7_A Transcriptional regulat 97.3 0.00011 3.6E-09 53.0 2.6 25 9-33 170-194 (365)
355 1zak_A Adenylate kinase; ATP:A 97.3 0.00014 4.9E-09 48.5 3.0 23 9-31 5-27 (222)
356 2x8a_A Nuclear valosin-contain 97.3 0.00013 4.6E-09 50.4 2.9 22 11-32 46-67 (274)
357 2bbs_A Cystic fibrosis transme 97.3 0.00015 5.1E-09 50.6 3.1 23 11-33 66-88 (290)
358 2kjq_A DNAA-related protein; s 97.3 9.8E-05 3.3E-09 46.4 2.0 24 10-33 37-60 (149)
359 1ak2_A Adenylate kinase isoenz 97.3 0.00019 6.6E-09 48.3 3.6 24 8-31 15-38 (233)
360 2f6r_A COA synthase, bifunctio 97.3 0.00022 7.7E-09 49.5 3.9 24 7-30 73-96 (281)
361 1xjc_A MOBB protein homolog; s 97.3 0.00018 6E-09 46.1 3.1 23 10-32 5-27 (169)
362 3fvq_A Fe(3+) IONS import ATP- 97.3 0.00017 6E-09 51.7 3.4 24 11-34 32-55 (359)
363 2pbr_A DTMP kinase, thymidylat 97.3 0.00018 6E-09 46.8 3.2 21 11-31 2-22 (195)
364 1rj9_A FTSY, signal recognitio 97.3 0.00015 5.1E-09 51.0 2.9 23 9-31 102-124 (304)
365 1sq5_A Pantothenate kinase; P- 97.3 0.0002 6.7E-09 50.5 3.5 25 7-31 78-102 (308)
366 1vht_A Dephospho-COA kinase; s 97.3 0.00023 7.7E-09 47.4 3.7 23 9-31 4-26 (218)
367 2pt7_A CAG-ALFA; ATPase, prote 97.3 0.00015 5E-09 51.6 2.8 25 10-34 172-196 (330)
368 3be4_A Adenylate kinase; malar 97.3 0.00017 5.9E-09 48.0 3.0 23 9-31 5-27 (217)
369 2p5t_B PEZT; postsegregational 97.3 0.00016 5.4E-09 49.4 2.9 25 7-31 30-54 (253)
370 1ixz_A ATP-dependent metallopr 97.3 0.00017 5.7E-09 49.2 3.0 22 11-32 51-72 (254)
371 4e22_A Cytidylate kinase; P-lo 97.3 0.00022 7.6E-09 48.7 3.6 22 9-30 27-48 (252)
372 2yyz_A Sugar ABC transporter, 97.3 0.00017 5.9E-09 51.8 3.1 24 11-34 31-54 (359)
373 2gza_A Type IV secretion syste 97.2 0.00015 5.1E-09 52.3 2.8 25 10-34 176-200 (361)
374 1z47_A CYSA, putative ABC-tran 97.2 0.00022 7.4E-09 51.2 3.6 24 11-34 43-66 (355)
375 3tui_C Methionine import ATP-b 97.2 0.00022 7.7E-09 51.3 3.6 24 11-34 56-79 (366)
376 3rlf_A Maltose/maltodextrin im 97.2 0.00018 6.3E-09 52.0 3.2 24 11-34 31-54 (381)
377 2bwj_A Adenylate kinase 5; pho 97.2 0.0002 6.9E-09 46.8 3.2 23 9-31 12-34 (199)
378 1jbk_A CLPB protein; beta barr 97.2 0.0002 7E-09 46.1 3.2 24 9-32 43-66 (195)
379 2ewv_A Twitching motility prot 97.2 0.00018 6E-09 52.1 3.1 23 10-32 137-159 (372)
380 2z0h_A DTMP kinase, thymidylat 97.2 0.00021 7.1E-09 46.6 3.2 22 11-32 2-23 (197)
381 3b9q_A Chloroplast SRP recepto 97.2 0.00018 6.1E-09 50.6 3.0 23 9-31 100-122 (302)
382 2it1_A 362AA long hypothetical 97.2 0.00024 8.4E-09 51.1 3.6 24 11-34 31-54 (362)
383 1g29_1 MALK, maltose transport 97.2 0.0002 6.7E-09 51.8 3.1 24 11-34 31-54 (372)
384 1v43_A Sugar-binding transport 97.2 0.0002 6.9E-09 51.7 3.2 24 11-34 39-62 (372)
385 3r20_A Cytidylate kinase; stru 97.2 0.00023 8E-09 48.0 3.3 24 8-31 8-31 (233)
386 2pez_A Bifunctional 3'-phospho 97.2 0.00029 9.9E-09 45.4 3.6 24 8-31 4-27 (179)
387 2ze6_A Isopentenyl transferase 97.2 0.00021 7.2E-09 48.9 3.0 21 11-31 3-23 (253)
388 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00028 9.5E-09 48.4 3.6 22 10-31 5-26 (260)
389 2iyv_A Shikimate kinase, SK; t 97.2 0.00022 7.5E-09 46.1 2.8 21 11-31 4-24 (184)
390 2vp4_A Deoxynucleoside kinase; 97.2 0.00028 9.7E-09 47.4 3.4 26 7-32 18-43 (230)
391 1gtv_A TMK, thymidylate kinase 97.2 8E-05 2.7E-09 49.3 0.7 21 11-31 2-22 (214)
392 1p9r_A General secretion pathw 97.2 0.00021 7.2E-09 52.4 2.9 23 11-33 169-191 (418)
393 1in4_A RUVB, holliday junction 97.2 0.00021 7.3E-09 50.8 2.9 23 10-32 52-74 (334)
394 1e6c_A Shikimate kinase; phosp 97.2 0.00027 9.2E-09 45.1 3.1 21 11-31 4-24 (173)
395 2oap_1 GSPE-2, type II secreti 97.2 0.00022 7.5E-09 53.7 3.0 24 10-33 261-284 (511)
396 1iy2_A ATP-dependent metallopr 97.1 0.00025 8.5E-09 49.1 3.0 22 11-32 75-96 (278)
397 1zuh_A Shikimate kinase; alpha 97.1 0.00033 1.1E-08 44.6 3.3 22 10-31 8-29 (168)
398 3kta_A Chromosome segregation 97.1 0.00028 9.7E-09 45.5 2.9 21 11-31 28-48 (182)
399 3gd7_A Fusion complex of cysti 97.1 0.00026 8.9E-09 51.4 2.9 22 11-32 49-70 (390)
400 3d31_A Sulfate/molybdate ABC t 97.1 0.00022 7.5E-09 51.1 2.4 24 11-34 28-51 (348)
401 4ido_A Atlastin-1; GTPase, GTP 97.1 0.0013 4.6E-08 48.5 6.6 23 8-30 66-88 (457)
402 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00032 1.1E-08 46.9 2.9 21 11-31 25-45 (235)
403 2og2_A Putative signal recogni 97.1 0.00031 1.1E-08 50.5 3.0 23 9-31 157-179 (359)
404 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.0004 1.4E-08 43.5 3.1 19 12-30 26-44 (149)
405 2grj_A Dephospho-COA kinase; T 97.1 0.00046 1.6E-08 45.2 3.5 26 7-32 10-35 (192)
406 2p65_A Hypothetical protein PF 97.0 0.0003 1E-08 45.2 2.5 24 9-32 43-66 (187)
407 1m7g_A Adenylylsulfate kinase; 97.0 0.00049 1.7E-08 45.6 3.6 24 8-31 24-47 (211)
408 4eaq_A DTMP kinase, thymidylat 97.0 0.00061 2.1E-08 45.9 4.0 25 8-32 25-49 (229)
409 1lv7_A FTSH; alpha/beta domain 97.0 0.00047 1.6E-08 47.1 3.6 24 9-32 45-68 (257)
410 3bos_A Putative DNA replicatio 97.0 0.00039 1.3E-08 46.6 3.1 25 8-32 51-75 (242)
411 2w58_A DNAI, primosome compone 97.0 0.00041 1.4E-08 45.5 3.1 23 10-32 55-77 (202)
412 3crm_A TRNA delta(2)-isopenten 97.0 0.00054 1.8E-08 48.5 3.8 22 10-31 6-27 (323)
413 2yhs_A FTSY, cell division pro 97.0 0.00036 1.2E-08 52.1 3.0 23 9-31 293-315 (503)
414 3t15_A Ribulose bisphosphate c 97.0 0.00055 1.9E-08 47.8 3.8 25 8-32 35-59 (293)
415 3nwj_A ATSK2; P loop, shikimat 97.0 0.00038 1.3E-08 47.5 2.9 23 9-31 48-70 (250)
416 1oxx_K GLCV, glucose, ABC tran 97.0 0.00022 7.5E-09 51.2 1.7 24 11-34 33-56 (353)
417 3d3q_A TRNA delta(2)-isopenten 97.0 0.00054 1.9E-08 48.8 3.6 22 10-31 8-29 (340)
418 2obl_A ESCN; ATPase, hydrolase 97.0 0.00041 1.4E-08 49.7 3.0 25 10-34 72-96 (347)
419 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00035 1.2E-08 51.9 2.7 23 10-32 139-161 (460)
420 1cr0_A DNA primase/helicase; R 97.0 0.0004 1.4E-08 48.5 2.7 22 11-32 37-58 (296)
421 3gmt_A Adenylate kinase; ssgci 97.0 0.00055 1.9E-08 46.0 3.3 25 7-31 6-30 (230)
422 1nij_A Hypothetical protein YJ 97.0 0.00031 1.1E-08 49.7 2.2 23 11-33 6-28 (318)
423 1ltq_A Polynucleotide kinase; 97.0 0.00059 2E-08 47.7 3.5 22 10-31 3-24 (301)
424 1q3t_A Cytidylate kinase; nucl 96.9 0.00066 2.2E-08 45.8 3.5 26 6-31 13-38 (236)
425 2cvh_A DNA repair and recombin 96.9 0.00051 1.8E-08 45.5 2.9 21 11-31 22-42 (220)
426 1n0w_A DNA repair protein RAD5 96.9 0.00053 1.8E-08 46.2 3.0 22 11-32 26-47 (243)
427 1yqt_A RNAse L inhibitor; ATP- 96.9 0.00079 2.7E-08 51.1 4.2 25 10-34 48-72 (538)
428 3n70_A Transport activator; si 96.9 0.00066 2.3E-08 42.2 3.2 26 8-33 23-48 (145)
429 1svm_A Large T antigen; AAA+ f 96.9 0.00052 1.8E-08 49.7 2.9 23 9-31 169-191 (377)
430 3ozx_A RNAse L inhibitor; ATP 96.9 0.00077 2.6E-08 51.1 3.9 25 11-35 27-51 (538)
431 3euj_A Chromosome partition pr 96.9 0.00061 2.1E-08 50.8 3.0 21 11-31 31-51 (483)
432 3b60_A Lipid A export ATP-bind 96.9 0.00077 2.6E-08 51.6 3.6 23 11-33 371-393 (582)
433 3syl_A Protein CBBX; photosynt 96.9 0.00085 2.9E-08 46.9 3.6 25 7-31 65-89 (309)
434 3h4m_A Proteasome-activating n 96.9 0.00073 2.5E-08 46.7 3.2 25 8-32 50-74 (285)
435 3j16_B RLI1P; ribosome recycli 96.9 0.0009 3.1E-08 51.4 4.0 25 11-35 105-129 (608)
436 2dpy_A FLII, flagellum-specifi 96.8 0.00064 2.2E-08 50.2 3.0 24 10-33 158-181 (438)
437 3zvl_A Bifunctional polynucleo 96.8 0.0011 3.8E-08 48.7 4.3 25 8-32 257-281 (416)
438 3b5x_A Lipid A export ATP-bind 96.8 0.00089 3E-08 51.3 3.9 24 11-34 371-394 (582)
439 1tue_A Replication protein E1; 96.8 0.00054 1.9E-08 45.2 2.3 22 10-31 59-80 (212)
440 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.00083 2.9E-08 45.8 3.4 25 8-32 38-62 (262)
441 3qf7_A RAD50; ABC-ATPase, ATPa 96.8 0.0007 2.4E-08 48.8 3.1 19 12-30 26-44 (365)
442 3b9p_A CG5977-PA, isoform A; A 96.8 0.00072 2.5E-08 47.1 3.1 24 9-32 54-77 (297)
443 3a8t_A Adenylate isopentenyltr 96.8 0.0011 3.7E-08 47.2 3.9 23 10-32 41-63 (339)
444 3ake_A Cytidylate kinase; CMP 96.8 0.00095 3.2E-08 43.8 3.5 21 11-31 4-24 (208)
445 1njg_A DNA polymerase III subu 96.8 0.00078 2.7E-08 45.0 3.1 21 11-31 47-67 (250)
446 2chg_A Replication factor C sm 96.8 0.00081 2.8E-08 44.3 3.1 22 11-32 40-61 (226)
447 1d2n_A N-ethylmaleimide-sensit 96.8 0.0012 4.1E-08 45.4 3.9 26 7-32 62-87 (272)
448 3ld9_A DTMP kinase, thymidylat 96.8 0.0012 3.9E-08 44.3 3.7 29 3-31 15-43 (223)
449 3bk7_A ABC transporter ATP-bin 96.8 0.0011 3.9E-08 50.9 4.1 24 11-34 119-142 (607)
450 3foz_A TRNA delta(2)-isopenten 96.8 0.0012 4E-08 46.4 3.7 24 9-32 10-33 (316)
451 2h92_A Cytidylate kinase; ross 96.8 0.00085 2.9E-08 44.5 3.0 23 9-31 3-25 (219)
452 1l8q_A Chromosomal replication 96.8 0.00079 2.7E-08 47.6 2.9 23 10-32 38-60 (324)
453 3cf0_A Transitional endoplasmi 96.8 0.0009 3.1E-08 46.9 3.1 24 9-32 49-72 (301)
454 3ozx_A RNAse L inhibitor; ATP 96.7 0.0012 4.1E-08 50.1 3.8 25 11-35 296-320 (538)
455 2qmh_A HPR kinase/phosphorylas 96.7 0.001 3.4E-08 43.7 3.0 25 9-33 34-58 (205)
456 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0014 4.6E-08 49.8 4.1 24 11-34 314-337 (538)
457 4a82_A Cystic fibrosis transme 96.7 0.00073 2.5E-08 51.7 2.6 24 10-33 368-391 (578)
458 4fcw_A Chaperone protein CLPB; 96.7 0.0015 5.2E-08 45.7 4.0 23 10-32 48-70 (311)
459 2yl4_A ATP-binding cassette SU 96.7 0.00081 2.8E-08 51.6 2.8 23 11-33 372-394 (595)
460 1nlf_A Regulatory protein REPA 96.7 0.0009 3.1E-08 46.3 2.7 21 11-31 32-52 (279)
461 2px0_A Flagellar biosynthesis 96.7 0.0009 3.1E-08 46.8 2.7 85 58-152 183-273 (296)
462 3bk7_A ABC transporter ATP-bin 96.7 0.0014 5E-08 50.3 4.1 25 11-35 384-408 (607)
463 3qf4_B Uncharacterized ABC tra 96.7 0.00091 3.1E-08 51.4 3.0 25 10-34 382-406 (598)
464 1p5z_B DCK, deoxycytidine kina 96.7 0.00086 2.9E-08 46.0 2.6 25 8-32 23-47 (263)
465 2ocp_A DGK, deoxyguanosine kin 96.7 0.0013 4.6E-08 44.4 3.5 24 9-32 2-25 (241)
466 3v9p_A DTMP kinase, thymidylat 96.7 0.00099 3.4E-08 44.8 2.7 25 8-32 24-48 (227)
467 1vma_A Cell division protein F 96.7 0.0011 3.8E-08 46.6 3.0 86 58-153 187-284 (306)
468 2qby_A CDC6 homolog 1, cell di 96.7 0.00099 3.4E-08 47.8 2.8 24 9-32 45-68 (386)
469 3qf4_A ABC transporter, ATP-bi 96.6 0.0011 3.7E-08 50.9 3.1 23 11-33 371-393 (587)
470 1fnn_A CDC6P, cell division co 96.6 0.0012 4.1E-08 47.5 3.2 23 11-33 46-68 (389)
471 3qks_A DNA double-strand break 96.6 0.0013 4.6E-08 43.3 3.1 19 12-30 26-44 (203)
472 3exa_A TRNA delta(2)-isopenten 96.6 0.0016 5.4E-08 45.9 3.6 24 9-32 3-26 (322)
473 1sxj_E Activator 1 40 kDa subu 96.6 0.001 3.5E-08 47.5 2.6 21 12-32 39-59 (354)
474 1ofh_A ATP-dependent HSL prote 96.6 0.0014 4.7E-08 45.8 3.2 24 9-32 50-73 (310)
475 4edh_A DTMP kinase, thymidylat 96.6 0.0018 6.3E-08 43.0 3.6 25 7-31 4-28 (213)
476 3j16_B RLI1P; ribosome recycli 96.6 0.0018 6.1E-08 49.8 3.9 24 12-35 381-404 (608)
477 3eie_A Vacuolar protein sortin 96.6 0.0015 5.2E-08 46.1 3.3 24 9-32 51-74 (322)
478 2dr3_A UPF0273 protein PH0284; 96.6 0.0014 4.8E-08 44.2 2.9 21 11-31 25-45 (247)
479 4b4t_M 26S protease regulatory 96.6 0.0016 5.6E-08 47.9 3.4 25 8-32 214-238 (434)
480 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0021 7.1E-08 46.1 3.8 24 8-31 23-46 (359)
481 1a7j_A Phosphoribulokinase; tr 96.6 0.00073 2.5E-08 47.2 1.5 24 8-31 4-27 (290)
482 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0015 5E-08 46.3 3.1 24 9-32 45-68 (322)
483 1sxj_C Activator 1 40 kDa subu 96.5 0.0014 4.8E-08 46.6 2.9 22 11-32 48-69 (340)
484 3lv8_A DTMP kinase, thymidylat 96.5 0.0018 6.1E-08 43.8 3.2 26 6-31 24-49 (236)
485 2qgz_A Helicase loader, putati 96.5 0.0017 6E-08 45.6 3.3 24 9-32 152-175 (308)
486 4b4t_K 26S protease regulatory 96.5 0.0018 6.1E-08 47.7 3.4 24 9-32 206-229 (428)
487 1pzn_A RAD51, DNA repair and r 96.5 0.0014 4.7E-08 47.0 2.7 23 10-32 132-154 (349)
488 2v1u_A Cell division control p 96.5 0.0016 5.4E-08 46.8 3.0 25 8-32 43-67 (387)
489 1qhl_A Protein (cell division 96.5 0.00018 6.1E-09 48.4 -1.9 21 12-32 30-50 (227)
490 4b4t_L 26S protease subunit RP 96.5 0.002 6.9E-08 47.5 3.4 25 8-32 214-238 (437)
491 3pfi_A Holliday junction ATP-d 96.5 0.0021 7.2E-08 45.6 3.4 24 9-32 55-78 (338)
492 3qkt_A DNA double-strand break 96.4 0.002 6.7E-08 46.0 3.1 21 9-30 24-44 (339)
493 3ch4_B Pmkase, phosphomevalona 96.4 0.0038 1.3E-07 41.1 4.2 31 1-31 3-33 (202)
494 2r62_A Cell division protease 96.4 0.00075 2.6E-08 46.3 0.9 23 10-32 45-67 (268)
495 3uk6_A RUVB-like 2; hexameric 96.4 0.0019 6.4E-08 46.4 3.0 23 10-32 71-93 (368)
496 3pxg_A Negative regulator of g 96.4 0.0017 5.9E-08 48.4 2.8 25 8-32 200-224 (468)
497 3hws_A ATP-dependent CLP prote 96.4 0.0028 9.5E-08 45.5 3.8 25 8-32 50-74 (363)
498 1sxj_D Activator 1 41 kDa subu 96.4 0.0019 6.5E-08 45.9 2.9 22 11-32 60-81 (353)
499 2z4s_A Chromosomal replication 96.4 0.0019 6.3E-08 47.8 2.9 23 10-32 131-153 (440)
500 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0019 6.4E-08 48.5 2.9 22 11-32 66-87 (499)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=6.2e-45 Score=245.34 Aligned_cols=165 Identities=78% Similarity=1.166 Sum_probs=146.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
+.+++||+++|.+|||||||++++..+.+...+.||.+.++.......++..+++.||||+|+++|..+...++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 46789999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||++++++|+.+..|+..+.....+++|++||+||+|+.+.+.+..++++++++.++++|++|||++|.||+++|+.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhC
Q 030856 166 IRRLI 170 (170)
Q Consensus 166 l~~~i 170 (170)
|++.|
T Consensus 170 i~~~i 174 (216)
T 4dkx_A 170 VAAAL 174 (216)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98764
No 2
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.5e-38 Score=207.00 Aligned_cols=165 Identities=38% Similarity=0.752 Sum_probs=151.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
+.++++|+++|++|+|||||++++.++.+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34679999999999999999999999888877788888888777888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||++++++++.+..|+..+.....++.|+++|+||+|+..++.+..++++.++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998887788999999999999877788889999999999999999999999999999999
Q ss_pred HHhhC
Q 030856 166 IRRLI 170 (170)
Q Consensus 166 l~~~i 170 (170)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98764
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-39 Score=213.89 Aligned_cols=163 Identities=39% Similarity=0.633 Sum_probs=151.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+|||||.+.+...+..++..+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...++++++|||++|.|++++|++|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998778888899999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 184 ~~~ 186 (201)
T 2ew1_A 184 ACR 186 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.1e-38 Score=211.71 Aligned_cols=166 Identities=36% Similarity=0.679 Sum_probs=148.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
....+.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34456899999999999999999999999887777788887887778888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
++++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.+++..+++++++||+++.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988777789999999999998777888899999999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|.+.
T Consensus 176 ~~l~~~ 181 (191)
T 2a5j_A 176 INTAKE 181 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 5
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.5e-39 Score=214.47 Aligned_cols=164 Identities=41% Similarity=0.699 Sum_probs=143.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....++|+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 34579999999999999999999999988777788888788888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~ 164 (170)
|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...++ ++++|||++|.|++++|+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999887767899999999999988788888999999999999 999999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
+|.+.
T Consensus 186 ~l~~~ 190 (201)
T 2hup_A 186 RVATE 190 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 6
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.5e-38 Score=208.60 Aligned_cols=166 Identities=33% Similarity=0.624 Sum_probs=152.1
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
....+.++|+++|.+|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34456799999999999999999999999888777888887877777888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988877789999999999998778888899999999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|.+.
T Consensus 170 ~~l~~~ 175 (179)
T 1z0f_A 170 LEAAKK 175 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 7
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.9e-38 Score=207.73 Aligned_cols=166 Identities=39% Similarity=0.703 Sum_probs=151.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
...+.++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34567999999999999999999999998887777888878878888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
+++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988888888999999999999999999999999999999
Q ss_pred HHHhhC
Q 030856 165 TIRRLI 170 (170)
Q Consensus 165 ~l~~~i 170 (170)
+|.+.+
T Consensus 168 ~l~~~~ 173 (181)
T 2efe_B 168 EIARRL 173 (181)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 998764
No 8
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-38 Score=205.14 Aligned_cols=163 Identities=44% Similarity=0.763 Sum_probs=150.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
++++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 56899999999999999999999998887788888888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC---cccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
|||++++.+++.+..|+..+.....++.|+++|+||+|+... +++..++++.++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887778999999999998765 67788889999999999999999999999999999
Q ss_pred HHHhhC
Q 030856 165 TIRRLI 170 (170)
Q Consensus 165 ~l~~~i 170 (170)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998764
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=209.51 Aligned_cols=163 Identities=39% Similarity=0.664 Sum_probs=153.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45699999999999999999999999988888889888888888888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|++|
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 173 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988877889999999999999888899999999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 174 ~~~ 176 (196)
T 3tkl_A 174 AAE 176 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 10
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.5e-38 Score=208.99 Aligned_cols=164 Identities=35% Similarity=0.627 Sum_probs=151.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45679999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999988877778999999999999877788889999999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 167 l~~~ 170 (186)
T 2bme_A 167 CARK 170 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 11
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.7e-39 Score=212.50 Aligned_cols=164 Identities=41% Similarity=0.693 Sum_probs=123.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999999888778888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999887888889999999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 165 l~~~ 168 (183)
T 2fu5_C 165 LARD 168 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 12
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.8e-38 Score=204.25 Aligned_cols=164 Identities=37% Similarity=0.682 Sum_probs=151.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++.+..+...+.++.+.++........+....+.+||+||.+.+......++.++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999999888788888888887788888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++.+++.+..|+..+.....++.|+++|+||+|+...+++..++++.++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988777889999999999998878888899999999999999999999999999999999
Q ss_pred HhhC
Q 030856 167 RRLI 170 (170)
Q Consensus 167 ~~~i 170 (170)
.+.+
T Consensus 164 ~~~i 167 (170)
T 1z0j_A 164 SRRI 167 (170)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.2e-38 Score=209.12 Aligned_cols=165 Identities=36% Similarity=0.670 Sum_probs=151.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
.....++|+++|.+|+|||||++++.+..+...+.++.+.++........+..+.+.+||+||++.+...+..++..+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 34557999999999999999999999998877778888878877777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
+++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++++++..+++++++||++|.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999988788888899999999999999999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
+|.+.
T Consensus 178 ~l~~~ 182 (189)
T 2gf9_A 178 RLVDV 182 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 14
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.7e-38 Score=212.07 Aligned_cols=168 Identities=39% Similarity=0.639 Sum_probs=153.1
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|++ .....++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 1 MNS-EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp --C-CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred CCc-ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence 543 3456799999999999999999999999988888888888888888888888899999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
++|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999999999999988777789999999999998888888899999999999999999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|++|.+.
T Consensus 160 ~l~~~l~~~ 168 (206)
T 2bcg_Y 160 DAFLTMARQ 168 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 15
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-38 Score=209.59 Aligned_cols=165 Identities=38% Similarity=0.701 Sum_probs=151.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.+||+++|++|+|||||++++.+..+...+.++.+.++.......++....+.+||+||.+.+...+..++.++|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 45689999999999999999999999988777788888888777787888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||+++.|+++++++
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877678999999999999877788889999999999999999999999999999999
Q ss_pred HHhhC
Q 030856 166 IRRLI 170 (170)
Q Consensus 166 l~~~i 170 (170)
|.+.+
T Consensus 180 l~~~i 184 (192)
T 2fg5_A 180 ISRQI 184 (192)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98764
No 16
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.8e-38 Score=206.20 Aligned_cols=165 Identities=79% Similarity=1.176 Sum_probs=152.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
+.++++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||.+.+...+..++.++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|+++++++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988877678999999999999887888889999999999999999999999999999999
Q ss_pred HHhhC
Q 030856 166 IRRLI 170 (170)
Q Consensus 166 l~~~i 170 (170)
|.+.+
T Consensus 171 l~~~~ 175 (179)
T 2y8e_A 171 VAAAL 175 (179)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98764
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.1e-38 Score=207.69 Aligned_cols=163 Identities=37% Similarity=0.654 Sum_probs=144.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999999888778888888888788888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999999887766789999999999998878888899999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 164 ~~~ 166 (170)
T 1z08_A 164 CKR 166 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=7.5e-38 Score=206.22 Aligned_cols=164 Identities=30% Similarity=0.511 Sum_probs=149.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
...+.+||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 456789999999999999999999999988888888877665 6667788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC-CCCChHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKGC 162 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~v~~~ 162 (170)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.+++.++++++++||+ ++.|++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 999999999999999999999887643 3689999999999998888999999999999999999999999 99999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
|++|.+.
