BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030857
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/150 (67%), Positives = 119/150 (79%), Gaps = 1/150 (0%)
Query: 17 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFG 76
TM RIKDPK SLDFY+RVLG++LL++LDFP MKFSLYFL YED P D ++T WTF
Sbjct: 35 TMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFS 94
Query: 77 KPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 136
+ AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RFE LGV+F KKP
Sbjct: 95 RKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 153
Query: 137 DGGKLKGVAFIKDPDDYWIEIFDLKTIGKI 166
D GK+KG+AFI+DPD YWIEI + I I
Sbjct: 154 DDGKMKGLAFIQDPDGYWIEILNPNKIATI 183
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 113/143 (79%), Gaps = 1/143 (0%)
Query: 17 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFG 76
TM R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P + ++ W
Sbjct: 34 TMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALS 93
Query: 77 KPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 136
+ AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RFE LGV+F KKP
Sbjct: 94 RKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 152
Query: 137 DGGKLKGVAFIKDPDDYWIEIFD 159
D GK+KG+AFI+DPD YWIEI +
Sbjct: 153 DDGKMKGLAFIQDPDGYWIEILN 175
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 113/143 (79%), Gaps = 1/143 (0%)
Query: 17 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFG 76
TM R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P + ++ W
Sbjct: 38 TMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALS 97
Query: 77 KPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 136
+ AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RFE LGV+F KKP
Sbjct: 98 RKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 156
Query: 137 DGGKLKGVAFIKDPDDYWIEIFD 159
D GK+KG+AFI+DPD YWIEI +
Sbjct: 157 DDGKMKGLAFIQDPDGYWIEILN 179
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 113/143 (79%), Gaps = 1/143 (0%)
Query: 17 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFG 76
TM R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P + ++ W
Sbjct: 34 TMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALS 93
Query: 77 KPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 136
+ AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RFE LGV+F KKP
Sbjct: 94 RKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 152
Query: 137 DGGKLKGVAFIKDPDDYWIEIFD 159
D GK+KG+AFI+DPD YWI+I +
Sbjct: 153 DDGKMKGLAFIQDPDGYWIQILN 175
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 28/156 (17%)
Query: 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRT 71
R H TM R+ D + S+DFY++VLGM LL+ + PE K+SL F+GY P
Sbjct: 2 RLLH-TMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGY-----GPET----- 50
Query: 72 VWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVE 131
+ A IELT+NWG + Y G + +GHI ++VD+ +ACE+ + G
Sbjct: 51 -----EEAVIELTYNWGVDK------YELGTA----YGHIALSVDNAAEACEKIRQNGGN 95
Query: 132 FAKK--PDGGKLKGVAFIKDPDDYWIEIFDLKTIGK 165
++ P G +AF++DPD Y IE+ + K G+
Sbjct: 96 VTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGR 131
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 29/154 (18%)
Query: 10 NKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVD 69
++R H TM R+ D S+ FY+ LGM +L++ D PE K++L FLGY S+
Sbjct: 6 SRRMLH-TMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSS------ 58
Query: 70 RTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLG 129
+ELT+N+G S +GHI I V+DV + +
Sbjct: 59 ---------TVLELTYNYGVTS----------YKHDEAYGHIAIGVEDVKELVADMRKHD 99
Query: 130 VEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 163
V + + G + AF+ DPD Y+IE+ + KT+
Sbjct: 100 VPIDYEDESGFM---AFVVDPDGYYIELLNEKTM 130
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLL------KRLDFPEMKFSLYFLG--YEDTAS 62
+R H M +K K + FYS++LGM ++ K L F + KF+L+ +G +E A+
Sbjct: 26 RRLDHIVM-TVKSIKDTTMFYSKILGMEVMTFKEDRKALCFGDQKFNLHEVGKEFEPKAA 84
Query: 63 APA 65
P
Sbjct: 85 HPV 87
>pdb|4EGV|A Chain A, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|B Chain B, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|C Chain C, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|D Chain D, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|E Chain E, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|F Chain F, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
Length = 520
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 72 VWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGI 113
V FG T L H E+ PD +G E RG+G+ GI
Sbjct: 137 VLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGI 178
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 114 TVDDVYKACERFERLGVEFAKKPDGGKLK 142
TVDD+ +A ++ LG ++ GGKLK
Sbjct: 156 TVDDMIEAAKKIHALGAQYVVITGGGKLK 184
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPAD-PVD 69
+R HF +F++ + + FY VLGM +L+ +F E G + + P D
Sbjct: 26 RRALHF-VFKVGNRFQTARFYRDVLGMKVLRHEEFEE--------GCKAACNGPYDGKWS 76
Query: 70 RTVWTFGKPA---TIELTHNWGT 89
+T+ FG ELT+N+G
Sbjct: 77 KTMVGFGPEDDHFVAELTYNYGV 99
>pdb|2WL9|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 103 SEPRGFGHIGITVDDVYKACERFERLGVEFA 133
+E +G GHI I DDV +A + LG+E A
Sbjct: 142 TEGQGLGHIIIREDDVEEATRFYRLLGLEGA 172
>pdb|2WL3|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 103 SEPRGFGHIGITVDDVYKACERFERLGVEFA 133
+E +G GHI I DDV +A + LG+E A
Sbjct: 142 TEGQGLGHIIIREDDVEEATRFYRLLGLEGA 172
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 115 VDDVYKA--CERFERLGVEFAKKPDGGKL-KGVAFIKD 149
+++VY +ER+G+E AKK G + KGV+FI+
Sbjct: 319 IEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 356
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 14 PHFTMFRIKDPKVSLDFYSRVLGM 37
P T+F+I D V L +Y+ +LGM
Sbjct: 113 PTQTLFKIHDKDVPLSYYTGILGM 136
>pdb|1RDX|A Chain A, R-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDX|B Chain B, R-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDY|A Chain A, T-state Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-bisphosphatase Expressed In E. Coli
pdb|1RDY|B Chain B, T-state Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-bisphosphatase Expressed In E. Coli
pdb|1RDZ|A Chain A, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDZ|B Chain B, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
Length = 337
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 68 VDRTVWTFGKPATIELTHNWGTESDPDFKGYHN------GNSEPRGFGHIGITVDDVYK 120
VDR V K + + + E DP Y NS P G ++G V DV++
Sbjct: 196 VDRNVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGAAYVGSMVADVHR 254
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 115 VDDVYKA--CERFERLGVEFAKKPDGGKL-KGVAFIKD 149
+++VY +ER+G+E AKK G + KGV+FI+
Sbjct: 283 IEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 320
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 102 NSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYW 154
N E + GI V +VY+ + E+ + KP G K KG KDP+D+W
Sbjct: 102 NLERKWLKKAGIRVPEVYEDPDDIEKPVI---VKPHGAKGGKGYFLAKDPEDFW 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,153,591
Number of Sequences: 62578
Number of extensions: 284011
Number of successful extensions: 588
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 29
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)