Query 030857
Match_columns 170
No_of_seqs 121 out of 1361
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 100.0 5E-31 1.1E-35 193.5 20.4 166 4-169 66-231 (233)
2 PLN03042 Lactoylglutathione ly 100.0 4.5E-28 9.7E-33 174.2 20.3 165 4-168 18-182 (185)
3 KOG2944 Glyoxalase [Carbohydra 99.9 1.9E-26 4E-31 156.6 11.2 157 4-161 13-169 (170)
4 TIGR00068 glyox_I lactoylgluta 99.9 5.7E-22 1.2E-26 138.6 17.8 139 3-166 7-147 (150)
5 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 1.1E-21 2.3E-26 135.7 16.0 128 12-160 2-141 (142)
6 cd07233 Glyoxalase_I Glyoxalas 99.9 6.7E-21 1.4E-25 127.8 16.5 121 14-158 1-121 (121)
7 cd08358 Glo_EDI_BRP_like_21 Th 99.9 6.3E-21 1.4E-25 129.3 16.1 116 12-160 1-127 (127)
8 PRK10291 glyoxalase I; Provisi 99.9 9.1E-21 2E-25 129.1 15.7 124 18-166 1-126 (129)
9 PRK11478 putative lyase; Provi 99.9 1.1E-20 2.3E-25 128.4 15.3 123 12-160 5-129 (129)
10 TIGR03645 glyox_marine lactoyl 99.9 1.3E-20 2.7E-25 133.5 15.9 128 12-162 3-153 (162)
11 cd07241 Glo_EDI_BRP_like_3 Thi 99.9 1.1E-20 2.4E-25 127.2 14.7 121 13-158 1-125 (125)
12 cd08342 HPPD_N_like N-terminal 99.9 2.5E-20 5.4E-25 128.2 14.0 124 14-162 1-125 (136)
13 cd08352 Glo_EDI_BRP_like_1 Thi 99.9 7E-20 1.5E-24 123.1 15.9 122 12-159 2-125 (125)
14 TIGR03081 metmalonyl_epim meth 99.8 4.7E-20 1E-24 124.8 11.8 124 13-159 1-128 (128)
15 cd07243 2_3_CTD_C C-terminal d 99.8 6.5E-19 1.4E-23 122.3 16.5 116 12-161 5-126 (143)
16 PLN02300 lactoylglutathione ly 99.8 8.6E-19 1.9E-23 134.7 17.7 127 11-162 22-150 (286)
17 cd07257 THT_oxygenase_C The C- 99.8 3.2E-19 7E-24 125.1 12.0 121 13-162 1-127 (153)
18 cd07263 Glo_EDI_BRP_like_16 Th 99.8 3E-18 6.5E-23 114.1 14.9 119 16-159 1-119 (119)
19 cd07247 SgaA_N_like N-terminal 99.8 4.3E-18 9.4E-23 113.1 14.8 113 14-159 1-114 (114)
20 cd08351 ChaP_like ChaP, an enz 99.8 2.8E-18 6.1E-23 115.9 14.1 110 11-160 2-121 (123)
21 cd09011 Glo_EDI_BRP_like_23 Th 99.8 2.6E-18 5.7E-23 115.4 13.8 115 13-160 2-119 (120)
22 cd07237 BphC1-RGP6_C_like C-te 99.8 3.5E-18 7.6E-23 120.0 14.9 120 9-161 5-132 (154)
23 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 2.4E-18 5.3E-23 113.3 12.7 114 14-157 1-114 (114)
24 cd08346 PcpA_N_like N-terminal 99.8 4.2E-18 9.2E-23 114.6 13.9 122 13-158 1-126 (126)
25 PRK04101 fosfomycin resistance 99.8 6.4E-18 1.4E-22 116.6 15.0 115 12-161 3-120 (139)
26 cd07265 2_3_CTD_N N-terminal d 99.8 6.5E-18 1.4E-22 113.8 14.6 113 12-161 3-120 (122)
27 cd07256 HPCD_C_class_II C-term 99.8 7.8E-18 1.7E-22 119.1 15.3 116 12-161 2-124 (161)
28 cd08364 FosX FosX, a fosfomyci 99.8 6.2E-18 1.3E-22 115.6 14.2 118 12-162 3-124 (131)
29 cd08347 PcpA_C_like C-terminal 99.8 8.6E-18 1.9E-22 118.4 15.2 119 13-162 1-122 (157)
30 cd08355 Glo_EDI_BRP_like_14 Th 99.8 3.2E-17 6.9E-22 110.3 17.1 119 16-159 2-121 (122)
31 cd07264 Glo_EDI_BRP_like_15 Th 99.8 2.2E-17 4.8E-22 111.3 15.5 122 14-160 1-125 (125)
32 cd07255 Glo_EDI_BRP_like_12 Th 99.8 2.2E-17 4.9E-22 111.3 15.3 118 12-162 1-121 (125)
33 cd08360 MhqB_like_C C-terminal 99.8 2.5E-17 5.4E-22 113.0 15.5 115 13-162 3-122 (134)
34 cd08363 FosB FosB, a fosfomyci 99.8 4.5E-18 9.9E-23 116.3 11.7 116 14-164 1-119 (131)
35 cd07249 MMCE Methylmalonyl-CoA 99.8 6.3E-18 1.4E-22 114.2 12.3 123 14-159 1-128 (128)
36 PRK06724 hypothetical protein; 99.8 1.7E-17 3.6E-22 113.1 14.3 111 10-161 4-124 (128)
37 cd08343 ED_TypeI_classII_C C-t 99.8 2.7E-17 5.9E-22 112.3 15.4 114 15-162 1-119 (131)
38 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 2.5E-17 5.5E-22 110.6 14.8 118 12-159 2-124 (125)
39 cd09013 BphC-JF8_N_like N-term 99.8 1.5E-17 3.4E-22 111.8 13.7 111 12-160 5-118 (121)
40 cd09014 BphC-JF8_C_like C-term 99.8 3.2E-17 6.9E-22 116.5 15.5 118 12-160 5-127 (166)
41 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 4.6E-17 1E-21 110.3 15.5 118 13-160 1-128 (128)
42 cd08359 Glo_EDI_BRP_like_22 Th 99.8 3.6E-17 7.8E-22 109.5 14.6 116 15-159 3-119 (119)
43 cd07252 BphC1-RGP6_N_like N-te 99.8 3.4E-17 7.3E-22 110.2 14.0 110 13-161 2-118 (120)
44 cd07238 Glo_EDI_BRP_like_5 Thi 99.8 6.4E-17 1.4E-21 107.3 14.7 108 16-160 3-111 (112)
45 cd07239 BphC5-RK37_C_like C-te 99.8 5.5E-17 1.2E-21 112.7 14.7 111 12-161 3-118 (144)
46 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 1.5E-16 3.2E-21 106.6 16.2 116 17-159 5-121 (122)
47 cd08348 BphC2-C3-RGP6_C_like T 99.8 9.9E-17 2.1E-21 109.6 15.6 119 13-162 1-122 (134)
48 PF00903 Glyoxalase: Glyoxalas 99.8 3.4E-18 7.5E-23 115.1 8.1 121 13-157 1-128 (128)
49 cd08354 Glo_EDI_BRP_like_13 Th 99.8 9.3E-17 2E-21 107.7 14.9 120 14-160 1-122 (122)
50 cd07240 ED_TypeI_classII_N N-t 99.8 5.9E-17 1.3E-21 107.9 13.8 110 12-160 1-114 (117)
51 cd09012 Glo_EDI_BRP_like_24 Th 99.8 3.5E-17 7.6E-22 110.6 12.3 120 14-159 1-123 (124)
52 cd08361 PpCmtC_N N-terminal do 99.8 7.4E-17 1.6E-21 109.2 13.9 109 12-161 5-120 (124)
53 cd07244 FosA FosA, a Fosfomyci 99.7 3.4E-17 7.4E-22 110.3 12.1 114 13-166 1-116 (121)
54 cd07267 THT_Oxygenase_N N-term 99.7 1.4E-16 3E-21 106.1 14.1 109 12-160 2-110 (113)
55 PLN02300 lactoylglutathione ly 99.7 2.2E-16 4.7E-21 121.4 16.3 128 12-164 153-282 (286)
56 TIGR03211 catechol_2_3 catecho 99.7 2E-16 4.4E-21 122.3 15.9 116 11-159 143-264 (303)
57 cd08362 BphC5-RrK37_N_like N-t 99.7 2E-16 4.3E-21 105.9 13.5 110 13-161 3-118 (120)
58 cd08345 Fosfomycin_RP Fosfomyc 99.7 1.1E-16 2.4E-21 106.1 12.0 107 16-159 1-110 (113)
59 PF12681 Glyoxalase_2: Glyoxal 99.7 1E-16 2.2E-21 105.3 11.6 107 19-158 1-108 (108)
60 cd07235 MRD Mitomycin C resist 99.7 1.8E-16 4E-21 106.5 12.7 116 14-158 1-121 (122)
61 cd08349 BLMA_like Bleomycin bi 99.7 6.1E-16 1.3E-20 102.1 14.5 108 18-159 3-112 (112)
62 cd07266 HPCD_N_class_II N-term 99.7 2.6E-16 5.5E-21 105.7 12.8 111 12-160 3-118 (121)
63 cd07261 Glo_EDI_BRP_like_11 Th 99.7 3.5E-16 7.6E-21 104.0 13.3 109 17-158 2-113 (114)
64 cd07262 Glo_EDI_BRP_like_19 Th 99.7 6.9E-16 1.5E-20 103.9 14.0 112 14-158 1-122 (123)
65 cd07258 PpCmtC_C C-terminal do 99.7 5.8E-16 1.3E-20 107.2 13.7 111 15-162 1-116 (141)
66 cd08350 BLMT_like BLMT, a bleo 99.7 6.7E-16 1.5E-20 103.7 13.6 107 16-160 5-119 (120)
67 cd08344 MhqB_like_N N-terminal 99.7 6E-16 1.3E-20 102.8 13.1 106 13-160 2-109 (112)
68 TIGR02295 HpaD 3,4-dihydroxyph 99.7 9.2E-16 2E-20 118.1 15.8 119 9-161 132-257 (294)
69 cd08357 Glo_EDI_BRP_like_18 Th 99.7 6.7E-16 1.5E-20 103.9 13.3 116 16-159 2-124 (125)
70 cd07254 Glo_EDI_BRP_like_20 Th 99.7 1.8E-15 3.9E-20 101.5 14.5 109 15-160 3-117 (120)
71 cd06587 Glo_EDI_BRP_like This 99.7 1.3E-15 2.7E-20 99.3 13.1 111 16-157 1-112 (112)
72 cd08356 Glo_EDI_BRP_like_17 Th 99.7 3E-15 6.6E-20 99.7 11.9 103 17-159 5-113 (113)
73 TIGR03213 23dbph12diox 2,3-dih 99.7 5.4E-15 1.2E-19 113.5 14.7 115 11-159 140-262 (286)
74 cd07251 Glo_EDI_BRP_like_10 Th 99.6 7.7E-15 1.7E-19 98.1 13.1 115 17-159 2-120 (121)
75 TIGR03211 catechol_2_3 catecho 99.6 6.5E-15 1.4E-19 113.9 14.4 113 12-162 3-120 (303)
76 PF13669 Glyoxalase_4: Glyoxal 99.6 1.7E-15 3.8E-20 100.3 9.2 97 15-136 1-97 (109)
77 TIGR02295 HpaD 3,4-dihydroxyph 99.6 1.4E-14 2.9E-19 111.6 14.4 111 12-161 3-116 (294)
78 COG3324 Predicted enzyme relat 99.6 8.3E-14 1.8E-18 93.4 13.8 120 10-161 6-126 (127)
79 TIGR03213 23dbph12diox 2,3-dih 99.6 3.2E-14 6.9E-19 109.3 13.6 110 12-160 2-118 (286)
80 cd07250 HPPD_C_like C-terminal 99.5 1.5E-13 3.2E-18 99.8 11.6 106 13-136 3-112 (191)
81 KOG2943 Predicted glyoxalase [ 99.5 1.1E-13 2.3E-18 100.6 10.4 121 10-162 14-145 (299)
82 COG2514 Predicted ring-cleavag 99.5 1.2E-12 2.5E-17 97.3 13.7 121 7-161 4-127 (265)
83 TIGR01263 4HPPD 4-hydroxypheny 99.3 3.4E-11 7.4E-16 95.2 13.1 107 12-136 157-267 (353)
84 COG0346 GloA Lactoylglutathion 99.3 1.9E-11 4E-16 81.8 9.1 130 13-159 2-138 (138)
85 COG3565 Predicted dioxygenase 99.3 1.2E-10 2.6E-15 75.6 11.0 125 13-164 4-133 (138)
86 COG2764 PhnB Uncharacterized p 99.3 9.9E-10 2.1E-14 74.9 14.9 117 17-161 4-132 (136)
87 TIGR01263 4HPPD 4-hydroxypheny 99.2 3.4E-10 7.4E-15 89.6 14.3 124 13-160 2-127 (353)
88 cd06588 PhnB_like Escherichia 99.2 1E-09 2.2E-14 74.5 14.7 110 17-157 3-127 (128)
89 COG3607 Predicted lactoylgluta 99.2 1E-10 2.2E-15 77.1 9.0 123 13-161 3-128 (133)
90 PLN02875 4-hydroxyphenylpyruva 99.2 1.2E-10 2.6E-15 92.5 11.1 132 12-161 179-341 (398)
91 KOG2943 Predicted glyoxalase [ 99.2 1.2E-10 2.6E-15 84.9 9.1 121 13-166 149-276 (299)
92 PRK01037 trmD tRNA (guanine-N( 98.9 2.3E-08 5E-13 77.5 11.0 104 13-159 247-353 (357)
93 PF13468 Glyoxalase_3: Glyoxal 98.6 2.4E-07 5.3E-12 66.2 8.7 99 14-131 1-101 (175)
94 COG3185 4-hydroxyphenylpyruvat 98.6 1.3E-07 2.9E-12 72.9 6.3 107 12-136 166-274 (363)
95 PRK10148 hypothetical protein; 98.5 2.9E-05 6.4E-10 54.0 15.4 51 109-160 87-141 (147)
96 PF14506 CppA_N: CppA N-termin 98.5 1.5E-05 3.3E-10 52.6 12.5 119 14-165 1-119 (125)
97 COG2514 Predicted ring-cleavag 98.3 6.8E-06 1.5E-10 61.6 9.9 33 10-42 165-197 (265)
98 KOG0638 4-hydroxyphenylpyruvat 98.3 3.5E-06 7.7E-11 64.3 8.1 104 10-137 14-121 (381)
99 PLN02875 4-hydroxyphenylpyruva 98.2 3.5E-05 7.5E-10 61.7 12.5 129 14-161 1-152 (398)
100 PF14696 Glyoxalase_5: Hydroxy 98.1 1.4E-05 3E-10 54.9 6.5 120 12-162 8-128 (139)
101 PF06983 3-dmu-9_3-mt: 3-demet 97.2 0.027 5.8E-07 37.5 12.5 96 22-158 11-116 (116)
102 KOG0638 4-hydroxyphenylpyruvat 97.2 0.0003 6.5E-09 54.0 3.3 131 12-161 177-338 (381)
103 PF15067 FAM124: FAM124 family 96.7 0.032 6.9E-07 41.3 9.8 106 13-157 128-235 (236)
104 COG3185 4-hydroxyphenylpyruvat 96.5 0.099 2.1E-06 41.1 11.7 112 11-151 20-141 (363)
105 PF13669 Glyoxalase_4: Glyoxal 96.5 0.0078 1.7E-07 39.3 5.0 54 109-162 1-57 (109)
106 PF14507 CppA_C: CppA C-termin 96.2 0.024 5.3E-07 36.6 5.9 24 12-36 4-27 (101)
107 cd08353 Glo_EDI_BRP_like_7 Thi 95.0 0.2 4.3E-06 33.9 7.5 48 11-59 85-132 (142)
108 KOG2944 Glyoxalase [Carbohydra 94.5 0.25 5.5E-06 34.5 6.7 47 10-59 112-159 (170)
109 cd08352 Glo_EDI_BRP_like_1 Thi 93.6 0.78 1.7E-05 29.7 7.8 55 107-161 3-59 (125)
110 TIGR03645 glyox_marine lactoyl 93.4 0.64 1.4E-05 32.6 7.5 56 106-161 3-78 (162)
111 cd08346 PcpA_N_like N-terminal 92.9 0.87 1.9E-05 29.5 7.2 56 107-162 1-62 (126)
112 PLN02367 lactoylglutathione ly 92.5 0.91 2E-05 34.0 7.4 55 12-86 168-222 (233)
113 cd07242 Glo_EDI_BRP_like_6 Thi 92.0 1.2 2.5E-05 29.3 7.0 52 107-162 1-56 (128)
114 cd08342 HPPD_N_like N-terminal 91.4 1.7 3.6E-05 29.3 7.3 55 13-86 69-123 (136)
115 cd07249 MMCE Methylmalonyl-CoA 91.2 1.2 2.6E-05 29.0 6.4 52 109-161 2-56 (128)
116 PRK11478 putative lyase; Provi 91.2 2.6 5.7E-05 27.6 8.0 29 12-41 74-102 (129)
117 cd07245 Glo_EDI_BRP_like_9 Thi 91.0 1.2 2.7E-05 27.9 6.1 53 108-162 1-54 (114)
118 PF13670 PepSY_2: Peptidase pr 90.6 0.88 1.9E-05 28.1 4.9 45 117-161 30-74 (83)
119 PF06185 YecM: YecM protein; 90.6 3.6 7.8E-05 29.7 8.4 32 11-42 32-63 (185)
120 PF13468 Glyoxalase_3: Glyoxal 90.0 0.45 9.7E-06 33.8 3.6 52 108-162 1-56 (175)
121 cd06587 Glo_EDI_BRP_like This 89.9 2.1 4.6E-05 26.5 6.5 52 110-163 1-53 (112)
122 cd08347 PcpA_C_like C-terminal 89.8 2.4 5.3E-05 29.5 7.1 51 107-161 1-54 (157)
123 PRK10291 glyoxalase I; Provisi 89.7 3.5 7.5E-05 27.2 7.6 56 13-87 65-121 (129)
124 cd07263 Glo_EDI_BRP_like_16 Th 89.6 2.6 5.5E-05 26.8 6.8 52 110-161 1-55 (119)
125 PLN03042 Lactoylglutathione ly 89.4 2.6 5.7E-05 30.4 7.2 54 13-86 121-174 (185)
126 cd07241 Glo_EDI_BRP_like_3 Thi 89.2 3.4 7.3E-05 26.7 7.2 52 108-161 2-57 (125)
127 cd07233 Glyoxalase_I Glyoxalas 88.7 3.5 7.7E-05 26.5 7.0 53 108-160 1-58 (121)
128 cd07237 BphC1-RGP6_C_like C-te 88.0 4 8.7E-05 28.2 7.2 55 106-160 8-68 (154)
129 PF12681 Glyoxalase_2: Glyoxal 87.8 5 0.00011 25.2 7.5 31 12-43 55-85 (108)
130 cd07235 MRD Mitomycin C resist 87.7 4.2 9E-05 26.3 6.9 48 109-159 2-49 (122)
131 TIGR03081 metmalonyl_epim meth 87.1 3 6.5E-05 27.1 6.0 53 108-160 2-55 (128)
132 cd07250 HPPD_C_like C-terminal 85.7 4.5 9.7E-05 29.2 6.6 56 107-162 3-65 (191)
133 PF00903 Glyoxalase: Glyoxalas 85.4 4.3 9.4E-05 26.1 6.0 53 107-160 1-57 (128)
134 cd07268 Glo_EDI_BRP_like_4 Thi 85.3 10 0.00022 26.3 9.2 43 14-57 2-44 (149)
135 cd07255 Glo_EDI_BRP_like_12 Th 85.0 7.4 0.00016 25.1 7.1 50 107-161 2-53 (125)
136 cd08348 BphC2-C3-RGP6_C_like T 84.9 8.4 0.00018 25.4 7.3 51 108-161 2-55 (134)
137 cd07253 Glo_EDI_BRP_like_2 Thi 83.5 8.9 0.00019 24.5 6.9 30 107-136 3-33 (125)
138 cd08360 MhqB_like_C C-terminal 83.4 6.4 0.00014 26.2 6.3 30 12-41 61-92 (134)
139 cd08344 MhqB_like_N N-terminal 83.3 9.5 0.00021 24.3 7.0 29 107-135 2-30 (112)
140 PRK11700 hypothetical protein; 83.0 15 0.00033 26.5 9.3 46 11-57 37-82 (187)
141 cd08359 Glo_EDI_BRP_like_22 Th 82.5 8.2 0.00018 24.7 6.4 27 15-42 68-94 (119)
142 TIGR00068 glyox_I lactoylgluta 81.9 13 0.00029 25.2 7.5 29 13-42 86-114 (150)
143 PF02208 Sorb: Sorbin homologo 81.8 0.83 1.8E-05 24.8 1.0 23 13-35 11-33 (47)
144 cd07252 BphC1-RGP6_N_like N-te 80.5 12 0.00025 24.3 6.6 29 107-135 2-31 (120)
145 cd08364 FosX FosX, a fosfomyci 80.1 15 0.00032 24.4 7.1 54 107-161 4-60 (131)
146 cd04882 ACT_Bt0572_2 C-termina 79.3 5.1 0.00011 22.8 4.1 26 107-132 39-64 (65)
147 cd07257 THT_oxygenase_C The C- 79.2 12 0.00027 25.7 6.6 30 12-41 66-97 (153)
148 cd07262 Glo_EDI_BRP_like_19 Th 76.7 16 0.00034 23.6 6.3 48 109-160 2-54 (123)