T Consensus 173 ~~~l~~~ 179 (183)
T 3kkq_A 173 FHDLVRV 179 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 19
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=209.90 Aligned_cols=166 Identities=34% Similarity=0.615 Sum_probs=144.2
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
.+....++|+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||.+.+...+..++.++|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 34556899999999999999999999998887777888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-CCeEEEeecCCCCChHHH
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~ 162 (170)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++.+++.. +++++++||++|.|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999888877678999999999999887888888899999885 789999999999999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
|++|.+.
T Consensus 181 ~~~l~~~ 187 (192)
T 2il1_A 181 FLKLVDD 187 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999865
No 20
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=8.7e-38 Score=207.47 Aligned_cols=169 Identities=37% Similarity=0.605 Sum_probs=149.4
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeee-EEEEEeCCe---------EEEEEEEecCChhh
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER 70 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~ 70 (170)
|++......++|+++|++|+|||||++++.+..+...+.++.+.++. ......++. .+.+.+||+||.+.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 55555677899999999999999999999998888777888887776 555555555 78999999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEE
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
+...+..++.++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++...+++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999999887765 6899999999999987778888999999999999999
Q ss_pred EeecCCCCChHHHHHHHHhh
Q 030856 150 ETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~ 169 (170)
++||+++.|++++|++|.+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999864
No 21
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=207.62 Aligned_cols=164 Identities=32% Similarity=0.617 Sum_probs=150.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||.+.+...+..++.++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34579999999999999999999999988877788888888777787888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|++
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877788889999999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 182 l~~~ 185 (193)
T 2oil_A 182 VLKE 185 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
No 22
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=9.6e-38 Score=206.83 Aligned_cols=165 Identities=34% Similarity=0.585 Sum_probs=148.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-hhhhhhhcCCcE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSV 84 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~ 84 (170)
..+.+||+++|.+|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||.+.+. .++..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4567999999999999999999999998888888888888888888888888999999999999988 889999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC---CChH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG---FNIK 160 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~---~~v~ 160 (170)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.++...+++++++||+++ .|++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999988875 468999999999999887888889999999999999999999999 9999
Q ss_pred HHHHHHHhhC
Q 030856 161 GCSPTIRRLI 170 (170)
Q Consensus 161 ~~~~~l~~~i 170 (170)
++|++|.+.+
T Consensus 177 ~l~~~l~~~i 186 (189)
T 1z06_A 177 AIFMTLAHKL 186 (189)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.7e-38 Score=205.09 Aligned_cols=163 Identities=39% Similarity=0.675 Sum_probs=148.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.++|+++|++|+|||||++++.+......+.++.+.+.....+..++..+.+.+||+||.+.+...+..++.++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988888888888888888888889889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
++|||++++++++.+..|+..+.... ++.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999987765 58999999999999888888889999999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 165 l~~~ 168 (181)
T 3tw8_B 165 ITEL 168 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 24
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.4e-38 Score=207.56 Aligned_cols=164 Identities=32% Similarity=0.422 Sum_probs=147.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
+..+.++|+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|+
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 345789999999999999999999998888888888887666 6667788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++++.+++..+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 9999999999999999999998877654 579999999999998888999999999999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|.+.
T Consensus 161 ~~l~~~ 166 (181)
T 3t5g_A 161 RRIILE 166 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 25
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-37 Score=207.72 Aligned_cols=163 Identities=35% Similarity=0.642 Sum_probs=150.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||.+.+...+..++.++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45799999999999999999999999887777888888888778888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998888888899999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 166 ~~~ 168 (203)
T 1zbd_A 166 VDV 168 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 26
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=209.93 Aligned_cols=163 Identities=36% Similarity=0.645 Sum_probs=140.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||.+.+...+..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999998887777888887888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.+++..++++++|||++|.|++++|++|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998778888899999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 183 ~~~ 185 (200)
T 2o52_A 183 ART 185 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-37 Score=204.35 Aligned_cols=164 Identities=39% Similarity=0.675 Sum_probs=142.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
..+.++|+++|++|+|||||++++.+..+. ..+.++.+.++.......++..+.+.+||+||++.+...+..++.++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999998875 5667888888887777888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.+++..+++++++||+++.|++++|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999988888888999999999999999999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
+|.+.
T Consensus 167 ~l~~~ 171 (180)
T 2g6b_A 167 AIAKE 171 (180)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 28
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-39 Score=211.96 Aligned_cols=163 Identities=35% Similarity=0.646 Sum_probs=151.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...+||+++|.+|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 45799999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998888889999999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 181 ~~~ 183 (191)
T 3dz8_A 181 VDA 183 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 29
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=7.5e-38 Score=203.72 Aligned_cols=161 Identities=40% Similarity=0.736 Sum_probs=142.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
..++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998887888888888887888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
|||++++++++.+..|+..+......+.|+++|+||+|+ ..+.+..++++.+++..+++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998887778999999999998 5566778889999999999999999999999999999998
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 161 ~~ 162 (170)
T 1g16_A 161 KL 162 (170)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 30
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=209.21 Aligned_cols=166 Identities=25% Similarity=0.345 Sum_probs=141.6
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-hhhhhhcCC
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDS 82 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~ 82 (170)
.+....++|+++|++|||||||++++.+......+.++.+.+.....+.+++..+.+.+||++|.+.+.. +...++..+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3455679999999999999999999986544333445555566666777888899999999999987765 777889999
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (170)
|++|+|||++++++|+.+..|+..+..... .+.|+++|+||+|+...+.+..++++.+++..++++++|||++|.|+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 999999999999999999999999877654 5799999999999988888888999999999999999999999999999
Q ss_pred HHHHHHhh
Q 030856 162 CSPTIRRL 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
+|++|++.
T Consensus 178 lf~~l~~~ 185 (195)
T 3cbq_A 178 LFEGAVRQ 185 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=9.5e-38 Score=202.87 Aligned_cols=162 Identities=35% Similarity=0.610 Sum_probs=149.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|+++++++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999887766 689999999999998777888899999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 162 ~~~ 164 (168)
T 1z2a_A 162 AEK 164 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 32
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6e-38 Score=209.42 Aligned_cols=165 Identities=40% Similarity=0.642 Sum_probs=137.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
...+.++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||.+.+...+..++.++|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 44567999999999999999999999998877778888878877888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC------CCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV------EKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..++++.++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999999887766789999999999986 4567788899999999999999999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
++++|++|.+.
T Consensus 184 v~el~~~l~~~ 194 (199)
T 2p5s_A 184 IVEAVLHLARE 194 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 33
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.6e-37 Score=204.11 Aligned_cols=164 Identities=31% Similarity=0.461 Sum_probs=147.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
++.+.++|+++|.+|+|||||++++.+..+...+.++.+..+. .....++..+.+.+||+||++.+...+..++.++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 4567899999999999999999999999887777788776655 556678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
+++|||++++++++.+..|+..+... ...+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999999999888554 34689999999999998878888899999999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|.+.
T Consensus 164 ~~l~~~ 169 (181)
T 2fn4_A 164 EQLVRA 169 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 34
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=5.6e-38 Score=205.88 Aligned_cols=164 Identities=32% Similarity=0.468 Sum_probs=145.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC-eEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
..+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++ ..+.+.+||+||++.+...+..++.++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999999888777778887777777777776 67899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCe-EEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERG--SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (170)
+++|||++++++++.+..|+..+..... .+.| +++|+||+|+.+.+.+..++++.+++..+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999888876432 2444 899999999987778888999999999999999999999999999
Q ss_pred HHHHHHhh
Q 030856 162 CSPTIRRL 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
+|++|.+.
T Consensus 163 l~~~l~~~ 170 (178)
T 2hxs_A 163 CFQKVAAE 170 (178)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 35
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=206.96 Aligned_cols=164 Identities=26% Similarity=0.390 Sum_probs=140.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
....+.+||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+|||||++.+... ..++.++|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3456789999999999999999999999988877788877555 445667888899999999999988775 67899999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeec-CCCCCh
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA-KAGFNI 159 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~v 159 (170)
++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++++++++..++++++||| ++|.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 9999999999999999999999887764 258999999999999887888899999999999999999999 899999
Q ss_pred HHHHHHHHhh
Q 030856 160 KGCSPTIRRL 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|.+.
T Consensus 174 ~~lf~~l~~~ 183 (187)
T 3c5c_A 174 QHVFHEAVRE 183 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 36
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=210.88 Aligned_cols=163 Identities=34% Similarity=0.649 Sum_probs=142.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45699999999999999999999999888777888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||+++.|++++|++|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777888889999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 171 ~~~ 173 (223)
T 3cpj_B 171 INT 173 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 37
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.3e-37 Score=200.14 Aligned_cols=161 Identities=30% Similarity=0.515 Sum_probs=143.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
++++|+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 579999999999999999999999888777777777544 3555677788899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~ 165 (170)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.+++.. +++++++||++|.|+++++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999998887754 368999999999999887888889999999988 789999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 161 l~~~ 164 (167)
T 1c1y_A 161 LVRQ 164 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=8.1e-37 Score=200.17 Aligned_cols=163 Identities=38% Similarity=0.612 Sum_probs=144.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCcccCHHHHHHHHH-hcCCeEEEeecCCCCChH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~ 160 (170)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..++++.+++ ..+++++++||++|.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999999877654 678999999999987 56677888899988 667899999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|++|.+.
T Consensus 163 ~l~~~l~~~ 171 (177)
T 1wms_A 163 AAFEEAVRR 171 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 39
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.8e-37 Score=200.95 Aligned_cols=161 Identities=26% Similarity=0.374 Sum_probs=131.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-hhhhhhcCCcEEEE
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVV 87 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~ 87 (170)
.+||+++|++|+|||||++++.+........++.+.+........++..+.+.+||+||.+.+.. ....++.++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998776655556666677777788889999999999999988876 67778899999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999887764 489999999999998888899999999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 162 ~~~ 164 (169)
T 3q85_A 162 VRQ 164 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-37 Score=204.64 Aligned_cols=167 Identities=26% Similarity=0.436 Sum_probs=146.0
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|++++..+.++|+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++.
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 88 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 88 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence 4455556789999999999999999999999988777777776444 445667778889999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-
Q 030856 81 DSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV- 146 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~- 146 (170)
++|++++|||++++++++.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++..++
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 999999999999999999987 7888887764 58999999999999753 46778999999999998
Q ss_pred eEEEeecCCCCChHHHHHHHHhh
Q 030856 147 MFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 147 ~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
++++|||++|.|++++|++|.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999875
No 41
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.7e-37 Score=208.43 Aligned_cols=164 Identities=27% Similarity=0.463 Sum_probs=142.9
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
....+.+||+++|.+|+|||||++++.++.+...+.++.+.++ ......++..+.+.+||++|++.+..++..++.++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3456789999999999999999999999998888888887665 455667778889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEE
Q 030856 84 VAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFI 149 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~ 149 (170)
++|+|||++++++++. +..|+..+.... ++.|+++|+||+|+.+. +.+..++++.+++.+++ +++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999 689999888775 68999999999999753 67889999999999999 999
Q ss_pred EeecCCCCC-hHHHHHHHHhh
Q 030856 150 ETSAKAGFN-IKGCSPTIRRL 169 (170)
Q Consensus 150 ~~S~~~~~~-v~~~~~~l~~~ 169 (170)
+|||++|.| ++++|++|.+.
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHH
T ss_pred EeccCCCcccHHHHHHHHHHH
Confidence 999999998 99999999874
No 42
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-37 Score=204.68 Aligned_cols=166 Identities=33% Similarity=0.451 Sum_probs=143.6
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcC
Q 030856 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (170)
Q Consensus 2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 81 (170)
..+...+.++|+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||.+. ...+..++..
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 98 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRW 98 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence 345567789999999999999999999999988777777777544 44566788889999999999887 7788889999
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC-Ch
Q 030856 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NI 159 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~v 159 (170)
+|++++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++++.+++..++++++|||++|. |+
T Consensus 99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI 178 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence 9999999999999999999999988877543 689999999999998878888899999999999999999999999 99
Q ss_pred HHHHHHHHhh
Q 030856 160 KGCSPTIRRL 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|.+.
T Consensus 179 ~~l~~~l~~~ 188 (196)
T 2atv_A 179 TEIFYELCRE 188 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 43
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.1e-37 Score=198.58 Aligned_cols=162 Identities=33% Similarity=0.556 Sum_probs=142.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
++.++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||.+.+...+..++.++|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 4579999999999999999999999888777777766444 344567788889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+++..++++.+++..+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999887664 58999999999999887788889999999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 161 l~~~ 164 (168)
T 1u8z_A 161 LMRE 164 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 44
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.6e-36 Score=202.90 Aligned_cols=163 Identities=37% Similarity=0.646 Sum_probs=144.5
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeE--------------------------
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-------------------------- 57 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 57 (170)
|+..+.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 345678999999999999999999999998887888888877777776666544
Q ss_pred -----------EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856 58 -----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 58 -----------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~ 126 (170)
..+.+||+||++.+......++..+|++++|||++++.+++.+..|+..+.... +.|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-
Confidence 789999999999999999999999999999999999999999999999988765 399999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
...+.+..++++++++..+++++++||++|.|++++|++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 5667788899999999999999999999999999999999875
No 45
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=208.47 Aligned_cols=165 Identities=32% Similarity=0.449 Sum_probs=141.3
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
++..+.+||+++|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+|||||.+.+...+..++.++|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 4456789999999999999999999999988877778877655 555556667789999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (170)
++++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++++.+++..+++++++||++|.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999998876543 57899999999999888889999999999999999999999999999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
|++|.+.
T Consensus 178 ~~~l~~~ 184 (201)
T 3oes_A 178 FTKVIQE 184 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 46
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.1e-37 Score=208.46 Aligned_cols=164 Identities=38% Similarity=0.637 Sum_probs=146.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe----------EEEEEEEecCChhhhhhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSLI 75 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~ 75 (170)
..+.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++. .+.+.+||+||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 355799999999999999999999998887777888887777777666655 7889999999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC
Q 030856 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154 (170)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 154 (170)
..++..+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++++++...++++++|||+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 181 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence 9999999999999999999999999999887766544 679999999999998877888899999999999999999999
Q ss_pred CCCChHHHHHHHHhh
Q 030856 155 AGFNIKGCSPTIRRL 169 (170)
Q Consensus 155 ~~~~v~~~~~~l~~~ 169 (170)
++.|++++|++|.+.
T Consensus 182 ~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 182 TGQNVEKAVETLLDL 196 (217)
T ss_dssp TTBTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999875
No 47
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-36 Score=201.92 Aligned_cols=162 Identities=39% Similarity=0.682 Sum_probs=147.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++..+++..+++++++||+++.|++++|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998877543 579999999999984 4567788899999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 172 l~~~ 175 (195)
T 1x3s_A 172 LVEK 175 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 48
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9.8e-37 Score=201.29 Aligned_cols=159 Identities=19% Similarity=0.336 Sum_probs=139.0
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
+...+.+||+++|++|+|||||++++.++.+...+.++.+ .+ ...+.+++..+.+.+|||+|++.+. ++.++|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 3456789999999999999999999999988777767633 33 4677788889999999999988766 778899
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCcccCHHHHHHHHHhcC-CeEEEeecCCCCCh
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRELN-VMFIETSAKAGFNI 159 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v 159 (170)
++++|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++++.++..++ +++++|||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987654 579999999999984 567788899999999997 89999999999999
Q ss_pred HHHHHHHHhh
Q 030856 160 KGCSPTIRRL 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|.+.
T Consensus 168 ~~lf~~l~~~ 177 (184)
T 3ihw_A 168 ERVFQDVAQK 177 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 49
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.4e-36 Score=202.06 Aligned_cols=162 Identities=31% Similarity=0.479 Sum_probs=143.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.+||+++|.+|+|||||++++.+..+...+.++.+..+. .....++..+.+.+|||||++.+...+..++.++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 356799999999999999999999999988788888876555 4566788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC--cccCHHHHHHHHHhcCCe-EEEeecCCCCChHH
Q 030856 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELNVM-FIETSAKAGFNIKG 161 (170)
Q Consensus 86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~ 161 (170)
++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+... +.+..++++.+++..++. ++++||++|.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999997 77877777654 68999999999998753 678889999999999997 99999999999999
Q ss_pred HHHHHHhh
Q 030856 162 CSPTIRRL 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
+|++|.+.
T Consensus 178 l~~~l~~~ 185 (194)
T 3reg_A 178 VFEKSVDC 185 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-36 Score=204.31 Aligned_cols=162 Identities=41% Similarity=0.726 Sum_probs=147.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999888788888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++++.++...+++++++||+++.|++++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999998877678999999999998 556677888899999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 177 ~~~ 179 (213)
T 3cph_A 177 AKL 179 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=5.7e-37 Score=198.84 Aligned_cols=161 Identities=34% Similarity=0.511 Sum_probs=144.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
++++|+++|++|+|||||++++.++.+...+.++.+. ........++....+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 5699999999999999999999998887776676653 335666778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+++..++++.+++..+++++++||++|.|+++++++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999999988877654 689999999999998778888899999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 161 ~~~ 163 (167)
T 1kao_A 161 VRQ 163 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 52
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=202.44 Aligned_cols=164 Identities=32% Similarity=0.555 Sum_probs=146.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
+..+.++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||.+.+...+..++..+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345679999999999999999999999888777777776444 4556678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+++..++++.++..++++++++||++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887654 589999999999998878888899999999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|.+.
T Consensus 169 ~~l~~~ 174 (206)
T 2bov_A 169 FDLMRE 174 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 53
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=198.36 Aligned_cols=162 Identities=33% Similarity=0.440 Sum_probs=132.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--hhhhhhhhhcCCcE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV 84 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~ 84 (170)
.+.++|+++|++|+|||||++++.+......+ ++.+.+........++..+.+.+||+||.+. +......++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 45799999999999999999999988765432 3455566666777888888999999999887 56677788899999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887653 3579999999999998888888889999999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|.+.
T Consensus 161 ~~l~~~ 166 (175)
T 2nzj_A 161 EGVVRQ 166 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 54
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.6e-36 Score=203.44 Aligned_cols=167 Identities=40% Similarity=0.656 Sum_probs=145.6
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|.. ...+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (207)
T 1vg8_A 1 MTS-RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79 (207)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT
T ss_pred CCc-ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh
Confidence 444 3567899999999999999999999999888888888888888888888888899999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCcccCHHHHHHHHH-hcCCeEEEeecCC
Q 030856 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKA 155 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~ 155 (170)
++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..++++.++. ..+++++++||++
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 99999999999999999999999998877653 478999999999987 55667788888887 6778999999999
Q ss_pred CCChHHHHHHHHhh
Q 030856 156 GFNIKGCSPTIRRL 169 (170)
Q Consensus 156 ~~~v~~~~~~l~~~ 169 (170)
|.|++++|++|.+.
T Consensus 159 g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 159 AINVEQAFQTIARN 172 (207)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999875
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2e-36 Score=199.79 Aligned_cols=164 Identities=32% Similarity=0.555 Sum_probs=144.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
...+.+||+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345679999999999999999999999888777777766444 4455677888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++.++++++++||+++.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999999887664 589999999999998877888899999999999999999999999999999
Q ss_pred HHHHhh
Q 030856 164 PTIRRL 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|.+.
T Consensus 173 ~~l~~~ 178 (187)
T 2a9k_A 173 FDLMRE 178 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=6.7e-37 Score=201.24 Aligned_cols=168 Identities=38% Similarity=0.607 Sum_probs=131.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhh
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYI 79 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~ 79 (170)
|+. ...+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..+ +....+.+||+||++.+...+..++
T Consensus 1 Ms~-~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 79 (182)
T 1ky3_A 1 MSS-RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY 79 (182)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCS
T ss_pred CCc-ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHh
Confidence 443 44678999999999999999999999998887888888877777777666 5567899999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCC-CcccCHHHHHHHHH-hcCCeEEEeec
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSA 153 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~ 153 (170)
.++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++++.++. ..+++++++||
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEec
Confidence 999999999999999999999999998877653 6799999999999853 45567888888888 56789999999
Q ss_pred CCCCChHHHHHHHHhh
Q 030856 154 KAGFNIKGCSPTIRRL 169 (170)
Q Consensus 154 ~~~~~v~~~~~~l~~~ 169 (170)
++|.|++++|++|.+.
T Consensus 160 ~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 160 KNAINVDTAFEEIARS 175 (182)
T ss_dssp TTTBSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999875
No 57
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.6e-36 Score=196.85 Aligned_cols=160 Identities=30% Similarity=0.421 Sum_probs=120.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
+.+||+++|++|+|||||++++.+.... ...++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 3589999999999999999999876553 2233333333 4556678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 999999999999999999887753 3689999999999998888899999999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 159 ~~~ 161 (166)
T 3q72_A 159 VRQ 161 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 58
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.5e-36 Score=198.10 Aligned_cols=159 Identities=20% Similarity=0.358 Sum_probs=134.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
|...+.+||+++|++|+|||||++++.++.+.. +.++.+.. ....+..++..+.+.+||+||++. ..+++++|
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 345678999999999999999999999988765 66776633 356667788889999999999875 46788899
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCC--CCcccCHHHHHHHHHhc-CCeEEEeecCCCC
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGF 157 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~ 157 (170)
++++|||++++++++.+..|+..+.... .++.|+++|+||+|+. ..+.+..+++++++... +++++++||++|.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 9999999999999999999766655443 3689999999999984 45678889999999886 6899999999999
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|++++|++|.+.
T Consensus 155 ~i~~lf~~l~~~ 166 (178)
T 2iwr_A 155 NVDRVFQEVAQK 166 (178)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 59
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.2e-37 Score=207.66 Aligned_cols=163 Identities=28% Similarity=0.466 Sum_probs=109.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCCccceeeeeeeEEEEEeCCe--EEEEEEEecCChhhhhhhhhhhhcCC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS 82 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 82 (170)
...++|+++|++|+|||||++++.+. .+...+.++.+.++....+..++. .+.+.+||+||.+.+...+..++.++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 666777788877777777777776 88999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCC-CcccCHHHHHHHHHhcCCeEEEeecCC-CC
Q 030856 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSRELNVMFIETSAKA-GF 157 (170)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~-~~ 157 (170)
|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++++.+++.++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988775 6899999999999987 778888999999999999999999999 99
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|++++|++|.+.
T Consensus 178 gi~~l~~~i~~~ 189 (208)
T 2yc2_C 178 DADAPFLSIATT 189 (208)
T ss_dssp --CHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999874
No 60
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-36 Score=203.04 Aligned_cols=164 Identities=29% Similarity=0.413 Sum_probs=136.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-hhhhhhhhhcCCc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS 83 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d 83 (170)
....+||+++|.+|||||||++++.+.... ....++.+.++....+.+++..+.+.+|||+|.+. +..+...++..+|
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 456799999999999999999999964331 22234466666677777888889999999999876 4556677788999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (170)
++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++++.++..+++++++|||++|.|++++
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999988776542 357999999999999877888888888999999999999999999999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
|++|++.
T Consensus 194 f~~l~~~ 200 (211)
T 2g3y_A 194 FEGIVRQ 200 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 61
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-36 Score=195.11 Aligned_cols=162 Identities=29% Similarity=0.461 Sum_probs=141.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
+.++|+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||.+.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999887766667766444 3445567778899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
|||++++++++.+..|+..+..... ++.|+++|+||+|+...+++..++++.++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999999888776543 57999999999999887888888899999999999999999999999999999
Q ss_pred HHhhC
Q 030856 166 IRRLI 170 (170)
Q Consensus 166 l~~~i 170 (170)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98753
No 62
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.1e-35 Score=196.62 Aligned_cols=161 Identities=30% Similarity=0.517 Sum_probs=140.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.++++|+++|++|+|||||++++.+..+...+.++.. +........++..+.+.+||+||++.+...+..++.++|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999888777666664 455566667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+. .+....+.++.+++..+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998877543 689999999999986 4566788899999999999999999999999999999
Q ss_pred HHhh
Q 030856 166 IRRL 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 160 l~~~ 163 (189)
T 4dsu_A 160 LVRE 163 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 63
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.5e-36 Score=198.58 Aligned_cols=162 Identities=24% Similarity=0.462 Sum_probs=140.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 46789999999999999999999999988777778777555 34556777888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcC-CeEEEe
Q 030856 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIET 151 (170)
Q Consensus 86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 151 (170)
++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..++++.+++.++ +++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 78888887654 58999999999998742 5678889999999988 699999
Q ss_pred ecC-CCCChHHHHHHHHhh
Q 030856 152 SAK-AGFNIKGCSPTIRRL 169 (170)
Q Consensus 152 S~~-~~~~v~~~~~~l~~~ 169 (170)
||+ ++.|++++|++|.+.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLA 180 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHHH
Confidence 999 689999999999875
No 64
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-36 Score=204.29 Aligned_cols=165 Identities=33% Similarity=0.527 Sum_probs=142.6
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCC
Q 030856 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (170)
Q Consensus 3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 82 (170)
.|...+.++|+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++.++
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 81 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence 45667889999999999999999999999888777777776444 44566778889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--------cCHHHHHHHHHhcCC-eEEEee
Q 030856 83 SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--------VSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~S 152 (170)
|++++|||++++++++.+. .|+..+.... ++.|+++|+||+|+...+. +..++++.++..+++ +++++|
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 9999999999999999986 7888887765 5899999999999876544 377888999999996 999999
Q ss_pred cCCCCChHHHHHHHHhh
Q 030856 153 AKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~~ 169 (170)
|++|.|++++|++|.+.
T Consensus 161 a~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999864
No 65
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=7.5e-36 Score=196.92 Aligned_cols=161 Identities=30% Similarity=0.505 Sum_probs=141.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
++.++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 5679999999999999999999999888777777766433 455667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEee
Q 030856 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 152 (170)
+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++..++ ++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 7888887765 48999999999998653 56778889999999997 999999
Q ss_pred cCCCCChHHHHHHHHhh
Q 030856 153 AKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~~ 169 (170)
|++|.|++++|++|.+.
T Consensus 161 a~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHH
Confidence 99999999999999875
No 66
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=8.1e-36 Score=199.27 Aligned_cols=163 Identities=33% Similarity=0.487 Sum_probs=134.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
...+.++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||.+.+...+..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345689999999999999999999999887777777776443 4556678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEE
Q 030856 85 AVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIE 150 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 150 (170)
+++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.. .+.+..+++..++...++ ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999996 7888887765 5899999999999875 356778899999999998 9999
Q ss_pred eecCCCCChHHHHHHHHhh
Q 030856 151 TSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~ 169 (170)
|||++|.|++++|++|.+.
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHH
Confidence 9999999999999999864
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-36 Score=201.55 Aligned_cols=162 Identities=24% Similarity=0.464 Sum_probs=141.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++.++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 35679999999999999999999999988877778877555 34556677888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcC-CeEEEe
Q 030856 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIET 151 (170)
Q Consensus 86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 151 (170)
|+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..++++.+++.++ +++++|
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 78888887664 5899999999999864 25678889999999988 699999
Q ss_pred ecC-CCCChHHHHHHHHhh
Q 030856 152 SAK-AGFNIKGCSPTIRRL 169 (170)
Q Consensus 152 S~~-~~~~v~~~~~~l~~~ 169 (170)
||+ ++.|++++|++|.+.
T Consensus 183 SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLA 201 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHH
Confidence 999 689999999999875
No 68
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.4e-36 Score=204.25 Aligned_cols=164 Identities=29% Similarity=0.467 Sum_probs=142.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
....+||+++|.+|+|||||++++.++.+...+.++.+........... +..+.+.+|||||.+.+...+..++.++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4567999999999999999999999988877777777766666665444 344889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (170)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+.+..++...+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999999999888777799999999999988778888999999999999999999999999999999
Q ss_pred HHHhh
Q 030856 165 TIRRL 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
+|.+.
T Consensus 168 ~l~~~ 172 (218)
T 4djt_A 168 HLARI 172 (218)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 69
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.8e-35 Score=195.91 Aligned_cols=164 Identities=29% Similarity=0.500 Sum_probs=131.8
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
.+.++.++|+++|.+|+|||||++++.++.+...+.++.+.. .......++..+.+.+||+||.+.+...+..++..+|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 345678999999999999999999999988776666666533 3455667788889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (170)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++++++++..+++++++||+++.|++++
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999988877654 5799999999999866 566788999999999999999999999999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
+++|.+.
T Consensus 174 ~~~l~~~ 180 (190)
T 3con_A 174 FYTLVRE 180 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 70
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=212.71 Aligned_cols=164 Identities=39% Similarity=0.669 Sum_probs=140.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999977766789999999999998877777778889999999999999999999999999999
Q ss_pred HhhC
Q 030856 167 RRLI 170 (170)
Q Consensus 167 ~~~i 170 (170)
.+.+
T Consensus 191 ~~~l 194 (199)
T 3l0i_B 191 AAEI 194 (199)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 8754
No 71
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=1.2e-35 Score=198.96 Aligned_cols=163 Identities=30% Similarity=0.487 Sum_probs=139.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.+||+++|.+|+|||||++++.+..+...+.++.+ +........++..+.+.+|||||.+.+...+..++.++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35679999999999999999999999888777777765 44555666778888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhcCC-eEEEe
Q 030856 86 VVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIET 151 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 151 (170)
++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+...+ .+..+++..+++..++ ++++|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999997 7888887765 689999999999987653 3778889999999997 69999
Q ss_pred ecCCCCChHHHHHHHHhhC
Q 030856 152 SAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 152 S~~~~~~v~~~~~~l~~~i 170 (170)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998864
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.8e-35 Score=196.80 Aligned_cols=161 Identities=32% Similarity=0.530 Sum_probs=141.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
..++||+++|.+|+|||||++++.+..+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45799999999999999999999999888777777775554 34567788889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEee
Q 030856 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 152 (170)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..++++.+++..++ ++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 67877776654 58999999999999765 45778889999999998 999999
Q ss_pred cCCCCChHHHHHHHHhh
Q 030856 153 AKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~~ 169 (170)
|++|.|++++|++|.+.
T Consensus 181 A~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 181 AKTKEGVREVFEMATRA 197 (201)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999875
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=5.6e-35 Score=189.17 Aligned_cols=160 Identities=29% Similarity=0.495 Sum_probs=140.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
+.++|+++|++|+|||||++++.+......+.++.+.. .......++..+.+.+||+||.+.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 46899999999999999999999988776666666533 34555677888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++++++++..+++++++||++|.|+++++++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998877654 4799999999999876 5667888999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 160 ~~~ 162 (166)
T 2ce2_X 160 VRE 162 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=200.48 Aligned_cols=161 Identities=30% Similarity=0.525 Sum_probs=121.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|.+|+|||||++++.+..+...+.++....+ ......++..+.+.+|||||++.+...+..++.++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4679999999999999999999999887777777765433 455667888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhcCC-eEEEee
Q 030856 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 152 (170)
+|||++++++++.+. .|+..+.... ++.|+++|+||+|+...+ .+..++++.+++..++ ++++||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 7888887654 679999999999997653 6777888999999998 999999
Q ss_pred cCCCCChHHHHHHHHhh
Q 030856 153 AKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~~ 169 (170)
|++|.|++++|++|.+.
T Consensus 190 A~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp TTTTBSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999875
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.5e-36 Score=199.77 Aligned_cols=164 Identities=35% Similarity=0.543 Sum_probs=126.2
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
+...+.+||+++|++|+|||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..++.++|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 44567899999999999999999999998877777777654332 23345566778899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcc----------cCHHHHHHHHHhcCC-eEEEe
Q 030856 84 VAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----------VSIEEGEAKSRELNV-MFIET 151 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 151 (170)
++++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+.+. +..++++.+++..++ ++++|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999997 6888887765 4899999999999876544 477888999999997 99999
Q ss_pred ecCCCCChHHHHHHHHhh
Q 030856 152 SAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 152 S~~~~~~v~~~~~~l~~~ 169 (170)
||++|.|++++|++|.+.
T Consensus 161 Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999875
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-35 Score=196.78 Aligned_cols=161 Identities=32% Similarity=0.536 Sum_probs=135.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
..++||+++|.+|+|||||++++.+..+...+.++.+..+.. ....++..+.+.+|||||++.+...+..++.++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 467899999999999999999999998877777777655543 3567788889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEee
Q 030856 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 152 (170)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+... +.+..+++..++...++ ++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67877777654 68999999999998754 45778888999999998 999999
Q ss_pred cCCCCChHHHHHHHHhh
Q 030856 153 AKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~~ 169 (170)
|++|.|++++|++|.+.
T Consensus 181 A~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 181 AKTKEGVREVFETATRA 197 (207)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999875
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=3.9e-36 Score=203.65 Aligned_cols=164 Identities=27% Similarity=0.525 Sum_probs=144.8
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCC
Q 030856 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (170)
Q Consensus 3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 82 (170)
+......+||+++|.+|+|||||+++++.+.+...+.++.+.+........++..+.+.+|||||++.+...+..++.++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34556789999999999999999999887776677778888888888888888899999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (170)
|++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.... .+...+++..++++++|||++|.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998875 58999999999998754432 3566778888999999999999999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
|++|.+.
T Consensus 166 ~~~l~~~ 172 (221)
T 3gj0_A 166 FLWLARK 172 (221)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.2e-35 Score=193.73 Aligned_cols=163 Identities=29% Similarity=0.472 Sum_probs=141.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
....++|+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++.++|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34679999999999999999999999888777777766443 34455677888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
++|||++++++++.+..|+..+..... ++.|+++|+||+|+.. +.+..++++.++..++++++++||++|.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999999988887766543 4789999999999865 5667788899999999999999999999999999
Q ss_pred HHHHhhC
Q 030856 164 PTIRRLI 170 (170)
Q Consensus 164 ~~l~~~i 170 (170)
++|.+.+
T Consensus 163 ~~l~~~~ 169 (199)
T 2gf0_A 163 QELLTLE 169 (199)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998753
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=5.5e-36 Score=199.28 Aligned_cols=161 Identities=23% Similarity=0.241 Sum_probs=134.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC-----------ccceeeeeeeEEEE-EeCCeEEEEEEEecCChhhhh
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-----------YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~ 72 (170)
...+.+||+++|++|+|||||++.+.+... .. +.++.+.++..... ..++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSC-GGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 445689999999999999999977765433 22 33466555555544 566778899999999999999
Q ss_pred hhhhhhhcCCcEEEEEEeCC------ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC
Q 030856 73 SLIPSYIRDSSVAVVVYDVA------SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV 146 (170)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (170)
..+..+++++|++|+|||++ +.++++.+..|+..+. ....+.|+++|+||+|+.+ .+..+++++++..+++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence 99999999999999999999 5677788888887773 2336899999999999865 3778899999999999
Q ss_pred -eEEEeecCCCCChHHHHHHHHhh
Q 030856 147 -MFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 147 -~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+++++||++|.|++++|++|.+.
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHH
Confidence 99999999999999999999875
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=7.1e-35 Score=193.55 Aligned_cols=162 Identities=30% Similarity=0.464 Sum_probs=133.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC--CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-hhhhhhhhhcCCc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS 83 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d 83 (170)
...+||+++|.+|||||||++++.+.. +... .++.+.++....+.+++..+.+.+|||+|... +..+...++..+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999999643 2233 33455566667777888888999999999776 4556777888999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856 84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (170)
++++|||++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++++.++..+++++++|||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988877653 357999999999999877778888888899999999999999999999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
|++|++.
T Consensus 163 f~~l~~~ 169 (192)
T 2cjw_A 163 FEGIVRQ 169 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=6.1e-35 Score=194.58 Aligned_cols=162 Identities=17% Similarity=0.247 Sum_probs=126.3
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCC
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 82 (170)
.+.....+|+++|.+|+|||||++++.+..+.. .+.++.+..... + ++..+.+.+|||||++.+...+..++.++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 455678999999999999999999999998876 677777744332 2 23457899999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--------CCCeEEEEEeCCCCCCCcccC---HHHH-HHHHHhcCCeEEE
Q 030856 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--------SDVIIVLVGNKTDLVEKRQVS---IEEG-EAKSRELNVMFIE 150 (170)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~vvv~nK~D~~~~~~~~---~~~~-~~~~~~~~~~~~~ 150 (170)
|++|+|||++++++|+.+..|+..+..... .+.|+++|+||+|+....... .... ..+++..++++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence 999999999999999999999888765421 379999999999997653221 1111 1112557789999
Q ss_pred eecCCCCChHHHHHHHHhh
Q 030856 151 TSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~ 169 (170)
|||++|.|++++|++|.+.
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~ 186 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQET 186 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHH
Confidence 9999999999999999875
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=5.7e-34 Score=190.04 Aligned_cols=157 Identities=21% Similarity=0.245 Sum_probs=123.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.. ...+..++ ..+.+|||||++.++..+..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45789999999999999999999987763 345555543 23444555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-----------------cCCeE
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----------------LNVMF 148 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 148 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++++++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999988886642 36799999999999865 5566777776653 34589
Q ss_pred EEeecCCCCChHHHHHHHHhhC
Q 030856 149 IETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~i 170 (170)
++|||++|.|++++|++|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998764
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=4.1e-33 Score=185.99 Aligned_cols=162 Identities=36% Similarity=0.679 Sum_probs=144.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
..++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46899999999999999999999998877777888777777788888988999999999999999889999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
|||++++.+++.+..|+..+......+.|+++++||+|+.+.+....++++.++...++.++++|++++.|+++++++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999998998888766556799999999999987777888889999999999999999999999999999998
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 164 ~~ 165 (199)
T 2f9l_A 164 TE 165 (199)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=1.4e-33 Score=187.08 Aligned_cols=157 Identities=23% Similarity=0.243 Sum_probs=128.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.. ...+..++ ..+.+|||||++.++..+..+++++|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988764 345555543 34445555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh------------cCCeEEEeec
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA 153 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S~ 153 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+.+.. .++++++|||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999988876542 36799999999999865 4556666666543 3568999999
Q ss_pred CCCCChHHHHHHHHhhC
Q 030856 154 KAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 154 ~~~~~v~~~~~~l~~~i 170 (170)
++|.|++++|++|.+.|
T Consensus 174 ~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CcCCCHHHHHHHHHhhC
Confidence 99999999999999865
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=1.2e-34 Score=191.82 Aligned_cols=159 Identities=23% Similarity=0.318 Sum_probs=128.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.++|+++|.+|+|||||++++.++.+...+.++.+.++.. +.. ..+.+.+||+||++.+...+..++.++|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3457999999999999999999999988877777777766543 222 347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCCh
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNI 159 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v 159 (170)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...++++++|||++|.|+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 99999999999999999988876543 2689999999999986532 222222221 123568999999999999
Q ss_pred HHHHHHHHhhC
Q 030856 160 KGCSPTIRRLI 170 (170)
Q Consensus 160 ~~~~~~l~~~i 170 (170)
+++|++|.+.+
T Consensus 173 ~~l~~~l~~~~ 183 (188)
T 1zd9_A 173 DITLQWLIQHS 183 (188)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=185.94 Aligned_cols=159 Identities=19% Similarity=0.277 Sum_probs=128.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC-CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
..+.++|+++|.+|+|||||++++.+.. ....+.++.+. ....+..++ ..+.+|||||++.+...+..++.++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4568999999999999999999999887 45556666653 333444444 689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCC
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAG 156 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~ 156 (170)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+. ...++..+... ..++++++|||++|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999999888877543 57999999999999653 34455555553 23679999999999
Q ss_pred CChHHHHHHHHhhC
Q 030856 157 FNIKGCSPTIRRLI 170 (170)
Q Consensus 157 ~~v~~~~~~l~~~i 170 (170)
.|++++|++|.+.+
T Consensus 172 ~gi~~l~~~l~~~i 185 (190)
T 2h57_A 172 EGLQEGVDWLQDQI 185 (190)
T ss_dssp BTHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998764
No 87
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=100.00 E-value=5.7e-33 Score=184.24 Aligned_cols=163 Identities=35% Similarity=0.661 Sum_probs=148.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
...++|+++|++|||||||++++.+...+..+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45689999999999999999999999888888889888888888888998889999999999999899999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (170)
+|||.++..+++.+..|+..+......+.|+++++||+|+.+.+....+.++.++...++.++++|++++.++++++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999889888776655678999999999998777778889999999999999999999999999999999
Q ss_pred Hhh
Q 030856 167 RRL 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 187 ~~~ 189 (191)
T 1oix_A 187 LTE 189 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=1.5e-34 Score=187.13 Aligned_cols=154 Identities=21% Similarity=0.341 Sum_probs=121.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+.. +.|+.+.. ...+.. ..+.+.+||+||++.+...+..++.++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 45555522 223333 3468999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHH-----HHhcCCeEEEeecCCCCChHHHH
Q 030856 90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~~ 163 (170)
|++++++++.+..|+..+.... .++.|+++|+||+|+.+... .++.... ++..++++++|||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999999988876542 36899999999999965422 2222221 22245689999999999999999
Q ss_pred HHHHhhC
Q 030856 164 PTIRRLI 170 (170)
Q Consensus 164 ~~l~~~i 170 (170)
++|.+.+
T Consensus 154 ~~l~~~i 160 (164)
T 1r8s_A 154 DWLSNQL 160 (164)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998764
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=2e-34 Score=191.41 Aligned_cols=158 Identities=20% Similarity=0.340 Sum_probs=119.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.++|+++|++|+|||||++++..+.+. .+.|+.+.. ...+... .+.+.+||+||.+.+...+..++.++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 457899999999999999999999987764 344555422 2333333 37899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHH-----HHhcCCeEEEeecCCCCCh
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v 159 (170)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+... .++.... +...++++++|||++|.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999988876543 25799999999999865422 2222221 2234568999999999999
Q ss_pred HHHHHHHHhhC
Q 030856 160 KGCSPTIRRLI 170 (170)
Q Consensus 160 ~~~~~~l~~~i 170 (170)
+++|++|.+.+
T Consensus 179 ~~l~~~l~~~i 189 (192)
T 2b6h_A 179 YDGLDWLSHEL 189 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=6.2e-34 Score=185.38 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=124.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++.++.+. .+.++.+... ..+..+ ...+.+||+||.+.+...+..++.++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45799999999999999999999988764 3455555333 333344 468999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHH-----HHHHhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.... ++.. ..+...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH--HHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 99999999999999888887765432 68999999999999764322 2222 2233456789999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|++|.+.
T Consensus 158 ~l~~~l~~~ 166 (171)
T 1upt_A 158 EAMEWLVET 166 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=4.4e-33 Score=183.87 Aligned_cols=156 Identities=22% Similarity=0.314 Sum_probs=126.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++.++. ...+.++.+... ..+..+ ...+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999887 666677766443 333344 368999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+... .++..+.. ...+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999999988876643 36799999999999966433 33333322 2346799999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 169 ~l~~~l~~~ 177 (186)
T 1ksh_A 169 PGIDWLLDD 177 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=1.3e-33 Score=185.83 Aligned_cols=159 Identities=19% Similarity=0.296 Sum_probs=125.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 84 (170)
...+.++|+++|.+|+|||||++++.++.+ ..+.++.+... ..+..++ ..+.+||+||.+.+...+..++.++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 345789999999999999999999998877 44455555333 3333444 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCC
Q 030856 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN 158 (170)
Q Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~ 158 (170)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+... ...++..+.. ...++++++|||++|.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999999988876643 367999999999998653 2334443333 23456899999999999
Q ss_pred hHHHHHHHHhhC
Q 030856 159 IKGCSPTIRRLI 170 (170)
Q Consensus 159 v~~~~~~l~~~i 170 (170)
++++|++|.+.+
T Consensus 170 i~~l~~~l~~~l 181 (181)
T 2h17_A 170 LCQGLEWMMSRL 181 (181)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=100.00 E-value=3.9e-34 Score=188.79 Aligned_cols=160 Identities=22% Similarity=0.371 Sum_probs=123.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC--CCCCCccceeeeeeeEEEEEe---CCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 83 (170)
++||+++|++|||||||++++.+. .+...+.++.+.++....... ++..+.+.+||++|++.+..+...++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 344556777777776655443 235678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCe----EEEeecCC
Q 030856 84 VAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSRELNVM----FIETSAKA 155 (170)
Q Consensus 84 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~S~~~ 155 (170)
++++|||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+.+.+. .+..+.+++..+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 57999999999887654 579999999999987654432 34456677777886 99999999
Q ss_pred CC-ChHHHHHHHHhh
Q 030856 156 GF-NIKGCSPTIRRL 169 (170)
Q Consensus 156 ~~-~v~~~~~~l~~~ 169 (170)
+. +++++++.|.+.
T Consensus 161 ~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 161 ESDALAKLRKTIINE 175 (184)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 97 999999998764
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=100.00 E-value=9.9e-34 Score=188.59 Aligned_cols=162 Identities=17% Similarity=0.211 Sum_probs=124.6
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEE--EEEe-CCeEEEEEEEecCChhhhhhhh---hh
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK--TMYL-EDRTVRLQLWDTAGQERFRSLI---PS 77 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~ 77 (170)
.+..+.+||+++|.+|||||||++++.+..... ++.+.++... ...+ ++..+.+.+||+||++.+.... ..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 455678999999999999999999888754322 2333232222 2223 2556789999999999987776 89
Q ss_pred hhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------CcccCHHHHHHHHH----hc
Q 030856 78 YIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------KRQVSIEEGEAKSR----EL 144 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~-------~~~~~~~~~~~~~~----~~ 144 (170)
+++++|++|+|||++++ +++..+..|+..+... .++.|+++|+||+|+.. .+.+..+.++.+++ ..
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 99999999999999997 6777778887776543 36899999999999754 34566667788888 67
Q ss_pred CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 145 NVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 145 ~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
++++++|||++ .|++++|+.|++.|
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 88999999999 99999999999864
No 95
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-33 Score=183.92 Aligned_cols=156 Identities=20% Similarity=0.292 Sum_probs=123.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|.+|+|||||++++.++.+. .+.++.+.. ...+..++ ..+.+||+||.+.+...+..++.++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 56799999999999999999999987765 555555533 23333444 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.. +..++++++|||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998887653 267999999999998653 2334444333 2346799999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 167 ~l~~~l~~~ 175 (187)
T 1zj6_A 167 QGLEWMMSR 175 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=3.1e-33 Score=184.05 Aligned_cols=157 Identities=22% Similarity=0.350 Sum_probs=124.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++.+... ..+.++.+.. ...+..+ .+.+.+||+||++.+...+..++.++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 5679999999999999999999998754 3345555533 2333344 368999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+... .++..+.. ...++++++|||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999999998888775542 36799999999999876443 23332221 2345689999999999999
Q ss_pred HHHHHHHhhC
Q 030856 161 GCSPTIRRLI 170 (170)
Q Consensus 161 ~~~~~l~~~i 170 (170)
++|++|.+.+
T Consensus 167 ~l~~~l~~~~ 176 (181)
T 1fzq_A 167 DGMNWVCKNV 176 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=2.4e-32 Score=195.08 Aligned_cols=160 Identities=29% Similarity=0.469 Sum_probs=141.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
..++|+++|.+|+|||||++++.++.+...+.++.+. .....+..++..+.+.+||+||.+.+......++.++|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4689999999999999999999998887777777764 345556778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeec
Q 030856 88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSA 153 (170)
Q Consensus 88 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 153 (170)
|||++++.+++.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++..++ ++++|||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999986 7888777665 48999999999998653 56788999999999998 9999999
Q ss_pred CCCCChHHHHHHHHhh
Q 030856 154 KAGFNIKGCSPTIRRL 169 (170)
Q Consensus 154 ~~~~~v~~~~~~l~~~ 169 (170)
++|.|++++|++|.+.
T Consensus 312 ~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRA 327 (332)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH
Confidence 9999999999999875
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=199.21 Aligned_cols=162 Identities=30% Similarity=0.492 Sum_probs=137.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|.+|+|||||++++.+..+...+.++.+.. .......++..+.+.+|||||++.+...+..++.++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 567999999999999999999999888776666666533 3444556677788999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhcCC-eEEEee
Q 030856 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 152 (170)
+|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+.+ .+..+++..+++..++ ++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999986 7877776654 479999999999987543 5566778888888898 999999
Q ss_pred cCCCCChHHHHHHHHhhC
Q 030856 153 AKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~~i 170 (170)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998753
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=8.5e-34 Score=187.79 Aligned_cols=156 Identities=21% Similarity=0.299 Sum_probs=123.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.++++|+++|++|+|||||++++..+.+. .+.++.+.. ...+..+ ...+.+|||||++.+...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 56899999999999999999999877654 344555432 2333343 368999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHH-----HHHhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+... .++... .+...++++++|||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988888776543 26899999999999965432 222222 223345689999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 173 ~l~~~l~~~ 181 (189)
T 2x77_A 173 EGMDWLVER 181 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-33 Score=183.66 Aligned_cols=156 Identities=22% Similarity=0.342 Sum_probs=121.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|++|+|||||++++.++.. ..+.++.+.. ......++ ..+.+||+||.+.+...+..++.++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 6789999999999999999999997766 4445555533 23333443 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+... ..++++++|||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999988887654 368999999999998653 23344433332 234589999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 169 ~l~~~l~~~ 177 (183)
T 1moz_A 169 EGLDWLIDV 177 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=100.00 E-value=9.2e-32 Score=174.52 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=116.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh------hhhhhhhc-
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR- 80 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 80 (170)
+.++|+++|++|+|||||++++.+........++.+.+.....+..++ ..+.+|||||+..+. .+...++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 468999999999999999999998766555455555555555555554 579999999988764 33455554
Q ss_pred -CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 81 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
++|++++++|.++.+. ...|+..+.. .+.|+++|+||+|+...+.+.. +++.+++..+++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999987543 3446666554 3689999999999865444432 467788888999999999999999
Q ss_pred HHHHHHHHhhC
Q 030856 160 KGCSPTIRRLI 170 (170)
Q Consensus 160 ~~~~~~l~~~i 170 (170)
+++|++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.98 E-value=4.7e-32 Score=182.66 Aligned_cols=162 Identities=20% Similarity=0.303 Sum_probs=115.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe-EEEEEEEecCChhhhhh-hhhhhhcCCc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSS 83 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d 83 (170)
..+.++|+++|++|+|||||++++.+..+...+.++ ..+... +.+++. .+.+.+|||||++.+.. ++..++.++|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 346799999999999999999999998877665433 333333 444443 57899999999999988 7888999999
Q ss_pred EEEEEEeCCChh-hHHhHHHHHHHHHHh---cCCCCeEEEEEeCCCCCCCcccCH--HHHHH------------------
Q 030856 84 VAVVVYDVASRQ-SFLNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVSI--EEGEA------------------ 139 (170)
Q Consensus 84 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~---~~~~~~~vvv~nK~D~~~~~~~~~--~~~~~------------------ 139 (170)
++++|||+++.+ ++.....++..+... ...+.|+++|+||+|+...+.... +....
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999853 455555544443322 235799999999999976543210 11111
Q ss_pred --------------HHH-hc--CCeEEEeecCCC------CChHHHHHHHHhhC
Q 030856 140 --------------KSR-EL--NVMFIETSAKAG------FNIKGCSPTIRRLI 170 (170)
Q Consensus 140 --------------~~~-~~--~~~~~~~S~~~~------~~v~~~~~~l~~~i 170 (170)
++. .. +++|++|||++| .|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 111 11 668999999999 99999999999864
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.98 E-value=4.2e-33 Score=192.40 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=123.9
Q ss_pred CCCCCceeEEEEcCC---------CCCHHHHHHHHhc---CCCCCCcccee-eeeeeEEEE--------------EeCCe
Q 030856 4 VSALAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDNTYQATI-GIDFLSKTM--------------YLEDR 56 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~---------~~GKStll~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~ 56 (170)
....+.+||+++|.+ |||||||++++.+ ..+...+.++. +.++....+ ..++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 445677999999999 9999999999998 44555555554 333322211 13456
Q ss_pred EEEEEEEe-----------------------cCChhhhhhhhhhhhc---------------------CCcEEEEEEeCC
Q 030856 57 TVRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVVVYDVA 92 (170)
Q Consensus 57 ~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~ 92 (170)
.+.+.+|| ++|++.+..++..++. ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 6666666666667766 799999999999
Q ss_pred Ch--hhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-cCCeEEEeecCCCCChHHHHHHHHh
Q 030856 93 SR--QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 93 ~~--~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
++ ++++.+..|+..+... ...+.|+++|+||+|+...+.+ ++++.++.. .++++++|||++|.|++++|++|.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 9999999999988765 3367999999999998665544 577778876 4889999999999999999999987
Q ss_pred h
Q 030856 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 252 ~ 252 (255)
T 3c5h_A 252 L 252 (255)
T ss_dssp H
T ss_pred H
Confidence 5
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.97 E-value=7e-31 Score=185.64 Aligned_cols=158 Identities=22% Similarity=0.308 Sum_probs=126.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-----hhhhhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYI 79 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 79 (170)
..+||+++|.+|+|||||++++.++... ..+.+|.+..... ....+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987433 2344555554443 33333 578999999999988 67888899
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCC--Ccc----cCHHHHHHHHHhcC---CeE
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVE--KRQ----VSIEEGEAKSRELN---VMF 148 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 148 (170)
+++|++|+|||++++++++.+..|...+.... .++.|+++|+||+|+.+ .+. +..++++++++.+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877755443321 36899999999999876 444 56688899999987 799
Q ss_pred EEeecCCCCChHHHHHHHHhh
Q 030856 149 IETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+++||++ .++.++|..+++.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHT
T ss_pred EEeeecC-ChHHHHHHHHHHH
Confidence 9999999 8999999888764
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.97 E-value=1.8e-30 Score=176.60 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=113.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh------hh---hhhhhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE------RF---RSLIPS 77 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~---~~~~~~ 77 (170)
.+.++|+++|.+|+|||||++++.+..+.....+..+.+.........+ ..+.+|||||.. .. ......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 5679999999999999999999998766422222223233333333333 679999999983 21 122344
Q ss_pred hhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH---HHHHHHHhcC--CeEEE
Q 030856 78 YIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELN--VMFIE 150 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 150 (170)
++..+|++++|||++++.+++. ...|+..+... .++.|+++|+||+|+.+.+.+..+ ..+.++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5778999999999999877652 23455555443 247999999999999877666544 5666777777 89999
Q ss_pred eecCCCCChHHHHHHHHhh
Q 030856 151 TSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~ 169 (170)
|||++|.|++++|++|.+.
T Consensus 184 ~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHH
Confidence 9999999999999999865
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=191.34 Aligned_cols=156 Identities=21% Similarity=0.329 Sum_probs=117.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|.+|+|||||++++.+..+... .++.+..+.. +.. ..+.+.+|||||++.+..++..++..+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~--~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE--EEE--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE--Eec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999998876433 3555444332 223 3468999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++.+..|+..+.... .+++|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 9999999999999988877765543 36899999999999876433 22222221 2235689999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|++|.+.