149 cd07238 Glo_EDI_BRP_like_5 Thi 76.2 17 0.00037 23.0 7.1 29 13-42 57-85 (112)
150 cd07247 SgaA_N_like N-terminal 76.1 17 0.00037 23.0 7.1 29 13-42 61-89 (114)
151 cd07258 PpCmtC_C C-terminal do 76.1 17 0.00038 24.6 6.6 30 12-41 55-86 (141)
152 cd08351 ChaP_like ChaP, an enz 74.3 21 0.00045 23.1 6.5 48 107-159 4-52 (123)
153 cd07264 Glo_EDI_BRP_like_15 Th 74.0 19 0.00042 23.1 6.2 27 15-42 73-99 (125)
154 cd08343 ED_TypeI_classII_C C-t 73.3 23 0.0005 23.2 6.7 52 109-160 1-54 (131)
155 cd09013 BphC-JF8_N_like N-term 71.4 24 0.00053 22.7 7.3 29 107-135 6-35 (121)
156 cd07243 2_3_CTD_C C-terminal d 70.7 30 0.00064 23.4 6.7 29 13-41 67-97 (143)
157 cd07265 2_3_CTD_N N-terminal d 69.6 10 0.00022 24.5 4.1 29 107-135 4-33 (122)
158 cd09011 Glo_EDI_BRP_like_23 Th 69.4 27 0.00059 22.4 7.2 28 13-41 64-92 (120)
159 cd07256 HPCD_C_class_II C-term 69.3 28 0.00061 24.1 6.5 28 107-134 3-31 (161)
160 PRK06724 hypothetical protein; 69.1 31 0.00067 23.0 7.1 29 13-41 63-93 (128)
161 cd07240 ED_TypeI_classII_N N-t 69.0 26 0.00057 22.1 6.9 30 107-136 2-32 (117)
162 cd04895 ACT_ACR_1 ACT domain-c 68.7 23 0.0005 21.3 5.2 39 118-156 15-56 (72)
163 PRK13498 chemoreceptor glutami 68.4 12 0.00027 26.5 4.4 39 116-154 115-153 (167)
164 cd09014 BphC-JF8_C_like C-term 67.9 35 0.00075 23.8 6.7 30 106-135 5-35 (166)
165 cd09012 Glo_EDI_BRP_like_24 Th 67.9 30 0.00065 22.3 6.4 49 109-160 2-50 (124)
166 COG4747 ACT domain-containing 66.9 36 0.00078 22.9 7.7 27 109-135 110-136 (142)
167 cd04883 ACT_AcuB C-terminal AC 66.6 16 0.00034 21.3 4.1 28 107-134 41-70 (72)
168 cd08358 Glo_EDI_BRP_like_21 Th 66.5 37 0.00079 22.8 7.9 28 108-135 3-31 (127)
169 PRK13490 chemoreceptor glutami 66.3 14 0.00031 26.1 4.4 39 116-154 112-150 (162)
170 cd07267 THT_Oxygenase_N N-term 65.6 32 0.0007 21.9 7.1 28 13-41 57-84 (113)
171 cd08349 BLMA_like Bleomycin bi 65.6 30 0.00065 21.5 6.0 25 13-38 58-82 (112)
172 PRK13495 chemoreceptor glutami 65.3 16 0.00034 25.8 4.4 39 116-154 105-143 (159)
173 PRK13494 chemoreceptor glutami 64.7 17 0.00036 25.8 4.5 39 116-154 114-152 (163)
174 PRK04101 fosfomycin resistance 64.5 36 0.00077 22.7 6.1 29 12-41 62-92 (139)
175 COG3865 Uncharacterized protei 64.3 45 0.00099 23.1 11.2 42 110-160 80-124 (151)
176 PF03975 CheD: CheD chemotacti 64.2 12 0.00026 24.6 3.5 39 116-154 64-102 (114)
177 cd07266 HPCD_N_class_II N-term 64.2 16 0.00035 23.4 4.2 29 107-135 4-33 (121)
178 PRK13497 chemoreceptor glutami 62.2 19 0.00042 26.0 4.5 40 116-155 112-151 (184)
179 COG0346 GloA Lactoylglutathion 61.8 16 0.00035 23.0 3.9 30 107-136 2-32 (138)
180 PRK13488 chemoreceptor glutami 61.0 21 0.00045 25.1 4.4 39 116-155 107-145 (157)
181 cd07239 BphC5-RK37_C_like C-te 60.3 50 0.0011 22.3 6.3 28 107-134 4-32 (144)
182 cd08362 BphC5-RrK37_N_like N-t 60.0 42 0.00091 21.3 6.5 29 107-135 3-32 (120)
183 cd04897 ACT_ACR_3 ACT domain-c 59.8 37 0.00081 20.6 4.9 39 118-156 15-56 (75)
184 PRK13493 chemoreceptor glutami 59.4 22 0.00047 26.4 4.4 38 116-153 139-176 (213)
185 PRK13487 chemoreceptor glutami 59.2 22 0.00048 26.1 4.4 39 116-154 127-165 (201)
186 cd07246 Glo_EDI_BRP_like_8 Thi 59.1 43 0.00093 21.2 7.4 30 12-42 67-96 (122)
187 PRK13491 chemoreceptor glutami 58.5 24 0.00052 25.9 4.4 40 116-155 115-154 (199)
188 cd08361 PpCmtC_N N-terminal do 58.0 49 0.0011 21.5 6.6 29 107-135 6-35 (124)
189 PF07063 DUF1338: Domain of un 57.5 12 0.00026 29.3 3.0 45 14-59 35-84 (302)
190 cd07244 FosA FosA, a Fosfomyci 57.0 28 0.0006 22.5 4.4 29 107-135 1-30 (121)
191 cd07268 Glo_EDI_BRP_like_4 Thi 53.9 59 0.0013 22.7 5.5 31 109-139 3-36 (149)
192 PRK13489 chemoreceptor glutami 53.2 32 0.00069 25.9 4.5 38 116-153 125-162 (233)
193 COG1871 CheD Chemotaxis protei 52.8 41 0.00089 23.8 4.7 35 116-151 114-148 (164)
194 KOG4657 Uncharacterized conser 52.1 13 0.00028 27.7 2.2 20 23-42 146-165 (246)
195 PF07494 Reg_prop: Two compone 52.1 19 0.00041 16.4 2.1 12 145-156 9-20 (24)
196 COG3603 Uncharacterized conser 51.0 18 0.00039 24.2 2.6 25 109-133 103-127 (128)
197 PF09142 TruB_C: tRNA Pseudour 50.8 28 0.00061 19.8 3.1 41 117-161 5-45 (56)
198 cd04906 ACT_ThrD-I_1 First of 50.2 34 0.00074 21.0 3.7 29 107-135 40-72 (85)
199 COG3102 Uncharacterized protei 48.6 98 0.0021 22.1 6.4 30 12-41 38-67 (185)
200 cd04908 ACT_Bt0572_1 N-termina 48.0 44 0.00095 19.1 3.8 24 110-133 42-65 (66)
201 PRK11700 hypothetical protein; 47.9 77 0.0017 23.0 5.5 32 109-140 41-75 (187)
202 PF06923 GutM: Glucitol operon 43.1 25 0.00054 23.1 2.4 45 114-159 22-69 (109)
203 PF06185 YecM: YecM protein; 42.8 37 0.00081 24.6 3.3 32 108-139 35-69 (185)
204 KOG2003 TPR repeat-containing 40.2 23 0.0005 29.6 2.2 39 2-40 231-269 (840)
205 PRK09437 bcp thioredoxin-depen 39.9 1.2E+02 0.0025 20.5 6.3 53 107-159 64-137 (154)
206 cd08355 Glo_EDI_BRP_like_14 Th 38.0 1.1E+02 0.0023 19.5 6.9 29 13-42 68-96 (122)
207 cd08354 Glo_EDI_BRP_like_13 Th 37.7 1E+02 0.0023 19.3 7.4 48 109-160 2-50 (122)
208 PF08445 FR47: FR47-like prote 36.7 98 0.0021 18.9 4.3 21 21-42 62-82 (86)
209 COG1225 Bcp Peroxiredoxin [Pos 36.7 1.5E+02 0.0033 20.9 6.2 53 107-159 64-137 (157)
210 KOG2465 Uncharacterized conser 36.0 36 0.00079 26.7 2.5 25 104-128 165-189 (390)
211 COG5397 Uncharacterized conser 35.9 60 0.0013 25.2 3.7 60 101-161 151-212 (349)
212 KOG2792 Putative cytochrome C 35.1 76 0.0016 24.4 4.0 45 117-161 211-261 (280)
213 cd04885 ACT_ThrD-I Tandem C-te 34.2 78 0.0017 18.3 3.4 26 107-132 38-66 (68)
214 COG1834 N-Dimethylarginine dim 33.9 74 0.0016 24.5 3.9 37 115-151 37-73 (267)
215 COG3254 Uncharacterized conser 33.6 70 0.0015 20.9 3.2 34 119-162 27-60 (105)
216 PRK06704 RNA polymerase factor 33.2 37 0.00079 25.4 2.2 39 116-157 187-225 (228)
217 cd04909 ACT_PDH-BS C-terminal 32.9 49 0.0011 18.9 2.4 23 110-132 44-69 (69)
218 PF02630 SCO1-SenC: SCO1/SenC; 32.7 83 0.0018 22.2 3.9 49 108-159 117-172 (174)
219 cd04886 ACT_ThrD-II-like C-ter 32.6 80 0.0017 17.7 3.3 24 110-133 46-72 (73)
220 PF00379 Chitin_bind_4: Insect 32.3 73 0.0016 17.5 2.9 15 144-158 30-44 (52)
221 PF12897 Aminotran_MocR: Alani 31.6 1.6E+02 0.0034 24.3 5.5 48 107-159 345-394 (425)
222 PF13176 TPR_7: Tetratricopept 31.2 39 0.00084 16.8 1.5 17 21-37 12-28 (36)
223 PF10706 Aminoglyc_resit: Amin 31.1 1.2E+02 0.0026 21.7 4.2 26 110-135 46-71 (174)
224 PF07063 DUF1338: Domain of un 28.8 50 0.0011 25.9 2.4 30 10-40 181-216 (302)
225 COG2921 Uncharacterized conser 28.2 1.6E+02 0.0035 18.6 4.1 28 7-34 53-80 (90)
226 PF15121 TMEM71: TMEM71 protei 27.9 65 0.0014 22.0 2.4 24 124-155 63-86 (149)
227 COG3349 Uncharacterized conser 27.7 1.2E+02 0.0026 25.5 4.5 36 121-156 15-51 (485)
228 PRK14707 hypothetical protein; 26.5 1.3E+02 0.0027 30.5 4.7 44 117-160 2357-2406(2710)
229 PF13225 DUF4033: Domain of un 26.1 99 0.0022 19.4 2.8 25 27-51 49-73 (86)
230 PTZ00056 glutathione peroxidas 25.7 2.6E+02 0.0057 20.2 6.9 27 107-133 72-106 (199)
231 cd00034 ChSh Chromo Shadow Dom 25.1 45 0.00098 18.8 1.2 18 20-37 36-53 (54)
232 PF00585 Thr_dehydrat_C: C-ter 24.8 97 0.0021 19.4 2.8 30 107-136 50-82 (91)
233 cd01205 WASP WASP-type EVH1 do 24.7 1.1E+02 0.0023 20.0 3.0 21 15-35 82-102 (105)
234 PF00583 Acetyltransf_1: Acety 24.4 95 0.0021 18.0 2.7 24 14-38 59-83 (83)
235 smart00300 ChSh Chromo Shadow 24.3 48 0.001 19.1 1.2 18 21-38 43-60 (61)
236 PHA00450 host dGTPase inhibito 24.2 1.9E+02 0.004 17.9 4.2 43 117-159 11-57 (85)
237 cd04904 ACT_AAAH ACT domain of 24.1 1.6E+02 0.0036 17.3 4.8 36 117-152 13-51 (74)
238 PF11080 DUF2622: Protein of u 23.9 1.3E+02 0.0029 19.3 3.2 29 116-157 21-49 (96)
239 smart00671 SEL1 Sel1-like repe 23.7 68 0.0015 15.3 1.6 14 21-34 18-31 (36)
240 PF10922 DUF2745: Protein of u 23.5 2E+02 0.0043 18.0 4.0 41 116-156 10-54 (85)
241 KOG0178 20S proteasome, regula 23.5 85 0.0018 23.3 2.5 17 138-154 140-156 (249)
242 PRK10140 putative acetyltransf 23.4 1.7E+02 0.0036 19.5 4.1 30 13-43 112-142 (162)
243 PRK10234 DNA-binding transcrip 22.9 1.2E+02 0.0026 20.3 3.0 45 114-159 23-70 (118)
244 TIGR00318 cyaB adenylyl cyclas 22.6 1.5E+02 0.0034 20.9 3.8 24 111-134 6-29 (174)
245 PF01393 Chromo_shadow: Chromo 22.4 62 0.0013 18.5 1.4 17 22-38 41-57 (58)
246 TIGR00288 conserved hypothetic 22.2 1.8E+02 0.0039 20.6 3.9 29 107-135 105-135 (160)
247 PF10649 DUF2478: Protein of u 22.1 2.9E+02 0.0063 19.5 5.1 43 118-160 16-64 (159)
248 PF12142 PPO1_DWL: Polyphenol 22.1 1.2E+02 0.0026 17.2 2.5 18 144-161 11-28 (54)
249 COG0456 RimI Acetyltransferase 21.6 1.7E+02 0.0036 19.9 3.8 28 15-43 127-155 (177)
250 PF13508 Acetyltransf_7: Acety 21.4 75 0.0016 18.6 1.7 14 25-39 66-79 (79)
251 TIGR03168 1-PFK hexose kinase, 21.2 2.6E+02 0.0056 21.2 5.1 42 119-160 64-105 (303)
252 COG0253 DapF Diaminopimelate e 21.1 2E+02 0.0043 22.3 4.3 53 107-161 154-208 (272)
253 PF13756 Stimulus_sens_1: Stim 20.5 85 0.0018 20.5 1.9 13 144-156 20-32 (112)
254 PF10609 ParA: ParA/MinD ATPas 20.4 56 0.0012 20.2 1.0 40 116-160 40-80 (81)
No 1
>PLN02367 lactoylglutathione lyase
Probab=100.00 E-value=5e-31 Score=193.48 Aligned_cols=166 Identities=81% Similarity=1.353 Sum_probs=136.5
Q ss_pred CCCCCCCceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEE
Q 030857 4 PTDTSCNKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIEL 83 (170)
Q Consensus 4 ~~~~~~~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel 83 (170)
++++.|.++.++|++|.|+|+++|++||+++|||++..+..+++.++.++|++.++....+.+...+.+|...++..|||
T Consensus 66 ~~~~~t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LEL 145 (233)
T PLN02367 66 SPDEATKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIEL 145 (233)
T ss_pred CCCCCCCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEE
Confidence 57889999999999999999999999999999999999988888889999998654332233333466787777789999
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecCcc
Q 030857 84 THNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 163 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 163 (170)
+++++.+..+....+..++..+.|++||||.|+|+++++++|++.|+++...|..+.+.+.+|++|||||+|||+|...+
T Consensus 146 t~n~g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 146 THNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred ecCCCCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecccc
Confidence 98877654343334666666667999999999999999999999999999888776666688999999999999998876
Q ss_pred cccCCC
Q 030857 164 GKIGGS 169 (170)
Q Consensus 164 ~~~~~~ 169 (170)
....++
T Consensus 226 ~~~~~~ 231 (233)
T PLN02367 226 GTTTVN 231 (233)
T ss_pred cccccc
Confidence 655443
No 2
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.97 E-value=4.5e-28 Score=174.22 Aligned_cols=165 Identities=80% Similarity=1.364 Sum_probs=125.3
Q ss_pred CCCCCCCceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEE
Q 030857 4 PTDTSCNKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIEL 83 (170)
Q Consensus 4 ~~~~~~~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel 83 (170)
+++.+|.+++++|++|.|+|+++|++||+++|||++..+...++.++.+++++.++....++++.....|.......|||
T Consensus 18 ~~~~~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL 97 (185)
T PLN03042 18 NPDEATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIEL 97 (185)
T ss_pred CCCCCCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEE
Confidence 57788999999999999999999999999999999999877777778888887543222222333345555556779999
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecCcc
Q 030857 84 THNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 163 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 163 (170)
+++.+....+....+..++..+.|+.||+|.|+|+++++++|+++|+++...|..+...+.+||+||||++|||++...+
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 98 THNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred EEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECCCc
Confidence 98655432111111333333345899999999999999999999999998777554344578899999999999999887
Q ss_pred cccCC
Q 030857 164 GKIGG 168 (170)
Q Consensus 164 ~~~~~ 168 (170)
.-+++
T Consensus 178 ~~~~~ 182 (185)
T PLN03042 178 GGITA 182 (185)
T ss_pred hhhcc
Confidence 76655
No 3
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.9e-26 Score=156.61 Aligned_cols=157 Identities=54% Similarity=0.875 Sum_probs=134.4
Q ss_pred CCCCCCCceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEE
Q 030857 4 PTDTSCNKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIEL 83 (170)
Q Consensus 4 ~~~~~~~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel 83 (170)
..++++.++.+.|..++|+|+.+|+.||.+++|+.+.....+.+..+..++++.......|........|.......+||
T Consensus 13 ~~~~~~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~EL 92 (170)
T KOG2944|consen 13 RADSSTPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLEL 92 (170)
T ss_pred ccCCCCchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceee
Confidence 34566777899999999999999999999999999998877777778888888865544555555555888888999999
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecC
Q 030857 84 THNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
.++++.+.++.. .+..++..++|++||||.|+|+++++++++++|+++...+.+|....++|+.||||+.|||..+.