T Consensus 316 el~~~l~~~ 324 (329)
T 3o47_A 316 EGLDWLSNQ 324 (329)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.97 E-value=7e-31 Score=174.45 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=111.1
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhhh
Q 030856 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR 72 (170)
Q Consensus 3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~ 72 (170)
..+....++|+++|++|+|||||++++.+..+...+.++.+.+........++ .+.+||||| .+.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence 34456789999999999999999999998875444444444333333333333 589999999 77788
Q ss_pred hhhhhhhcCC---cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--HHHHH-HHHhcCC
Q 030856 73 SLIPSYIRDS---SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGEA-KSRELNV 146 (170)
Q Consensus 73 ~~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~--~~~~~-~~~~~~~ 146 (170)
.....++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+...+++.. +++++ ++...++
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 8888888777 9999999999876665532 1222222 4789999999999976555432 23333 3334567
Q ss_pred eEEEeecCCCCChHHHHHHHHhh
Q 030856 147 MFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 147 ~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+++++||++|.|+++++++|.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHH
T ss_pred ceEEEEccCCCCHHHHHHHHHHH
Confidence 99999999999999999999875
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=7.9e-31 Score=196.35 Aligned_cols=157 Identities=22% Similarity=0.353 Sum_probs=125.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+.++|+++|.+|+|||||++++.++.+. .+.+|.+..... +.. ..+.+.+|||||++.+...+..++.++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--EES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE--EEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999998854 345666544433 223 3468999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~ 160 (170)
+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.. ..++..... ...++++++|||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999999888765433 689999999999986533 223322222 1234579999999999999
Q ss_pred HHHHHHHhhC
Q 030856 161 GCSPTIRRLI 170 (170)
Q Consensus 161 ~~~~~l~~~i 170 (170)
++|++|.+.+
T Consensus 473 ~l~~~l~~~~ 482 (497)
T 3lvq_E 473 EGLTWLTSNY 482 (497)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 109
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.97 E-value=2.3e-31 Score=187.04 Aligned_cols=153 Identities=17% Similarity=0.172 Sum_probs=119.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC---CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh---hhhhhhcCCcE
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV 84 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 84 (170)
||+++|..|+|||||++++.++..+. .+.+|.+.++.. ++ ..+++++|||+|+++|+. ....|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988765433 245677666543 22 347899999999999974 46889999999
Q ss_pred EEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-------cccCHHHHHHHHHh----cCCeEEEe
Q 030856 85 AVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSRE----LNVMFIET 151 (170)
Q Consensus 85 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 151 (170)
+|+|||++++ +.++.+..|+..+... .+++|+++++||+|+..+ |++..++++++++. ++++|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 3333344444444443 468999999999999764 45777788888886 68899999
Q ss_pred ecCCCCChHHHHHHHHhhC
Q 030856 152 SAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 152 S~~~~~~v~~~~~~l~~~i 170 (170)
||++ .++.+.|..+++.+
T Consensus 155 SAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTS
T ss_pred ccCC-CcHHHHHHHHHHHH
Confidence 9998 59999999998754
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=2.1e-30 Score=169.72 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=116.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 85 (170)
..+.++|+++|++|+|||||++++.+..+...+.++.+.+.....+..++. .+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 356799999999999999999999998887666666665665566666664 578999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-------cC--CeEEEeecCCC
Q 030856 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LN--VMFIETSAKAG 156 (170)
Q Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~S~~~~ 156 (170)
++|||++++...+.. ..+......+.|+++|+||+|+... ..++....... .+ ++++++||++|
T Consensus 83 i~v~d~~~~~~~~~~----~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV----EAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTCCCCHHHH----HHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECCCCCcHHHH----HHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 999999884222111 1122222357899999999998653 22333322222 22 58999999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
.|++++|++|.+.
T Consensus 156 ~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 156 EGLDHLLEMILLV 168 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=1.9e-30 Score=171.45 Aligned_cols=155 Identities=15% Similarity=0.206 Sum_probs=120.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh------hhhhhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYI 79 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~ 79 (170)
.++.++|+++|++|+|||||++++.+........++.+.+.....+..++ ..+.+|||||.+.+. .....++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 45789999999999999999999998765444455555555555555554 678999999988764 3455555
Q ss_pred c--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856 80 R--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 80 ~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (170)
. .+|++++++|.++ ++....|+..+.. .+.|+++|+||+|+...+.+. +..+.+++..+++++++||+++.
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 4 5999999999875 4555667666654 478999999999986554444 45677888889999999999999
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|++++|++|.+.
T Consensus 155 ~v~~l~~~i~~~ 166 (188)
T 2wjg_A 155 GIEELKKAISIA 166 (188)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.97 E-value=2.3e-30 Score=169.04 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=114.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh--------hhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 78 (170)
+..+|+++|++|+|||||++++.+.... ....++.+.++....+..++. .+.+|||||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987542 222344444555566666663 4789999997643211 1235
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
+.++|++++|||++++.+++ ...|+..+......++|+++|+||+|+.+... .++...+++++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999988766 45677777766556799999999999854211 12333567999999999999
Q ss_pred hHHHHHHHHhhC
Q 030856 159 IKGCSPTIRRLI 170 (170)
Q Consensus 159 v~~~~~~l~~~i 170 (170)
++++|++|.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.97 E-value=1.1e-30 Score=196.94 Aligned_cols=161 Identities=20% Similarity=0.345 Sum_probs=124.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEE------E--EeCCeEEEEEEEecCChhhhhhhhh
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT------M--YLEDRTVRLQLWDTAGQERFRSLIP 76 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~~ 76 (170)
...+.+||+++|.+|+|||||++++.+..+...+.++.+.++.... + ..++....+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4567899999999999999999999999887777788776665442 1 1123457899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (170)
.++.++|++|+|||+++. +.+..|+..+.... ++.|+++|+||+|+...+.+..++.+.++...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999998764 56677888887765 47999999999999888888889999999999999999999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
.|+++++++|.+.
T Consensus 193 ~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 193 DGVESIAKSLKSA 205 (535)
T ss_dssp --CTTHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999864
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.97 E-value=7.4e-30 Score=164.52 Aligned_cols=150 Identities=18% Similarity=0.164 Sum_probs=107.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-------hhhhhhhhhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD 81 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 81 (170)
.||+++|++|+|||||++++.+.... ....+..+.+........++. .+.+||+||... +......++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987653 233344444555555555553 689999999876 34556677899
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 030856 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 160 (170)
+|++++|+|.+++.+.. ..++..+... .+.|+++|+||+|+.+.+ +++++++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 99999999999753322 2233333222 368999999999986542 3334455 5677 89999999999999
Q ss_pred HHHHHHHhhC
Q 030856 161 GCSPTIRRLI 170 (170)
Q Consensus 161 ~~~~~l~~~i 170 (170)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998865
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.97 E-value=4.6e-30 Score=169.71 Aligned_cols=151 Identities=23% Similarity=0.300 Sum_probs=114.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC-----------hhhhhhhhhhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY 78 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 78 (170)
++|+++|++|+|||||++++.+..+...+.++.+....... .. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--cC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998877666665543333222 22 689999999 67777777778
Q ss_pred hcC-CcEEEEEEeCCChhhHHhH-HHHHHH--------H-HHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe
Q 030856 79 IRD-SSVAVVVYDVASRQSFLNT-SKWIDE--------V-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (170)
Q Consensus 79 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~-~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
+.+ +++++++|++.+..+++.+ ..|... + ......+.|+++|+||+|+...+ .+..+.+++..+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 7766667776666777766 455432 2 22223579999999999987654 56778888888874
Q ss_pred -------EEEeecCCCCChHHHHHHHHhh
Q 030856 148 -------FIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 148 -------~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+++|||++|.|++++|++|.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEV 181 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence 7999999999999999999875
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.96 E-value=5.8e-29 Score=175.84 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=125.1
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh----------
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------- 72 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------- 72 (170)
+++.+.-.|+++|.+|+|||||+|++++.... .+..+..+.+........+ ...++.+|||||.....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 45667789999999999999999999998765 2333333333333333333 13678999999985433
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEE
Q 030856 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIE 150 (170)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 150 (170)
.....++..+|++++|+|++++.+.+....|+..+.. .+.|+++|+||+|+...+....+....+....+ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 5667778899999999999998888887777777665 368999999999987455555677778888875 69999
Q ss_pred eecCCCCChHHHHHHHHhhC
Q 030856 151 TSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~i 170 (170)
+||++|.|+++++++|.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHS
T ss_pred EeCCCCCCHHHHHHHHHHhC
Confidence 99999999999999998753
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.96 E-value=1.4e-29 Score=174.93 Aligned_cols=154 Identities=17% Similarity=0.200 Sum_probs=117.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh------hhhhhh-
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI- 79 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~- 79 (170)
.+.++|+++|.+|+|||||+|++.+........+..+.+.....+...+ ..+.+|||||...+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999998766444445455454444444443 6899999999877654 224555
Q ss_pred -cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 80 -RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 80 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
..+|++++|+|+++.++.. .|...+.. .+.|+++|+||+|+...+.+. .+.+.+++.++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999876543 34444433 479999999999986555544 246778889999999999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
++++|++|.+.
T Consensus 154 i~el~~~i~~~ 164 (258)
T 3a1s_A 154 LEELKEKIVEY 164 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=8.6e-29 Score=164.17 Aligned_cols=158 Identities=19% Similarity=0.258 Sum_probs=113.2
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhh
Q 030856 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERF 71 (170)
Q Consensus 2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~ 71 (170)
...+....++|+++|++|+|||||++++.+.... ...++.+.+........+. .+.+||||| .+.+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence 3445567899999999999999999999988732 2233333222222222222 478999999 6677
Q ss_pred hhhhhhhhcCC---cEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--ccCHHHHHHHHHhc
Q 030856 72 RSLIPSYIRDS---SVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSREL 144 (170)
Q Consensus 72 ~~~~~~~~~~~---d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~~~~~~~~~~~~~ 144 (170)
......++..+ |++++|+|.+++.+. ..+..|+.. .+.|+++|+||+|+.... ....++++.++...
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 77777777766 999999998875332 233334332 268999999999986543 33345566666664
Q ss_pred C-CeEEEeecCCCCChHHHHHHHHhh
Q 030856 145 N-VMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 145 ~-~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+ ++++++||++|.|++++|++|.+.
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~ 191 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTL 191 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHH
Confidence 4 699999999999999999999875
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.96 E-value=8.3e-30 Score=175.74 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=116.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----------hhhhhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI 79 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 79 (170)
.+|+++|.+|+|||||+|++.+........++.+.+.....+..++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988655445566666666666666664 789999999876653 455566
Q ss_pred --cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856 80 --RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 80 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (170)
.++|++++|+|+++.++...+..++. ..+.|+++|+||+|+...+.... ....+++..+++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 89999999999998766555444322 23799999999999865443322 2455778889999999999999
Q ss_pred ChHHHHHHHHh
Q 030856 158 NIKGCSPTIRR 168 (170)
Q Consensus 158 ~v~~~~~~l~~ 168 (170)
|+++++++|.+
T Consensus 153 gi~el~~~i~~ 163 (256)
T 3iby_A 153 GIPALQQSLLH 163 (256)
T ss_dssp SHHHHHHHHHT
T ss_pred CHHHHHHHHHh
Confidence 99999999975
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.96 E-value=1.1e-29 Score=176.41 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=114.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh------hhhhhhhc-
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR- 80 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 80 (170)
..++|+++|++|+|||||+|++.+........+..+.+.. ...+.. ...+.+|||||...+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~--~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK--SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE--EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEE--EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3589999999999999999999987644333343333322 223344 5679999999988765 34556665
Q ss_pred -CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 81 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
.+|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+...+.+. .....+++..+++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999986554 344444443 479999999999986554444 4567788889999999999999999
Q ss_pred HHHHHHHHhh
Q 030856 160 KGCSPTIRRL 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|.+.
T Consensus 152 ~el~~~i~~~ 161 (272)
T 3b1v_A 152 DQVVKKAAHT 161 (272)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.96 E-value=1.1e-29 Score=176.86 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=116.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----------hhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPS 77 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~ 77 (170)
++++|+++|.+|+|||||+|++.+........++.+.+.....+...+ ..+.+|||||...+.. ....
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 579999999999999999999998875544455555566666665554 4678999999876652 2233
Q ss_pred hh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCC
Q 030856 78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 78 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 155 (170)
++ ..+|++++|+|+++.++...+..++... +.|+++|+||+|+.+.+... .....+++..+++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 33 6899999999999876655544443332 69999999999986544332 234667888899999999999
Q ss_pred CCChHHHHHHHHhh
Q 030856 156 GFNIKGCSPTIRRL 169 (170)
Q Consensus 156 ~~~v~~~~~~l~~~ 169 (170)
|.|+++++++|.+.
T Consensus 153 g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 153 GRGIEALKLAIDRY 166 (274)
T ss_dssp GHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999865
No 122
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=1.3e-29 Score=171.11 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=107.3
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC---CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhh
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 77 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 77 (170)
|......+.++|+++|++|+|||||++++.+..+.. .+.++.+.++ ....+.+||+||++.+...+..
T Consensus 4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~ 74 (218)
T 1nrj_B 4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD 74 (218)
T ss_dssp ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence 334445678999999999999999999999887643 2344443222 3457899999999999888888
Q ss_pred hhcC----CcEEEEEEeCC-ChhhHHhHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCCcccC------HHHHHHHHH
Q 030856 78 YIRD----SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSR 142 (170)
Q Consensus 78 ~~~~----~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~~~vvv~nK~D~~~~~~~~------~~~~~~~~~ 142 (170)
++.. +|++++|||++ +++++.....|+..+... ...+.|+++|+||+|+...+.+. .+++..++.
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 154 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE 154 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH
Confidence 8887 89999999999 888999998888887654 34689999999999998766544 455666666
Q ss_pred hcCCeEEEeecCCCCC
Q 030856 143 ELNVMFIETSAKAGFN 158 (170)
Q Consensus 143 ~~~~~~~~~S~~~~~~ 158 (170)
..+++++++|+++|.+
T Consensus 155 ~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 155 RRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHC--------
T ss_pred HHhccccccccccccc
Confidence 6666667777766653
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.96 E-value=1.1e-28 Score=167.17 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=108.2
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCCccceeeeeeeEEEEEeC-CeEEEEEEEecCC----------hhh
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAG----------QER 70 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g----------~~~ 70 (170)
.+....++|+++|.+|+|||||++++++... .....+..+.+.. ..... .....+.+||||| .+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 4456689999999999999999999998863 2222222222222 22222 3335789999999 344
Q ss_pred hhhhhhhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HHHHHHHHHh--
Q 030856 71 FRSLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE-- 143 (170)
Q Consensus 71 ~~~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~~~~~~~~~-- 143 (170)
+......++.. +|++++|+|.+++.+. ....++..+.. .+.|+++|+||+|+....... .+...+....
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 56666666665 7889999999875332 22334444433 468999999999987543321 1222222332
Q ss_pred -----cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 144 -----LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 144 -----~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+++++++||++|.|+++++++|.+.
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence 45699999999999999999999875
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.95 E-value=3.2e-28 Score=169.44 Aligned_cols=154 Identities=21% Similarity=0.225 Sum_probs=117.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh------hhhhhh--
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI-- 79 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 79 (170)
+.++|+++|++|+|||||++++.+........++.+.+.........+. .+.+|||||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999999988765455566666666666666553 589999999887655 455555
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (170)
.++|++++|+|+++.+. ...|...+... ...|+++|+||+|+.+.+....+ ...+++..+++++++||++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 68999999999987532 23333333332 23899999999998654443322 67788888999999999999999
Q ss_pred HHHHHHHHhh
Q 030856 160 KGCSPTIRRL 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++++++.+.
T Consensus 154 ~~l~~~i~~~ 163 (271)
T 3k53_A 154 EELKRMIALM 163 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.95 E-value=2e-27 Score=167.28 Aligned_cols=158 Identities=17% Similarity=0.146 Sum_probs=109.4
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--------h
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------F 71 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~ 71 (170)
|++. .+..+|+++|.+|+|||||+|++++.... .+..+..+.+........+ ..++.+|||||... +
T Consensus 1 m~~~--~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~ 76 (301)
T 1wf3_A 1 MAEK--TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFM 76 (301)
T ss_dssp --CC--CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHH
T ss_pred CCCC--ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHH
Confidence 4553 56678999999999999999999998764 2233333322222222222 36799999999765 4
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCCcc-cCHHHHHHHHHhcC-CeE
Q 030856 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQ-VSIEEGEAKSRELN-VMF 148 (170)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~vvv~nK~D~~~~~~-~~~~~~~~~~~~~~-~~~ 148 (170)
......++..+|++++|+|++++.+.. ..|+ ..+... .++.|+++|+||+|+...+. + .+.++.+ .+ .++
T Consensus 77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~---~~~~~~ 149 (301)
T 1wf3_A 77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEA-MKAYHEL---LPEAEP 149 (301)
T ss_dssp HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHH-HHHHHHT---STTSEE
T ss_pred HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHH-HHHHHHh---cCcCcE
Confidence 455667789999999999998764433 3443 344433 24799999999999865433 2 1222222 23 489
Q ss_pred EEeecCCCCChHHHHHHHHhh
Q 030856 149 IETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+++||++|.|+++++++|.+.
T Consensus 150 ~~iSA~~g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 150 RMLSALDERQVAELKADLLAL 170 (301)
T ss_dssp EECCTTCHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHHh
Confidence 999999999999999999865
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.95 E-value=4.9e-28 Score=176.70 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=115.1
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-------
Q 030856 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------- 74 (170)
Q Consensus 3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------- 74 (170)
..+....++|+++|..|+|||||++++.+.... ....+..+.+.........+.. ++.+|||||..++...
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~ 106 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEK 106 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHH
Confidence 344567899999999999999999999988763 3334444445555555555543 7899999998876544
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC
Q 030856 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154 (170)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 154 (170)
...++.++|++++|+|++..+ ....|+..+... +.|+++|+||+|+...+.. +..+.+++.++++++++||+
T Consensus 107 ~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred HHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence 455788999999999984332 335555555543 7999999999999776554 66777888889999999999
Q ss_pred CCCChHHHHHHHHhhC
Q 030856 155 AGFNIKGCSPTIRRLI 170 (170)
Q Consensus 155 ~~~~v~~~~~~l~~~i 170 (170)
+|.|++++|++|.+.+
T Consensus 179 tg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 179 QKKGFDDIGKTISEIL 194 (423)
T ss_dssp CTTSTTTHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999998764
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.95 E-value=3.8e-27 Score=174.51 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=98.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhh--------hhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 78 (170)
..++|+++|.+|+|||||+|+|.+... .....+..+.+.....+..++ ..+.+|||||..++...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 358899999999999999999998753 244455556666666666666 579999999987765443 336
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
+..+|++++|+|++++.+++.+..+...+.. . .+.|+++|+||+|+....... .+.+......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l-~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAA-H-PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-C-TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHh-c-CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCC
Confidence 7899999999999998877654333332222 2 279999999999997655432 2334444347899999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
+++++++|.+.
T Consensus 385 I~eL~~~i~~~ 395 (476)
T 3gee_A 385 IDTLKQHMGDL 395 (476)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.95 E-value=4.7e-27 Score=173.27 Aligned_cols=157 Identities=21% Similarity=0.201 Sum_probs=112.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----------hhhhhhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI 75 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 75 (170)
...++|+++|.+|+|||||+|++++.... ....+..+.+.....+..++. .+.+|||||. +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999987653 333455555655556666664 4899999997 4444443
Q ss_pred h-hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHH-----HHHhcCCeEE
Q 030856 76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFI 149 (170)
Q Consensus 76 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~ 149 (170)
. .++..+|++++|+|++++.+++.. .|+..+.. .+.|+++|+||+|+.+.+....++..+ +....+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 478899999999999998777765 45555543 479999999999998766544333322 2223467999
Q ss_pred EeecCCCCChHHHHHHHHhh
Q 030856 150 ETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~ 169 (170)
++||++|.|++++|+.+.+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHH
Confidence 99999999999999988753
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.94 E-value=3.6e-26 Score=164.67 Aligned_cols=158 Identities=19% Similarity=0.171 Sum_probs=117.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh---------hhhhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPS 77 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 77 (170)
...++|+++|.+|+|||||++++.+........+..+.+......... ...+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876432222222223333333333 3578999999975321 12223
Q ss_pred hhcCCcEEEEEEeCCChh--hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCC
Q 030856 78 YIRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 155 (170)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.....+ ++...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 455799999999998876 67778888888877653 7999999999998654432 456667777889999999999
Q ss_pred CCChHHHHHHHHhh
Q 030856 156 GFNIKGCSPTIRRL 169 (170)
Q Consensus 156 ~~~v~~~~~~l~~~ 169 (170)
|+|+++++++|.+.
T Consensus 320 g~gi~~l~~~i~~~ 333 (357)
T 2e87_A 320 GTGIDLVKEEIIKT 333 (357)
T ss_dssp TBTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999999864
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.94 E-value=1.5e-26 Score=171.36 Aligned_cols=157 Identities=22% Similarity=0.238 Sum_probs=115.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhhhhhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI 75 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 75 (170)
...++|+++|.+|+|||||++++.+... .....++.+.+.....+..++. .+.+||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4579999999999999999999997653 2333444555555555556654 789999999 56666654
Q ss_pred h-hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-----CCeEE
Q 030856 76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFI 149 (170)
Q Consensus 76 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 149 (170)
. .++..+|++++|+|++++.+- ....|+..+.. .+.|+++|+||+|+.+.+....++..+.++.. +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 378899999999999875332 22334444433 47999999999999877777777777776655 57999
Q ss_pred EeecCCCCChHHHHHHHHhh
Q 030856 150 ETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~ 169 (170)
++||++|.|++++|+++.+.
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKA 366 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHH
Confidence 99999999999999998764
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.93 E-value=6.1e-26 Score=168.23 Aligned_cols=150 Identities=21% Similarity=0.290 Sum_probs=113.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh-hhhh--------hhhhh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRS--------LIPSY 78 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~ 78 (170)
.++|+++|.+|+|||||+|++.+... .....+..+.+.....+.+++ ..+.+|||||.. ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 38999999999999999999998753 234455556666666666665 468999999987 5432 23467
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
+..+|++|+|+|++++.+++... ++..+ .+.|+++|+||+|+... ...++...++. .+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 88999999999999887766533 22222 37899999999998653 34455554432 457899999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
+++++++|.+.
T Consensus 392 i~eL~~~l~~~ 402 (482)
T 1xzp_A 392 LEKLEESIYRE 402 (482)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.93 E-value=1.9e-26 Score=164.49 Aligned_cols=154 Identities=18% Similarity=0.122 Sum_probs=113.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhhhhhhhc---CCc
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSYIR---DSS 83 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~d 83 (170)
+|+++|.+|+|||||++++..........+..+.......+..++ ...+.+||+||..+ +..+...+++ .+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 689999999999999999998654211122122222222333433 14689999999643 3334455544 599
Q ss_pred EEEEEEeCCC---hhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeecCCC
Q 030856 84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG 156 (170)
Q Consensus 84 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~ 156 (170)
++|+|+|+++ +++++.+..|+..+..+.. .+.|+++|+||+|+...+ +..+++++..+ ++++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 7889999999888887642 479999999999986432 34566666666 68999999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
.|+++++++|.+.
T Consensus 315 ~gi~eL~~~l~~~ 327 (342)
T 1lnz_A 315 EGLRELLFEVANQ 327 (342)
T ss_dssp STTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999875
No 133
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=1.3e-24 Score=158.73 Aligned_cols=163 Identities=16% Similarity=0.091 Sum_probs=115.9
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEE-------EE---------Ee---CCeEEEEEEEe
Q 030856 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK-------TM---------YL---EDRTVRLQLWD 64 (170)
Q Consensus 4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D 64 (170)
....+.++|+++|.+++|||||+++|.+.......... ....... .. .. ......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 34567899999999999999999999985443211000 0000000 00 00 11236899999
Q ss_pred cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHH
Q 030856 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR 142 (170)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~ 142 (170)
|||++.+......++..+|++++|+|++++.++.....++..+.... ..|+++|+||+|+.+..+. ..++..++..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998766677777776655442 3589999999998754322 1223333333
Q ss_pred hc---CCeEEEeecCCCCChHHHHHHHHhh
Q 030856 143 EL---NVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 143 ~~---~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.. +++++++||++|.|+++++++|.+.
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 32 5689999999999999999999874
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.93 E-value=1e-24 Score=159.64 Aligned_cols=161 Identities=20% Similarity=0.174 Sum_probs=105.2
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCCccc--eeeeeeeEEEEEe-------------C--C----eEE
Q 030856 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQA--TIGIDFLSKTMYL-------------E--D----RTV 58 (170)
Q Consensus 3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~ 58 (170)
|......++|+++|..++|||||+++|.+... ..+..+ |....+....... + + ...
T Consensus 2 p~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 81 (408)
T 1s0u_A 2 PLGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR 81 (408)
T ss_dssp ---CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCccccccc
Confidence 44556789999999999999999999986432 233333 3332333222211 1 1 136
Q ss_pred EEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--c
Q 030856 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--V 132 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~ 132 (170)
.+.+|||||++.+.......+..+|++|+|+|++++ ++.+.+. .+.. . ...|+++++||+|+.+... .
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~-l-~~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEI-L-GIDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHH-T-TCCCEEEEEECTTSSCTTTTTT
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHH-c-CCCeEEEEEEccCCCCHHHHHH
Confidence 899999999999988888788889999999999853 3444333 2222 1 2347999999999976543 2
Q ss_pred CHHHHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 133 SIEEGEAKSRE---LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 133 ~~~~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
..+++++++.. .+++++++||++|.|+++++++|.+.
T Consensus 156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 34666677665 36799999999999999999999864
No 135
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.93 E-value=4.6e-25 Score=164.11 Aligned_cols=156 Identities=20% Similarity=0.186 Sum_probs=110.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhh
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 77 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 77 (170)
..++.++|+++|..++|||||+++|.+.. ...+..+..+.+.....+..++ ..+.+|||||++++......
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 34568999999999999999999999876 2223333344343333444444 67999999999999998999
Q ss_pred hhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHHHHHHHHHhc----CCeE
Q 030856 78 YIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSREL----NVMF 148 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~ 148 (170)
.+..+|++++|+|+++ +++.+.+. .+.. .++|.++|+||+|+.++.. ...++.++++... ++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 9999999999999987 33433332 2222 3688899999999875322 1234455555555 5799
Q ss_pred EEeecCCCCChHHHHHHHHhh
Q 030856 149 IETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+++||++|+|+++++++|.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHh
Confidence 999999999999999999864
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.93 E-value=4.2e-25 Score=162.98 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=101.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh---------hhhhhhhhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI 79 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 79 (170)
.+|+++|.+|||||||+|++++.... ....+..+.+.......+.+. .+.+|||||.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 344555666666666666664 578999999653 344567789
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH-HHHHHhcCC-eEEEeecCCCC
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKSRELNV-MFIETSAKAGF 157 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~S~~~~~ 157 (170)
+++|++++|+|.+++.+... .++..+.+. .+.|+++|+||+|+... . ..+. .++. ..++ .++++||++|.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence 99999999999987544322 222222222 26899999999997432 1 1222 3443 4566 78999999999
Q ss_pred ChHHHHHHHHhh
Q 030856 158 NIKGCSPTIRRL 169 (170)
Q Consensus 158 ~v~~~~~~l~~~ 169 (170)
|++++++++.+.
T Consensus 152 gv~~L~~~i~~~ 163 (439)
T 1mky_A 152 NLDTMLETIIKK 163 (439)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 999999999764
No 137
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.93 E-value=2e-24 Score=163.35 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=113.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC--CCCC-----c------cceeeeee--eEEEEEe---CCeEEEEEEEecCCh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNT-----Y------QATIGIDF--LSKTMYL---EDRTVRLQLWDTAGQ 68 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~--~~~~-----~------~~~~~~~~--~~~~~~~---~~~~~~~~i~D~~g~ 68 (170)
.+..+|+++|+.++|||||+++|+... .... . ....+.+. ......+ ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456899999999999999999998631 1100 0 00111111 1112212 455689999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC--
Q 030856 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-- 146 (170)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 146 (170)
.++......++..+|++|+|+|+++..+.+....|..... .++|+++|+||+|+...+ ..+...++....++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999877777777755442 479999999999986543 12334556666676
Q ss_pred -eEEEeecCCCCChHHHHHHHHhhC
Q 030856 147 -MFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 147 -~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
.++++||++|.|+++++++|.+.+
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred ccEEEEEeecCCCchHHHHHHHHhc
Confidence 489999999999999999998754
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.93 E-value=1.2e-24 Score=164.69 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=110.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC--CCC-----C------ccceeeeeeeE--EEEEe---CCeEEEEEEEecCChh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----T------YQATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~--~~~-----~------~~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~~ 69 (170)
+-.||+++|+.++|||||+++|+... ... . ..+..+.+... ..+.+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998632 110 0 01112222222 22222 4557899999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC---
Q 030856 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--- 146 (170)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 146 (170)
++...+..++..+|++|+|+|+++..+.+....|..... .++|+++|+||+|+...+ ..+..+++....++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999998777777777655442 478999999999997643 22334556666676
Q ss_pred eEEEeecCCCCChHHHHHHHHhhC
Q 030856 147 MFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 147 ~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
.++++||++|.|+++++++|.+.+
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHS
T ss_pred eEEEeecccCCCchhHHHHHhhcC
Confidence 499999999999999999998754
No 139
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=152.01 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=105.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc--eeeeeeeEEEEEeCCeEEEEEEEecCCh-----------hhh
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERF 71 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~ 71 (170)
+....++|+++|.+|+|||||+|++++........+ +.+.+........++ ..+.+|||||. ..+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345679999999999999999999999877655444 344444444455555 46899999993 344
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccC------HHHHHHHHHh
Q 030856 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVS------IEEGEAKSRE 143 (170)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~------~~~~~~~~~~ 143 (170)
......+++++|++|+|+|+++... ....|+..+....+ ...|+++|+||+|+...+.+. .+.++.++..
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 4555556678899999999875433 11233333322211 246899999999987654433 2467888888
Q ss_pred cCCeEEEeecCCC-----CChHHHHHHHHhh
Q 030856 144 LNVMFIETSAKAG-----FNIKGCSPTIRRL 169 (170)
Q Consensus 144 ~~~~~~~~S~~~~-----~~v~~~~~~l~~~ 169 (170)
.+..++.++...+ .++.++++.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~ 211 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRV 211 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHH
Confidence 8888888877644 6888988887653
No 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.93 E-value=2e-25 Score=155.57 Aligned_cols=164 Identities=13% Similarity=0.213 Sum_probs=95.1
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCc-------cceeeeeeeEEEEEeCCeEEEEEEEecCChhh----
Q 030856 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---- 70 (170)
Q Consensus 3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---- 70 (170)
|+.....++|+++|.+|+|||||+|+|++.... ..+ .++.+.+........++..+++.+|||||...
T Consensus 2 p~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~ 81 (274)
T 3t5d_A 2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 81 (274)
T ss_dssp -----CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC
T ss_pred CCcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc
Confidence 344556799999999999999999998876554 333 45555555555555556667999999999632
Q ss_pred ---hhhhh-------hhhhc-------------CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 71 ---FRSLI-------PSYIR-------------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 71 ---~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
+.... ..++. ++|+++++++.++.........++..+.. ++|+++|+||+|+.
T Consensus 82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTL 157 (274)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGS
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCC
Confidence 22222 33333 37899999987652211222333333332 79999999999986
Q ss_pred CCcccC--HHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 128 EKRQVS--IEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
...+.. .+...+.....+++++++|+.+++|+++++++|.+.+
T Consensus 158 ~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 533322 2345555667889999999999999999999998753
No 141
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.92 E-value=4.4e-25 Score=157.97 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=96.9
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D 125 (170)
.+.+.+||++|++.++..|..++++++++|||||+++ ..++.....|+..+.... ..+.|++||+||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4789999999999999999999999999999999998 567888888888887643 26799999999999
Q ss_pred CCCCc---------------ccCHHHHHHHHH-----------hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 126 LVEKR---------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 126 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+..++ .++.+++..++. ..++.+++|||+++.|++++|+++.+.
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 85332 356788888886 356799999999999999999999864
No 142
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.92 E-value=1.6e-24 Score=152.65 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=107.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh-h--------hhhhhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-R--------FRSLIP 76 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~ 76 (170)
.+..+|+++|++|+|||||+|++.+.... .+..+..+.+........+ ..++.+|||||.. . +.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45678999999999999999999987653 1222222222222222222 3578999999986 2 233345
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 155 (170)
.++..+|++++|+|.++ +.....|+..... ..+.|+++++||+|+...+....+....+...+++ .++++||++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 66788999999999876 3333334333222 24789999999999865333333555666666776 799999999
Q ss_pred CCChHHHHHHHHhh
Q 030856 156 GFNIKGCSPTIRRL 169 (170)
Q Consensus 156 ~~~v~~~~~~l~~~ 169 (170)
+.|++++++.+.+.
T Consensus 159 g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 159 GLNVDTIAAIVRKH 172 (301)
T ss_dssp TTTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999864
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.92 E-value=1.1e-25 Score=166.23 Aligned_cols=150 Identities=20% Similarity=0.250 Sum_probs=101.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhh--------hh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP--------SY 78 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~ 78 (170)
..++|+++|++|+|||||+|+|.+.... ....++.+.+.....+..++ ..+.+|||||..++..... .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3578999999999999999999986432 33345555566555666666 4689999999766544333 35
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (170)
+..+|++++|+|.+++.+... ..|+..+ .+.|+++|+||+|+....... ..+.+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998755544 3444443 237999999999997655443 111111 356899999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
+++++++|.+.
T Consensus 371 i~eL~~~i~~~ 381 (462)
T 3geh_A 371 IDSLETAILEI 381 (462)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.92 E-value=5.7e-24 Score=153.05 Aligned_cols=158 Identities=19% Similarity=0.110 Sum_probs=106.3
Q ss_pred cee-EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh---------hhhhhhhhh
Q 030856 9 KYK-LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSY 78 (170)
Q Consensus 9 ~~~-i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 78 (170)
.++ |+++|++|+|||||+|++.+........+..+.+.....+.+++ ..+.+|||+|.. .+... ...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHH
Confidence 355 99999999999999999998876433344444455556666666 468999999962 22222 234
Q ss_pred hcCCcEEEEEEeCCChh--hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHHhc---CCeEEEee
Q 030856 79 IRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSREL---NVMFIETS 152 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~S 152 (170)
+..+|++++|+|++++. ..+....|...+......+.|+++|+||+|+...... ..+.+..+++.. +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 78899999999999876 5555555555555443467899999999998653311 012233344444 34789999
Q ss_pred cCCCCChHHHHHHHHhh
Q 030856 153 AKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 153 ~~~~~~v~~~~~~l~~~ 169 (170)
|+++.|+++++++|.+.
T Consensus 335 A~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQL 351 (364)
T ss_dssp TTTTBSHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHH
Confidence 99999999999999764
No 145
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.92 E-value=3.9e-24 Score=156.62 Aligned_cols=158 Identities=19% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCCccc--eeeeeeeEEEEEe-------------C--C----eEEEEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQA--TIGIDFLSKTMYL-------------E--D----RTVRLQ 61 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 61 (170)
....++|+++|+.++|||||+++|.+... ..+..+ |....+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 35569999999999999999999996432 233334 3322332222211 1 1 136899
Q ss_pred EEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHH
Q 030856 62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIE 135 (170)
Q Consensus 62 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~ 135 (170)
+|||||++.|.......+..+|++|+|+|+++. ++.+.+. .+... ...|+++++||+|+.+... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII--GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999988888888899999999999853 3333333 22222 1357999999999875432 2234
Q ss_pred HHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 136 EGEAKSRE---LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 136 ~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+.++++.. .+++++++||++|.|+++++++|.+.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 45555554 36799999999999999999999864
No 146
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.92 E-value=1.1e-24 Score=154.00 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=95.4
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D 125 (170)
.+++++||++|++.++..|..|+++++++|+|||++ +.+++.....|+..+..... .+.|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 378999999999999999999999999999999655 66778888888888765433 6899999999999
Q ss_pred CCCCc----------------ccCHHHHHHHH----------HhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 126 LVEKR----------------QVSIEEGEAKS----------RELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 126 ~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+.+++ ..+.+++.+++ ...++.++++||+++.||+++|+.+.+.
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 86543 46778888884 3566788999999999999999998864
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.92 E-value=1.1e-24 Score=150.72 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccce-eeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----------
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------- 73 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------- 73 (170)
..+.++|+++|.+|+|||||++++++... .....++ .+.+.........+ ..+.+|||||...+..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 44679999999999999999999998763 3333333 33344444444444 4689999999765432
Q ss_pred -hhhhhhcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEe-CCCCCCCcccCH-------HHHHHHHHh
Q 030856 74 -LIPSYIRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGN-KTDLVEKRQVSI-------EEGEAKSRE 143 (170)
Q Consensus 74 -~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~n-K~D~~~~~~~~~-------~~~~~~~~~ 143 (170)
....+++.+|++++|+|+++... ...+..++..+.... ...|+++++| |+|+... .... .+++.++..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 22236788999999999986222 122223333322111 1345555556 9998743 2211 234445555
Q ss_pred cCCe---E--EEeecCCCCChHHHHHHHHhh
Q 030856 144 LNVM---F--IETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 144 ~~~~---~--~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+.. + +++||+++.|++++|++|.+.
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~ 205 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDL 205 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHH
Confidence 5432 2 789999999999999999864
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.92 E-value=4.3e-24 Score=157.34 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=104.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccceeeeeeeEEEEEeC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (170)
....++|+++|.+++|||||+++|++... ..+..+..+.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35679999999999999999999965321 11112334444444444443
Q ss_pred CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhh---HH---hHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030856 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~ 127 (170)
...+.||||||+++|......++..+|++|+|+|+++... |+ .....+..+. ..++| +++++||+|+.
T Consensus 94 --~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~---~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 94 --KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMDDP 168 (439)
T ss_pred --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH---HcCCCeEEEEeecCCCc
Confidence 3589999999999999999999999999999999987532 22 1222222222 23566 89999999985
Q ss_pred CCc------ccCHHHHHHHHHhcC------CeEEEeecCCCCChHHHHH
Q 030856 128 EKR------QVSIEEGEAKSRELN------VMFIETSAKAGFNIKGCSP 164 (170)
Q Consensus 128 ~~~------~~~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~~ 164 (170)
... ....++...+++..+ ++++++||++|.|++++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 321 111234444555444 4799999999999998543
No 149
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.92 E-value=1.5e-24 Score=148.87 Aligned_cols=161 Identities=10% Similarity=0.066 Sum_probs=102.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccce--eeeeeeEEEEEeCCeEEEEEEEecCCh--------hhhhhh
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSL 74 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~ 74 (170)
...+.++|+++|.+|+|||||+|++++........+. .+..........++ ..+.+|||||. +.+...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 3457899999999999999999999988765433222 22223333334444 56899999995 333333
Q ss_pred hhhhh----cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCccc------CHHHHHHHH
Q 030856 75 IPSYI----RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQV------SIEEGEAKS 141 (170)
Q Consensus 75 ~~~~~----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~~~~~------~~~~~~~~~ 141 (170)
...++ .++|++|+|+|+++... ....++..+....+ .+.|+++++||.|+...... ..+..+.+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 33333 89999999999985321 11222333333322 36899999999998653211 114467778
Q ss_pred HhcCCeEEEeecCC-----CCChHHHHHHHHhh
Q 030856 142 RELNVMFIETSAKA-----GFNIKGCSPTIRRL 169 (170)
Q Consensus 142 ~~~~~~~~~~S~~~-----~~~v~~~~~~l~~~ 169 (170)
...+..++.++... +.+++++++.|.+.
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~ 205 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGL 205 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHH
Confidence 88888777776654 57899999988764
No 150
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=3e-25 Score=163.65 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=97.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh--------hhhhhhhhhh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI 79 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~ 79 (170)
..+|+++|.+|||||||+|+|.+.... ....+..+.+...... ......+.+|||||.+ .+......++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~--~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEEC--TTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEE--EECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 468999999999999999999987653 2222333333333333 3333578999999975 5666778889
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCC
Q 030856 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (170)
Q Consensus 80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 158 (170)
.++|++++|+|+.++.+... .++..+.. ..+.|+++|+||+|+...+.. ..++. ..++ .++++||++|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCC
Confidence 99999999999987655443 33333322 257899999999998643211 11222 3455 789999999999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
++++++++.+.
T Consensus 152 v~~L~~~i~~~ 162 (436)
T 2hjg_A 152 LGDLLDAVAEH 162 (436)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHHHh
Confidence 99999999864
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=9.5e-24 Score=155.79 Aligned_cols=157 Identities=21% Similarity=0.225 Sum_probs=105.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-----------
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------- 74 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 74 (170)
...++|+++|++|+|||||+|++.+.... ....+..+.+.....+..++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35689999999999999999999987542 233344444555555666664 5789999997433221
Q ss_pred -hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH-----HHHHhcCCeE
Q 030856 75 -IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMF 148 (170)
Q Consensus 75 -~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~ 148 (170)
...++..+|++++++|++++.+.+.. .+...+. . .+.|+++|+||+|+.+.+....++.. .+....++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-R--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-H--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 13457789999999999876554432 2222222 2 47999999999998765554443332 2233345799
Q ss_pred EEeecCCCCChHHHHHHHHhh
Q 030856 149 IETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+++||++|.|++++|+.+.+.
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998763
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.91 E-value=2.3e-24 Score=160.65 Aligned_cols=152 Identities=17% Similarity=0.237 Sum_probs=99.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCccceeeeeeeEEEEEeCC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLED 55 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 55 (170)
...+||+++|.+++|||||+++|++... . .+..+..+.+..... +..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH--FST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE--EEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE--Eec
Confidence 3569999999999999999999976511 0 011112222222222 333
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHh-----HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-----TSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
....+.||||||++++......++..+|++|+|+|++++++... ...+...+.... ...|+++|+||+|+.+.+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence 44679999999999999999999999999999999998644322 122222222222 234699999999997644
Q ss_pred ccCHHHHH----HHHHhc-----CCeEEEeecCCCCChHH
Q 030856 131 QVSIEEGE----AKSREL-----NVMFIETSAKAGFNIKG 161 (170)
Q Consensus 131 ~~~~~~~~----~~~~~~-----~~~~~~~S~~~~~~v~~ 161 (170)
+...++.. .+.... +++++++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 43333333 333333 46899999999999985
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.91 E-value=3.7e-25 Score=159.30 Aligned_cols=155 Identities=16% Similarity=0.245 Sum_probs=87.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCc--------cceeeeeeeEEEEEeCCeEEEEEEEecCCh-------hhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 71 (170)
..++|+++|++|+|||||+++|++.... ..+ .++.+.+.........+....+.+|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999998765432 222 134444443333444566678999999998 555
Q ss_pred hhhhh-------hhhcCC-------------cEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 72 RSLIP-------SYIRDS-------------SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 72 ~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
..+.. .++..+ |+++|+++.+ ..++..+. .++..+ ..++|+++|+||+|+...+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 55554 555443 3455555432 34454443 333332 3679999999999997766
Q ss_pred ccCH--HHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856 131 QVSI--EEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
++.. +++..++..++++++++||+++.+ ++.|.++.+
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence 5544 577788888899999999999988 666665554
No 154
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-24 Score=142.88 Aligned_cols=118 Identities=18% Similarity=0.309 Sum_probs=90.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCC---CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcC-
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD- 81 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 81 (170)
..+.++|+++|++|+|||||++++.+..+.. ...++.+.++ ....+.+|||||...+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3567899999999999999999999887543 2222222111 34578999999999888877777766
Q ss_pred ---CcEEEEEEeCC-ChhhHHhHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCCccc
Q 030856 82 ---SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 82 ---~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~~~vvv~nK~D~~~~~~~ 132 (170)
+|++++|||++ +++++..+..|+..+... ...+.|+++|+||+|+...+.+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 89999999999 899999998888877654 2358999999999999765544
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.91 E-value=3.5e-26 Score=170.88 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=112.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 87 (170)
++++|+++|++++|||||+++|.+..+.....++.+.+.....+..++ ..++.||||||++.+..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 568899999999999999999997665444445555444444433322 2368999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC-HHHHHHH---HHhc--CCeEEEeecCCCCChHH
Q 030856 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAK---SREL--NVMFIETSAKAGFNIKG 161 (170)
Q Consensus 88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~S~~~~~~v~~ 161 (170)
|+|+++....+....| ......++|+++++||+|+.+..... ..+.... +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~l----~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVESI----QHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHHH----HHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHHH----HHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999986544433322 22223578999999999986532211 1112111 1222 34899999999999999
Q ss_pred HHHHHHhh
Q 030856 162 CSPTIRRL 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
++++|...
T Consensus 158 Lle~I~~l 165 (537)
T 3izy_P 158 LAEATIAL 165 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998753
No 156
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.91 E-value=1.1e-23 Score=150.72 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=91.8
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCC
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKT 124 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~ 124 (170)
..+.+.+|||+|++.++.++..++++++++|+|||++ +.++++....|+..+.... .++.|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7889999999998887643 3689999999999
Q ss_pred CCCCCcc--c-------------------CHHHHHHHHHh----------------cCCeEEEeecCCCCChHHHHHHHH
Q 030856 125 DLVEKRQ--V-------------------SIEEGEAKSRE----------------LNVMFIETSAKAGFNIKGCSPTIR 167 (170)
Q Consensus 125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~S~~~~~~v~~~~~~l~ 167 (170)
|+.+++. + +.+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1 24666666442 234578999999999999999988
Q ss_pred hh
Q 030856 168 RL 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 341 ~~ 342 (354)
T 2xtz_A 341 ET 342 (354)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 157
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=1.4e-23 Score=150.63 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=88.5
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D 125 (170)
.+.+.+|||+|++.++..+..++.+++++|||||+++ ..++.....|+..+.... ..+.|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 3689999999999999999999999999999999998 778999999988887643 36899999999999
Q ss_pred CCCCc----------------ccCHHHHHHHHH-----------hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 126 LVEKR----------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 126 ~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+.+++ ..+.+++..++. ..++.+++|||+++.|++++|+++.+.
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 86422 256777777762 346789999999999999999998864
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.90 E-value=1.3e-23 Score=153.17 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=108.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC-------CCCC-------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDK-------FDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 73 (170)
+.++|+++|.+++|||||+++|.+.. +... .....+.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998731 1000 001112222222223333446789999999999988
Q ss_pred hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCcc---cCHHHHHHHHHhcC----
Q 030856 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN---- 145 (170)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 145 (170)
....++..+|++|+|+|+++....+.. .++..+.. .++| +++++||+|+..... ...++.+++++..+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888889999999999999985433332 23333332 3678 789999999864221 12245666777665
Q ss_pred -CeEEEeecCCCCC----------hHHHHHHHHhh
Q 030856 146 -VMFIETSAKAGFN----------IKGCSPTIRRL 169 (170)
Q Consensus 146 -~~~~~~S~~~~~~----------v~~~~~~l~~~ 169 (170)
++++++||++|.| +++++++|.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 5899999999764 88999998764
No 159
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=2.5e-24 Score=159.56 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=99.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC--------hhhhhhhhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIPS 77 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~ 77 (170)
.+...+|+++|.+|||||||+|+|.+..... ...+.+.+..............+.+||||| ++.+......
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 4567899999999999999999999876531 112222232233333444445799999999 7777888888
Q ss_pred hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCC
Q 030856 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAG 156 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 156 (170)
++.++|++|+|+|..++ +.....|+..+... .+.|+++|+||+|+..... ...++. ..++ .++++||++|
T Consensus 99 ~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHG 169 (456)
T ss_dssp HHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTC
T ss_pred hHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccc
Confidence 99999999999998753 23333444443332 5799999999999754221 111111 2333 5679999999
Q ss_pred CChHHHHHHHHhh
Q 030856 157 FNIKGCSPTIRRL 169 (170)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (170)
.|++++++++.+.
T Consensus 170 ~gv~~L~~~i~~~ 182 (456)
T 4dcu_A 170 LGLGDLLDAVAEH 182 (456)
T ss_dssp TTHHHHHHHHHTT
T ss_pred cchHHHHHHHHhh
Confidence 9999999998764
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=4.3e-23 Score=152.04 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=103.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCC----------ccce---------------------eeeeeeEEEEE
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNT----------YQAT---------------------IGIDFLSKTMY 52 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~--~~~----------~~~~---------------------~~~~~~~~~~~ 52 (170)
....++|+++|.+++|||||+++|++... ... ..++ .+.+.....
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~-- 98 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY-- 98 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE--
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE--
Confidence 34569999999999999999999986531 010 0011 111111111
Q ss_pred eCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856 53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 53 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~ 132 (170)
.......+.+|||||+++|......++..+|++|+|+|++++... ....++..+... ...|+++|+||+|+.+..+.
T Consensus 99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL--GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence 222345799999999999988888899999999999999875422 233444333322 12369999999998753211
Q ss_pred ----CHHHHHHHHHhcC-----CeEEEeecCCCCChHHH
Q 030856 133 ----SIEEGEAKSRELN-----VMFIETSAKAGFNIKGC 162 (170)
Q Consensus 133 ----~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 162 (170)
..++.+.+++..+ ++++++||++|.|++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 2345666777777 68999999999999873
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.90 E-value=4.1e-24 Score=156.31 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=111.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--------CCCCC-------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
....++|+++|.+++|||||+++|.+. .+... .....+.+.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999873 11100 001122222222233333446789999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhcC-
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN- 145 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~- 145 (170)
|......++..+|++|+|+|++++... ....++..+.. .++| +++++||+|+...... ..++.++++...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 998888899999999999999876433 33455544443 3678 8899999998642211 1234556666655
Q ss_pred ----CeEEEeecCCCCC------------------hHHHHHHHHhh
Q 030856 146 ----VMFIETSAKAGFN------------------IKGCSPTIRRL 169 (170)
Q Consensus 146 ----~~~~~~S~~~~~~------------------v~~~~~~l~~~ 169 (170)
++++++||++|.| +++++++|.+.
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 209 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY 209 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh
Confidence 6899999999987 78888888764
No 162
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.90 E-value=2.9e-23 Score=155.59 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=83.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-----------------CC-----ccceeeeeeeEEEEEeCCeEEEEEEEe
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-----------------NT-----YQATIGIDFLSKTMYLEDRTVRLQLWD 64 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D 64 (170)
.+..+|+|+|.+|+|||||+++|+..... .. ..+..+.......+... .+.+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEE
Confidence 35689999999999999999999621110 00 01112222222333333 46799999
Q ss_pred cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
|||+.++......++..+|++|+|+|++++.+.+....| ..+. ..++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999987666665544 2222 24789999999999864
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.90 E-value=8.4e-24 Score=155.82 Aligned_cols=153 Identities=18% Similarity=0.271 Sum_probs=102.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCCCc-----------------------------cceeeeeeeEEEEEeC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTY-----------------------------QATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 54 (170)
..+.++|+++|.+++|||||+++|++. .+.... .+..+.+.....+ .
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~ 80 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--E 80 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--E
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--e
Confidence 356799999999999999999999864 222110 1122222222222 2
Q ss_pred CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc----CCCC-eEEEEEeCCCCCCC
Q 030856 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER----GSDV-IIVLVGNKTDLVEK 129 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~-~~vvv~nK~D~~~~ 129 (170)
.....+.+|||||+++|......++..+|++|+|+|+++ .+|+....|..+...+. ..+. |+++++||+|+.+.
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 334679999999999999999999999999999999998 56665433222221111 1234 58899999998752
Q ss_pred c------ccCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856 130 R------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKG 161 (170)
Q Consensus 130 ~------~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 161 (170)
. ....++.+.++...+ ++++++||++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 1 122355666777665 6899999999999974
No 164
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.90 E-value=1.3e-23 Score=148.96 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=93.3
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~ 124 (170)
..+++++||++|++.++..|..|+++++++|||||++ +.+++.....|+..+..... .+.|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 3478999999999999999999999999999999998 67889998888888876543 689999999999
Q ss_pred CCCCCc---------------ccCHHHHHHHHHh---------------------------cCCeEEEeecCCCCChHHH
Q 030856 125 DLVEKR---------------QVSIEEGEAKSRE---------------------------LNVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 125 D~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~S~~~~~~v~~~ 162 (170)
|+..++ ..+.+++.+++.. .++.++++||+++.||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 985321 1245666555432 2368899999999999999
Q ss_pred HHHHHhh
Q 030856 163 SPTIRRL 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
|+.+.+.
T Consensus 319 F~~v~~~ 325 (340)
T 4fid_A 319 FMLAVDV 325 (340)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 165
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.90 E-value=2.2e-23 Score=150.38 Aligned_cols=143 Identities=10% Similarity=0.046 Sum_probs=104.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 90 (170)
+|+++|.+++|||||+++|. .+..+.+.....+.. ....+.+|||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~--~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDK--EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECS--SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEec--CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 222222222233333 33469999999999998888888899999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEe-CCCCCCCcccC--HHHHHHHHHhcC---CeEEE--eecCC---CCC
Q 030856 91 VASRQSFLNTSKWIDEVRTERGSDVII-VLVGN-KTDLVEKRQVS--IEEGEAKSRELN---VMFIE--TSAKA---GFN 158 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~S~~~---~~~ 158 (170)
++ ..+.....++..+.. .++|. ++++| |+|+ +..... .++.++++...+ +++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 334444555554443 25666 88889 9998 433222 245566665543 69999 99999 999
Q ss_pred hHHHHHHHHhh
Q 030856 159 IKGCSPTIRRL 169 (170)
Q Consensus 159 v~~~~~~l~~~ 169 (170)
++++++.|.+.
T Consensus 167 i~~L~~~l~~~ 177 (370)
T 2elf_A 167 VDELKARINEV 177 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.90 E-value=3.1e-23 Score=157.11 Aligned_cols=156 Identities=22% Similarity=0.226 Sum_probs=104.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCC----ccceeeeeeeEEEE------------EeCCeEEEEEEEecCChhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT----YQATIGIDFLSKTM------------YLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~ 70 (170)
.+.++|+++|++++|||||++++.+...... ..++.+..+..... ..+.....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4578999999999999999999987543221 11222222211100 0001112589999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC-------------H
Q 030856 71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-------------I 134 (170)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~-------------~ 134 (170)
|..++..++..+|++|+|+|+++ +++++.+.. +.. .++|+++++||+|+....... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999989999999999999998 555554432 222 478999999999986432110 0
Q ss_pred ---H-------HHHHHHHhc---------------CCeEEEeecCCCCChHHHHHHHHhh
Q 030856 135 ---E-------EGEAKSREL---------------NVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 135 ---~-------~~~~~~~~~---------------~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+ +........ .++++++||++|.|+++++++|...