T Consensus 93 thn~Gtes~~~~-~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 93 THNWGTESPPDQ-AYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred ecCCCCCCCcch-hhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeecC
Confidence 999998876533 37888888899999999999999999999999999999998888877899999999999998653
No 4
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.90 E-value=5.7e-22 Score=138.62 Aligned_cols=139 Identities=53% Similarity=0.866 Sum_probs=101.2
Q ss_pred CCCCCCCCceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEE
Q 030857 3 LPTDTSCNKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIE 82 (170)
Q Consensus 3 ~~~~~~~~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 82 (170)
+-.+|-|.+++++|+.|.|+|+++|.+||+++|||++..+...++..+..++++.++.. ....++
T Consensus 7 ~~~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~ 71 (150)
T TIGR00068 7 LVADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDET---------------SAAVIE 71 (150)
T ss_pred cccCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCC---------------CccEEE
Confidence 44578889999999999999999999999999999998765545444455666543210 023455
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCC--CCccceEEEEECCCCCEEEEEec
Q 030857 83 LTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD--GGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~--~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
+........ ... ..+..|++|.|+|+++++++|.++|+++..++. .....+.+||+||||++|||++.
T Consensus 72 ~~~~~~~~~------~~~----~~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 141 (150)
T TIGR00068 72 LTHNWGTEK------YDL----GNGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQR 141 (150)
T ss_pred EeecCCCCc------ccC----CCceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEC
Confidence 543222111 111 126789999999999999999999999887663 22334578899999999999998
Q ss_pred Cccccc
Q 030857 161 KTIGKI 166 (170)
Q Consensus 161 ~~~~~~ 166 (170)
....+.
T Consensus 142 ~~~~~~ 147 (150)
T TIGR00068 142 KSTKDG 147 (150)
T ss_pred Cchhhh
Confidence 776654
No 5
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.89 E-value=1.1e-21 Score=135.70 Aligned_cols=128 Identities=16% Similarity=0.264 Sum_probs=89.8
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCC-----------cceEEEeeeccCCCCCCCCcccceeeecCCCcE
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPAT 80 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
.+++|++|.|+|+++|++||++ |||++..+...++ ....+.++..+ .+...
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----------------~g~~~ 63 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP-----------------DGHSR 63 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC-----------------CCCce
Confidence 4799999999999999999998 9999876643221 11222333211 23568
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCc-cceEEEEECCCCCEEEEEe
Q 030857 81 IELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 81 lel~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iel~~ 159 (170)
+||+....+....... . . .....|+.||||.|+|+++++++|+++|+++..++.... ..+.+||+||||+.|||+|
T Consensus 64 iel~~~~~~~~~~~~~-~-~-~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 64 LELSKFHHPAVIADHR-P-A-PVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred EEEEEecCCCCcCcCC-C-C-CCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 9998754432211110 0 0 112347889999999999999999999999987654333 3457899999999999998
Q ss_pred c
Q 030857 160 L 160 (170)
Q Consensus 160 ~ 160 (170)
.
T Consensus 141 ~ 141 (142)
T cd08353 141 Q 141 (142)
T ss_pred c
Confidence 5
No 6
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.88 E-value=6.7e-21 Score=127.81 Aligned_cols=121 Identities=60% Similarity=1.067 Sum_probs=90.3
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 93 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 93 (170)
++|++|.|+|++++++||+++||+++......++..+..+++..+.. .+...+++........
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~l~~~~~~~~-- 63 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDE---------------DSEGVLELTYNWGTEE-- 63 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCC---------------CCccEEEEEecCCCCC--
Confidence 58999999999999999999999999887554544556666664320 0135677765322211
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEE
Q 030857 94 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 158 (170)
Q Consensus 94 ~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 158 (170)
+... ..+..|++|.|+|+++++++++++|+++...|.....++.+||+|||||+|||+
T Consensus 64 ---~~~~----~~~~~~i~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 64 ---PYDN----GNGFGHLAFAVDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred ---CcCC----CCCeEEEEEEeCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 0111 126789999999999999999999999998876554456789999999999985
No 7
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.88 E-value=6.3e-21 Score=129.31 Aligned_cols=116 Identities=29% Similarity=0.505 Sum_probs=85.6
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCC-----------cceEEEeeeccCCCCCCCCcccceeeecCCCcE
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPAT 80 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
+++.|++|.|+|+++|++||+++|||++.++..+++ ..+..+++...+. .....
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~---------------~~~~~ 65 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPE---------------DDHFV 65 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCC---------------CCccE
Confidence 478999999999999999999999999988765554 3444455543211 12568
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 81 IELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 81 lel~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
+||+++++..+ ++.|. + |++|.|++. ++.++|+++|+++...+. +.+|++||||+.|||+.+
T Consensus 66 lEL~~n~~~~~------~~~g~----~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-----~~~fi~DPDG~~ie~~~~ 127 (127)
T cd08358 66 VELTYNYGIGD------YELGN----D--FLGITIHSK-QAVSNAKKHNWPVTEVED-----GVYEVKAPGGYKFYLIDK 127 (127)
T ss_pred EEeEecCCCCC------CCCCC----C--EEEEEEECH-HHHHHHHHCCCceecCCC-----CEEEEECCCCCEEEEecC
Confidence 99987655432 33332 3 677777776 566999999999887664 168999999999999863
No 8
>PRK10291 glyoxalase I; Provisional
Probab=99.87 E-value=9.1e-21 Score=129.14 Aligned_cols=124 Identities=41% Similarity=0.753 Sum_probs=88.5
Q ss_pred EEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 030857 18 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 97 (170)
Q Consensus 18 ~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 97 (170)
+|.|+|+++|++||+++|||++..+...++..+.+++++.++.. ....+++........
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~------ 59 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPET---------------EEAVIELTYNWGVDK------ 59 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCC---------------CcceEEeeecCCCCC------
Confidence 47899999999999999999998876555555667777643210 134566654322111
Q ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCcc--ceEEEEECCCCCEEEEEecCccccc
Q 030857 98 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKTIGKI 166 (170)
Q Consensus 98 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~~~~~~ 166 (170)
...+ .++.|+||.|+|+++++++|+++|+++...+..... .+.+||+|||||.|||++..+...+
T Consensus 60 ~~~g----~~~~hlaf~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~~ 126 (129)
T PRK10291 60 YELG----TAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGRG 126 (129)
T ss_pred CcCC----CCeeEEEEEeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccccc
Confidence 1112 267899999999999999999999998865432222 2467889999999999998754443
No 9
>PRK11478 putative lyase; Provisional
Probab=99.87 E-value=1.1e-20 Score=128.41 Aligned_cols=123 Identities=24% Similarity=0.292 Sum_probs=84.3
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCC-cceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
.+++|++|.|+|++++++||+++|||++..+...++ ..+.. .+... +...++++....+.
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~------------------~~~~l~l~~~~~~~ 65 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALN------------------GQYVIELFSFPFPP 65 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecC------------------CCcEEEEEEecCCC
Confidence 468999999999999999999999999865422111 11211 11111 14577776543222
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCC-ccceEEEEECCCCCEEEEEec
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iel~~~ 160 (170)
..+. .....++.|++|.|+|+++++++|+++|+++...+... ...+.+||+|||||.|||+|.
T Consensus 66 ~~~~-------~~~~~g~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 66 ERPS-------RPEACGLRHLAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred CCCC-------CCCCCceeEEEEEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 1110 11123678999999999999999999999987543222 223578999999999999874
No 10
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.87 E-value=1.3e-20 Score=133.52 Aligned_cols=128 Identities=21% Similarity=0.231 Sum_probs=87.9
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeee--cC----------------CcceEEEeeeccCCCCCCCCcccceee
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLD--FP----------------EMKFSLYFLGYEDTASAPADPVDRTVW 73 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (170)
.+++||+|.|+|+++|++||+++|||++..+.. .. ...+.++++..+
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------------- 67 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTG--------------- 67 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecC---------------
Confidence 479999999999999999999999998864210 00 011334444432
Q ss_pred ecCCCcEEEEEeccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeec-CC---CCc-cceEEEEE
Q 030857 74 TFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKK-PD---GGK-LKGVAFIK 148 (170)
Q Consensus 74 ~~~~~~~lel~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~-~~---~~~-~~~~~~~~ 148 (170)
++..+||+....+..+... . .....|+.|+||.|+|+++++++++++|+++... +. .+. ..+.+||+
T Consensus 68 ---~~~~ieL~~~~~~~~~~~~--~---~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 139 (162)
T TIGR03645 68 ---DRIGVELFEFKNQENPEDN--F---EYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYME 139 (162)
T ss_pred ---CCCcEEEEeccCCCCCCcc--c---ccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEE
Confidence 2456999876543321110 0 0112478999999999999999999999876432 22 111 12578999
Q ss_pred CCCCCEEEEEecCc
Q 030857 149 DPDDYWIEIFDLKT 162 (170)
Q Consensus 149 DPdG~~iel~~~~~ 162 (170)
|||||+|||+++..
T Consensus 140 DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 140 DPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCEEEEEEcCh
Confidence 99999999999865
No 11
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.87 E-value=1.1e-20 Score=127.24 Aligned_cols=121 Identities=25% Similarity=0.338 Sum_probs=85.1
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+++|++|.|+|+++|++||+++|||++......+..++..+|+..++ +..++++........
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~ 62 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD------------------GARLELMTRPDIAPS 62 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC------------------CcEEEEEcCcccCCC
Confidence 57999999999999999999999999865543333344445554422 356777643221110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEE
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 158 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~ 158 (170)
. . .....++.|+||.|+ |+++++++|+++|+++...|.....+ +.++++|||||.|||.
T Consensus 63 ~----~---~~~~~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 63 P----N---EGERTGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred c----c---cCCCCceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 0 0 112247789999996 48999999999999998766433332 3577999999999983
No 12
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.86 E-value=2.5e-20 Score=128.24 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=87.8
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 93 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 93 (170)
++|++|.|.|++++++||+++|||++..+.... .....++.. +...+++........
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~-------------------g~~~l~l~~~~~~~~-- 57 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQ-------------------GDINFVLNSPLNSFA-- 57 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEc-------------------CCEEEEEecCCCCCC--
Confidence 589999999999999999999999998764322 122333331 134566643222111
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCcc-ceEEEEECCCCCEEEEEecCc
Q 030857 94 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 94 ~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iel~~~~~ 162 (170)
....+. .....+..|++|.|+|+++++++|+++|+++..+|...++ .+.+|++||||++|||+++..
T Consensus 58 ~~~~~~--~~~~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 58 PVADFL--EKHGDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred chHHHH--HhcCCceEEEEEEeCCHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 000000 0112367899999999999999999999999988876333 458899999999999999654
No 13
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.86 E-value=7e-20 Score=123.11 Aligned_cols=122 Identities=24% Similarity=0.323 Sum_probs=85.8
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCC-cceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
++++|++|.|.|++++++||+++||++........+ ..+.+ .+... +...++++......
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~------------------~~~~i~l~~~~~~~ 62 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLN------------------GGYQLELFSFPNPP 62 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecC------------------CCcEEEEEEcCCCC
Confidence 478999999999999999999999999876533222 22222 22211 13567776543221
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCcc-ceEEEEECCCCCEEEEEe
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iel~~ 159 (170)
... . .....+..|++|.|+|+++++++++++|+++...+..... .+.+|++||+||+|||+|
T Consensus 63 ~~~----~---~~~~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 63 ERP----S---YPEACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCC----C---CCcCCCceEEEEEeCCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 100 0 0112377899999999999999999999998876644333 347899999999999976
No 14
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.84 E-value=4.7e-20 Score=124.84 Aligned_cols=124 Identities=25% Similarity=0.370 Sum_probs=87.2
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+++|++|.|+|++++++||+++||+++......++.++..+++..+ ...++|.........
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~l~~~~~~~~~ 61 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG-------------------NTKVELLEPLGEDSP 61 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC-------------------CEEEEEEecCCCCCh
Confidence 5799999999999999999999999997654333334455555432 346777653222110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeec-CCCCccc-eEEEE--ECCCCCEEEEEe
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKK-PDGGKLK-GVAFI--KDPDDYWIEIFD 159 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~-~~~~~~~-~~~~~--~DPdG~~iel~~ 159 (170)
...+... ...+..|+||.|+|+++++++|+++|+++..+ |..+.++ +.+|+ +||||++||++|
T Consensus 62 --~~~~~~~--~~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 62 --IAKFLEK--NGGGIHHIAIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred --HHHHHhc--CCCceEEEEEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 0001011 12377899999999999999999999999864 5555444 45566 799999999976
No 15
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.83 E-value=6.5e-19 Score=122.28 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=80.9
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcc-eEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK-FSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
.+++|++|.|+|++++++||+++|||++..+...++.. ....|+..+.. ...+.+.. .+
T Consensus 5 ~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-----------------~h~~~~~~--~~- 64 (143)
T cd07243 5 HRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-----------------PHDIAFVG--GP- 64 (143)
T ss_pred ceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-----------------cceEEEec--CC-
Confidence 47999999999999999999999999987664332222 12334432211 12333321 01
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeCCHHH---HHHHHHhcCCeEeecCCC-Cc-cceEEEEECCCCCEEEEEecC
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVDDVYK---ACERFERLGVEFAKKPDG-GK-LKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~di~~---~~~~l~~~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iel~~~~ 161 (170)
..+++|+||.|+|+++ ++++|+++|+++...|.. +. .++.+||+|||||.|||+...
T Consensus 65 --------------~~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~~ 126 (143)
T cd07243 65 --------------DGKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAGG 126 (143)
T ss_pred --------------CCCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecCc
Confidence 1267899999999887 568999999998765532 21 245789999999999997643
No 16
>PLN02300 lactoylglutathione lyase
Probab=99.83 E-value=8.6e-19 Score=134.66 Aligned_cols=127 Identities=37% Similarity=0.636 Sum_probs=93.0
Q ss_pred ceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 11 ~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
..+++|++|.|+|+++|++||+++|||++..+...++..+...++..+... ....+++....+..
T Consensus 22 i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~lel~~~~~~~ 86 (286)
T PLN02300 22 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SNFVVELTYNYGVD 86 (286)
T ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCC---------------CceEEEEeccCCCC
Confidence 458999999999999999999999999998765545445556666543210 13466775432221
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCcc--ceEEEEECCCCCEEEEEecCc
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~~ 162 (170)
. ... ..++.|++|.|+|+++++++++++|+++...|...+. .+.+||+|||||.|||+++..
T Consensus 87 ~------~~~----~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 87 K------YDI----GTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred c------ccc----CCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 1 111 2377899999999999999999999998877643322 346789999999999999753
No 17
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.82 E-value=3.2e-19 Score=125.14 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=82.3
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecC-CcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
+++||+|.|+|+++|++||+++|||++......+ ......+|+..+.. ...++.....
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~---- 59 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRG-----------------EEYVDHHTLA---- 59 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCC-----------------CCcccchHHH----
Confidence 5799999999999999999999999987654433 22234556554221 0011110000
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHH---HHHHhcCCeEeecCCCCcc--ceEEEEECCCCCEEEEEecCc
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~---~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~~ 162 (170)
+.. ....+++|+||.|+|++++. ++|+++|+++...+..... ..++|++|||||+|||.....
T Consensus 60 ------l~~--~~~~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 60 ------LAQ--GPESGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred ------Hhc--CCCCceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 000 00237899999999999986 9999999998866533222 236799999999999997653
No 18
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.81 E-value=3e-18 Score=114.06 Aligned_cols=119 Identities=19% Similarity=0.336 Sum_probs=83.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC
Q 030857 16 FTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 95 (170)
Q Consensus 16 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~ 95 (170)
|++|.|.|++++++||+++|||++..+....+ +...+.+...+. ....+++........ .
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~--~- 60 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS----------------PETSLVLAPPANPAA--M- 60 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC----------------CeeEEEEeCCCCccc--c-
Confidence 89999999999999999999999987754222 233343432210 023455543222111 0
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEe
Q 030857 96 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 96 ~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 159 (170)
. .....+..|++|.|+|+++++++++++|+++...+....+++.+|++|||||.|||+|
T Consensus 61 ----~-~~~~~~~~~~~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 61 ----S-GLQPGGTPGLVLATDDIDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred ----c-cccCCCceEEEEEehHHHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 0 0112367799999999999999999999999987744445678999999999999975
No 19
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.80 E-value=4.3e-18 Score=113.15 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=80.9
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 93 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 93 (170)
+.|++|.|+|++++++||+++||+++..... .... .+++..++ ...+.++......
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~--~~~~~~~~------------------~~~~~~~~~~~~~--- 56 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGD--YAVFSTGG------------------GAVGGLMKAPEPA--- 56 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCc--eEEEEeCC------------------ccEEEEecCCCCC---
Confidence 4799999999999999999999999976542 1122 23333221 1234443322110
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCc-cceEEEEECCCCCEEEEEe
Q 030857 94 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 94 ~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iel~~ 159 (170)
.......|++|.|+|+++++++|+++|+++..+|...+ .++.+|++|||||.|+|+|
T Consensus 57 ---------~~~~~~~~~~f~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 57 ---------AGSPPGWLVYFAVDDVDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred ---------CCCCCeEEEEEEeCCHHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 01124579999999999999999999999988775444 4568999999999999975
No 20
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.80 E-value=2.8e-18 Score=115.88 Aligned_cols=110 Identities=17% Similarity=0.317 Sum_probs=79.7
Q ss_pred ceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 11 ~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
.++++|+.|.|+|+++|++||+++||++..... ..+ .++..+. +..+++... ..
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~------------------~~~l~~~~~--~~ 55 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPF--AVVKLDN------------------GVSLDFAQP--DG 55 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCE--EEEEcCC------------------CcEEEEecC--CC
Confidence 468999999999999999999999999987632 112 1122111 334555321 10
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeC--CHHHHHHHHHhcCCeEeecCCCC--------ccceEEEEECCCCCEEEEEec
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDGG--------KLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~~~~--------~~~~~~~~~DPdG~~iel~~~ 160 (170)
. .+..|++|.++ |+++++++++++|+++...|... ..++.+||+|||||.|||++.
T Consensus 56 ~--------------~~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 56 E--------------IPPQHYAFLVSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred C--------------CCcceEEEEeCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 0 13469999887 69999999999999987665321 234689999999999999986
No 21
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=2.6e-18 Score=115.44 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=77.4
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccC-CCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWG-TES 91 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~-~~~ 91 (170)
++.|+.|.|+|+++|++||+++||+++..... .. ..+ .. +..+.+..... ...
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~-~~~-~~--------------------~~~l~~~~~~~~~~~ 55 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----EN-VTF-EG--------------------GFALQEGYSWLEGIS 55 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ce-EEE-ec--------------------cceeccchhhhccCC
Confidence 78999999999999999999999999865321 11 111 11 11111100000 000
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCC-eEeecCCCCccc-eEEEEECCCCCEEEEEec
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGV-EFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~-~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~ 160 (170)
... .. ...+..|++|.|+|+++++++|+++|+ ++..+|...+++ +.+||+|||||+|||.+.