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 0 111111111 2389999999999999999998753
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.8e-23 Score=158.16 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=101.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCc-------------------------------cceeeeeeeEEEEEeCC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------------------------------QATIGIDFLSKTMYLED 55 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 55 (170)
...++|+++|.+++|||||+++|++....-.. .+..+.+.....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 45799999999999999999999876321110 122233333333333
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---hHHhHHHHHHHHHHhcCCC-CeEEEEEeCCCCCCCcc
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~-~~~vvv~nK~D~~~~~~ 131 (170)
...++.||||||++.+......++..+|++|+|+|++++. ++.....+...+......+ .|+++|+||+|+.+.++
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 3357899999999999999999999999999999998642 1111111111111111223 45999999999876433
Q ss_pred cCH----HHHHHHHHhc-----CCeEEEeecCCCCChHHH
Q 030856 132 VSI----EEGEAKSREL-----NVMFIETSAKAGFNIKGC 162 (170)
Q Consensus 132 ~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~v~~~ 162 (170)
... ++...+.... +++++++||++|.|++++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 222 3333444443 358999999999999864
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.89 E-value=7.1e-25 Score=162.66 Aligned_cols=156 Identities=21% Similarity=0.194 Sum_probs=107.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 86 (170)
.+..+|+++|++++|||||++++.+........+..+.+.....+..++ ..+.+|||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999987554433333333333332333333 46899999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--ccCHH--HHHHHHHhcC--CeEEEeecCCCCChH
Q 030856 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIE--EGEAKSRELN--VMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~S~~~~~~v~ 160 (170)
+|+|+++....+... .+..+.. .++|+++++||+|+.... .+..+ +...++..++ ++++++||++|.|++
T Consensus 80 LVVda~~g~~~qT~e-~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 80 LVVAADDGVMPQTIE-AIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EEEETTTBSCTTTHH-HHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred EEeecccCccHHHHH-HHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999998742222222 2222222 478999999999986431 11100 0011122233 699999999999999
Q ss_pred HHHHHHHh
Q 030856 161 GCSPTIRR 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
+++++|..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99999864
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.89 E-value=4e-24 Score=158.63 Aligned_cols=155 Identities=17% Similarity=0.244 Sum_probs=91.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CccceeeeeeeEEEEEeCC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------------------------TYQATIGIDFLSKTMYLED 55 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 55 (170)
...++|+++|..++|||||+++|++. .+.. +..+..+.+.....+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 45689999999999999999999752 1110 001111222222223333
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCc-
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR- 130 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~- 130 (170)
...+.+|||||++.|.......+..+|++|+|+|+++. .+|+....+...+......++| +++++||+|+....
T Consensus 120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 35789999999999999888889999999999999975 2343222222222222224677 99999999985421
Q ss_pred -----ccCHHHHHHHHHhc-------CCeEEEeecCCCCChHHHH
Q 030856 131 -----QVSIEEGEAKSREL-------NVMFIETSAKAGFNIKGCS 163 (170)
Q Consensus 131 -----~~~~~~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~ 163 (170)
....++...+++.. +++++++||++|.|+++++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223456666655 4579999999999998754
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.88 E-value=5.1e-23 Score=144.98 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=101.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC------Ccccee----------------------eee-------------
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN------TYQATI----------------------GID------------- 45 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~------~~~~~~----------------------~~~------------- 45 (170)
...++|+++|.+|+|||||+|++++..+.+ ...|+. +.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999887631 111220 000
Q ss_pred --------eeEEEEEeC-CeEEEEEEEecCChh-------------hhhhhhhhhhcCCcEEE-EEEeCCChhhHHhHHH
Q 030856 46 --------FLSKTMYLE-DRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-VVYDVASRQSFLNTSK 102 (170)
Q Consensus 46 --------~~~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~ 102 (170)
.....+... .....+.+|||||.. .+..+...++..++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000000000 012578999999953 34566777888888766 7999987543333233
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh--cC-CeEEEeecCCCCChHHHHHHHHh
Q 030856 103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--LN-VMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 103 ~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
++..+. ..+.|+++|+||+|+.+......+..+..... .+ .+++++||++|.|+++++++|.+
T Consensus 184 ~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 433332 35789999999999976544322222211111 13 37889999999999999999864
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.88 E-value=1.7e-22 Score=160.17 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=109.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC-------C------C-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-------F------D-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~-------~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 71 (170)
....++|+++|++++|||||+++|.+.. + + ....++.+.+.......++.....+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567999999999999999999998631 0 0 011122222222222233344467999999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhcC--
Q 030856 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN-- 145 (170)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 145 (170)
......++..+|++|+|+|+++... .....++..+... ++| +++++||+|+.+..+. ..++.+.++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 9888889999999999999987533 2334444444432 577 7899999998753221 2245666676665
Q ss_pred ---CeEEEeecCCC--------CChHHHHHHHHhh
Q 030856 146 ---VMFIETSAKAG--------FNIKGCSPTIRRL 169 (170)
Q Consensus 146 ---~~~~~~S~~~~--------~~v~~~~~~l~~~ 169 (170)
++++++||++| .|+++++++|.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 68999999999 4689999998764
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.88 E-value=4.1e-23 Score=152.91 Aligned_cols=150 Identities=17% Similarity=0.213 Sum_probs=101.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------ccceeeeeeeEEEEEeCC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLED 55 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 55 (170)
...++|+++|.+++|||||+++|++. .+... ..+..+.+.....+. .
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~--~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE--C
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe--c
Confidence 45799999999999999999999864 11110 011122222222222 3
Q ss_pred eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---hHH---hHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 030856 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~ 128 (170)
....+.+|||||+++|......++..+|++|+|+|+++.. +|+ ....++..+.. .++| +++++||+|+.+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 3467999999999999999999999999999999998652 232 22222222222 3565 899999999873
Q ss_pred Ccc----cCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856 129 KRQ----VSIEEGEAKSRELN-----VMFIETSAKAGFNIKG 161 (170)
Q Consensus 129 ~~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 161 (170)
..+ ...++.+.+++..+ ++++++||++|.|+++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 211 12244556666655 6899999999999874
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-21 Score=131.47 Aligned_cols=155 Identities=16% Similarity=0.210 Sum_probs=99.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----------hhhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLI 75 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 75 (170)
..+..+|+++|++|+|||||++++.+..+...+.++.+..........++ .+.+||+||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999998764333334444333322232323 478999999632 23333
Q ss_pred hhhh---cCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--ccCHHHHHHHHHhcC--C
Q 030856 76 PSYI---RDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN--V 146 (170)
Q Consensus 76 ~~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~~~~~~~~~~~~~~--~ 146 (170)
..++ ..++++++++|++++.+... +..|+ .. .+.|+++++||+|+.... +...+.+..++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA----VD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH----HH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3444 46899999999987654432 22222 11 468999999999986532 222345666666654 4
Q ss_pred eEEEeecCCCCChHHHHHHHHhh
Q 030856 147 MFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 147 ~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.++++|++++.++++++++|.+.
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHH
T ss_pred ceEEEeecCCCCHHHHHHHHHHH
Confidence 88999999999999999998764
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.87 E-value=2.4e-23 Score=158.10 Aligned_cols=159 Identities=21% Similarity=0.232 Sum_probs=89.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccceeeeeeeEEEEEeC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (170)
....++|+++|.+++|||||+++|++... ..+..+..+.+.....+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-- 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-- 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE--
Confidence 44678999999999999999999964210 001122223232222222
Q ss_pred CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---hH---HhHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030856 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF---LNTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~ 127 (170)
.....+.||||||+..|.......+..+|++|+|+|++++. ++ ......+..+. . .++| +++|+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~-~--lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR-A--LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH-H--SSCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH-H--cCCCeEEEEEeccccc
Confidence 23467899999999999888888899999999999998642 22 11122222222 2 2565 89999999986
Q ss_pred CCcccC----HHHHHHHH-HhcCC-----eEEEeecCCCCChH--------------HHHHHHHhh
Q 030856 128 EKRQVS----IEEGEAKS-RELNV-----MFIETSAKAGFNIK--------------GCSPTIRRL 169 (170)
Q Consensus 128 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~S~~~~~~v~--------------~~~~~l~~~ 169 (170)
...... ..+...+. ...++ +++++||++|.|++ .|++.|.+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 532211 23344444 44454 79999999999998 788887653
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.87 E-value=1.7e-21 Score=149.84 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=81.8
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC-------------ccc---eeeeeeeEEEEEeCCeEEEEEEEe
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------YQA---TIGIDFLSKTMYLEDRTVRLQLWD 64 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~~i~D 64 (170)
|......+..+|+++|+.|+|||||++++.+...... +.+ ..+..+...........+.+.+||
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 4444456678999999999999999999984322100 000 011122222222222346899999
Q ss_pred cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
|||+.++......++..+|++++++|+++...... ..++..+.. .++|+++|+||+|+.
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 99999999999999999999999999886543333 233344433 378999999999986
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.87 E-value=4.1e-21 Score=132.95 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=86.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc-----
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR----- 80 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 80 (170)
.+.++|+++|.+|+|||||++++++.... ....+..+..........++ ..+.+|||||..++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46899999999999999999999987752 22223333333344444444 47999999998876655444443
Q ss_pred ----CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCC--CeEEEEEeCCCCCCCccc
Q 030856 81 ----DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 81 ----~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~~~~ 132 (170)
++|++++|+++++.. +... ..|+..+....+.+ .|+++|+||+|+...+..
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 169 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL 169 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence 789999999987654 4333 46777777665543 489999999998644443
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.85 E-value=1.1e-20 Score=145.86 Aligned_cols=159 Identities=12% Similarity=0.180 Sum_probs=104.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceee--------------eee--------------------------
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIG--------------IDF-------------------------- 46 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~--------------~~~-------------------------- 46 (170)
..++|+++|.+|+|||||+|+|++.... ....|++. ..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4689999999999999999999987642 22233221 000
Q ss_pred -------------eEEEEEeCCeE--EEEEEEecCChhh---hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 030856 47 -------------LSKTMYLEDRT--VRLQLWDTAGQER---FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR 108 (170)
Q Consensus 47 -------------~~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 108 (170)
....+..+... ..+.+|||||... .......++.++|++++|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00000011000 2589999999665 34556678899999999999998777666655543332
Q ss_pred HhcCCCCeEEEEEeCCCCCCCcccCHH----------HHH-----HHHHh--------cCCeEEEeecC-----------
Q 030856 109 TERGSDVIIVLVGNKTDLVEKRQVSIE----------EGE-----AKSRE--------LNVMFIETSAK----------- 154 (170)
Q Consensus 109 ~~~~~~~~~vvv~nK~D~~~~~~~~~~----------~~~-----~~~~~--------~~~~~~~~S~~----------- 154 (170)
. .+.|+++|+||+|+......+.+ ... .+... .+.++++|||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 36789999999998654311110 111 11111 12479999999
Q ss_pred ---CCCChHHHHHHHHhh
Q 030856 155 ---AGFNIKGCSPTIRRL 169 (170)
Q Consensus 155 ---~~~~v~~~~~~l~~~ 169 (170)
++.|+++++++|.+.
T Consensus 305 ~~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp CCCTTSSHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHH
Confidence 999999999998763
No 178
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.85 E-value=4.3e-22 Score=140.18 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=84.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC-CCCCCcc--------ceeeeeeeEEEEEeCCeEEEEEEEecCCh-------hhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD-KFDNTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 71 (170)
..++|+++|++|+|||||++++.+. ..+.... ++.............+....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998875 4333221 12111111222222344568999999997 444
Q ss_pred hhhhh-------hhhcC-------------CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 72 RSLIP-------SYIRD-------------SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 72 ~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
..... .++.. +++++++.+.+. .+++.... ..+... ..+.++++|+||+|+...++
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCHHH
Confidence 44443 33332 344555555432 12333321 222222 34689999999999876444
Q ss_pred c--CHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 132 V--SIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 132 ~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+ ..+++.+++..++++++++||+++ +++++|.++.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~ 211 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRL 211 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHH
Confidence 3 346778889999999999999999 999999888764
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.85 E-value=1.2e-20 Score=137.45 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=104.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhhhhh---hhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPS---YIRDS 82 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~ 82 (170)
.|+++|++|+|||||++++.+.... ..+ +..+.......+..++ ...+.+||+||..+ ...+... .+..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~-~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPY-PFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCC-TTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCc-ccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 4799999999999999999976432 111 1111111122222332 24689999999632 2222222 24579
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
+.++.++|++ ...+..+..+..++..... ...|.++|+||+|+... ...++..+.....+++++.+||++++|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999998 5567777666666554421 25788999999998653 23344555566668899999999999999
Q ss_pred HHHHHHHhh
Q 030856 161 GCSPTIRRL 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 314 eL~~~i~~~ 322 (416)
T 1udx_A 314 ALKEALHAL 322 (416)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.85 E-value=3.7e-20 Score=138.98 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=78.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------ccceeeeeeeEEEEEeCCeEEEEEEEecC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (170)
.+.++|+++|++|+|||||+++|+....... ..+..+.+.......+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4579999999999999999999986321000 00111111111112222234689999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
|+.++......++..+|++|+|+|+++...... ..++..+ ...++|+++|+||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 999999888889999999999999987533222 2222222 225789999999999864
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.85 E-value=1.5e-20 Score=145.13 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=82.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC--C------CC-----C-----ccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--F------DN-----T-----YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~--~------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
..+..+|+++|.+|+|||||+++|+... . .. . ..+..+.......+... .+.+.+|||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG 86 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPG 86 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcC
Confidence 3567999999999999999999998421 1 00 0 01111111222222233 36799999999
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
+.++......++..+|++|+|+|+++..+.+....|.. +.. .++|+++|+||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 99999999999999999999999998777776665543 332 3799999999999864
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.84 E-value=1.8e-21 Score=140.42 Aligned_cols=105 Identities=21% Similarity=0.210 Sum_probs=76.5
Q ss_pred EEEEEecCChhhh-------------hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030856 59 RLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 59 ~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D 125 (170)
.+.+|||||...+ ..+...++.++|++|++++.++.+... ..|+..+......+.|+++|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 5899999997665 567788899999999999876543222 3334444444445789999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165 (170)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (170)
+........+.++.+....+.+|+++|++++.++++.+..
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 9876655555555556667789999999998887765433
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.84 E-value=2.8e-20 Score=131.92 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=67.2
Q ss_pred EEEEEEecCChhh-------------hhhhhhhhhcCCcEEEEEEeCCChhhH-HhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030856 58 VRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNK 123 (170)
Q Consensus 58 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvv~nK 123 (170)
..+.+|||||... +......++..+|++++|+|.++.... .....++..+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4689999999643 455677788999999999997543211 1111222222 2257899999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCeEEEeecC---C---CCChHHHHHHHHh
Q 030856 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAK---A---GFNIKGCSPTIRR 168 (170)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~---~---~~~v~~~~~~l~~ 168 (170)
+|+........+.++......+..++++|+. + +.|++++++.+.+
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 9987654422232221111222566666554 4 7888888888764
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.84 E-value=1.7e-21 Score=141.55 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=47.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEE--E-------------------EeCC-eEEEEEEEecCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT--M-------------------YLED-RTVRLQLWDTAG 67 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~g 67 (170)
++|+++|.+|+|||||+|++++........|..+.+..... . .+++ ...++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987643222222221111111 1 1122 246899999999
Q ss_pred hhh----hhhhhh---hhhcCCcEEEEEEeCCCh
Q 030856 68 QER----FRSLIP---SYIRDSSVAVVVYDVASR 94 (170)
Q Consensus 68 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 94 (170)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 346889999999999875
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.83 E-value=1e-19 Score=126.42 Aligned_cols=122 Identities=12% Similarity=0.098 Sum_probs=81.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhh-------hh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-------SY 78 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~ 78 (170)
...++|+++|.+|+|||||+|++++.... ....+..+.+......... ...+.+|||||..++..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999987653 1212222222222233333 36799999999866543222 12
Q ss_pred --hcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCC--CeEEEEEeCCCCCCCcc
Q 030856 79 --IRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 79 --~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~~~ 131 (170)
..++|++++|+|++.. ++... ..|+..+....+.+ .|+++|+||+|+...+.
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 2379999999998653 34332 46777776655433 69999999999875543
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=137.26 Aligned_cols=157 Identities=13% Similarity=0.192 Sum_probs=81.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCc-------cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-------
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------- 72 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------- 72 (170)
-.++|+++|++|+|||||++.+.+...+ ... .++.............+....+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4678999999999999999999987653 111 1122212212222223334578999999976431
Q ss_pred hh------------------hhhhhcCCcE--EEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 73 SL------------------IPSYIRDSSV--AVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 73 ~~------------------~~~~~~~~d~--~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
.. .+.++..+++ ++|+.+.+. .+++... .|+..+. .++|+++|+||+|+...++
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 11 1223344444 444444321 2344433 4555543 4799999999999876655
Q ss_pred cCH--HHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 132 VSI--EEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+.. +++...+..++++++++|+.++.+++++|..+.+.
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 544 67788888899999999999999999988877654
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.83 E-value=5.8e-19 Score=136.50 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=83.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCC--CCC-----------Cc-----cceeeeeeeEEEEEeC-----CeEEEEE
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----------TY-----QATIGIDFLSKTMYLE-----DRTVRLQ 61 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~--~~~-----------~~-----~~~~~~~~~~~~~~~~-----~~~~~~~ 61 (170)
...+..+|+++|..|+|||||+++|+... ... .+ ....+.......+.+. +..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34567899999999999999999997531 110 00 1111122222222222 2347899
Q ss_pred EEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 62 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
+|||||+.++......++..+|++|+|+|+++....+....|. ... ..++|+++|+||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QAN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHH---HcCCCEEEEEeCCCccc
Confidence 9999999999999999999999999999999875555544442 222 24789999999999864
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.83 E-value=2e-21 Score=136.91 Aligned_cols=134 Identities=17% Similarity=0.148 Sum_probs=109.0
Q ss_pred HHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh-hHHhHH
Q 030856 24 SIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTS 101 (170)
Q Consensus 24 tll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~ 101 (170)
+|+.++..+.+. ..+.||.+..+. .....++ ++.+||+ ++.++.+++.++.++|++|+|||+++++ +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 677788877777 788899884443 3322222 6899999 8889999999999999999999999987 688889
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeecCCCCChHHHHHHHHh
Q 030856 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 102 ~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
.|+..+.. .++|+++|+||+|+.+.+.+ +++++++..++ +++++|||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99887754 47999999999998654433 45677777777 89999999999999999998754
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=5.7e-19 Score=136.42 Aligned_cols=118 Identities=23% Similarity=0.267 Sum_probs=83.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcC--CCCC-----------Cc-----cceeeeeeeEEEEEeCCeEEEEEEEecC
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------TY-----QATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~--~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (170)
+..+..+|+++|.+|+|||||+++|+.. .... .+ .+..+........... ...+.+||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECc
Confidence 4466799999999999999999999852 2110 00 0111111112223333 3679999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
|+.++......++..+|++|+|+|+++..+.+....|.. +.. .++|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999998889999999999999999998766666555533 333 3789999999999864
No 190
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=6.6e-20 Score=132.73 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=96.1
Q ss_pred EEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEE
Q 030856 50 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIV 118 (170)
Q Consensus 50 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~v 118 (170)
.+.+++ +.+.+|||+|++.++..+..++++++++|||||+++ ..+|+....|+..+.... .+++|++
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 344444 789999999999999999999999999999999998 889999999999987653 3689999
Q ss_pred EEEeCCCCCCCcc---c---------------------------CHHHHHHHH-----Hh--------cCCeEEEeecCC
Q 030856 119 LVGNKTDLVEKRQ---V---------------------------SIEEGEAKS-----RE--------LNVMFIETSAKA 155 (170)
Q Consensus 119 vv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S~~~ 155 (170)
||+||+|+..++. + ..+++..++ .. .++.+++|||++
T Consensus 289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d 368 (402)
T 1azs_C 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD 368 (402)
T ss_dssp EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence 9999999854322 1 135566653 22 246788999999
Q ss_pred CCChHHHHHHHHhh
Q 030856 156 GFNIKGCSPTIRRL 169 (170)
Q Consensus 156 ~~~v~~~~~~l~~~ 169 (170)
+.||+++|+++.+.
T Consensus 369 ~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 369 TENIRRVFNDCRDI 382 (402)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999998764
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.80 E-value=1.5e-20 Score=135.19 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=94.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-C-----ccceee----------------------ee-------------
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-T-----YQATIG----------------------ID------------- 45 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~-----~~~~~~----------------------~~------------- 45 (170)
....+|+++|.+|+|||||+|+|.+..+.+ . ..|+.. .+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999887631 1 112200 00
Q ss_pred --------eeEEEEEeC-CeEEEEEEEecCChh-------------hhhhhhhhhhcCCcE-EEEEEeCCChhhHHhHHH
Q 030856 46 --------FLSKTMYLE-DRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSV-AVVVYDVASRQSFLNTSK 102 (170)
Q Consensus 46 --------~~~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~-~i~v~d~~~~~~~~~~~~ 102 (170)
.......+. .....+.+|||||.. .+..+...|+.+++. ++++.+++.. +... .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-H
Confidence 000000000 012468999999953 345566777766654 4445665532 2221 1
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHH--HHHhcCC-eEEEeecCCCCChHHHHHHHHh
Q 030856 103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA--KSRELNV-MFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 103 ~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~--~~~~~~~-~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
+...+......+.|+++|+||+|+.+......+..+. +....+. +++++||+++.|++++++++.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2222333334578999999999987544322221111 1111232 6788999999999999998864
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=1.2e-17 Score=119.52 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhhhh--
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR-- 72 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-- 72 (170)
++|+++|.+|+|||||+|++.+........|..+.+.....+.+++. ...+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987643222222222222222333332 1479999999976542
Q ss_pred --hh---hhhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHH------------------------------
Q 030856 73 --SL---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV------------------------------ 107 (170)
Q Consensus 73 --~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~------------------------------ 107 (170)
.+ ...+++++|++++|+|+++. ++++.+..+..++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 23357899999999999852 2233322111111
Q ss_pred ----------H-------------------Hh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC
Q 030856 108 ----------R-------------------TE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154 (170)
Q Consensus 108 ----------~-------------------~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 154 (170)
. .. .....|+++++|+.|..-......+..+.++...+.+++++||+
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 0 00 01248999999999854222334577788888889999999965
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.78 E-value=2.9e-19 Score=120.64 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=94.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeee--------------EEEEEe----------------CCeE
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL--------------SKTMYL----------------EDRT 57 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~----------------~~~~ 57 (170)
+..+|+++|.+|+|||||++++...............+.. ...... ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4578999999999999999999865321111111111110 001101 1123
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~ 137 (170)
..+.+|||+|..... ..+....+.+++|+|+++... ....+... .+.|+++|+||+|+...+....++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 468899999851111 111135788999999876432 11111111 1477899999999865433455666
Q ss_pred HHHHHhc--CCeEEEeecCCCCChHHHHHHHHhh
Q 030856 138 EAKSREL--NVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 138 ~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
...++.. +++++++||++|.|+++++++|.+.
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 6666654 4699999999999999999999864
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.77 E-value=2.3e-17 Score=124.41 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=82.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC----------------------CCCccceeeeeeeEEEEEeCCeEEEEEEEe
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 64 (170)
.+..||+|+|..++|||||..+|+...- +.+..+..++......+.+ ..+++.++|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEe
Confidence 3578999999999999999999973210 0111222222222333334 347899999
Q ss_pred cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
|||+.+|.......+.-+|++|+|+|+...-.-+....|. .... .++|.++++||+|+..
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHH---hCCceEEEEecccchh
Confidence 9999999999999999999999999999765555555553 3333 4799999999999854
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.77 E-value=8.2e-21 Score=128.66 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=90.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeee------------EEEEEeC-CeE-----------------
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLE-DRT----------------- 57 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 57 (170)
+.++|+++|.+|||||||++++....+...+.++...++. ......+ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987554444455444432 1111111 110
Q ss_pred --EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH
Q 030856 58 --VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 58 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~ 135 (170)
..+.++|++|.-... ..+-...+..+.+.|..+...... ..... .+.|.++|+||+|+.+.+....+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 134555555521100 011112344556666432111100 00001 13677999999998654445667
Q ss_pred HHHHHHHhc--CCeEEEeecCCCCChHHHHHHHHhh
Q 030856 136 EGEAKSREL--NVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 136 ~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+...+++.. +++++++||++|.|++++|++|.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 777777754 5799999999999999999999864
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.77 E-value=4e-19 Score=127.83 Aligned_cols=101 Identities=17% Similarity=0.078 Sum_probs=67.7
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HH
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IE 135 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~ 135 (170)
+.+.||||||... .....+..+|++++|+|....+.++.+... -.+.|+++|+||+|+....... ..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 5789999999432 233445889999999998765444333211 1246889999999985432221 11
Q ss_pred HHHHHHH-------hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 136 EGEAKSR-------ELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 136 ~~~~~~~-------~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+...... .++.+++++||++|.|+++++++|.+.
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 1111111 125789999999999999999999764
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.73 E-value=3.8e-18 Score=128.72 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=82.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEE-----EEeC-----------------------
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKT-----MYLE----------------------- 54 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~----------------------- 54 (170)
....++|+++|.+|+|||||+|+|++.... ....+++........ ...+
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 346789999999999999999999998763 222332211000000 0000
Q ss_pred CeE---------EEEEEEecCChhh-----------hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC
Q 030856 55 DRT---------VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD 114 (170)
Q Consensus 55 ~~~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 114 (170)
+.. ..+.+|||||... +......++..+|++++|+|+++....+....++..+.. .+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence 000 2589999999764 445667788999999999999875444555556555432 35
Q ss_pred CeEEEEEeCCCCCCCcc
Q 030856 115 VIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 115 ~~~vvv~nK~D~~~~~~ 131 (170)
.|+++|+||+|+....+
T Consensus 219 ~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQ 235 (550)
T ss_dssp GGEEEEEECGGGSCHHH
T ss_pred CCEEEEEECCCccCHHH
Confidence 88999999999875433
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.73 E-value=1.4e-17 Score=131.03 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=84.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC------------CC----Cccc--eeeeeeeEEEEE------------eCCe
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF------------DN----TYQA--TIGIDFLSKTMY------------LEDR 56 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~------------~~----~~~~--~~~~~~~~~~~~------------~~~~ 56 (170)
.+..||+++|+.++|||||+++|+.... .+ +..+ |.........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4568999999999999999999986411 00 0111 111111111222 2344
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
.+.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++....|.... ..++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence 789999999999999999999999999999999999987777766554332 2478999999999985
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.72 E-value=1.4e-16 Score=114.60 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=88.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccc--eeeeeeeEEEEEeCC-------------------eEEEEEEEecCCh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQ 68 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~ 68 (170)
++|+++|.+|+|||||+|++.+........+ |...+.... .+++ ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 6899999999999999999997643211111 111111111 1111 2357999999997
Q ss_pred hhhh----hh---hhhhhcCCcEEEEEEeCCCh----------hhHHhHHHH---H------------H-----------
Q 030856 69 ERFR----SL---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKW---I------------D----------- 105 (170)
Q Consensus 69 ~~~~----~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~---~------------~----------- 105 (170)
.... .+ ....++.+|++++|+|+++. +.+..+..+ + .
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 6532 12 23357899999999999851 122211110 0 0
Q ss_pred ---------HHHHh--c----------------------CCCCeEEEEEeCCCCC--CC-cccCHHHHHHHHHhcCCeEE
Q 030856 106 ---------EVRTE--R----------------------GSDVIIVLVGNKTDLV--EK-RQVSIEEGEAKSRELNVMFI 149 (170)
Q Consensus 106 ---------~~~~~--~----------------------~~~~~~vvv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~ 149 (170)
.+... . -...|+++++||.|.. +. .....+..+.+++..+.+++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv 239 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV 239 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEE
Confidence 00000 0 0137999999999842 21 13446778888888899999
Q ss_pred EeecCCCC
Q 030856 150 ETSAKAGF 157 (170)
Q Consensus 150 ~~S~~~~~ 157 (170)
++||+...
T Consensus 240 ~iSAk~E~ 247 (368)
T 2dby_A 240 VVSARLEA 247 (368)
T ss_dssp EECHHHHH
T ss_pred EeechhHH
Confidence 99987643
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.71 E-value=3.7e-18 Score=122.43 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=60.8
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~ 137 (170)
+.+.++||+|.... .......+|++++|+|.+++...+.+.. .+ ...|.++|+||+|+.+..... ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence 46899999995421 2344678999999999986543222211 11 246788999999985321110 111
Q ss_pred HHHHH----------hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 138 EAKSR----------ELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 138 ~~~~~----------~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
..+.. ..+.+++.+||++|.|+++++++|.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~ 276 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF 276 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 12211 124578999999999999999999764
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.70 E-value=1e-16 Score=110.76 Aligned_cols=109 Identities=16% Similarity=0.014 Sum_probs=66.4
Q ss_pred EEEEEEecCChhhhhhhhh------hhhcCCcEEEEEEeCCChhhHHhHHHHHH-HHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856 58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVVVYDVASRQSFLNTSKWID-EVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~vvv~nK~D~~~~~ 130 (170)
+.+.+|||||..+...... ..+.. +++++++|............... ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4789999999876543321 23455 88888988754222222111111 1111111368999999999986533
Q ss_pred ccCHHHHHH----------------------------HHHhcC--CeEEEeecCCCCChHHHHHHHHhh
Q 030856 131 QVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 131 ~~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+. ++..+ ++..++ ++++++||++++|+++++++|.+.
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~ 254 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 254 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHH
Confidence 21 11111 123333 489999999999999999999864
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.7e-16 Score=110.22 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=99.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhhhhhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD 81 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 81 (170)
..+|+++|.||+|||||+|+|++........|..+.+.....+.+++ .+++++||||..+- .......++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999999776545556666666666666666 46889999995321 1112234678
Q ss_pred CcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--------CcccCHHHHHHHHHhcCCeEEEee
Q 030856 82 SSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE--------KRQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 82 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~S 152 (170)
+|++++|+|+++|.. ++.+...+....... .+.|..++.||.|... ....+.++.+.+...+.+.--++-
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~ 228 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA 228 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence 999999999998732 333333333222111 3567788889999642 233456666666666665333333
Q ss_pred cCCCCChHHHHHH
Q 030856 153 AKAGFNIKGCSPT 165 (170)
Q Consensus 153 ~~~~~~v~~~~~~ 165 (170)
...+...+++.+.
T Consensus 229 ~~~nv~eddl~d~ 241 (376)
T 4a9a_A 229 FRCDATVDDLIDV 241 (376)
T ss_dssp ECSCCCHHHHHHH
T ss_pred ecccCCHHHHHHH
Confidence 3444555555543
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.68 E-value=2.2e-15 Score=116.98 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=82.2
Q ss_pred CCCCCC-CCceeEEEEcCCCCCHHHHHHHHhcC--------CCC----------CCccceeeeeeeEEEEEeCC-----e
Q 030856 1 MAPVSA-LAKYKLVFLGDQSVGKTSIITRFMYD--------KFD----------NTYQATIGIDFLSKTMYLED-----R 56 (170)
Q Consensus 1 m~~~~~-~~~~~i~i~G~~~~GKStll~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~-----~ 56 (170)
|+...+ .+-.||+|+|+.++|||||.++|+.. ... .+..+..++......+.+.+ .
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 444333 45579999999999999999998732 110 11122222222233333322 3
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
.+.+.++||||+.+|.......++-+|++|+|+|+...-..+....|..... .++|.++++||+|+.
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence 5789999999999999999999999999999999987644455444433332 369999999999975
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.68 E-value=3.4e-17 Score=117.20 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=63.5
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--H
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--E 135 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~--~ 135 (170)
+.+.++||||...... .....+|++++|+|.+....++.+... . .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5799999999654332 245889999999998765433222211 0 1367889999999864322211 1
Q ss_pred HHHHHHHhc-------CCeEEEeecCCCCChHHHHHHHHhh
Q 030856 136 EGEAKSREL-------NVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
+.+...... ..+++++||++|.|+++++++|.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 222211121 4578999999999999999998763
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.66 E-value=2.8e-17 Score=126.05 Aligned_cols=115 Identities=15% Similarity=0.225 Sum_probs=80.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC--C------CC-----C---ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK--F------DN-----T---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~--~------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 73 (170)
.||+|+|+.++|||||.++|+... . .. + .....+++.......+....+++.++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 589999999999999999997321 1 00 0 011112223333333444557799999999999999
Q ss_pred hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
.....+.-+|++|+|+|+...-.-+....| ..... .++|.++++||+|+..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~---~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK---MGIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH---HTCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCeEEEEecccccc
Confidence 999999999999999999875433443444 23333 2688899999999754
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.66 E-value=6e-16 Score=119.63 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=96.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeee-----------------------------------------
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGI----------------------------------------- 44 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~----------------------------------------- 44 (170)
....+|+++|.+++|||||+|++++..+ +.....++..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3457999999999999999999999765 3221111100
Q ss_pred ---------eeeEEEEEeCCeEEEEEEEecCChhh-------------hhhhhhhhh-cCCcEEEEEEeCCChhhHHhHH
Q 030856 45 ---------DFLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVVVYDVASRQSFLNTS 101 (170)
Q Consensus 45 ---------~~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~ 101 (170)
+.....+..++ ...+.++||||... ...+...++ ..+|++++|+|++++..-....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00000011111 12478999999433 233444455 4789999999998643222222
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHH-H-HHhcC-CeEEEeecCCCCChHHHHHHHHh
Q 030856 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-K-SRELN-VMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 102 ~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
..+..+. ..+.|+++|+||+|+............. . ....+ .+++.+||++|.|++++++.+.+
T Consensus 208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2323332 3478999999999997654433221110 0 00123 26788999999999999998875
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.61 E-value=2e-15 Score=106.34 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=80.6
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC-HHHHHHHHHhcC
Q 030856 68 QERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELN 145 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~-~~~~~~~~~~~~ 145 (170)
++.+..+.+.++.++|++++|+|+++|+ +++.+..|+..+.. .++|+++|+||+|+.+.+++. .++...+++..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667778888999999999999999986 88888899886654 479999999999987544322 355566677778
Q ss_pred CeEEEeecCCCCChHHHHHHHHh
Q 030856 146 VMFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 146 ~~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
++++++||++|.|++++++.+..
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHhhccC
Confidence 99999999999999999988754
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.60 E-value=4.3e-16 Score=111.21 Aligned_cols=102 Identities=12% Similarity=0.048 Sum_probs=61.9
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHH
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE 136 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~ 136 (170)
...+.++||+|..... ......+|.+++++|....+..+.+.... . ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence 3578999999965321 23356899999999986543222111111 1 23457777999974432222222
Q ss_pred HHHHHHh----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 137 GEAKSRE----------LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 137 ~~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+++... ++.+++.+|++++.|++++++.|.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 2333221 14578999999999999999998763
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=95.32 Aligned_cols=102 Identities=7% Similarity=-0.060 Sum_probs=68.9
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHH---hc--CCCCeEEEEEeCC-CCCCCcccCHHHHHH
Q 030856 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT---ER--GSDVIIVLVGNKT-DLVEKRQVSIEEGEA 139 (170)
Q Consensus 66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~---~~--~~~~~~vvv~nK~-D~~~~~~~~~~~~~~ 139 (170)
+|+..++.+|+.|+.++|++|||+|.+|.+.++ .+..+..+.. .. ..++|++|++||. |+... .+..+..+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence 478899999999999999999999999986654 4444433322 21 2578999999995 66433 33333332
Q ss_pred HHH----hcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 140 KSR----ELNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 140 ~~~----~~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
... .+.+.+..|||.+|+|+.+.++||.+.+
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 221 2456899999999999999999998754
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.54 E-value=4.6e-13 Score=96.95 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=59.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhh-
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER- 70 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 70 (170)
...+++++|++|+|||||+|+|.+... .....|..+.+.....+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357899999999999999999999765 4444444444444444444431 13589999999432
Q ss_pred ------hhhhhhhhhcCCcEEEEEEeCCC
Q 030856 71 ------FRSLIPSYIRDSSVAVVVYDVAS 93 (170)
Q Consensus 71 ------~~~~~~~~~~~~d~~i~v~d~~~ 93 (170)
+.......+..+|++++++|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455789999999999863
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=103.80 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=51.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhhhh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR 72 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 72 (170)
..++|+++|.+|+|||||+|++.+........|..+.+.....+.+++. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4589999999999999999999987654444444444433334433331 2358999999977543
Q ss_pred h-------hhhhhhcCCcEEEEEEeCCChh
Q 030856 73 S-------LIPSYIRDSSVAVVVYDVASRQ 95 (170)
Q Consensus 73 ~-------~~~~~~~~~d~~i~v~d~~~~~ 95 (170)
+ ....+++++|++++|+|+++.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 4456788999999999998543
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=94.28 Aligned_cols=103 Identities=7% Similarity=-0.078 Sum_probs=73.3
Q ss_pred cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHH----HHHhc-CCCCeEEEEEeC-CCCCCCcccCHHHHH
Q 030856 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE----VRTER-GSDVIIVLVGNK-TDLVEKRQVSIEEGE 138 (170)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----~~~~~-~~~~~~vvv~nK-~D~~~~~~~~~~~~~ 138 (170)
.+|+...+.+|+.|+.++|++|||+|++|++.++ .+..+.+ +.... ..++|++|++|| .|+... .+..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHH
Confidence 4678899999999999999999999999987765 3333332 22221 258999999997 577543 3333332
Q ss_pred HHHH----hcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856 139 AKSR----ELNVMFIETSAKAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 139 ~~~~----~~~~~~~~~S~~~~~~v~~~~~~l~~~i 170 (170)
+... .+.+.+..|||.+|+|+.+.++||.+.+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 2211 2456899999999999999999998754
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.27 E-value=3.6e-13 Score=97.27 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=81.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC------CCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-------hh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI 75 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~ 75 (170)
..+++++|.+|+|||||+|+|.+. .......+..+.+. .....+. .+.++||||...... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 468999999999999999999976 22222222222222 2222332 278999999542221 11
Q ss_pred hhhh---cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEee
Q 030856 76 PSYI---RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 76 ~~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 152 (170)
...+ ...+.++++++....-.+..+.. +......+.|+++++||.|....... ......+.+..+..+.+.+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCC
Confidence 1122 57899999999742211111110 11122357899999999998654433 2333445566666666666
Q ss_pred cCCCCCh
Q 030856 153 AKAGFNI 159 (170)
Q Consensus 153 ~~~~~~v 159 (170)
+.+..++
T Consensus 312 ~~~~~~~ 318 (369)
T 3ec1_A 312 KRYAAEF 318 (369)
T ss_dssp GGGTTTC
T ss_pred chhhhhc
Confidence 6554444
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=4.3e-11 Score=87.36 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=70.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCc----cceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--------------
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------------- 71 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------- 71 (170)
++++++|++|+|||||++.+.+..+.... .+..............+....++++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 57999999999999999999987543211 111111111111122222346899999884321
Q ss_pred hhhhhh----hh---------cC--CcE-EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--
Q 030856 72 RSLIPS----YI---------RD--SSV-AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-- 133 (170)
Q Consensus 72 ~~~~~~----~~---------~~--~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~-- 133 (170)
...... +. .. .|+ ++|+.|...+-+-.+ . .+.+....+.|+++|.||+|.....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-i----eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-L----VTMKKLDSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-H----HHHHHTCSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-H----HHHHHHhhCCCEEEEEcchhccchHHHHHH
Confidence 011111 11 11 233 555666554322222 1 2222223579999999999976543321
Q ss_pred HHHHHHHHHhcCCeEEEeecC
Q 030856 134 IEEGEAKSRELNVMFIETSAK 154 (170)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~S~~ 154 (170)
...........|++++.+|.-
T Consensus 198 ~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHcCCcEEecCCC
Confidence 122222234467777777753
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.23 E-value=3.6e-11 Score=86.79 Aligned_cols=95 Identities=20% Similarity=0.323 Sum_probs=72.2
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH----HHHHH
Q 030856 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG----EAKSR 142 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~----~~~~~ 142 (170)
..+.|.+....+.+.++++++|+|+++++ ..|...+.... .+.|+++|+||+|+.... ...+.. +..++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35778888999999999999999999863 34444555544 378999999999986533 233333 33466
Q ss_pred hcCC---eEEEeecCCCCChHHHHHHHHh
Q 030856 143 ELNV---MFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 143 ~~~~---~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
..|+ .++.+||++|.|++++++.|.+
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 6777 7999999999999999999865
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.21 E-value=1.3e-11 Score=92.14 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=83.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh------cCCCC----CCcccee-----------eeeeeEEEEE-------------
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFM------YDKFD----NTYQATI-----------GIDFLSKTMY------------- 52 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~------------- 52 (170)
.+...|+++|.+|+||||++++|. +.+.- +.+.+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 32210 0000100 0111110000
Q ss_pred eCCeEEEEEEEecCChhhhhh-hh---hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCC
Q 030856 53 LEDRTVRLQLWDTAGQERFRS-LI---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTD 125 (170)
Q Consensus 53 ~~~~~~~~~i~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvv~nK~D 125 (170)
.....+.+.|+||||...... .. ... +..+|.+++|+|++.... .......+.. .+|+ .+|+||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh----hcCceEEEEeCCc
Confidence 000235789999999653211 11 111 237899999999986432 1111222222 2564 78889999
Q ss_pred CCCCcccCHHHHHHHHHhcCCeE------------------EEeecCCCCC-hHHHHHHHHh
Q 030856 126 LVEKRQVSIEEGEAKSRELNVMF------------------IETSAKAGFN-IKGCSPTIRR 168 (170)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-v~~~~~~l~~ 168 (170)
...... .+.......+.|+ +.+|+..|.| ++++++++.+
T Consensus 252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 753221 1222333444433 3468888998 9999998864
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.20 E-value=7.7e-13 Score=95.48 Aligned_cols=136 Identities=12% Similarity=0.140 Sum_probs=74.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC-------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-------
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------- 74 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------- 74 (170)
..+++++|.+|+|||||+|+|.+..... ...+..+ ........... +.++||||......+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence 4689999999999999999999763111 1112222 12222223322 789999995432211
Q ss_pred -hhhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEe
Q 030856 75 -IPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET 151 (170)
Q Consensus 75 -~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
...+ ....+.++++++......+..+.. +......+.|+++++||.|....... ......+.+..|..+++.
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSS
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCC
Confidence 1111 246788889888742211111110 11122357899999999998654333 233344455556554444
Q ss_pred ecC
Q 030856 152 SAK 154 (170)
Q Consensus 152 S~~ 154 (170)
++.
T Consensus 310 ~~~ 312 (368)
T 3h2y_A 310 TPE 312 (368)
T ss_dssp CHH
T ss_pred chh
Confidence 443
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.18 E-value=7.3e-10 Score=80.84 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=82.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc-eeeeee--eEEEEEeCCeEEEEEEEecCChhhhhhhhhhh-----hc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR 80 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 80 (170)
...++++|++|+|||||+|.+.+...+..-.- ..+.+. ........ ....+.+||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 45899999999999999999998543221110 001000 01111111 11147899999854322222222 33
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CCcccCHH----HHHHHHH----hcC
Q 030856 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-------EKRQVSIE----EGEAKSR----ELN 145 (170)
Q Consensus 81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~-------~~~~~~~~----~~~~~~~----~~~ 145 (170)
..+..++ ++...... +. ......+.. .+.|+++|.||.|+. .-+....+ ..++++. ..+
T Consensus 148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK-ND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCCH-HH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCccH-HH-HHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555 67652111 11 111122222 368999999999864 11222222 2333331 222
Q ss_pred ---CeEEEeec--CCCCChHHHHHHHHhhC
Q 030856 146 ---VMFIETSA--KAGFNIKGCSPTIRRLI 170 (170)
Q Consensus 146 ---~~~~~~S~--~~~~~v~~~~~~l~~~i 170 (170)
..++.+|+ .++.|++++.+.+.+.+
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 36788999 66677999999987653
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.12 E-value=8.5e-11 Score=81.42 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=69.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCCc--------cceeeeeeeEEEEEeCC--eEEEEEEEecCChhhhhh-----
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY--------QATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRS----- 73 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~----- 73 (170)
.++++++|+.|+|||||++.+.+...+... .+... ........... ....++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~-~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTV-EIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCC-SCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcce-eeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 478999999999999999999975432210 00000 00111111111 123678999998321100
Q ss_pred -hhhh----------------------hhcCCcEEEEEEeCC-ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856 74 -LIPS----------------------YIRDSSVAVVVYDVA-SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 74 -~~~~----------------------~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~ 129 (170)
.... .+..+++.+++.|.. .+-.-.. ...+..+. .. .++++|++|+|....
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCH
Confidence 0000 122468888888854 2211111 22222332 23 899999999997653
Q ss_pred cccC--HHHHHHHHHhcCCeEEE
Q 030856 130 RQVS--IEEGEAKSRELNVMFIE 150 (170)
Q Consensus 130 ~~~~--~~~~~~~~~~~~~~~~~ 150 (170)
.+.. ....+.....+++.+++
T Consensus 156 ~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 156 EEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHcCccccC
Confidence 3221 12333344555665553
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.11 E-value=1e-10 Score=84.48 Aligned_cols=95 Identities=23% Similarity=0.293 Sum_probs=70.3
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH----HHHH
Q 030856 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSR 142 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~----~~~~ 142 (170)
.++.|.+....+..+++++++|+|++++++ .|...+.... .+.|+++|+||+|+.... ...+... ..++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467888989999999999999999998763 2333334433 378999999999987532 2233333 3356
Q ss_pred hcCC---eEEEeecCCCCChHHHHHHHHh
Q 030856 143 ELNV---MFIETSAKAGFNIKGCSPTIRR 168 (170)
Q Consensus 143 ~~~~---~~~~~S~~~~~~v~~~~~~l~~ 168 (170)
..|. .++.+||++|.|++++++.+.+
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence 6676 7899999999999999999864
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.07 E-value=3.9e-10 Score=78.56 Aligned_cols=98 Identities=10% Similarity=0.109 Sum_probs=67.2
Q ss_pred EEecCChh-hhhhhhhhhhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH
Q 030856 62 LWDTAGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE 138 (170)
Q Consensus 62 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~ 138 (170)
|-..||+. .........+..+|+++.|+|+.+|.+... +..++ .+.|.++|+||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 44578865 445566677899999999999999876643 33322 4789999999999865211 12223
Q ss_pred HHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 139 AKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 139 ~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
++.+..+++++.+||.++.|++++++.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHH
Confidence 3444557899999999999999999887653
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.83 E-value=2.2e-08 Score=73.55 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=78.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC------CC---C-CCccc-----------eeeeeeeEEEEEeC------------
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD------KF---D-NTYQA-----------TIGIDFLSKTMYLE------------ 54 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~------~~---~-~~~~~-----------~~~~~~~~~~~~~~------------ 54 (170)
++..|+++|++|+||||++.+|... +. . +.+.+ ..+..+.......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999888731 11 0 00100 00111111000000
Q ss_pred -CeEEEEEEEecCChhhhhhh----hh--hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 55 -DRTVRLQLWDTAGQERFRSL----IP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 55 -~~~~~~~i~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
...+.+.|+||+|....... .. .....+|.+++|+|++.... .......+... -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh---CCCeEEEEECCCCc
Confidence 01257899999995432111 11 11336899999999875422 22222223222 23456788999974
Q ss_pred CCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (170)
. ....+.......+.|+..++. |+++++
T Consensus 253 ~----~gG~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 253 A----KGGGALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp S----SHHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred c----cccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence 3 234455666678888887775 666654
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.81 E-value=6.9e-09 Score=76.31 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=47.6
Q ss_pred EEEEEEEecCChhhhhh-hh---hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC-e-EEEEEeCCCCCC
Q 030856 57 TVRLQLWDTAGQERFRS-LI---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV-I-IVLVGNKTDLVE 128 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~vvv~nK~D~~~ 128 (170)
.+.+.|+||||...... .. ... +..+|.+++|+|++... ........+. ... | ..+|+||+|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 35689999999654211 11 111 22689999999986542 2222222221 234 5 788899999742
Q ss_pred CcccCHHHHHHHHHhcCCeEEEe
Q 030856 129 KRQVSIEEGEAKSRELNVMFIET 151 (170)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
. ...+.......+.++..+
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 123344566667665554
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.80 E-value=2.7e-09 Score=74.32 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=35.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
...++++++|.||+|||||+|++.+.... ....+..+.+.. ....+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 35689999999999999999999987642 222333322222 122222 57899999954
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.74 E-value=5.1e-09 Score=72.22 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=34.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
++++++|.+|+|||||+|++.+..... ..++.+.+........+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 599999999999999999999876532 11222222211122222 2578999999653
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.67 E-value=1.7e-08 Score=69.54 Aligned_cols=94 Identities=13% Similarity=0.027 Sum_probs=62.5
Q ss_pred cCChhh-hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh
Q 030856 65 TAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (170)
Q Consensus 65 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~ 143 (170)
.||+.. ........+.++|+++.|+|+.+|.+..... +. + . +.|.++|+||+|+.+... .+...++.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 466542 2335666788999999999999886654311 01 1 1 689999999999865321 1222334445
Q ss_pred cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856 144 LNVMFIETSAKAGFNIKGCSPTIRRL 169 (170)
Q Consensus 144 ~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (170)
.+.++ .+||.++.|++++++.+.+.
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 67888 99999999999999887653
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.66 E-value=5e-08 Score=71.59 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=55.0
Q ss_pred EEEEEEEecCChhh--hhh----hhhh--hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856 57 TVRLQLWDTAGQER--FRS----LIPS--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 57 ~~~~~i~D~~g~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~ 128 (170)
.+.+.++||||... ... .... .....+.+++|+|+..... .......+.... .+..+|+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~~---~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQAS---PIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHHC---SSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhccc---CCcEEEEecccccc
Confidence 35678999999543 111 1111 1225689999999875422 222223333322 34677889999642
Q ss_pred CcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (170)
....+.......+.|+..++. |++++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 334566667778999888775 66654
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.59 E-value=4.2e-08 Score=74.54 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=38.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCcccee-eeeeeEEEE--Ee-CCeEEEEEEEecCChhh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDFLSKTM--YL-EDRTVRLQLWDTAGQER 70 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~ 70 (170)
.+..+|+|+|.||+|||||+|+|.+....-....+. +.....+.+ .. ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456889999999999999999999875321111111 111111111 11 12234689999999553
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.58 E-value=2.9e-07 Score=64.56 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=55.8
Q ss_pred EEEEEEecCChhh--hhh-hhh-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 030856 58 VRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128 (170)
Q Consensus 58 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~ 128 (170)
+.+.++||||... ... +.. .....+|.+++|.|.... .........+.. ..+ ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5689999999765 221 111 124578999999998643 222222222222 244 677889999642
Q ss_pred CcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (170)
....+...+...+.++..++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23445667778888887776 4666654
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.50 E-value=5.1e-07 Score=69.26 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~ 35 (170)
.++++|+.|+|||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999986433
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=7.3e-08 Score=67.76 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=61.2
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHHhcCCeEE
Q 030856 73 SLIPSYIRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNVMFI 149 (170)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 149 (170)
.+.+..+.++|.+++|+|+.+|.. ...+..++... ...++|.++|+||+|+.+.... ..+...+..+..|.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~---~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV---EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH---HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH---HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 345556889999999999987654 33334333222 2357899999999998754320 11233333345578999
Q ss_pred EeecCCCCChHHHHHHH
Q 030856 150 ETSAKAGFNIKGCSPTI 166 (170)
Q Consensus 150 ~~S~~~~~~v~~~~~~l 166 (170)
.+|+.++.|+++++...
T Consensus 155 ~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPHF 171 (307)
T ss_dssp ECCHHHHTTCTTTGGGG
T ss_pred EEecCCCCCHHHHHhhc
Confidence 99999999998876543
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.36 E-value=1.8e-06 Score=61.30 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=75.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCCc-cce--------------------eeeeeeEEEEEe-------------
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QAT--------------------IGIDFLSKTMYL------------- 53 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~-~~~--------------------~~~~~~~~~~~~------------- 53 (170)
+.--++++|++|+||||+++.+.+...+... ... .+..+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 4567899999999999999998753111100 000 000010000000
Q ss_pred CCeEEEEEEEecCChhhhhhhh-hh-----hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856 54 EDRTVRLQLWDTAGQERFRSLI-PS-----YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~ 127 (170)
......+.+.|++|........ .. ..-..|-.+++.|..... .+...+..+.... + ...+++||.|..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~~ 281 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDAD 281 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGGC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCCc
Confidence 0011345679999964322211 11 122478899999976432 2333333333332 2 235667999952
Q ss_pred CCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161 (170)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (170)
. ....+...+...+.|+..++ +|+++++
T Consensus 282 a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 282 A----RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp S----CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred c----chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2 12445667778888888877 6666543
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.36 E-value=4.6e-08 Score=72.85 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=58.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--hhhhh--------h
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLI--------P 76 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~ 76 (170)
..+..|+++|.+|+||||+.++|...... ...++.............+......+||..|... .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998754210 0111111110000000111112346789888732 23332 5
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHh
Q 030856 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE 110 (170)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 110 (170)
.++...++.++|+|.++. +.+....|+..+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 566678899999999986 455556665555543
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.17 E-value=1.1e-05 Score=57.95 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=54.5
Q ss_pred hhcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHHhcCCeEEEeecCC
Q 030856 78 YIRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~ 155 (170)
...++|.+++|.+. +|.. ...+..++..... .++|.++|+||+|+.+.... ..+.........|.+++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 36789999988665 4543 3334444333222 36788999999998653220 01112222335678999999999
Q ss_pred CCChHHHHHHH
Q 030856 156 GFNIKGCSPTI 166 (170)
Q Consensus 156 ~~~v~~~~~~l 166 (170)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999987654
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.12 E-value=3.8e-06 Score=61.94 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=21.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+-.-|+|+|++++|||+|+|++++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34566889999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.97 E-value=4.5e-06 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988764
No 237
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.97 E-value=1.3e-05 Score=52.83 Aligned_cols=85 Identities=8% Similarity=0.073 Sum_probs=54.5
Q ss_pred EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCcccCHH
Q 030856 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvv~nK~D~~~~~~~~~~ 135 (170)
+.+.++|+|+.. .......+..+|.++++...+.. + ..+...+..+.... .++.++.+|.|+.|... .. ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HH
Confidence 578999999865 34455567789999999987643 3 55555555554432 24577899999999532 11 23
Q ss_pred HHHHHHHhcCCeEE
Q 030856 136 EGEAKSRELNVMFI 149 (170)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (170)
+..+..+.++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 34555555565444
No 238
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.87 E-value=0.00023 Score=47.23 Aligned_cols=85 Identities=7% Similarity=-0.031 Sum_probs=54.7
Q ss_pred EEEEEEecCCh-hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHH
Q 030856 58 VRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE 136 (170)
Q Consensus 58 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~ 136 (170)
+.+.++|+|+. .. ......+..+|.+|++...+ ..++..+...+..+.... +.++.+|+|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 56889999986 32 23445677899999998865 456666666666665532 4568889999985320 11344
Q ss_pred HHHHHHhcCCeEE
Q 030856 137 GEAKSRELNVMFI 149 (170)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (170)
..+..+..+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4455555665544
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.86 E-value=8.3e-06 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
-.++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 240
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.82 E-value=0.00027 Score=52.12 Aligned_cols=84 Identities=13% Similarity=0.024 Sum_probs=46.0
Q ss_pred EEEEEEEecCChhhhhh-hhh-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCC
Q 030856 57 TVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK 129 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~ 129 (170)
.+.+.|+||||...... ... ..+..++.+++|+|+.... ........+.. ..+ .-+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 35689999999654321 111 1244789999999987432 22222222222 233 3457799996422
Q ss_pred cccCHHHHHHHHHhcCCeEEEe
Q 030856 130 RQVSIEEGEAKSRELNVMFIET 151 (170)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
. ..+.......+.++..+
T Consensus 256 ~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C----THHHHHHHHHCCCEEEE
T ss_pred H----HHHHHHHHHHCCCeEEE
Confidence 1 23345555566655444
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.82 E-value=1.4e-05 Score=52.51 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=22.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+..+.--|+|+|++|+|||||++.|...