T Consensus 56 ~~~---~~----~~~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 56 KAD---II----EKSNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred ccc---cc----ccCCceEEEEEehhhHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 000 00 112447999999999999999999985 777777665554 689999999999999874
No 22
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.80 E-value=3.5e-18 Score=120.02 Aligned_cols=120 Identities=19% Similarity=0.282 Sum_probs=83.6
Q ss_pred CCceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecC---CcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEe
Q 030857 9 CNKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP---EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 85 (170)
Q Consensus 9 ~~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~ 85 (170)
|...+++|++|.|+|++++++||+++||+++....... +......++..++. ...+.+..
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~i~~~~ 67 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR-----------------HHSLALAE 67 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC-----------------CCCEEEEc
Confidence 34568999999999999999999999999987653221 11233445443211 22344421
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHH---HHHHHHHhcCCeEeecCCCCc--cceEEEEECCCCCEEEEEec
Q 030857 86 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~---~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iel~~~ 160 (170)
. . ...++.|++|.|+|++ +++++|+++|+++...+.... ..+.+|++||||+.|||...
T Consensus 68 ~--~--------------~~~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 68 G--P--------------GPKRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred C--C--------------CCceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 1 1 0127789999998755 589999999999887653222 23579999999999999865
Q ss_pred C
Q 030857 161 K 161 (170)
Q Consensus 161 ~ 161 (170)
.
T Consensus 132 ~ 132 (154)
T cd07237 132 G 132 (154)
T ss_pred c
Confidence 4
No 23
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.80 E-value=2.4e-18 Score=113.31 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=81.1
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 93 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 93 (170)
++|++|.|.|++++++||+++||+++..+...+. ...++..++ ...+++.........
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~------------------~~~i~l~~~~~~~~~- 58 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGD------------------GPQLHLIEEDPPDAL- 58 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCC------------------CcEEEEEecCCCccc-
Confidence 5899999999999999999999999876533221 122333221 235677543322110
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEE
Q 030857 94 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 157 (170)
Q Consensus 94 ~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel 157 (170)
.....+..|++|.|+|+++++++++++|+++...+......+.+|++||||+.|||
T Consensus 59 --------~~~~~~~~~~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 59 --------PEGPGRDDHIAFRVDDLDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred --------cCCCcccceEEEEeCCHHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 01123567999999999999999999999988776543334578999999999996
No 24
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.80 E-value=4.2e-18 Score=114.62 Aligned_cols=122 Identities=21% Similarity=0.275 Sum_probs=83.1
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCc-ceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
+++|++|.|.|++++++||+++|||++..+....+. .....++..... .++..++|+.......
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~~ 65 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLG---------------SPGTLLTFFEWPDAGP 65 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCC---------------CCCCEEEEEecCCCCC
Confidence 478999999999999999999999999877543221 112233322100 0145677765432211
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEE
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 158 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 158 (170)
. ......+..|++|.|+ ++++++++++++|+++...+.. ..++.+||+|||||+|||+
T Consensus 66 ~--------~~~~~~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 66 K--------GRRGPGQIHHIAFSVPSEASLDAWRERLRAAGVPVSGVVDH-FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred C--------CCCCCCcEEEEEEEcCCHHHHHHHHHHHHHcCCcccceEee-cceEEEEEECCCCCEEEeC
Confidence 0 0112236789999998 5799999999999998754432 2346789999999999985
No 25
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.79 E-value=6.4e-18 Score=116.63 Aligned_cols=115 Identities=18% Similarity=0.289 Sum_probs=82.4
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|+.|.|+|++++++||+++||+++..+. + ..+++..+ +..+.+......+
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~---~---~~~~~~~~-------------------g~~l~l~~~~~~~- 56 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKG---R---KTAYFDLN-------------------GLWIALNEEKDIP- 56 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeec---C---eeEEEecC-------------------CeEEEeeccCCCC-
Confidence 47899999999999999999999999987542 1 12333321 2345443211110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC--CHHHHHHHHHhcCCeEeecCCC-CccceEEEEECCCCCEEEEEecC
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
.. ....++.|++|.++ |+++++++++++|+++...+.. ...++.+||+|||||+|||.+..
T Consensus 57 --------~~-~~~~~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 57 --------RN-EIHQSYTHIAFSIEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred --------Cc-cCCCCeeEEEEEecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence 00 11236789999998 9999999999999998765533 23456899999999999998754
No 26
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.79 E-value=6.5e-18 Score=113.80 Aligned_cols=113 Identities=23% Similarity=0.284 Sum_probs=79.4
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|+.|.|+|+++|++||+++|||++..... +. ..++...+. .....+.+. ...
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~---------------~~~~~~~l~--~~~-- 58 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDE---------------FDHHSIVLR--EAD-- 58 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCC---------------CcccEEEec--cCC--
Confidence 589999999999999999999999999876532 11 122322110 002233331 111
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCC-C-ccceEEEEECCCCCEEEEEecC
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG-G-KLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~-~-~~~~~~~~~DPdG~~iel~~~~ 161 (170)
..++.|++|.|+ |+++++++++++|+++...|.. . ..++.+||+|||||.|||....
T Consensus 59 -------------~~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 59 -------------TAGLDFMGFKVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred -------------CCCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 115689999997 7999999999999998765532 2 2245799999999999998653
No 27
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.79 E-value=7.8e-18 Score=119.08 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=77.9
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
++++|++|.|+|+++|++||+++|||++..............++...+. ...+.+.. ..
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~i~l~~--~~-- 60 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG-----------------VHDTALTG--GN-- 60 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC-----------------cceEEEec--CC--
Confidence 4899999999999999999999999998754332222223344432211 12333321 11
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEe--ecCCC-Cc-cceEEEEECCCCCEEEEEecC
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFA--KKPDG-GK-LKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~--~~~~~-~~-~~~~~~~~DPdG~~iel~~~~ 161 (170)
..++.|++|.|+| +++++++|+++|++.. ..|.. +. ..+++||+|||||.|||++..
T Consensus 61 -------------~~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 61 -------------GPRLHHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred -------------CCceeEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 1167899999985 7888899999998632 23321 11 234689999999999998644
No 28
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.79 E-value=6.2e-18 Score=115.62 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=80.1
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcce-EEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
.+++|++|.|+|++++++||+++||+.+..+........ ...++.. +...+++... ..
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~i~l~~~--~~ 61 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLI-------------------GGLWIAIMEG--DS 61 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEc-------------------CCeEEEEecC--CC
Confidence 379999999999999999999999998766532110000 0011111 1235555421 11
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeC--CHHHHHHHHHhcCCeEeecCC-CCccceEEEEECCCCCEEEEEecCc
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
. ...+..|++|.|+ ++++++++|+++|+++..... ....++.+||+|||||.|||.....
T Consensus 62 ~------------~~~~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~~~ 124 (131)
T cd08364 62 L------------QERTYNHIAFKISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTGTL 124 (131)
T ss_pred C------------CCCCceEEEEEcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecCCH
Confidence 0 0125689999998 799999999999998765432 1223568999999999999987643
No 29
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.79 E-value=8.6e-18 Score=118.39 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=83.4
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+++|++|.|+|++++++||+++|||++..+.. .. ..+...+.. .+..+.+........
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~--~~~~~~~~~----------------~~~~l~l~~~~~~~~- 58 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DR--VRLEEGGGG----------------PGAVVDVLEEPDQPR- 58 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CE--EEEEecCCC----------------CCCEEEEEeCCCCCC-
Confidence 47999999999999999999999999987632 11 222222100 145777765321110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecCc
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
. .....++.|++|.|+| +++++++|+++|+.+.. +....+++.+||+|||||.|||.....
T Consensus 59 -----~---~~~~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~-~~~~~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 59 -----G---RPGAGTVHHVAFRVPDDEELEAWKERLEALGLPVSG-IVDRFYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred -----C---cccCCceEEEEEECCCHHHHHHHHHHHHHCCCCccc-ccccccEEEEEEECCCCcEEEEEECCC
Confidence 0 0112367899999998 99999999999997543 333233467899999999999998653
No 30
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=3.2e-17 Score=110.33 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=81.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC
Q 030857 16 FTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 95 (170)
Q Consensus 16 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~ 95 (170)
...|.|+|++++++||+++||+++.......+..+....+..+ ...+.+..........
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~~~~~~~~-- 60 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG-------------------DGGVMVGSVRDDYRAS-- 60 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC-------------------CEEEEEecCCCccccc--
Confidence 3578999999999999999999998765433333333334332 2344443322111100
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEEe
Q 030857 96 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 96 ~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~ 159 (170)
. ......+..|++|.|+|+++++++++++|+++..+|...+++ +.++++|||||+|+|.+
T Consensus 61 --~--~~~~~~~~~~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 61 --S--ARAGGAGTQGVYVVVDDVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGT 121 (122)
T ss_pred --c--cccCCCceEEEEEEECCHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEec
Confidence 0 001112457999999999999999999999999887655554 57889999999999975
No 31
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=2.2e-17 Score=111.30 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=77.8
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC--C
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE--S 91 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~--~ 91 (170)
+.|+.|.|+|++++.+||+++|||++..... ...+.. +..+ ...+.+....... .
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~ 57 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG-------------------ETTLAFASHDLAESNL 57 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC-------------------cEEEEEEccccccccc
Confidence 4699999999999999999999999865422 112211 1110 1222222111000 0
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEEec
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~ 160 (170)
.....+ ......+ +..|++|.|+|+++++++++++|+++..++...+++ +.++++|||||.|||+++
T Consensus 58 ~~~~~~-~~~~~~~-~~~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 58 KGGFVK-ADPAQPP-AGFEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred ccCccC-CccccCC-CcEEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 000000 0000111 335999999999999999999999998877555444 478899999999999874
No 32
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=2.2e-17 Score=111.34 Aligned_cols=118 Identities=23% Similarity=0.356 Sum_probs=83.2
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
++++|+.|.|.|++++++||+++|||++.... + . .+++..++. ...+.+........
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~~-----------------~~~l~l~~~~~~~~ 57 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGGK-----------------RPLLVLEEDPDAPP 57 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCCC-----------------eEEEEEEeCCCCCc
Confidence 37999999999999999999999999998762 1 1 233433210 24566644322110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecCc
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
. .....+..|++|.|+ ++++++++++++|+++.... ....++.+|++|||||+|||....+
T Consensus 58 -~--------~~~~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 58 -A--------PPGATGLYHFAILLPSRADLAAALRRLIELGIPLVGAS-DHLVSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred -c--------cCCCCcEEEEEEECCCHHHHHHHHHHHHHcCCceeccc-cccceeEEEEECCCCCEEEEEEecC
Confidence 0 011236789999997 49999999999999875433 3333457899999999999987654
No 33
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.78 E-value=2.5e-17 Score=112.95 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=81.0
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+++|++|.|+|+++|++||+++||+++..... . ...|+..++.. ....+.+... +.
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~---------------~~~~i~l~~~--~~-- 58 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGG---------------DHHNLFLIKT--PA-- 58 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCC---------------CCcEEEEecC--CC--
Confidence 79999999999999999999999999876532 1 23444432100 1235555321 10
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHH---HHHHhcCCeEeecCCCCcc--ceEEEEECCCCCEEEEEecCc
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~di~~~~---~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~~ 162 (170)
...+++|++|.|+|++++. ++|+++|+++...+...+. .+++||+||+|+.|||.....
T Consensus 59 -----------~~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 59 -----------PMAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred -----------CCCcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 0137899999999888776 5999999998765533222 346899999999999996543
No 34
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.78 E-value=4.5e-18 Score=116.30 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=81.6
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 93 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 93 (170)
++||+|.|+|++++++||+++||+++.... + . ..++..+ +..+++......+.
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~-~--~~~~~~~-------------------~~~l~l~~~~~~~~-- 53 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---E-K--TAYFTIG-------------------GTWLALNEEPDIPR-- 53 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---C-c--cceEeeC-------------------ceEEEEEccCCCCc--
Confidence 589999999999999999999999986532 1 1 1223321 23455533221100
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCC--HHHHHHHHHhcCCeEeecCCC-CccceEEEEECCCCCEEEEEecCccc
Q 030857 94 DFKGYHNGNSEPRGFGHIGITVDD--VYKACERFERLGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDLKTIG 164 (170)
Q Consensus 94 ~~~~~~~~~~~~~g~~hl~f~v~d--i~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~DPdG~~iel~~~~~~~ 164 (170)
.....+..|++|.|++ +++++++++++|+++...+.. ...++.+||+|||||+|||.+.....
T Consensus 54 --------~~~~~~~~hiaf~v~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~~~~ 119 (131)
T cd08363 54 --------NEIRQSYTHIAFTIEDSEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGTLAE 119 (131)
T ss_pred --------CCcCccceEEEEEecHHHHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCcHHH
Confidence 0112367899999984 999999999999998765432 23456899999999999999876544
No 35
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.78 E-value=6.3e-18 Score=114.17 Aligned_cols=123 Identities=24% Similarity=0.353 Sum_probs=85.4
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecC-CcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
++|++|.|+|++++.+||+++||+++....... +.....+++..+ +..+++.........
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~l~l~~~~~~~~~ 61 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG-------------------NVQIELIEPLDDDSP 61 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC-------------------CEEEEEEEECCCCCc
Confidence 579999999999999999999999998765432 223445555532 467888764332111
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCC-CCccceEEEEECCC---CCEEEEEe
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPD---DYWIEIFD 159 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPd---G~~iel~~ 159 (170)
.. .+ . .....+..|++|.|+|+++++++++++|+++...+. ....++.+++.||+ |++|||+|
T Consensus 62 ~~--~~-~-~~~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 62 IA--KF-L-EKRGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred HH--HH-H-hcCCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 00 00 0 012247789999999999999999999999988775 33344445445555 99999975
No 36
>PRK06724 hypothetical protein; Provisional
Probab=99.78 E-value=1.7e-17 Score=113.14 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=74.7
Q ss_pred CceeeeEEEEEeCChHHHHHHHHHhc---CCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEec
Q 030857 10 NKRFPHFTMFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 86 (170)
Q Consensus 10 ~~~~l~hv~i~v~d~~~s~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 86 (170)
+..+++|++|.|+|+++|++||+++| |++...... +.. +...+.+..
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~~~--------------------g~~~l~l~~- 53 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------YST--------------------GESEIYFKE- 53 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------eeC--------------------CCeeEEEec-
Confidence 44589999999999999999999976 555432111 100 011232211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEEEEe---CCHHHHHHHHHhcCCeEeecCCCC---ccc-eEEEEECCCCCEEEEEe
Q 030857 87 WGTESDPDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDGG---KLK-GVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~g~~hl~f~v---~di~~~~~~l~~~G~~~~~~~~~~---~~~-~~~~~~DPdG~~iel~~ 159 (170)
.... .. ...+..|+||.| +++++++++|+++|+++...|... ..+ +.+||+|||||.|||..
T Consensus 54 ~~~~-------~~----~~~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~ 122 (128)
T PRK06724 54 VDEE-------IV----RTLGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAY 122 (128)
T ss_pred CCcc-------cc----CCCCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEe
Confidence 1110 00 012568999998 689999999999999987666431 123 57889999999999986
Q ss_pred cC
Q 030857 160 LK 161 (170)
Q Consensus 160 ~~ 161 (170)
..
T Consensus 123 ~~ 124 (128)
T PRK06724 123 TP 124 (128)
T ss_pred CC
Confidence 63
No 37
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.78 E-value=2.7e-17 Score=112.26 Aligned_cols=114 Identities=21% Similarity=0.356 Sum_probs=82.3
Q ss_pred eEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 030857 15 HFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 94 (170)
Q Consensus 15 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 94 (170)
+|++|.|+|++++++||+++||+++......+ .....+++..++. ...+.+... ..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~l~~~~~--~~---- 56 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED-----------------HHDLALFPG--PE---- 56 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC-----------------cceEEEEcC--CC----
Confidence 59999999999999999999999987664433 2234555554321 234555321 10
Q ss_pred CCCCCCCCCCCCCceEEEEEeCCHH---HHHHHHHhcCCeEeecCCCCc--cceEEEEECCCCCEEEEEecCc
Q 030857 95 FKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 95 ~~~~~~~~~~~~g~~hl~f~v~di~---~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iel~~~~~ 162 (170)
..++.|++|.|+|++ +++++++++|+++...+.... ..+.+||+|||||.|||.+...
T Consensus 57 ----------~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 57 ----------RPGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred ----------CCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 126789999999864 788999999999987664322 2357899999999999997654
No 38
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=2.5e-17 Score=110.57 Aligned_cols=118 Identities=23% Similarity=0.347 Sum_probs=82.0
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|+.|.|+|++++++||+++||++........ .+ ..+..+ ...+++........
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~--~~~~~~-------------------~~~~~l~~~~~~~~ 58 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GR--KALRFG-------------------SQKINLHPVGGEFE 58 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--Cc--eEEEeC-------------------CEEEEEecCCCccC
Confidence 36899999999999999999999999998763321 11 122221 23566644222110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCC-HHHHHHHHHhcCCeEeecCCC--C--ccceEEEEECCCCCEEEEEe
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDD-VYKACERFERLGVEFAKKPDG--G--KLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~d-i~~~~~~l~~~G~~~~~~~~~--~--~~~~~~~~~DPdG~~iel~~ 159 (170)
+. ......+..|++|.+++ +++++++++++|+++...|.. + ..++.+||+|||||+||+.+
T Consensus 59 -~~------~~~~~~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 59 -PA------AGSPGPGSDDLCLITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred -cC------ccCCCCCCceEEEEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 00 01122367899999975 999999999999998866532 1 12457899999999999986
No 39
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.77 E-value=1.5e-17 Score=111.84 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=78.0
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|+.|.|+|++++.+||+++|||++..+.. . ..++...+.. ....+.+... .
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~---------------~~~~~~l~~~--~-- 59 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDY---------------EHHSLKLTES--P-- 59 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCC---------------CccEEEEeeC--C--
Confidence 489999999999999999999999999877532 1 2333321100 0234444211 1
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
..+..|++|.|+ ++++++++++++|+++...+.....+..+||+|||||.|||.-.
T Consensus 60 -------------~~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 60 -------------EAGLGHIAWRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred -------------CCceEEEEEEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEe
Confidence 126789999997 58899999999999875433222334578999999999999853
No 40
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.77 E-value=3.2e-17 Score=116.52 Aligned_cols=118 Identities=17% Similarity=0.261 Sum_probs=80.6
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|++|.|+|++++++||+++|||++..............|+..... ...+.+. ....
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~l~--~~~~- 64 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK-----------------VHDVAYT--RDPA- 64 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC-----------------ceeEEEe--cCCC-
Confidence 4799999999999999999999999998766433322222344433210 1223331 1110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCcc--ceEEEEECCCCCEEEEEec
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~ 160 (170)
....++.|+||.|+| +++++++|+++|+++...|..... ..++|++|||||+|||++.
T Consensus 65 -----------~~~~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 65 -----------GARGRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred -----------CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 011257899999985 557889999999998765533222 2368899999999999987
No 41
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=4.6e-17 Score=110.29 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=83.6
Q ss_pred eeeEEEEEeCChHHHHHHHHHhc---CCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 89 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~ 89 (170)
+++|+.|.|+|++++.+||+++| ||++..... . . ..|.... ++..+++......