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3445567899999999999999999864
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.81 E-value=1.1e-05 Score=53.16 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.80 E-value=1.7e-05 Score=51.69 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+.-.++++|++|+|||||++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999875
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.74 E-value=1.6e-05 Score=52.40 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999998864
No 245
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.74 E-value=1.9e-05 Score=52.33 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+...|+++|+.|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998775
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.72 E-value=1.8e-05 Score=51.59 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
-++++|++|+|||||++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999854
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.72 E-value=1.8e-05 Score=50.91 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 030856 11 KLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~ 30 (170)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999654
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.70 E-value=2.5e-05 Score=51.79 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+...|+|+|++|+|||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998775
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.70 E-value=2.1e-05 Score=52.70 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
--++++|+.|+|||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999998754
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.70 E-value=2.1e-05 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-++++|+.|+|||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999988643
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.68 E-value=2.2e-05 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.647 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-.++|+|++|+|||||++.+.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999988743
No 252
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.68 E-value=3e-05 Score=50.09 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+...|+++|++|+||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999998874
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.67 E-value=3.6e-05 Score=50.00 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
...+..+|+++|++||||||+.+.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3445678999999999999999988754
No 254
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.65 E-value=3.2e-05 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
...|+++|++||||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999998764
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.65 E-value=3.2e-05 Score=49.47 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHH
Q 030856 10 YKLVFLGDQSVGKTSIITRF 29 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l 29 (170)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.64 E-value=3e-05 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.-|+++|++|+|||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999998754
No 257
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.63 E-value=3.5e-05 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|+++|++|+|||||++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998875
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.63 E-value=3.4e-05 Score=50.31 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
|+|+||+|+|||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 259
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.62 E-value=5.2e-05 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|+++|++|+||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.61 E-value=3.3e-05 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..|+++|++||||||+.+.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 261
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.61 E-value=6.4e-05 Score=49.47 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
..+...|+++|++||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999998874
No 262
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.61 E-value=0.0019 Score=45.22 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=54.7
Q ss_pred EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEE-EEEeCCCCCCCcccCH
Q 030856 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIV-LVGNKTDLVEKRQVSI 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~v-vv~nK~D~~~~~~~~~ 134 (170)
.+.+.|+|+|+..... .....+..+|.++++...+ ..++..+...+..+.... ..+.+++ +|.|+.+..
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 3578999998754322 1234567899999998754 556667666666665432 2456644 888999831
Q ss_pred HHHHHHHHhcCCeEEE
Q 030856 135 EEGEAKSRELNVMFIE 150 (170)
Q Consensus 135 ~~~~~~~~~~~~~~~~ 150 (170)
...+++.+..+.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 3456666677776654
No 263
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.60 E-value=4.5e-05 Score=51.65 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 479999999999999999886543
No 264
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.59 E-value=5.5e-05 Score=49.77 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
....+.|+++|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999998875
No 265
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.59 E-value=4.4e-05 Score=50.59 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+...|+++|.+||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999874
No 266
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=4e-05 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+..-|+++|++|||||||.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999998754
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.58 E-value=5.1e-05 Score=48.80 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 268
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.58 E-value=4.3e-05 Score=54.81 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998654
No 269
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.58 E-value=4.1e-05 Score=48.59 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999988754
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.57 E-value=3.9e-05 Score=51.54 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 271
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.56 E-value=4.7e-05 Score=50.61 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.56 E-value=5.1e-05 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 273
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.56 E-value=4.3e-05 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988763
No 274
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.56 E-value=4.4e-05 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.++++|++|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.56 E-value=5.4e-05 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~ 30 (170)
...|+++|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999988
No 276
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.55 E-value=5e-05 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.55 E-value=5.2e-05 Score=48.42 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.|+++|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.55 E-value=4.9e-05 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 279
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.53 E-value=5.2e-05 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999987543
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.53 E-value=5.3e-05 Score=52.14 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999887543
No 281
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.53 E-value=5.9e-05 Score=51.12 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988653
No 282
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.52 E-value=7.3e-05 Score=49.88 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 283
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.52 E-value=6.2e-05 Score=50.37 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 284
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.51 E-value=7.2e-05 Score=48.72 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|+++|.+||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998764
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.51 E-value=8.2e-05 Score=51.31 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 286
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.50 E-value=9.4e-05 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999988754
No 287
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.50 E-value=8.1e-05 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|+++|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.49 E-value=5.6e-05 Score=51.99 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
=.++++|+.|||||||++.+.+-
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999998863
No 289
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.49 E-value=6.1e-05 Score=49.61 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+|+++|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 290
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.49 E-value=8e-05 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 578999999999999999987643
No 291
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.49 E-value=7.9e-05 Score=52.32 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=22.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~~ 35 (170)
-.++++|++|+|||||+|.+.+...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 35789999999999999999976543
No 292
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.49 E-value=7.8e-05 Score=51.15 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 293
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.49 E-value=6.5e-05 Score=51.73 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 478999999999999999887543
No 294
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.49 E-value=9e-05 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|++.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 295
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.48 E-value=5.6e-05 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988754
No 296
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.48 E-value=7.5e-05 Score=49.01 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.48 E-value=6.5e-05 Score=52.76 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
=.++|+|++|+|||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4689999999999999998874
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.47 E-value=8.6e-05 Score=48.32 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999875
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.47 E-value=7.1e-05 Score=51.11 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988754
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.47 E-value=9e-05 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..|+++|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998864
No 301
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.47 E-value=9.5e-05 Score=50.42 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999887543
No 302
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.47 E-value=8.7e-05 Score=50.38 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 303
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.47 E-value=8.9e-05 Score=50.83 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999987543
No 304
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.46 E-value=7.3e-05 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999864
No 305
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.46 E-value=7.5e-05 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 306
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.46 E-value=8.1e-05 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57999999999999999998753
No 307
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.46 E-value=0.0001 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+.++|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999864
No 308
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.45 E-value=8.6e-05 Score=49.24 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
++|+++|+|||||+|...+|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988743
No 309
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.45 E-value=2.1e-05 Score=55.28 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-.++++|++|+|||||+|.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998754
No 310
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.001 Score=44.55 Aligned_cols=152 Identities=10% Similarity=0.050 Sum_probs=74.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEE-ec-CChhh----hhh-hhhhh
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW-DT-AGQER----FRS-LIPSY 78 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-D~-~g~~~----~~~-~~~~~ 78 (170)
+.+++-|++.|+++.||++|++++++..... .. ......+........+-|| |. +.... |.+ ..+..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~~~~--~~----i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EV 99 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCSSTG--IS----IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPL 99 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCCCCS--SC----EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHH
T ss_pred CCCceEEEecCcccccHHHHHHHHhcccccc--cc----cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHH
Confidence 5567777777999999999999999874211 11 1222333444555556554 33 32211 111 11111
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC----
Q 030856 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK---- 154 (170)
Q Consensus 79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~---- 154 (170)
.....++|+|++...++..+.+... ......+..+++|+.-.+......-..++....+..+|+.++.....
T Consensus 100 R~viggII~~f~~p~~~~~~~i~~~----~~~~~~dg~~v~Vg~~~~~~~~~~de~~e~~~~~~~~GfE~V~~~~~~~~~ 175 (233)
T 3uc9_A 100 RNVMAGIILITDIRQTKPQELLHQF----MIAAHRNTFVVLVNVNEEVEQDEIDELNEIWSNAFTNVIEFVNWKRSKPTV 175 (233)
T ss_dssp HHTEEEEEEEECHHHHCGGGTHHHH----HHHSCTTCEEEEEECCTTCCHHHHHHHHHHHTTSSSSCEEEEECC----CC
T ss_pred HHhcceEEEEEeCCCcchHHHHHHH----hccCCCCceEEEEecCCccCCCchhhHHHHHHHHHhcCeEEEEecCCCccc
Confidence 2234789999986554444443332 22233344555554333211100001122222234467788865321
Q ss_pred ------CCCChHHHHHHHH
Q 030856 155 ------AGFNIKGCSPTIR 167 (170)
Q Consensus 155 ------~~~~v~~~~~~l~ 167 (170)
+..|++.+.+.|-
T Consensus 176 ~~ne~gE~~Gi~RI~E~Le 194 (233)
T 3uc9_A 176 NHNDYGEKLGLDRIQEIID 194 (233)
T ss_dssp CBCTTSCBCHHHHHHHHHH
T ss_pred ccccccchhCHHHHHHHHH
Confidence 2335677766653
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=8.8e-05 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998874
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.45 E-value=9.4e-05 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999976
No 313
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.45 E-value=8.5e-05 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...|+++|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 314
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.44 E-value=7.4e-05 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..|+++|++||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.44 E-value=9.1e-05 Score=48.14 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 316
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.44 E-value=0.00011 Score=51.91 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
..+..-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567899999999999999998775
No 317
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.44 E-value=8.1e-05 Score=51.36 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 318
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.44 E-value=0.00012 Score=47.62 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...|+++|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 319
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.43 E-value=5.4e-05 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998875
No 320
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.43 E-value=8.4e-05 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987643
No 321
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.43 E-value=8.6e-05 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 322
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.42 E-value=0.00012 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999887543
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.42 E-value=0.00013 Score=48.17 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+...|+++|++|+||||+.+.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998864
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.42 E-value=0.00012 Score=51.09 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
......|+++|++||||||+.+++..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999874
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.42 E-value=0.00011 Score=50.87 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++|+|+.|+|||||++.+.+-..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999887543
No 326
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.42 E-value=8.8e-05 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988754
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.41 E-value=0.00012 Score=48.19 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+...|+++|++|+||||+.+.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988753
No 328
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.41 E-value=0.00012 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
...|+++|++||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999988653
No 329
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.41 E-value=0.00014 Score=50.75 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=21.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
..+...|+|+|++|||||||.+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999987653
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.41 E-value=0.00015 Score=46.97 Aligned_cols=26 Identities=27% Similarity=0.178 Sum_probs=22.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+...|+++|.+|+||||+.+.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988753
No 331
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.40 E-value=5.1e-05 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=15.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHh-cC
Q 030856 10 YKLVFLGDQSVGKTSIITRFM-YD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~-~~ 32 (170)
--++++|++|+|||||++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999998 54
No 332
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.40 E-value=0.00013 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-.++++|++|+|||||+|.+. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 467999999999999999998 543
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.40 E-value=0.00013 Score=51.60 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
..+++-|+|+|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988753
No 334
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.40 E-value=0.00012 Score=48.89 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+.|+++|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 335
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.39 E-value=0.0001 Score=49.99 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 030856 11 KLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~ 30 (170)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999877
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.38 E-value=0.00012 Score=46.62 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998875
No 337
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.38 E-value=0.00014 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998765
No 338
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.38 E-value=0.00014 Score=48.11 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.38 E-value=0.00013 Score=49.89 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=21.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 5 SALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 5 ~~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...+.+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999988765
No 340
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.37 E-value=0.00013 Score=49.52 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|+|+|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998876
No 341
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.37 E-value=0.00018 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=19.3
Q ss_pred Ccee-EEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYK-LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~-i~i~G~~~~GKStll~~l~~~ 32 (170)
++.+ |+++|+|||||+|....|...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3444 566899999999999988743
No 342
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.36 E-value=9.7e-05 Score=49.41 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 343
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.36 E-value=0.00013 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.36 E-value=0.00014 Score=47.44 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|+++|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 345
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.35 E-value=0.00064 Score=42.18 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999999987754
No 346
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.34 E-value=5e-05 Score=48.87 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998854
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.33 E-value=0.00016 Score=47.43 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+...|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999998865
No 348
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.33 E-value=0.00013 Score=46.83 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 349
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.32 E-value=0.00015 Score=48.57 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
+.|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 350
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.32 E-value=8.4e-05 Score=52.27 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
=.++|+|+.|+|||||++.+.+-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 368999999999999999888643
No 351
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.31 E-value=0.00012 Score=52.58 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|+.|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999998753
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=0.00019 Score=47.21 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+...|+++|++|+|||||++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999998864
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.31 E-value=8.8e-05 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=16.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 354
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.31 E-value=0.00011 Score=53.04 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.-+++|+|++|+|||||++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999988753
No 355
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.30 E-value=0.00014 Score=48.53 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 356
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.30 E-value=0.00013 Score=50.44 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999864
No 357
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.29 E-value=0.00015 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999988653
No 358
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.29 E-value=9.8e-05 Score=46.36 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-.++++|++|+|||+|++.+.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999988643
No 359
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.29 E-value=0.00019 Score=48.33 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...+|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998864
No 360
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.29 E-value=0.00022 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~ 30 (170)
.+.+.|+|+|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999886
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.28 E-value=0.00018 Score=46.14 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..++++|++|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999998853
No 362
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.28 E-value=0.00017 Score=51.73 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-++++|+.|+|||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 468999999999999999987544
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.28 E-value=0.00018 Score=46.82 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.27 E-value=0.00015 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.-.++++|+.||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999874
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.27 E-value=0.0002 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+...|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998876
No 366
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.26 E-value=0.00023 Score=47.41 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
++.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999875
No 367
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.26 E-value=0.00015 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-.++++|+.|+|||||++.+.+-..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999987643
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.26 E-value=0.00017 Score=48.03 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.+.|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 369
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.25 E-value=0.00016 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998865
No 370
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.25 E-value=0.00017 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998864
No 371
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.25 E-value=0.00022 Score=48.71 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~ 30 (170)
...|+|+|++||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 372
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.25 E-value=0.00017 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-++++|+.|+|||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 478999999999999999887543
No 373
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.25 E-value=0.00015 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-.++++|+.|+|||||++.+.+-..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4789999999999999999987543
No 374
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.25 E-value=0.00022 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-++++|+.|+|||||++.+.+-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 468999999999999999887543
No 375
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.24 E-value=0.00022 Score=51.25 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-++++|+.|+|||||++.+.+-..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 478999999999999999887543
No 376
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.24 E-value=0.00018 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-++++|+.|+|||||++.+.+-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 468999999999999999987543
No 377
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.24 E-value=0.0002 Score=46.76 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...|+++|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 378
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=0.0002 Score=46.12 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988754
No 379
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.24 E-value=0.00018 Score=52.07 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
=.++++|++|||||||++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998863
No 380
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.24 E-value=0.00021 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 381
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.23 E-value=0.00018 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.--++++|+.|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998875
No 382
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.00024 Score=51.08 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 468999999999999999987543
No 383
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.22 E-value=0.0002 Score=51.78 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-++++|+.|+|||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 468999999999999999987643
No 384
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.22 E-value=0.0002 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 468999999999999999887543
No 385
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.21 E-value=0.00023 Score=48.02 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+++.|+|.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.20 E-value=0.00029 Score=45.37 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998875
No 387
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.20 E-value=0.00021 Score=48.87 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 388
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.19 E-value=0.00028 Score=48.43 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999998875
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.18 E-value=0.00022 Score=46.10 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988864
No 390
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.17 E-value=0.00028 Score=47.44 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+..-|+|.|+.|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998865
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.17 E-value=8e-05 Score=49.34 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
-|+|+|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.17 E-value=0.00021 Score=52.41 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++|+|+.|||||||++.+.+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999988643
No 393
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.16 E-value=0.00021 Score=50.82 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998864
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.16 E-value=0.00027 Score=45.11 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 395
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.16 E-value=0.00022 Score=53.68 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-.++++|++|||||||++.+.+--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 459999999999999999998754
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.15 E-value=0.00025 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998864
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.14 E-value=0.00033 Score=44.61 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
-+|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998764
No 398
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.12 E-value=0.00028 Score=45.48 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999864
No 399
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.12 E-value=0.00026 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999998863
No 400
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.11 E-value=0.00022 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
-++++|+.|+|||||++.+.+-..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 478999999999999999987543
No 401
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.11 E-value=0.0013 Score=48.51 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=19.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~ 30 (170)
+-.-|+|+|+.++|||+|+|.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44566799999999999999654
No 402
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.07 E-value=0.00032 Score=46.85 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.07 E-value=0.00031 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.--++++|+.|+||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45689999999999999998875
No 404
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.07 E-value=0.0004 Score=43.53 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030856 12 LVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~ 30 (170)
.+|+|+.|+||||+++++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999976
No 405
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.07 E-value=0.00046 Score=45.21 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=22.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
-....|+++|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35688999999999999999988753
No 406
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.05 E-value=0.0003 Score=45.22 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988754
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.05 E-value=0.00049 Score=45.57 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+...|+++|.+|+||||+.+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998764
No 408
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.04 E-value=0.00061 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+..-|++.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998764
No 409
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.04 E-value=0.00047 Score=47.05 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+..++++|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998754
No 410
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.04 E-value=0.00039 Score=46.60 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988753
No 411
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.04 E-value=0.00041 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988754
No 412
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.04 E-value=0.00054 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998774
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.03 E-value=0.00036 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.--++|+|+.|+|||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45689999999999999998875
No 414
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.03 E-value=0.00055 Score=47.81 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+..+++.|+||+|||+|.+.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999998754
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.02 E-value=0.00038 Score=47.52 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.-.|+++|++|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 416
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.01 E-value=0.00022 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 417
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.00 E-value=0.00054 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988775
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.99 E-value=0.00041 Score=49.65 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
=+++++|+.|+|||||++.+.+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999998643
No 419
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00035 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
-.++|+|+.|+|||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999998864
No 420
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.98 E-value=0.0004 Score=48.48 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 421
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.97 E-value=0.00055 Score=46.04 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
-..++++++|+|||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998764
No 422
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.97 E-value=0.00031 Score=49.70 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
-++++|+.|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 45788999999999999999653
No 423
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.96 E-value=0.00059 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.94 E-value=0.00066 Score=45.79 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
..+...|+++|++|+||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998874
No 425
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.94 E-value=0.00051 Score=45.52 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999987
No 426
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.93 E-value=0.00053 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999874
No 427
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.93 E-value=0.00079 Score=51.05 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
=.++++|+.|+|||||++.+.+-..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3589999999999999999987543
No 428
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.92 E-value=0.00066 Score=42.20 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 44679999999999999999987653
No 429
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.91 E-value=0.00052 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999885
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.90 E-value=0.00077 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~ 35 (170)
-++++|+.|+|||||++.+.+-..+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4799999999999999999985443
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.86 E-value=0.00061 Score=50.83 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998875
No 432
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.85 E-value=0.00077 Score=51.60 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999988754
No 433
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.85 E-value=0.00085 Score=46.93 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=20.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.....+++.|++|+|||++.+.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999986654
No 434
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.85 E-value=0.00073 Score=46.74 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
....+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999998754
No 435
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0009 Score=51.44 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~ 35 (170)
.++++|+.|+|||||++.+.+-..+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 5799999999999999999875443
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.84 E-value=0.00064 Score=50.23 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
=+++|+|+.|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999998764
No 437
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.84 E-value=0.0011 Score=48.65 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
...-|+++|++||||||+.++|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3466888999999999999998753
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.84 E-value=0.00089 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+-..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999887543
No 439
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.84 E-value=0.00054 Score=45.24 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030856 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~ 31 (170)
-.+++.|+||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999887764
No 440
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.84 E-value=0.00083 Score=45.76 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
....+++.|++|+|||++++.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998753
No 441
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.84 E-value=0.0007 Score=48.84 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030856 12 LVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~ 30 (170)
.+|+|+.|+|||||++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999977
No 442
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.83 E-value=0.00072 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998864
No 443
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.82 E-value=0.0011 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998864
No 444
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.82 E-value=0.00095 Score=43.83 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 445
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.81 E-value=0.00078 Score=44.97 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
.+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 446
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.81 E-value=0.00081 Score=44.32 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 447
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.80 E-value=0.0012 Score=45.43 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45578999999999999999998764
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.79 E-value=0.0012 Score=44.34 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=22.1
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 3 PVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
|+...+..-|++.|.+|+||||+++.+..
T Consensus 15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 15 QTQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555677899999999999999998874
No 449
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.79 E-value=0.0011 Score=50.88 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++++|+.|+|||||++.+.+...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 579999999999999999987543
No 450
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.77 E-value=0.0012 Score=46.45 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+.-|+|+|++|||||+|...+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345788999999999999998743
No 451
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.77 E-value=0.00085 Score=44.55 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~ 31 (170)
++.|+++|++|+||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988765
No 452
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.76 E-value=0.00079 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998753
No 453
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.75 E-value=0.0009 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-.+++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999998864
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.74 E-value=0.0012 Score=50.09 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~ 35 (170)
.++++|+.|+|||||++.+.+-..+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999975443
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.73 E-value=0.001 Score=43.73 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
...|+|+|++|+|||+|...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998654
No 456
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.73 E-value=0.0014 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
.++|+|+.|+|||||++.+.+-..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998644
No 457
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.72 E-value=0.00073 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~ 33 (170)
=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999887654
No 458
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.72 E-value=0.0015 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988764
No 459
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.71 E-value=0.00081 Score=51.62 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999988754
No 460
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.70 E-value=0.0009 Score=46.31 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 461
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.70 E-value=0.0009 Score=46.85 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=47.1
Q ss_pred EEEEEEecCChhhhhhh-h---hhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856 58 VRLQLWDTAGQERFRSL-I---PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~ 131 (170)
+.+.+.||+|....... . ...+. ..+.+++++|.+.. ...+..+...+. .-+ ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence 46899999996643221 1 12222 36788899987642 233333322222 111 23455699996432
Q ss_pred cCHHHHHHHHHhcCCeEEEee
Q 030856 132 VSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S 152 (170)
...+...+...++++..++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2356667777888765554
No 462
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.70 E-value=0.0014 Score=50.33 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~~~ 35 (170)
.++++|+.|+|||||++.+.+-..+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4799999999999999999986443
No 463
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.70 E-value=0.00091 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~~~ 34 (170)
=.++++|+.|+|||||++.+.+-..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3689999999999999999886543
No 464
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.69 E-value=0.00086 Score=45.98 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+...|+|.|.+||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988754
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.68 E-value=0.0013 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
...|++.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999998754
No 466
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.66 E-value=0.00099 Score=44.78 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=18.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+..-|++.|++|+||||+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988743
No 467
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.66 E-value=0.0011 Score=46.62 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=47.6
Q ss_pred EEEEEEecCChhhhhhhh-------hhhh-----cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030856 58 VRLQLWDTAGQERFRSLI-------PSYI-----RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~-------~~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D 125 (170)
+.+.+.|+||........ ...+ ...+.+++|.|.+.. .+.+.. ...+.... ++ .-+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~i-~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--NV-TGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--CC-CEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--CC-CEEEEeCCC
Confidence 358899999953221111 1111 247889999998632 222221 12232221 22 345569999
Q ss_pred CCCCcccCHHHHHHHHHhcCCeEEEeec
Q 030856 126 LVEKRQVSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 153 (170)
... ....+...+...+.|+..++.
T Consensus 261 ~~~----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence 532 223467778888888877754
No 468
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.65 E-value=0.00099 Score=47.84 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-.+++.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998753
No 469
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.65 E-value=0.0011 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999887643
No 470
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.64 E-value=0.0012 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~~ 33 (170)
.++|.|++|+|||+|++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988643
No 471
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.63 E-value=0.0013 Score=43.31 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030856 12 LVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~ 30 (170)
.+|+|+.|+||||+++++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999875
No 472
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.63 E-value=0.0016 Score=45.87 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..-|+|+|++|||||+|...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 345889999999999999998754
No 473
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.001 Score=47.48 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988763
No 474
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.60 E-value=0.0014 Score=45.77 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 475
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.59 E-value=0.0018 Score=43.04 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
++..-|++.|++|+||||+++.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4557789999999999999998864
No 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0018 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC
Q 030856 12 LVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~~~~ 35 (170)
++++|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999876543
No 477
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.58 E-value=0.0015 Score=46.14 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
...+++.|++|+|||+|++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998754
No 478
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.57 E-value=0.0014 Score=44.16 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030856 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~ 31 (170)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999777653
No 479
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0016 Score=47.94 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+-.|++.||||+|||.|.+++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3567999999999999999998864
No 480
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.56 E-value=0.0021 Score=46.05 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
...+|+++|++|+||||+.+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999987653
No 481
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.55 E-value=0.00073 Score=47.17 Aligned_cols=24 Identities=13% Similarity=0.222 Sum_probs=17.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999988764
No 482
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.55 E-value=0.0015 Score=46.30 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-.+++.|++|+|||+|++++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998864
No 483
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0014 Score=46.64 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 484
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.52 E-value=0.0018 Score=43.81 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
.++..-|++.|.+|+||||+++.+..
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999998764
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.52 E-value=0.0017 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.-.+.+.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988753
No 486
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0018 Score=47.65 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
+--|++.||||+|||+|.+++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998853
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.51 E-value=0.0014 Score=47.01 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
--+.|+|++|+|||||+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998864
No 488
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.49 E-value=0.0016 Score=46.83 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998753
No 489
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.48 E-value=0.00018 Score=48.43 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030856 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~i~G~~~~GKStll~~l~~~ 32 (170)
++|+|+.|+|||||++.+.+-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999998864
No 490
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.002 Score=47.48 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+-.|++.||||+|||+|.+++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999998854
No 491
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.46 E-value=0.0021 Score=45.58 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
...+++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999998654
No 492
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.43 E-value=0.002 Score=45.98 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=17.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 030856 9 KYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 9 ~~~i~i~G~~~~GKStll~~l~ 30 (170)
.++ +|+|+.|+|||||++++.
T Consensus 24 ~~~-~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GIN-LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEE-EEECCTTSSHHHHHHHHH
T ss_pred CeE-EEECCCCCCHHHHHHHHH
Confidence 344 799999999999999874
No 493
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.42 E-value=0.0038 Score=41.09 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=25.4
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~ 31 (170)
|.+.-..+..-|+|.|.+||||+++.+.+..
T Consensus 3 ~~~~~~~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCTTBCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccCCCEEEEEECCCCCChHHHHHHHHH
Confidence 5565556778999999999999999887765
No 494
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.42 E-value=0.00075 Score=46.29 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..+++.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34889999999999999998753
No 495
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.41 E-value=0.0019 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 496
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.41 E-value=0.0017 Score=48.37 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
..-+++++|+||+|||++++.+...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999987754
No 497
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.40 E-value=0.0028 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~i~G~~~~GKStll~~l~~~ 32 (170)
....+++.|++|+|||++.+.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998754
No 498
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.0019 Score=45.93 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.39 E-value=0.0019 Score=47.81 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030856 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~i~G~~~~GKStll~~l~~~ 32 (170)
-.+++.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 500
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.39 E-value=0.0019 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030856 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~i~G~~~~GKStll~~l~~~ 32 (170)
.++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998864
Done!