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~--~~~~~~~------------------~~~~i~l~~~~~~ 57 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-G--RSWRAGD------------------GGTYLVLQQADGE 57 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-C--ceEEecC------------------CceEEEEEecccC
Confidence 57999999999999999999999 999987642 1 1 1122111 1457777654322
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCC----CccceEEEEECCCCCEEEEEec
Q 030857 90 ESDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG----GKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~----~~~~~~~~~~DPdG~~iel~~~ 160 (170)
.. ..+ .....++.|++|.|+ |+++++++++++|+++...+.. ...++.+|++|||||+|||+.+
T Consensus 58 ~~-~~~------~~~~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 58 SA-GRH------DRRNPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred CC-ccc------ccCCcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 11 101 011236789999997 4899999999999999887643 2234588999999999999753
No 42
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.77 E-value=3.6e-17 Score=109.47 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred eEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 030857 15 HFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 94 (170)
Q Consensus 15 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 94 (170)
.++.|.|+|+++|++||+++|||++.... + . ...+..++ +...+.+...... ..+
T Consensus 3 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~---~-~--~~~~~~~~-----------------~~~~l~l~~~~~~-~~~- 57 (119)
T cd08359 3 LYPVIVTDDLAETADFYVRHFGFTVVFDS---D-W--YVSLRSPD-----------------GGVELAFMLPGHE-TVP- 57 (119)
T ss_pred ceeEEEECCHHHHHHHHHHhhCcEEEecc---C-c--EEEEecCC-----------------CceEEEEccCCCC-CCc-
Confidence 46889999999999999999999988652 1 1 22232211 0134444322111 000
Q ss_pred CCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEEe
Q 030857 95 FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 95 ~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~ 159 (170)
. .. .... ....|++|.|+|+++++++++++|+++..+|...+++ +.++++|||||+|||+|
T Consensus 58 ~--~~-~~~~-~~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 58 A--AQ-YQFQ-GQGLILNFEVDDVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred c--hh-cccC-CceEEEEEEECCHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 0 00 0111 1224999999999999999999999988777655544 68899999999999986
No 43
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.77 E-value=3.4e-17 Score=110.18 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=77.8
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
++.|++|.|+|+++|++||+++|||++..+. .. ...++..++. +..+.+.. .+.
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~---~~--~~~~~~~~~~-----------------~~~~~l~~--~~~-- 55 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRP---ED--GALYLRMDDR-----------------AWRIAVHP--GEA-- 55 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCC---CC--CeEEEEccCC-----------------ceEEEEEe--CCC--
Confidence 6899999999999999999999999986542 11 1233332211 23444421 110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCC----CCccceEEEEECCCCCEEEEEecC
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD----GGKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~----~~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
.++.|++|.++ |+++++++|+++|+++...+. ....++.+||+|||||.|||+...
T Consensus 56 -------------~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 56 -------------DDLAYAGWEVADEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred -------------CceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 15579999997 499999999999999986542 112235789999999999998643
No 44
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.76 E-value=6.4e-17 Score=107.28 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=76.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC
Q 030857 16 FTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 95 (170)
Q Consensus 16 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~ 95 (170)
+..|.|+|++++++||+++|||++... . .. ..++..... ....+.+......
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~---~--~~-~~~~~~~~~----------------~~~~~~~~~~~~~------ 54 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD---H--GW-IATFASPQN----------------MTVQVSLATEGGT------ 54 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc---C--Cc-eEEEeecCC----------------CCcEEEEecCCCC------
Confidence 457899999999999999999998643 1 11 222222110 1234555321110
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEEec
Q 030857 96 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 96 ~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~ 160 (170)
.....|++|.|+|+++++++|+++|+++..++....++ +.+|+.|||||.|+|.++
T Consensus 55 ---------~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 55 ---------ATVVPDLSIEVDDVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred ---------CCCCCEEEEEeCCHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 01336999999999999999999999998877554444 578999999999999975
No 45
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.76 E-value=5.5e-17 Score=112.71 Aligned_cols=111 Identities=18% Similarity=0.315 Sum_probs=79.5
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|+.|.|+|++++++||+++|||++..... + ...|+..+.. ...+.+... .
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~-----------------~~~~~l~~~--~-- 56 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD-----------------HHSIAIARG--P-- 56 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC-----------------cceEEEccC--C--
Confidence 389999999999999999999999999865421 1 2344443221 234444211 1
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHH---HHHHhcCCeEeecCCC-Ccc-ceEEEEECCCCCEEEEEecC
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDG-GKL-KGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~---~~l~~~G~~~~~~~~~-~~~-~~~~~~~DPdG~~iel~~~~ 161 (170)
..++.|++|.|+|++++. ++|+++|+++...+.. +.. .+++||+||+||.|||++..
T Consensus 57 -------------~~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 57 -------------HPSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred -------------CCceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 025689999999877775 8999999998766532 222 34688999999999999864
No 46
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=1.5e-16 Score=106.62 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=82.3
Q ss_pred EEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 030857 17 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 96 (170)
Q Consensus 17 v~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 96 (170)
+.|.|+|++++.+||+++||+........++..+....+..+ +..+.+.... +. .. .
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~~-~~-~~-~- 61 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG-------------------DSVLMLADEF-PE-HG-S- 61 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC-------------------CEEEEEecCC-cc-cC-C-
Confidence 568999999999999999999998876544444444444432 2355554321 11 00 0
Q ss_pred CCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEEe
Q 030857 97 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 97 ~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~ 159 (170)
.. ....+..|++|.|+|++++++++.+.|+++..++...+++ +.++++|||||.|+|.+
T Consensus 62 ---~~-~~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 62 ---PA-SWGGTPVSLHLYVEDVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred ---CC-CCCCceEEEEEEeCCHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 00 0112457999999999999999999999998887544443 58899999999999976
No 47
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.76 E-value=9.9e-17 Score=109.64 Aligned_cols=119 Identities=24% Similarity=0.361 Sum_probs=82.9
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+++|+.|.|+|++++++||+++||+++...... ....++..+.. ....+.+........
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~----------------~~~~l~l~~~~~~~~- 59 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPD----------------EHHQIALITGRPAAP- 59 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCC----------------CceEEEEEecCCCCC-
Confidence 589999999999999999999999998765321 12334433200 134566654322210
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHH---HHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecCc
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~di~---~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
.....++.|++|.|+|++ ++++++.++|+++...+..+ .++.+|++|||||.|||+...+
T Consensus 60 ---------~~~~~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 60 ---------PPGPAGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDHG-NAWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred ---------CCCCCCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCCC-ceeEEEEECCCCCEEEEEEcCC
Confidence 011236789999998755 58899999999887655332 2467899999999999997654
No 48
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.76 E-value=3.4e-18 Score=115.05 Aligned_cols=121 Identities=28% Similarity=0.370 Sum_probs=80.3
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeec--CCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDF--PEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
+++|++|.|+|++++++||+++|||++...... ........++..+ ...+++.....+.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~ 61 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG-------------------EGHIELFLNPSPP 61 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST-------------------SSCEEEEEEESSS
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc-------------------ccceeeeeecccc
Confidence 689999999999999999999999999998652 2223344444432 3456665543332
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccc--eEEEEECCCCCEEEE
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK--GVAFIKDPDDYWIEI 157 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~DPdG~~iel 157 (170)
......... . .+..|+++.+. |+++++++|++.|+++...+.....+ ..+|++|||||.|||
T Consensus 62 ~~~~~~~~~-~----~~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 62 PRASGHSFP-E----HGGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp SSSEEEHHH-S----HTSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred ccccccccc-c----ccceeEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 211100000 0 02346666665 78889999999999999877432222 235799999999997
No 49
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=9.3e-17 Score=107.69 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=80.6
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 93 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 93 (170)
+.|+.|.|.|++++++||+++|||++..+ ++.. .+++..++ ...+.++.........
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~------------------~~~~~l~~~~~~~~~~ 57 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGG------------------RGMLLLFDPGATSTPG 57 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCC------------------CcEEEEEecCCccccc
Confidence 46899999999999999999999999874 1222 23343322 2344444322111000
Q ss_pred CCCCCCCCCCCCCCceEEEEEe--CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 94 DFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 94 ~~~~~~~~~~~~~g~~hl~f~v--~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
.. .. .....+..|++|.+ +|++++++++.++|+++...+.....++.+|++|||||+|||+++
T Consensus 58 ~~--~~--~~~~~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 58 GE--IP--PHGGSGPGHFAFAIPAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CC--CC--CCCCCCccEEEEEcCHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 00 00 01123678999999 489999999999999887655433345679999999999999864
No 50
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.75 E-value=5.9e-17 Score=107.90 Aligned_cols=110 Identities=25% Similarity=0.397 Sum_probs=81.0
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
++++|+.|.|+|++++++||+++||+++..... ...++..+.. +...+.+... +.
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~----------------~~~~~~~~~~--~~- 55 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSED----------------DHHSLVLTEG--DE- 55 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCC----------------CcEEEEEEeC--CC-
Confidence 479999999999999999999999999987631 1234443210 1234444321 10
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCc-cceEEEEECCCCCEEEEEec
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iel~~~ 160 (170)
.+..|++|.|+ ++++++++++++|+++...+...+ .++.+|++||+||.||++..
T Consensus 56 --------------~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 56 --------------PGVDALGFEVASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred --------------CCceeEEEEcCCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 15689999997 689999999999999988764333 34678999999999999854
No 51
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=3.5e-17 Score=110.56 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=78.0
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 93 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 93 (170)
+.+++|.|+|+++|++||++ |||+......... . ..+.. ++ ...+.+........
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~-~~~~~-~~------------------~~~l~l~~~~~~~~-- 55 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--A-ACMVI-SD------------------NIFVMLLTEDFFQT-- 55 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--e-EEEEE-CC------------------ceEEEEEcHHHHhh--
Confidence 36899999999999999976 8999875432221 1 11111 11 23555543211000
Q ss_pred CCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEe
Q 030857 94 DFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 94 ~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 159 (170)
+...........+..|++|.|+ ++++++++++++|+++..+|...++++.+||+|||||+|||+.
T Consensus 56 -~~~~~~~~~~~~~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 56 -FTPKPIADTKKSTEVLISLSADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred -ccCCCcccCCCCCeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 0000000011224569999998 5889999999999999887766555567899999999999974
No 52
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=7.4e-17 Score=109.22 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=77.9
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.++.|+.|.|+|+++|.+||+++|||++..+. + ...+++.+.. +..+.+... .
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~---~---~~~~l~~~~~-----------------~~~i~l~~~--~-- 57 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERT---A---KATYFRSDAR-----------------DHTLVYIEG--D-- 57 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCC---C---CeEEEEcCCc-----------------cEEEEEEeC--C--
Confidence 47999999999999999999999999986542 1 1234443211 233444211 1
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCC----CccceEEEEECCCCCEEEEEecC
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG----GKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~----~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
.+..|++|.|+| +++++++++++|+++...+.. ...++.+||+|||||.||+....
T Consensus 58 --------------~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 58 --------------PAEQASGFELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred --------------CceEEEEEEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 134799999985 999999999999998765421 11234678999999999998653
No 53
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.75 E-value=3.4e-17 Score=110.26 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=79.7
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+++|+.|.|+|++++.+||+++||+++..... + ..++..+ +..+.+.......
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~-------------------~~~~~l~~~~~~~-- 53 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAG-------------------DLWLCLSVDANVG-- 53 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecC-------------------CEEEEEecCCCCC--
Confidence 47899999999999999999999999876532 1 1222221 1233332211110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEe--CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecCccccc
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGKI 166 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v--~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 166 (170)
...+..|++|.+ +|+++++++++++|+++...+... ++.+||+|||||.|||.+..-...+
T Consensus 54 -----------~~~~~~hi~f~v~~~dl~~~~~~l~~~G~~~~~~~~~~--~~~~~f~DPdG~~ie~~~~~~~~~~ 116 (121)
T cd07244 54 -----------PAKDYTHYAFSVSEEDFASLKEKLRQAGVKEWKENTSE--GDSFYFLDPDGHKLELHVGSLASRL 116 (121)
T ss_pred -----------CCCCeeeEEEEeCHHHHHHHHHHHHHcCCcccCCCCCC--ccEEEEECCCCCEEEEEeCCHHHHH
Confidence 012567999999 479999999999999887655332 3568999999999999987644433
No 54
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.74 E-value=1.4e-16 Score=106.10 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=75.7
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|+.|.|+|+++|++||++ |||++..+. +. ..++..++. ...+.+.. ...
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~---~~---~~~~~~~~~-----------------~~~~~~~~-~~~-- 54 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAART---DD---ELYYRGYGT-----------------DPFVYVAR-KGE-- 54 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEec---CC---eEEEecCCC-----------------ccEEEEcc-cCC--
Confidence 3789999999999999999999 999986552 11 223332110 11222211 110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
..++.|++|.|+|.+++.+.+++.|+.....+.....++.+||+|||||.|||+--
T Consensus 55 -------------~~~~~~~af~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 55 -------------KARFVGAAFEAASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred -------------cCcccEEEEEECCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEec
Confidence 12567999999999999999999999877544311224578999999999999743
No 55
>PLN02300 lactoylglutathione lyase
Probab=99.74 E-value=2.2e-16 Score=121.38 Aligned_cols=128 Identities=30% Similarity=0.514 Sum_probs=94.1
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
-++.|+.|.|+|++++.+||+++||+++......++..+...++..+... ....+++....+...
T Consensus 153 ~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lel~~~~~~~~ 217 (286)
T PLN02300 153 EPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPED---------------KTTVLELTYNYGVTE 217 (286)
T ss_pred CcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCC---------------CccEEEEeecCCCCc
Confidence 37899999999999999999999999998754444445666665532210 123566654322211
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCcc--ceEEEEECCCCCEEEEEecCccc
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKTIG 164 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~~~~ 164 (170)
+..+ .+++|++|.|+|+++++++++++|+++..+|...+. ++.++|+||||+.|+|++...+-
T Consensus 218 ------~~~g----~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~ 282 (286)
T PLN02300 218 ------YTKG----NAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFL 282 (286)
T ss_pred ------cccC----CceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhh
Confidence 1112 367899999999999999999999999987754332 35788999999999999987643
No 56
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.73 E-value=2e-16 Score=122.34 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=79.4
Q ss_pred ceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcce-EEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCC
Q 030857 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 89 (170)
Q Consensus 11 ~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~ 89 (170)
..+++||+|.|+|++++++||+++|||++..+...+.... ...|+..+.. ...+.+... +
T Consensus 143 ~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~--~ 203 (303)
T TIGR03211 143 ARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-----------------AHDIAFVGD--P 203 (303)
T ss_pred ceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-----------------CcccceecC--C
Confidence 3579999999999999999999999999876543332221 2334432110 111222110 0
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCc--cceEEEEECCCCCEEEEEe
Q 030857 90 ESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iel~~ 159 (170)
..+.++|+||.|+| +++++++|+++|+++...|.... .++++||+|||||+|||..
T Consensus 204 --------------~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 204 --------------EPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred --------------CCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 01237899999996 55578899999999887664322 2458999999999999983
No 57
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.73 E-value=2e-16 Score=105.94 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=77.4
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+++|+.|.|+|++++++||+++|||+...... . ..++..... ....+.+. ...
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~~----------------~~~~~~~~---~~~-- 55 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATGS----------------EHHILRLR---RSD-- 55 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCCC----------------ccEEEEec---cCC--
Confidence 78999999999999999999999999875421 1 223332110 01223331 110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEe---CCHHHHHHHHHhcCCeEeecCC--CCc-cceEEEEECCCCCEEEEEecC
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPD--GGK-LKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v---~di~~~~~~l~~~G~~~~~~~~--~~~-~~~~~~~~DPdG~~iel~~~~ 161 (170)
..++.|++|.| +++++++++++++|+++...+. ..+ .++.++|+||+||.|||+...
T Consensus 56 ------------~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 56 ------------RNRLDVVSFSVASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred ------------CCCCceEEEEeCCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 01457999999 4799999999999999876552 222 245789999999999998753
No 58
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.73 E-value=1.1e-16 Score=106.06 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=74.5
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC
Q 030857 16 FTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 95 (170)
Q Consensus 16 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~ 95 (170)
|+.|.|+|++++++||+++||+++..... . ..++..+ +..+.+...... .
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~-------------------~~~l~~~~~~~~-~---- 50 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELA-------------------GLWICLMEEDSL-Q---- 50 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEec-------------------CeEEEeccCCCc-C----
Confidence 89999999999999999999999876531 1 1222221 223444221110 0
Q ss_pred CCCCCCCCCCCCceEEEEEeC--CHHHHHHHHHhcCCeEeecCC-CCccceEEEEECCCCCEEEEEe
Q 030857 96 KGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 96 ~~~~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iel~~ 159 (170)
....+..|++|.|+ |+++++++++++|+++...+. ....++.+|++|||||+|||+.
T Consensus 51 -------~~~~~~~hiaf~v~~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 51 -------GPERTYTHIAFQIQSEEFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred -------CCCCCccEEEEEcCHHHHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 01125689999995 799999999999999875432 2234567899999999999984
No 59
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.73 E-value=1e-16 Score=105.34 Aligned_cols=107 Identities=25% Similarity=0.389 Sum_probs=72.6
Q ss_pred EEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 030857 19 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 98 (170)
Q Consensus 19 i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 98 (170)
|.|+|++++++||+++|||++..... .+.....+... ......+.......
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~-----------------~~~~~~~~~~~~~~-------- 51 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFRF-----------------HDGVIEFLQFPDPP-------- 51 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEEE-----------------EEEEEEEEEEESSS--------
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccch-----------------hhhhHHHccCCccc--------
Confidence 68999999999999999999999432 12122111100 01123333221111
Q ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEE
Q 030857 99 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 158 (170)
Q Consensus 99 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~ 158 (170)
....+..|++|.|+|+++++++++++|+++...|....++ +.+++.|||||+|||+
T Consensus 52 ----~~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 52 ----GPPGGGFHLCFEVEDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp ----SSSSSEEEEEEEESHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred ----cCCCceeEEEEEEcCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 1123668999999999999999999999998877554444 6899999999999985
No 60
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.72 E-value=1.8e-16 Score=106.54 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=73.8
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC-C
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES-D 92 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-~ 92 (170)
++|++|.|+|+++|++||++ |||++...... . ..+.+..++ +..+.+........ .
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~-~---~~~~~~~~~------------------~~~l~l~~~~~~~~~~ 57 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD-E---PHVEAVLPG------------------GVRLAWDTVESIRSFT 57 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC-C---CcEEEEeCC------------------CEEEEEEcccceeeec
Confidence 58999999999999999975 99998644221 0 111122111 12333321100000 0
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEE
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 158 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~ 158 (170)
+. . .....+..|++|.++ |+++++++++++|+++...|...+++ +.++|+|||||+|||.
T Consensus 58 ~~---~---~~~~~~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 58 PG---W---TPTGGHRIALAFLCETPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CC---C---CCCCCCcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 00 0 001123468888875 89999999999999988777655555 5789999999999986
No 61
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.72 E-value=6.1e-16 Score=102.10 Aligned_cols=108 Identities=23% Similarity=0.293 Sum_probs=76.7
Q ss_pred EEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 030857 18 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 97 (170)
Q Consensus 18 ~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 97 (170)
.|.|+|++++++||+++||+++..... ... ..+++.+ +..+.+........
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~--~~~~~~~-------------------~~~~~l~~~~~~~~------ 53 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPG--YAFLSRG-------------------GAQLMLSEHDGDEP------ 53 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCc--EEEEEeC-------------------CEEEEEeccCCCCC------
Confidence 689999999999999999999887642 122 2333321 35666654322211
Q ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCe-EeecCCCCccc-eEEEEECCCCCEEEEEe
Q 030857 98 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVE-FAKKPDGGKLK-GVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 98 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~-~~~~~~~~~~~-~~~~~~DPdG~~iel~~ 159 (170)
. ...+..|++|.++|++++++++.++|++ +..++....++ +.+|++||+|+.|||+|
T Consensus 54 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 54 V-----PLGRGGSVYIEVEDVDALYAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred C-----CCCCcEEEEEEeCCHHHHHHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 0 1124569999999999999999999998 55555443333 67899999999999976
No 62
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.72 E-value=2.6e-16 Score=105.69 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=77.1
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.++.|+.|.|+|++++++||+++||+++.... + . ..++...... ....+.+.. .+
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~~~~~~~~---------------~~~~~~~~~--~~-- 57 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEED---D-D--RIYLRGLEEF---------------IHHSLVLTK--AP-- 57 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccC---C-C--eEEEEecCCC---------------ceEEEEEee--CC--
Confidence 48999999999999999999999999987652 1 1 2223211100 012333321 11
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCC-CCcc-ceEEEEECCCCCEEEEEec
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD-GGKL-KGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~-~~~~-~~~~~~~DPdG~~iel~~~ 160 (170)
..+..|++|.|. |+++++++++++|+++...|. ..+. ++.+|+.|||||.|||+..
T Consensus 58 -------------~~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 58 -------------VAGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred -------------CCceeEEEEECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 025689999994 799999999999999876532 2222 3578999999999999854
No 63
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=3.5e-16 Score=103.95 Aligned_cols=109 Identities=21% Similarity=0.341 Sum_probs=76.8
Q ss_pred EEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 030857 17 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 96 (170)
Q Consensus 17 v~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 96 (170)
+.|.|+|+++|++||+++||+++.... ..+. .+...+ +..+.+........
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~--~~~~~~------------------~~~~~l~~~~~~~~----- 52 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFA--LFVLGS------------------GVKLGLWSRHTVEP----- 52 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceE--EEEeCC------------------CcEEEEeeccccCC-----
Confidence 578999999999999999999987642 1222 122111 24566643322110
Q ss_pred CCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEE
Q 030857 97 GYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 158 (170)
Q Consensus 97 ~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 158 (170)
.. ....+..|++|.|++ ++++++++.++|+++...|....+++.++|+|||||.|||.
T Consensus 53 -~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 53 -AS---DATGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVF 113 (114)
T ss_pred -CC---CCCCCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEee
Confidence 00 011255799999985 88999999999999988876656667789999999999986
No 64
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=6.9e-16 Score=103.88 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=76.6
Q ss_pred eeEEEEEeCChHHHHHHHHHh---cCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRV---LGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
++|++|.|+|+++|++||+++ ||++...+. ...+ ..+ ..++ +...+.+.......
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~~~-~~~-~~~~-----------------~~~~~~l~~~~~~~ 58 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GPGA-VGY-GKGG-----------------GGPDFWVTKPFDGE 58 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CCce-eEe-ccCC-----------------CCceEEEeccccCC
Confidence 579999999999999999999 588887653 1122 222 2111 13456665432111
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCC----ccceEEEEECCCCCEEEEE
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGG----KLKGVAFIKDPDDYWIEIF 158 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~----~~~~~~~~~DPdG~~iel~ 158 (170)
. ....+..|++|.|++ ++++++++.++|+.+...|... ...+.+||+|||||.|||+
T Consensus 59 ~-----------~~~~~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 59 P-----------ATAGNGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred C-----------CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 0 011234699999986 8889999999999988766432 2234689999999999996
No 65
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=5.8e-16 Score=107.21 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=77.3
Q ss_pred eEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 030857 15 HFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 94 (170)
Q Consensus 15 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 94 (170)
.||.|.|+|++++.+||+++|||++..+.. . ...|+...... ....+.+. +
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~--~---~~~~l~~~~~~---------------~~h~~~~~----~----- 51 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE--D---RIVFMRCHPNP---------------FHHTFAVG----P----- 51 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC--C---EEEEEEcCCCC---------------Ccceeeec----c-----
Confidence 489999999999999999999999887632 1 34555432110 01122110 1
Q ss_pred CCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCC--ccceEEEEECCCCCEEEEEecCc
Q 030857 95 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 95 ~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
....+++|++|.|+| +++++++|+++|+++...|... ...+.+||+||||+.|||.-...
T Consensus 52 --------~~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 52 --------ASSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred --------CCCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 011378999999986 5577999999999987666432 12356899999999999986543
No 66
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.71 E-value=6.7e-16 Score=103.73 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=74.3
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC
Q 030857 16 FTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 95 (170)
Q Consensus 16 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~ 95 (170)
...|.|+|+++|++||++ |||++..+... .+ .++..+ +..++|.......+
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~--~~~~~~-------------------~~~l~l~~~~~~~~---- 55 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---GY--MILRRG-------------------DLELHFFAHPDLDP---- 55 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---CE--EEEEcC-------------------CEEEEEEecCcCCC----
Confidence 467999999999999999 99999765321 22 223321 34666654321100
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEe-------ecCCCCcc-ceEEEEECCCCCEEEEEec
Q 030857 96 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA-------KKPDGGKL-KGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 96 ~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~-------~~~~~~~~-~~~~~~~DPdG~~iel~~~ 160 (170)
. ....|++|.|+|+++++++|+++|+++. ..+....+ .+.++|+|||||.|||.|.
T Consensus 56 -----~----~~~~~~~~~v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 56 -----A----TSPFGCCLRLPDVAALHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred -----C----CCcceEEEEeCCHHHHHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 0 1225899999999999999999999853 23332223 4579999999999999874
No 67
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=6e-16 Score=102.78 Aligned_cols=106 Identities=19% Similarity=0.279 Sum_probs=71.0
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+++|++|.|.|++++++||+ +|||++..+. + . ..+...+. +...+.+... ..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~-~--~~~~~~~~-----------------~~~~~~~~~~--~~-- 53 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D-G--LELRTAGN-----------------DHRWARLLEG--AR-- 53 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C-c--eEEEecCC-----------------CceEEEeecC--CC--
Confidence 68999999999999999997 6999997542 1 1 11222111 0122333211 10
Q ss_pred CCCCCCCCCCCCCCCceE--EEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 93 PDFKGYHNGNSEPRGFGH--IGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~h--l~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
.+..| +.+.++|+++++++++++|+++...+... ..+.+||.|||||.|||..-
T Consensus 54 -------------~~~~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~~~~-~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 54 -------------KRLAYLSFGIFEDDFAAFARHLEAAGVALAAAPPGA-DPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred -------------CceeeEEEEeEhhhHHHHHHHHHHcCCceecCCCcC-CCCEEEEECCCCCEEEEecC
Confidence 02234 45556899999999999999987665222 23468999999999999843
No 68
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.70 E-value=9.2e-16 Score=118.10 Aligned_cols=119 Identities=23% Similarity=0.335 Sum_probs=80.3
Q ss_pred CCceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccC
Q 030857 9 CNKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWG 88 (170)
Q Consensus 9 ~~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~ 88 (170)
....+++|++|.|+|+++|++||+++|||++..........+...++..... ...+.+.. .
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~--~ 192 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG-----------------VHDIALTN--G 192 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC-----------------cCceEeec--C
Confidence 3457899999999999999999999999998765433333333344432110 12233210 0
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCe--EeecCCC-Cc-cceEEEEECCCCCEEEEEecC
Q 030857 89 TESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVE--FAKKPDG-GK-LKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~--~~~~~~~-~~-~~~~~~~~DPdG~~iel~~~~ 161 (170)
. ..+++|+||.|+| +++++++|+++|++ +...|.. +. ...++|++||+||+|||....
T Consensus 193 ~---------------~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 193 N---------------GPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred C---------------CCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 0 1267899999998 55568999999987 4444422 11 234689999999999998754
No 69
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=6.7e-16 Score=103.92 Aligned_cols=116 Identities=21% Similarity=0.307 Sum_probs=71.5
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC
Q 030857 16 FTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 95 (170)
Q Consensus 16 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~ 95 (170)
|++|.|+|+++|++||+++||+++..... .+ ..+... +..+.+...........
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~-------------------~~~~~l~~~~~~~~~~~- 55 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFF-------------------GHQLVAHLSPNFNADAS- 55 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--cccccc-------------------CcEEEEEeccCCCcccc-
Confidence 89999999999999999999999865421 11 111111 12222221111100000
Q ss_pred CCCCCCCCCCCCceEEE--EEeCCHHHHHHHHHhcCCeEeecCCC---C--ccceEEEEECCCCCEEEEEe
Q 030857 96 KGYHNGNSEPRGFGHIG--ITVDDVYKACERFERLGVEFAKKPDG---G--KLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 96 ~~~~~~~~~~~g~~hl~--f~v~di~~~~~~l~~~G~~~~~~~~~---~--~~~~~~~~~DPdG~~iel~~ 159 (170)
.........+..|++ |.++|+++++++|+++|+++..+|.. + ...+.+||+|||||.|||..
T Consensus 56 --~~~~~~~~~~~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 56 --DNAVDGHPVPVPHFGLILSEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred --cCCCCCCccCCceEEEEEeHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 000001111345665 56689999999999999999876532 1 11367999999999999964
No 70
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=1.8e-15 Score=101.48 Aligned_cols=109 Identities=27% Similarity=0.405 Sum_probs=75.4
Q ss_pred eEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 030857 15 HFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 94 (170)
Q Consensus 15 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 94 (170)
.|+.|.|+|++++.+||+++||++...+.. .. ..|... . ....+.+.. ....
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~-~~~~~~-~-----------------~~~~~~~~~--~~~~--- 54 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DY-AKFLLE-D-----------------PRLNFVLNE--RPGA--- 54 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----Ce-eEEEec-C-----------------CceEEEEec--CCCC---
Confidence 599999999999999999999998866521 11 122211 1 022233321 1100
Q ss_pred CCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCc---cceEEEEECCCCCEEEEEec
Q 030857 95 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGK---LKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 95 ~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~---~~~~~~~~DPdG~~iel~~~ 160 (170)
...+..|++|.|++ ++++++++.++|+++...+.... ..+.+|++|||||.|||+..
T Consensus 55 ---------~~~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 55 ---------PGGGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred ---------CCCCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 00266899999987 88899999999999887653321 13579999999999999874
No 71
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.69 E-value=1.3e-15 Score=99.35 Aligned_cols=111 Identities=29% Similarity=0.372 Sum_probs=81.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC
Q 030857 16 FTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 95 (170)
Q Consensus 16 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~ 95 (170)
|+.|.|+|++++.+||+++||++........ ....+++..+ +..+++....+...
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~--~~~~~~~~~~-------------------~~~i~l~~~~~~~~---- 55 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNG--GAEFAVLGLG-------------------GTRLELFEGDEPAP---- 55 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccC--CEEEEEEecC-------------------CceEEEecCCCCCC----
Confidence 7899999999999999999999998875421 1233444432 35777765433211
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCC-CCccceEEEEECCCCCEEEE
Q 030857 96 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEI 157 (170)
Q Consensus 96 ~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iel 157 (170)
. ....+..|++|.|+|++++++++.++|+.+...+. .....+.+|+.||+|+.|||
T Consensus 56 --~----~~~~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 56 --A----PSGGGGVHLAFEVDDVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred --c----ccCCCeeEEEEECCCHHHHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 0 11236689999999999999999999998887764 23335689999999999986
No 72
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=3e-15 Score=99.70 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=70.3
Q ss_pred EEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 030857 17 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 96 (170)
Q Consensus 17 v~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 96 (170)
..|.|+|+++|++||++ |||++.... + . .+++..+ +..+.+...... .
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~---~-~--~~~l~~~-------------------~~~l~l~~~~~~-~----- 52 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN---D-N--LAYFRLG-------------------NCAFYLQDYYVK-D----- 52 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC---C-C--EEEEEcC-------------------CEEEEeecCCCc-c-----
Confidence 56889999999999988 999998763 1 2 2334322 234444221111 0
Q ss_pred CCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEee-----cCCC-CccceEEEEECCCCCEEEEEe
Q 030857 97 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAK-----KPDG-GKLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 97 ~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~-----~~~~-~~~~~~~~~~DPdG~~iel~~ 159 (170)
. ....+++|.|+|+++++++|+++|+++.. .+.. ..+.+.++|+|||||+|+|.+
T Consensus 53 -~-------~~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 53 -W-------AENSMLHLEVDDLEAYYEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred -c-------ccCCEEEEEECCHHHHHHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 0 12258999999999999999999987532 2222 233468999999999999864
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.65 E-value=5.4e-15 Score=113.55 Aligned_cols=115 Identities=20% Similarity=0.350 Sum_probs=78.5
Q ss_pred ceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCC--c-ceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEecc
Q 030857 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE--M-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 87 (170)
Q Consensus 11 ~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~ 87 (170)
..+++||+|.|+|++++.+||+++|||++........ + .+..+|+..+.. ...+.+...
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~-----------------~~~~~l~~~- 201 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER-----------------HHSLAFAAG- 201 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC-----------------cceEEEecC-
Confidence 3589999999999999999999999999876532211 1 123445543211 222333211
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHH---HHHHHHhcCCeEeecCCC-C-ccceEEEEECCCCCEEEEEe
Q 030857 88 GTESDPDFKGYHNGNSEPRGFGHIGITVDDVYK---ACERFERLGVEFAKKPDG-G-KLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~---~~~~l~~~G~~~~~~~~~-~-~~~~~~~~~DPdG~~iel~~ 159 (170)
+ ...+++|++|.|+|+++ ++++|+++|+ ....+.. + ....++|++||+|++||+..
T Consensus 202 -~--------------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 202 -P--------------SEKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred -C--------------CCCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 1 01267899999998777 7999999999 4444422 2 22457899999999999976
No 74
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=7.7e-15 Score=98.08 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=74.6
Q ss_pred EEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 030857 17 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 96 (170)
Q Consensus 17 v~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 96 (170)
|.|.|+|++++.+||+++|||++..+. ... ..++..+ +..+++...........
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~--~~~~~~~-------------------~~~~~l~~~~~~~~~~~-- 55 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDG--VAFFQLG-------------------GLVLALFPREELAKDAG-- 55 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCc--eEEEEcC-------------------CeEEEEecchhhhhhcC--
Confidence 689999999999999999999987651 112 2233321 34566653211100000
Q ss_pred CCCCCCCCCCCceEEEEEe---CCHHHHHHHHHhcCCeEeecCCCCcc-ceEEEEECCCCCEEEEEe
Q 030857 97 GYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 97 ~~~~~~~~~~g~~hl~f~v---~di~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iel~~ 159 (170)
.... ....+..|++|.+ +|++++++++++.|+++..++...++ ++.+|++||+||+|||..
T Consensus 56 -~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 56 -VPVP-PPGFSGITLAHNVRSEEEVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred -CCCC-CCCccceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 0000 0111334566665 58999999999999999877654444 567899999999999974
No 75
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.65 E-value=6.5e-15 Score=113.92 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=80.1
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|++|.|+|++++++||+++|||++..+.. . ..++..... .....+.+... .
T Consensus 3 ~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~---~---~~~~~~~~~---------------~~~~~~~l~~~--~-- 57 (303)
T TIGR03211 3 MRLGHVELRVLDLEESLKHYTDVLGLEETGRDG---Q---RVYLKAWDE---------------WDHYSVILTEA--D-- 57 (303)
T ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC---c---eEEEEeccc---------------cccceEeeccC--C--
Confidence 479999999999999999999999999876532 1 122221100 00223333210 0
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCC--CCccceEEEEECCCCCEEEEEecCc
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD--GGKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~--~~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
..++.|++|.|+ |+++++++|+++|+++...+. ....++.+||+|||||.|||.+...
T Consensus 58 -------------~~g~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 58 -------------TAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred -------------CCceeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 126789999998 799999999999999876553 2223467899999999999998543
No 76
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.64 E-value=1.7e-15 Score=100.27 Aligned_cols=97 Identities=26% Similarity=0.341 Sum_probs=74.8
Q ss_pred eEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 030857 15 HFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 94 (170)
Q Consensus 15 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 94 (170)
+||+|.|+|++++++||+++||++.......+..++...++..++. ...+||+.+..... .
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~iELi~p~~~~~--~ 61 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG-----------------PVQIELIQPLDGDS--P 61 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE-----------------TEEEEEEEESSTTC--H
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC-----------------cEEEEEEEeCCCCc--c
Confidence 6999999999999999999999998877665556666666655431 26899998755431 0
Q ss_pred CCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecC
Q 030857 95 FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 136 (170)
Q Consensus 95 ~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~ 136 (170)
+.. ...|++||||.|+|++++.++|+++|+++...+
T Consensus 62 ---~~~---~~~gi~Hia~~v~D~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 62 ---LDR---GGGGIHHIAFEVDDLDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp ---HHH---TSSEEEEEEEEESHHHHHHHHHHHTTECEEECE
T ss_pred ---ccc---CCCCEEEEEEEeCCHHHHHHHHHHCCCEEcccC
Confidence 111 234899999999999999999999999988654
No 77
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.63 E-value=1.4e-14 Score=111.61 Aligned_cols=111 Identities=24% Similarity=0.322 Sum_probs=78.8
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|+.|.|+|++++++||+++|||++..+.. . ..++...... ....+.+... +
T Consensus 3 ~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~--~~~~~~~~~~---------------~~~~l~l~~~--~-- 57 (294)
T TIGR02295 3 LRTGHVELRVTDLDKSREFYVDLLGFRETESDK----E--YIYLRGIEEF---------------QHHSLVLTKA--P-- 57 (294)
T ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----C--eEEEeccCcC---------------CceEEEeeeC--C--
Confidence 489999999999999999999999999876521 1 2223211100 0123333211 1
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecC
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
..++.|++|.|+ |+++++++|+++|+++...+..+ .++.+||+|||||.|||+...
T Consensus 58 -------------~~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~-~~~~~~~~DPdG~~iEl~~~~ 116 (294)
T TIGR02295 58 -------------SAALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDGG-QPEALRVEDPFGYPIEFYFEM 116 (294)
T ss_pred -------------CcCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCCC-CceEEEEECCCCCEEEEEEch
Confidence 015689999997 79999999999999987655322 246789999999999999743
No 78
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.60 E-value=8.3e-14 Score=93.43 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=84.3
Q ss_pred CceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCC
Q 030857 10 NKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 89 (170)
Q Consensus 10 ~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~ 89 (170)
++..+.|..|.|+|++++++||+++||++........+. ..+.+..+... . +..+.- ...
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~--~y~~f~~~~~~----~-----------gG~l~~---~~~ 65 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEM--RYAVFPADGAG----A-----------GGGLMA---RPG 65 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCc--eEEEEECCCcc----c-----------cceecc---CCc
Confidence 345789999999999999999999999999887443222 22222211100 0 111111 000
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCc-cceEEEEECCCCCEEEEEecC
Q 030857 90 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iel~~~~ 161 (170)
...+ .+...+.|.|+|+++..+|..++|.+++.++..-+ .++.+.+.||+||+|-|++..
T Consensus 66 --------~~p~----~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 66 --------SPPG----GGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred --------CCCC----CCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 0000 24468999999999999999999999999887655 677888999999999998753
No 79
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.60 E-value=3.2e-14 Score=109.30 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=77.8
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
.+++|++|.|+|+++|++||+++|||++..+.. + . ..|+..+.. +..+.+.. .+.
T Consensus 2 ~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~-~--~~~~~~~~~-----------------~~~~~l~~--~~~- 56 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N-D--ALYLRLDSR-----------------AHRIAVHP--GES- 56 (286)
T ss_pred ceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C-c--eEEEEcCCC-----------------ceEEEEEE--CCc-
Confidence 378999999999999999999999999765421 1 1 123333211 23343321 110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCC---C-CccceEEEEECCCCCEEEEEec
Q 030857 92 DPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPD---G-GKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~---~-~~~~~~~~~~DPdG~~iel~~~ 160 (170)
.++.|++|.|++ ++++.++|+++|+++...+. . ...++.++|+|||||.|||+..
T Consensus 57 --------------~~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 57 --------------DDLAYAGWEVADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred --------------CCeeeEeeeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence 145799999998 89999999999999876542 1 1224578999999999999864
No 80
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.53 E-value=1.5e-13 Score=99.76 Aligned_cols=106 Identities=20% Similarity=0.320 Sum_probs=72.2
Q ss_pred eeeEEEEEeC--ChHHHHHHHHHhcCCEEeEeeecCC--cceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccC
Q 030857 13 FPHFTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWG 88 (170)
Q Consensus 13 ~l~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~ 88 (170)
+++|+++.|. |++++++||+++|||+.......++ .......+..+. +...++|..+..
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~-----------------g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD-----------------GKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC-----------------CcEEEEEecCCC
Confidence 7899999999 9999999999999999988754332 223333343221 245777765433
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecC
Q 030857 89 TESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 136 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~ 136 (170)
+........+.. .....|++||||.|+|+++++++|+++|+++...|
T Consensus 66 ~~~~s~~~~fl~-~~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 66 GKRKSQIQEFLE-YYGGAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCCccHHHHHHH-HhCCCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 111110000100 01124889999999999999999999999998776
No 81
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.1e-13 Score=100.62 Aligned_cols=121 Identities=37% Similarity=0.634 Sum_probs=97.8
Q ss_pred CceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCC-----------cceEEEeeeccCCCCCCCCcccceeeecCCC
Q 030857 10 NKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKP 78 (170)
Q Consensus 10 ~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
...++-|+.+.|-|..+++.||+++|||++.+...+++ ..|.-.|++++... ..
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEd---------------sh 78 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPED---------------SH 78 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCc---------------cc
Confidence 34588999999999999999999999999999877776 67888888876532 27
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEE
Q 030857 79 ATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 158 (170)
Q Consensus 79 ~~lel~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 158 (170)
+.+||.++.+-.. +..|+ +|.|+++.++|+-...+++...|.+ +.....+++.||||+.++|+
T Consensus 79 FViELTYNYgV~~------YelGn----dfg~i~I~s~dv~~~ve~v~~p~~~-------~~g~~~~~v~dPdGykF~l~ 141 (299)
T KOG2943|consen 79 FVIELTYNYGVSK------YELGN----DFGGITIASDDVFSKVEKVNAPGGK-------GSGCGIAFVKDPDGYKFYLI 141 (299)
T ss_pred EEEEEEeccCccc------eeccC----CcccEEEeHHHHHHHHHHhcCcCCc-------ccceEEEEEECCCCcEEEEe
Confidence 8999999887754 77776 8999999999988888887766541 12233688999999999999
Q ss_pred ecCc
Q 030857 159 DLKT 162 (170)
Q Consensus 159 ~~~~ 162 (170)
++.+
T Consensus 142 ~~~p 145 (299)
T KOG2943|consen 142 DRGP 145 (299)
T ss_pred ccCC
Confidence 8654
No 82
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.50 E-value=1.2e-12 Score=97.26 Aligned_cols=121 Identities=17% Similarity=0.301 Sum_probs=84.8
Q ss_pred CCCCceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEec
Q 030857 7 TSCNKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 86 (170)
Q Consensus 7 ~~~~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 86 (170)
+.+..+.+..+.|.|+|++++..||+++||+++..+... .+.++.++ ...+.|.+.
T Consensus 4 ~~~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg------------------~~LL~L~q~ 59 (265)
T COG2514 4 ALTTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGG------------------TPLLTLEQF 59 (265)
T ss_pred ccCCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCC------------------EEEEEEEeC
Confidence 344556899999999999999999999999999987431 12222221 346666654
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecC
Q 030857 87 WGTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
......+ ....|+.|++|-+++ +..+..++.+.|+.+... .+....-.+||.||+||.||+.-.+
T Consensus 60 ~~a~~~~---------~~~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~Ga-~DH~vSEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 60 PDARRPP---------PRAAGLYHTAFLLPTREDLARVLNHLAEEGIPLVGA-SDHLVSEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred CCCCCCC---------ccccceeeeeeecCCHHHHHHHHHHHHhcCCccccc-CcchhheeeeecCCCCCeEEEEecC
Confidence 3332211 112388999999995 777788899999887622 2222334689999999999998654
No 83
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.33 E-value=3.4e-11 Score=95.19 Aligned_cols=107 Identities=15% Similarity=0.274 Sum_probs=70.0
Q ss_pred eeeeEEEEEeC--ChHHHHHHHHHhcCCEEeEeeecCC--cceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEecc
Q 030857 12 RFPHFTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 87 (170)
Q Consensus 12 ~~l~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~ 87 (170)
.+++|+++.|. |++++++||+++|||++..+..... ..+....+.. +.+...++|..+.
T Consensus 157 ~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~-----------------~~g~~~i~L~ep~ 219 (353)
T TIGR01263 157 IAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS-----------------PDGKVKIPLNEPA 219 (353)
T ss_pred EEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC-----------------CCCcEEEEEeccC
Confidence 46999999999 9999999999999999987654221 1111111111 1124577876532
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecC
Q 030857 88 GTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 136 (170)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~ 136 (170)
..........+.. .....|++||||.|+|+++++++|+++|+++...|
T Consensus 220 ~~~~~s~i~~fl~-~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 220 SGKDKSQIEEFLE-FYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred CCCCCCHHHHHHH-HcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 2111111000100 01124889999999999999999999999998766
No 84
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.31 E-value=1.9e-11 Score=81.85 Aligned_cols=130 Identities=25% Similarity=0.306 Sum_probs=75.0
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcc---eEEEeeeccCCCCCCCCcccceeeecCCC-cEEEEEeccC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK---FSLYFLGYEDTASAPADPVDRTVWTFGKP-ATIELTHNWG 88 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lel~~~~~ 88 (170)
+++|++|.|+|+++|++||+++||+++.......... ....+....... ... +...+. ...+......
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~ 73 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGP--GEL------LAFFGFEGRAGTGFVGD 73 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCc--ccc------eeecccccccccccccc
Confidence 6899999999999999999999999999875433211 111222111000 000 000000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEe
Q 030857 89 TESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 159 (170)
.. .....+ ..+..|+++.+++ +..........|..+..... ...+..+|++||||+.||+.+
T Consensus 74 ~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 74 VA-----LGVPGG---DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred eE-----EeecCc---hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcceEEEEECCCCcEEEeeC
Confidence 00 000000 0246799999998 67777777788888765543 333447999999999999974
No 85
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.28 E-value=1.2e-10 Score=75.63 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=77.9
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
.+-|++|.|+|++++++||.++||++.-++.+. -+..-+.+- +....+. +.++.+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~---wvdfDfyGH--------------------Q~v~Hl~--~q~~~~ 58 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTDT---WVDFDFYGH--------------------QVVAHLT--PQPDSQ 58 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccce---EEEeeeccc--------------------EEEEEec--CCcccc
Confidence 467999999999999999999999998776321 112222221 1223332 111111
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCC---Ccc--ceEEEEECCCCCEEEEEecCccc
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG---GKL--KGVAFIKDPDDYWIEIFDLKTIG 164 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~---~~~--~~~~~~~DPdG~~iel~~~~~~~ 164 (170)
....+ .+...+....-+.|.++|..++.++++++|+.+..+|.. |.- .+-+|+.||-||.+|+-.-+...
T Consensus 59 -~~g~V-~~~~v~~pHfGvVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~e 133 (138)
T COG3565 59 -GSGKV-DGHGVPPPHFGVVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQE 133 (138)
T ss_pred -cCccc-CCCCCCCccceEEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccchh
Confidence 11111 111112222356677889999999999999999877731 222 24578899999999986554433
No 86
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.25 E-value=9.9e-10 Score=74.93 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=84.8
Q ss_pred EEEEeC-ChHHHHHHHHHhcCCEEeEeeecCC----------cceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEe
Q 030857 17 TMFRIK-DPKVSLDFYSRVLGMSLLKRLDFPE----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 85 (170)
Q Consensus 17 v~i~v~-d~~~s~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~ 85 (170)
.-|.++ |.+++++||+++||.+...+....+ ..+..+-+..+ +..|.+..
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~-------------------g~~im~sd 64 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG-------------------GSTIMLSD 64 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC-------------------CEEEEEec
Confidence 457788 9999999999999999999887776 34555555543 34566643
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEEecC
Q 030857 86 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~~ 161 (170)
...... ...++ +.-..|.+.++|++++++++.+.|+++..++.+..++ +...++||.|+.|-|....
T Consensus 65 ~~~~~~------~~~~~---~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 65 AFPDMG------ATEGG---GTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred CCCccC------cccCC---CeeEEEEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCc
Confidence 322211 11111 1224778888899999999999999999888776665 4567999999999998654
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.24 E-value=3.4e-10 Score=89.55 Aligned_cols=124 Identities=20% Similarity=0.172 Sum_probs=78.1
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+++|+.|.|+|++++++||++.|||++.......... ....++. +...++|.....+..
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~-------------------G~~~l~L~~~~~~~s- 60 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQ-------------------GQINFVLTAPYSSDS- 60 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEe-------------------CCEEEEEecCCCCCc-
Confidence 6899999999999999999999999998763222222 1222222 245777764432211
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCC--ccceEEEEECCCCCEEEEEec
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iel~~~ 160 (170)
....+.. ....+..|+||.|+|++++++++.++|+++..+|... ..-...-++-++|..+-|+++
T Consensus 61 -~~~~~~~--~hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~ 127 (353)
T TIGR01263 61 -PAADFAA--KHGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR 127 (353)
T ss_pred -hHHHHHH--hCCCceEEEEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC
Confidence 0000100 1123789999999999999999999999998776432 111112234455555555553
No 88
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.24 E-value=1e-09 Score=74.53 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=71.1
Q ss_pred EEEEe-CChHHHHHHHHHhcCCEEeEeeecCC----------cceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEe
Q 030857 17 TMFRI-KDPKVSLDFYSRVLGMSLLKRLDFPE----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 85 (170)
Q Consensus 17 v~i~v-~d~~~s~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~ 85 (170)
..|.+ .|.+++++||+++||+++.......+ ..+....+..+ +..+.+..
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~-------------------g~~l~~~d 63 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG-------------------GQRLMASD 63 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC-------------------CEEEEEEc
Confidence 45677 89999999999999999998754321 11222333321 33555543
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEE
Q 030857 86 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEI 157 (170)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel 157 (170)
...... . ......++++.|+| +++++++|.+.| ++..++...+++ +..+++||+|+.|+|
T Consensus 64 ~~~~~~------~-----~~~~~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 64 GGPGFP------F-----TFGNGISLSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQI 127 (128)
T ss_pred CCCCCC------C-----CCCCCEEEEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEe
Confidence 211110 0 01133588999986 778889987766 777666554444 467899999999997
No 89
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.24 E-value=1e-10 Score=77.11 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=75.1
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+...|+|.|+|+++|.+||+. |||+......... ..+++-.+ ...+.|+....-
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~-------------------ni~vMLL~~~~f--- 56 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISD-------------------NIFVMLLEEARF--- 56 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEec-------------------cEEEEEeccHHh---
Confidence 567899999999999999966 8999987643222 22232221 223333321000
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecC
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
..+..-.........-.-+|+.+. +++++.++..++|.+...++.+...-+..-|.|||||.||++-..
T Consensus 57 q~F~~~~i~dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 57 QTFTKRQIADTTKSREVLISLSAGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred hhhcccccccccCCceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeC
Confidence 000000011111123357888886 599999999999999977775433222345699999999998654
No 90
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.23 E-value=1.2e-10 Score=92.52 Aligned_cols=132 Identities=15% Similarity=0.276 Sum_probs=85.6
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCc-----ceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEec
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-----KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 86 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 86 (170)
.+++|+++.|.+++.++.||+++|||+........+. ++....+..+ .+...++|..+
T Consensus 179 ~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp-----------------~g~v~ipLnEP 241 (398)
T PLN02875 179 RRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN-----------------NEMVLLPLNEP 241 (398)
T ss_pred ceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC-----------------CCcEEEEeccC
Confidence 4799999999999999999999999999876543221 1223333322 23467888665
Q ss_pred cCC-CCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhc----CCeEeecC-CC---------C----c-------
Q 030857 87 WGT-ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERL----GVEFAKKP-DG---------G----K------- 140 (170)
Q Consensus 87 ~~~-~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~----G~~~~~~~-~~---------~----~------- 140 (170)
... ...+....+.. .....|++||||.|+||.++.++|+++ |+++...| .. + .
T Consensus 242 ~~~~~~~SqI~eFL~-~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~ 320 (398)
T PLN02875 242 TFGTKRKSQIQTYLE-HNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECE 320 (398)
T ss_pred CCCCCCcChHHHHHH-hcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHH
Confidence 321 11111111211 122249999999999999999999999 99999854 10 1 0
Q ss_pred cceEEEEECCCCCEEEEEecC
Q 030857 141 LKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 141 ~~~~~~~~DPdG~~iel~~~~ 161 (170)
...+++-+|.+|.++.|+.+.
T Consensus 321 ~~~ILvD~d~~G~LLQIFTkp 341 (398)
T PLN02875 321 ELGILVDKDDQGVLLQIFTKP 341 (398)
T ss_pred HcCEEEecCCCceEEEEeccc
Confidence 012556667777777766653
No 91
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.2e-10 Score=84.94 Aligned_cols=121 Identities=26% Similarity=0.418 Sum_probs=89.7
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
.+..|.+.|.|+++|++||.+.|||++... +.......+++++. +..|||..+.+...
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~-----------------q~~LElt~~~~~id- 206 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE-----------------QCVLELTYNYDVID- 206 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc-----------------ceEEEEEeccCccc-
Confidence 678999999999999999999999999875 22346667777664 58999988766543
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC--CHHHHHHHHHhcCCeEeecC----CCCccc-eEEEEECCCCCEEEEEecCcccc
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKP----DGGKLK-GVAFIKDPDDYWIEIFDLKTIGK 165 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~----~~~~~~-~~~~~~DPdG~~iel~~~~~~~~ 165 (170)
. ..++..++|+++ ++..+.+.++..+..+..+. ..+... .++.+.||||+-|.++....+++
T Consensus 207 -----~------~kg~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~ 275 (299)
T KOG2943|consen 207 -----R------AKGFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRK 275 (299)
T ss_pred -----c------cccceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHH
Confidence 1 126678888775 68888888888866665443 333333 25668899999999998776665
Q ss_pred c
Q 030857 166 I 166 (170)
Q Consensus 166 ~ 166 (170)
+
T Consensus 276 l 276 (299)
T KOG2943|consen 276 L 276 (299)
T ss_pred H
Confidence 4
No 92
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.90 E-value=2.3e-08 Score=77.53 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=67.6
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 92 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 92 (170)
+..||+|.|+|+++|++||+++|++.. .. +.. ..++ ++ ..+-+..... .
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~-a~cm---~d-------------------tI~vMllt~~--D- 295 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDK-LFLL---GK-------------------TSLYLQQTKA--E- 295 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCc-cccc---cC-------------------cEEEEEecCC--C-
Confidence 567999999999999999999988874 22 111 1222 11 2222221111 1
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEe
Q 030857 93 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 93 ~~~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 159 (170)
.. ...-.-+|++++ +++++.+++.++|......+.+...+ --|.|||||+||++-
T Consensus 296 ~~----------~~~evLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf~--rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 296 KK----------NRGTTTLSLELECEHDFVRFLRRWEMLGGELGEQADGHFPL--RLVFDLDGHIWVVSC 353 (357)
T ss_pred CC----------CcceEEEEeccCCHHHHHHHHHHHHHcCCCCCCCcccccCc--ceeECCCCCEEEEEE
Confidence 10 013367899998 48999999999999765555443223 335899999999974
No 93
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.64 E-value=2.4e-07 Score=66.22 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=53.6
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 93 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 93 (170)
|+|+.+.|+|++++.++|++.|||++......+..+..-..+.++ ...|||+.........
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~-------------------~~YlEli~i~~~~~~~ 61 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG-------------------DGYLELIAIDPEAPAP 61 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S-------------------SSEEEEEEES-HHHST
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC-------------------CceEEEEEeCCccccc
Confidence 689999999999999999888999999876555433322222222 2399999853222211
Q ss_pred CCC-CCCCC-CCCCCCceEEEEEeCCHHHHHHHHHhcCCe
Q 030857 94 DFK-GYHNG-NSEPRGFGHIGITVDDVYKACERFERLGVE 131 (170)
Q Consensus 94 ~~~-~~~~~-~~~~~g~~hl~f~v~di~~~~~~l~~~G~~ 131 (170)
... .+... .....|+..+||.++|+++..+++++.|+.
T Consensus 62 ~~~~~~~~~~~~~~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 62 DRGRWFGLDRLAGGEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp GGGT-TTTHHHHT--EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred ccccceechhhcCCCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 000 01000 012348899999999999999999999986
No 94
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.58 E-value=1.3e-07 Score=72.89 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=69.1
Q ss_pred eeeeEEEEEeC--ChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCC
Q 030857 12 RFPHFTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 89 (170)
Q Consensus 12 ~~l~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~ 89 (170)
..++|++..|. .++....||+++|+|+.....+.++.. ....-+ ..--+.+...|-|-...+.
T Consensus 166 ~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~-tgl~Sr--------------am~Sp~G~vrlplN~s~~~ 230 (363)
T COG3185 166 TAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPI-TGLRSR--------------AMVSPCGKVRLPLNESADD 230 (363)
T ss_pred eeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCc-ccEEEe--------------eEecCCCcEEeecccCCCc
Confidence 47999998886 999999999999999999987665422 111111 0001122334444222111
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecC
Q 030857 90 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 136 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~ 136 (170)
.+... -........|++||+|.++||.++.+++++.|+++...|
T Consensus 231 --~sqi~-efl~~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 231 --KSQIG-EFLREYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred --hhHHH-HHHHHhCCCcceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 11000 001122345999999999999999999999999998866
No 95
>PRK10148 hypothetical protein; Provisional
Probab=98.48 E-value=2.9e-05 Score=54.00 Aligned_cols=51 Identities=10% Similarity=-0.083 Sum_probs=39.4
Q ss_pred eEEEEEeCCHHH---HHHHHHhcCCeEeecCCCCccc-eEEEEECCCCCEEEEEec
Q 030857 109 GHIGITVDDVYK---ACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 109 ~hl~f~v~di~~---~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~ 160 (170)
.++++.++|.++ ++++| +.|.++..++....++ +..-|+||.|+.|.|...
T Consensus 87 ~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 87 FTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred EEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 578888888776 55655 6888888887666665 457799999999999764
No 96
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.46 E-value=1.5e-05 Score=52.59 Aligned_cols=119 Identities=19% Similarity=0.295 Sum_probs=62.2
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 93 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~ 93 (170)
+.+..|.|.|-+..++||+++|||++..+.. .++.++... +...+.|-..+..-
T Consensus 1 f~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~-----------------~~erlvlEESP~~r--- 54 (125)
T PF14506_consen 1 FIIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQ-----------------KEERLVLEESPSMR--- 54 (125)
T ss_dssp -EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT-------------------EEEEEEE--TTT---
T ss_pred CcCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCC-----------------CceEEEEecCCccc---
Confidence 3567899999999999999999999998732 344554321 12344443332211
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecCcccc
Q 030857 94 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGK 165 (170)
Q Consensus 94 ~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 165 (170)
.+.+ .++.-+.++.+.|++-.++ +.|.+.|.++.. ...|..|+.+-..+|+|..|.|........
T Consensus 55 -tr~V----~G~KKl~~ivIkv~~~~EI-e~LLar~~~~~~-l~kg~~gyAfe~vSPEgd~~llhaEdd~~~ 119 (125)
T PF14506_consen 55 -TRAV----EGPKKLNRIVIKVPNPKEI-EALLARGAQYDR-LYKGKNGYAFEAVSPEGDRFLLHAEDDISD 119 (125)
T ss_dssp --B------SSS-SEEEEEEEESSHHHH-HHHHHC-S--SE-EEE-SSSEEEEEE-TT--EEEEE--S-GGG
T ss_pred -cccc----cCcceeeEEEEEcCCHHHH-HHHHhcccccce-eEEcCCceEEEEECCCCCEEEEEEcCCHhH
Confidence 0011 1234678999999874443 444555554322 222344555667799999999987665443
No 97
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.34 E-value=6.8e-06 Score=61.57 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=30.5
Q ss_pred CceeeeEEEEEeCChHHHHHHHHHhcCCEEeEe
Q 030857 10 NKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 10 ~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
.+..+.||.|.|.|++++.+||+++|||....+
T Consensus 165 ~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~ 197 (265)
T COG2514 165 AGTIIGHVHLKVADLEEAEQFYEDVLGLEVTAR 197 (265)
T ss_pred CCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeec
Confidence 345899999999999999999999999999887
No 98
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.32 E-value=3.5e-06 Score=64.27 Aligned_cols=104 Identities=13% Similarity=0.208 Sum_probs=65.6
Q ss_pred CceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCc--ceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEecc
Q 030857 10 NKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM--KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 87 (170)
Q Consensus 10 ~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~ 87 (170)
.-.++|||.+.|.|...+..||+..|||++........+ .+.-..++. +....-+....
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~-------------------g~~vFv~~s~~ 74 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQ-------------------GKIVFVFNSAY 74 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhc-------------------CCEEEEEecCC
Confidence 346899999999999999999999999999875322111 111111111 11222222222
Q ss_pred CCCCCCCCCC--CCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCC
Q 030857 88 GTESDPDFKG--YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 137 (170)
Q Consensus 88 ~~~~~~~~~~--~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~ 137 (170)
.+... .... ...|. +..-+||.|+|++++.+.+.++|+.+..+|.
T Consensus 75 ~p~~~-~~G~~l~~Hgd----gvkdvafeVeD~da~~~~~va~Ga~v~~~p~ 121 (381)
T KOG0638|consen 75 NPDNS-EYGDHLVKHGD----GVKDVAFEVEDADAIFQEAVANGAKVVRPPW 121 (381)
T ss_pred CCCch-hhhhhhhhccc----chhceEEEecchHHHHHHHHHcCCcccCCcc
Confidence 22110 0000 11222 5678999999999999999999999998874
No 99
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.24 E-value=3.5e-05 Score=61.74 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=77.7
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCC--cceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC-
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE- 90 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~- 90 (170)
++||.++|.|..++..||+..|||+......... .......++-+ ...+-+.....+.
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g-------------------~i~fv~~~~~~~~~ 61 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG-------------------DLVFLFTAPYSPKI 61 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC-------------------CEEEEEeCCCCCcc
Confidence 6899999999999999999999999987643211 11122222311 2233332221110
Q ss_pred -C-----CCC-CCC-CCCC------CCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCC-c---cc--eEEEEECC
Q 030857 91 -S-----DPD-FKG-YHNG------NSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-K---LK--GVAFIKDP 150 (170)
Q Consensus 91 -~-----~~~-~~~-~~~~------~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~-~---~~--~~~~~~DP 150 (170)
. .++ ..+ +..+ ..-+.+..-++|+|+|.+++++++.+.|.+....|... . .+ ...-++-+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~ 141 (398)
T PLN02875 62 GAGDDDPASTAPHPSFSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELY 141 (398)
T ss_pred ccccccccccccccccCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEcc
Confidence 0 000 000 0000 00113778999999999999999999999998876431 1 11 23346678
Q ss_pred CCCEEEEEecC
Q 030857 151 DDYWIEIFDLK 161 (170)
Q Consensus 151 dG~~iel~~~~ 161 (170)
+|..+-|+++.
T Consensus 142 G~~~h~lVdr~ 152 (398)
T PLN02875 142 GDVVLRYVSYK 152 (398)
T ss_pred CCcEEEEEccC
Confidence 88888888864
No 100
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.09 E-value=1.4e-05 Score=54.89 Aligned_cols=120 Identities=21% Similarity=0.253 Sum_probs=71.0
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 91 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 91 (170)
..+++|.+.|.|.+++.+|++ .|||+...+.... ...+ |-+ +...+-|-. .+..
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk--~v~l-~rQ--------------------G~I~~vln~--ep~s 61 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK--DVTL-YRQ--------------------GDINFVLNS--EPDS 61 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC--SEEE-EEE--------------------TTEEEEEEE--ESTS
T ss_pred CCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc--ceEE-EEe--------------------CCEEEEEeC--CCcc
Confidence 478999999999888888884 6999999875322 2222 222 122333322 2211
Q ss_pred CC-CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecCc
Q 030857 92 DP-DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 92 ~~-~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
.. ... ...|. +..-++|+|+|.+++++++.+.|.+....+.....-..--++-++|.++.|+++..
T Consensus 62 ~a~~~~-~~HG~----sv~aiafrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 62 FAAEFA-AQHGP----SVCAIAFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp CHHHHH-HHHSS----EEEEEEEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE--S
T ss_pred hHHHHH-HhcCC----EEEEEEEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEecCC
Confidence 00 000 11222 77899999999999999999999999877632211223457889999999998743
No 101
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.23 E-value=0.027 Score=37.53 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHhcCCEEeEe-eecCC------cceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 030857 22 KDPKVSLDFYSRVLGMSLLKR-LDFPE------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 94 (170)
Q Consensus 22 ~d~~~s~~FY~~~lG~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 94 (170)
.+.++|.+||.++||-..+.. ...++ ..+..+-+.. ++..+...... + .
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i-------------------~g~~lm~~D~~-~-~--- 66 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTI-------------------GGQKLMASDGG-P-D--- 66 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEE-------------------TTEEEEEEEES-T-S---
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEE-------------------CCeEEEEECCC-C-C---
Confidence 589999999999998533322 22221 1222333332 13445444332 1 1
Q ss_pred CCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEE
Q 030857 95 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 158 (170)
Q Consensus 95 ~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 158 (170)
+..+ .-..|++.++| ++.++++|.+.|- + ......+.|.-|..|.|+
T Consensus 67 ---~~~~-----~~~sl~i~~~~~ee~~~~f~~Ls~gG~-----~----~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 67 ---FPFG-----NNISLCIECDDEEEIDRIFDKLSEGGQ-----W----FSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp ------------TTEEEEEEESSHHHHHHHHHHHHTTTE-----T----CCEEEEEE-TTS-EEEEE
T ss_pred ---CCCC-----CcEEEEEEcCCHHHHHHHHHHHHcCCC-----c----cceeEEEEeCCCCEEEeC
Confidence 1111 22588888886 6666788888775 2 123467899999999885
No 102
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0003 Score=53.98 Aligned_cols=131 Identities=18% Similarity=0.312 Sum_probs=79.7
Q ss_pred eeeeEEEEEeC--ChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeec-CCCcEEEEEeccC
Q 030857 12 RFPHFTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTF-GKPATIELTHNWG 88 (170)
Q Consensus 12 ~~l~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lel~~~~~ 88 (170)
.+++|+...+. .++.+.+||.+.|||.-.+..+.++-+ ..+.. ++.|.. .....+.+.-+..
T Consensus 177 ~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~--te~Sa-------------Lrs~vlan~~esi~mpinEp 241 (381)
T KOG0638|consen 177 NRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVH--TEYSA-------------LRSIVLANYEESIKMPINEP 241 (381)
T ss_pred eehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhh--hHHHH-------------HHHHHHhcCCccEEEeccCC
Confidence 57899999999 788999999999999887765433211 11111 111110 1112222321111
Q ss_pred CCCCC------CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCC---------C--------c-----
Q 030857 89 TESDP------DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG---------G--------K----- 140 (170)
Q Consensus 89 ~~~~~------~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~---------~--------~----- 140 (170)
.+... .+..++.| .|++|+++.++||-.+.+.++++|.++...|.. . .
T Consensus 242 ~~G~k~ksQIqeyv~y~gG----~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~ 317 (381)
T KOG0638|consen 242 APGKKKKSQIQEYVEYHGG----AGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLE 317 (381)
T ss_pred CCCCccHHHHHHHHHhcCC----CceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHH
Confidence 11100 00112233 499999999999999999999999999877621 0 0
Q ss_pred cceEEEEECCCCCEEEEEecC
Q 030857 141 LKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 141 ~~~~~~~~DPdG~~iel~~~~ 161 (170)
.-+++.-.|-.|+++.|+.+.
T Consensus 318 el~ILvD~De~gyLLQIFTKp 338 (381)
T KOG0638|consen 318 ELGILVDFDENGYLLQIFTKP 338 (381)
T ss_pred HcCeEEecCCCcEEeeeeccc
Confidence 012445557779999998753
No 103
>PF15067 FAM124: FAM124 family
Probab=96.71 E-value=0.032 Score=41.34 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=60.8
Q ss_pred eeeEEEEEeC--ChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 13 FPHFTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 13 ~l~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
.+..++|.|+ |.+.+++||+-+|+-++.... .+| +++..-.+ .+..++|....-+.
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k----~~F--C~F~lys~----------------~~~~iQlsLK~lp~ 185 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQK----EDF--CFFTLYSQ----------------PGLDIQLSLKQLPP 185 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceee----CCc--EEEEEecC----------------CCeEEEEEeccCCC
Confidence 4567889998 999999999999998886642 223 22221110 14566665432221
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEE
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 157 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel 157 (170)
. ..+. +.-..-+.|+|.|+-+++--|-.- . .+...+. .-.+|||||.|-|
T Consensus 186 ~---~~p~------p~esavLqF~V~~igqLvpLLPnp-c---~PIS~~r----WqT~D~DGNkILL 235 (236)
T PF15067_consen 186 G---MSPE------PTESAVLQFRVEDIGQLVPLLPNP-C---SPISETR----WQTEDYDGNKILL 235 (236)
T ss_pred C---CCcc------cccceEEEEEecchhhhcccCCCC-c---ccccCCc----ceeeCCCCCEecc
Confidence 1 1111 112357899999998775432111 1 0111222 2358999999854
No 104
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=96.49 E-value=0.099 Score=41.10 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=65.8
Q ss_pred ceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC
Q 030857 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 90 (170)
Q Consensus 11 ~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~ 90 (170)
..++.+|.++|.|.+.+..=|-..|||+........ ...++ .. ..+-++-+..+.
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk--~v~l~-rQ----------------------Gdinlvvn~~~~ 74 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK--AVTLY-RQ----------------------GDINLVVNAEPD 74 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHHHHhCcccccccccc--ceeEE-Ee----------------------CCEEEEEcCCCc
Confidence 458899999999994444444466999998764322 22222 22 223333222221
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCeEeecCC----------CCccceEEEEECCC
Q 030857 91 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD----------GGKLKGVAFIKDPD 151 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~----------~~~~~~~~~~~DPd 151 (170)
. ....+-. .-+.+..-++|+|+|...++++.++.|.+....+. .+..+..+|+-|.+
T Consensus 75 s--~a~~f~~--~Hgps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 75 S--FAAEFLD--KHGPSACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred c--hhhHHHH--hcCCchheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 1 0000100 11225678999999999999999999996554332 12234577887877
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.47 E-value=0.0078 Score=39.29 Aligned_cols=54 Identities=28% Similarity=0.276 Sum_probs=38.7
Q ss_pred eEEEEEeCCHHHHHHHHHh-cCCeEeecCCC-CccceEEEEECCCC-CEEEEEecCc
Q 030857 109 GHIGITVDDVYKACERFER-LGVEFAKKPDG-GKLKGVAFIKDPDD-YWIEIFDLKT 162 (170)
Q Consensus 109 ~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~-~~~~~~~~~~DPdG-~~iel~~~~~ 162 (170)
+|++|.|+|++++.+.+.+ .|+........ ...-+..++..++| ..|||+++..
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~ 57 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLD 57 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESS
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCC
Confidence 5999999999999999998 89876543221 12223456677877 7899999754
No 106
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.20 E-value=0.024 Score=36.61 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=11.6
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcC
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLG 36 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG 36 (170)
+.+..+.|.|.| +++.+||+++||
T Consensus 4 F~~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 4 FEFESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp EEE-EEEEEE-T--T---S--H---
T ss_pred eEEEEEEEeCCC-hhHHHHHHhccc
Confidence 567889999999 889999999886
No 107
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=95.02 E-value=0.2 Score=33.90 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=33.0
Q ss_pred ceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccC
Q 030857 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 59 (170)
Q Consensus 11 ~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 59 (170)
...+.|+++.|.|++++.+..++ .|.++.........+...+++..++
T Consensus 85 ~~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPd 132 (142)
T cd08353 85 ALGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPE 132 (142)
T ss_pred CCCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCC
Confidence 34688999999999999999977 6888776322222234555666443
No 108
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=94.47 E-value=0.25 Score=34.51 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=33.9
Q ss_pred CceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcce-EEEeeeccC
Q 030857 10 NKRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYED 59 (170)
Q Consensus 10 ~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~ 59 (170)
..+.++||+|.|.|++.+.+-+++ .|.+...... ++.. .++|+-.++
T Consensus 112 ~prGfgHIci~V~di~sac~~lke-kGV~f~Kk~~--dGk~K~iaF~~dpD 159 (170)
T KOG2944|consen 112 EPRGFGHICIEVDDINSACERLKE-KGVRFKKKLK--DGKMKPIAFLHDPD 159 (170)
T ss_pred CCCccceEEEEeCCHHHHHHHHHH-hCceeeecCC--CccccceeEEECCC
Confidence 336899999999999999999977 7999666543 3333 455555443
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.57 E-value=0.78 Score=29.68 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=37.5
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeecCCC-CccceEEEEECCCCCEEEEEecC
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~-~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
+++|+++.|.|++++.+...+ .|.++...... ......+.+..+++..++++...
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 59 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFP 59 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcC
Confidence 678999999999999999985 79988654321 11111233445677788887543
No 110
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=93.41 E-value=0.64 Score=32.55 Aligned_cols=56 Identities=34% Similarity=0.527 Sum_probs=39.2
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-cCCeEeecC-----C---CC---------cc--ceEEEEECCCCCEEEEEecC
Q 030857 106 RGFGHIGITVDDVYKACERFER-LGVEFAKKP-----D---GG---------KL--KGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 106 ~g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~-----~---~~---------~~--~~~~~~~DPdG~~iel~~~~ 161 (170)
.++.|+++.|.|+++..+..++ .|.++..++ . .+ .. -...++..++|..|||++..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 3678999999999999999987 698775321 0 00 11 12455665778889999865
No 111
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=92.91 E-value=0.87 Score=29.55 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=38.1
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeecCCC-C-ccceEEEEECC---CCCEEEEEecCc
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKKPDG-G-KLKGVAFIKDP---DDYWIEIFDLKT 162 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~-~-~~~~~~~~~DP---dG~~iel~~~~~ 162 (170)
++.|+++.|+|+++..+..++ .|.+....... . .....+++.+. .|..++|++...
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 457999999999999999986 59887644321 1 11223445554 577888887543
No 112
>PLN02367 lactoylglutathione lyase
Probab=92.54 E-value=0.91 Score=34.04 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=39.5
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEec
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 86 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 86 (170)
..++|+++.|.|++++.+..++ .|.++........ ...++|+..++ +..+||++.
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~g~-~~riaFIkDPD------------------Gn~IEL~e~ 222 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPNDGK-MKGIAFIKDPD------------------GYWIEIFDL 222 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCccCC-ceEEEEEECCC------------------CCEEEEEec
Confidence 3689999999999999999966 8999886432211 12455665443 578999864
No 113
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.02 E-value=1.2 Score=29.31 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=36.5
Q ss_pred CceEEEEEeCCHHHHHHHHHhc----CCeEeecCCCCccceEEEEECCCCCEEEEEecCc
Q 030857 107 GFGHIGITVDDVYKACERFERL----GVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~----G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
+++|+++.|+|+++..+...+. |.+....... ...|+...++..|+|++...
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~----~~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED----GRSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc----CceEEecCCceEEEEEeccc
Confidence 4579999999999999999886 8887665421 11333334567888876654
No 114
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=91.40 E-value=1.7 Score=29.26 Aligned_cols=55 Identities=9% Similarity=-0.039 Sum_probs=39.9
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEec
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 86 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 86 (170)
.+.|+++.|.|++++.+-.++ .|.++.............+++..++ +..++++..
T Consensus 69 g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~------------------G~~ie~~~~ 123 (136)
T cd08342 69 GVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYG------------------DSLHTLVDR 123 (136)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccC------------------CcEEEEEec
Confidence 578999999999999888866 6999886543323344566666544 578999864
No 115
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=91.20 E-value=1.2 Score=29.00 Aligned_cols=52 Identities=29% Similarity=0.336 Sum_probs=36.1
Q ss_pred eEEEEEeCCHHHHHHHHHh-cCCeEeecCCCC--ccceEEEEECCCCCEEEEEecC
Q 030857 109 GHIGITVDDVYKACERFER-LGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 109 ~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~--~~~~~~~~~DPdG~~iel~~~~ 161 (170)
.|+++.|+|+++..+...+ .|.+........ ......++. .+|..++|++..
T Consensus 2 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~ 56 (128)
T cd07249 2 DHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLG-LGNVQIELIEPL 56 (128)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEE-cCCEEEEEEEEC
Confidence 6999999999999999987 688776543221 111234554 467888888754
No 116
>PRK11478 putative lyase; Provisional
Probab=91.18 E-value=2.6 Score=27.59 Aligned_cols=29 Identities=7% Similarity=0.001 Sum_probs=24.0
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeE
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLK 41 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~ 41 (170)
..+.|+++.|.|++++.+-..+ .|.++..
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 102 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEA 102 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeec
Confidence 3578999999999999888866 6988754
No 117
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=90.96 E-value=1.2 Score=27.93 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=35.7
Q ss_pred ceEEEEEeCCHHHHHHHHH-hcCCeEeecCCCCccceEEEEECCCCCEEEEEecCc
Q 030857 108 FGHIGITVDDVYKACERFE-RLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 108 ~~hl~f~v~di~~~~~~l~-~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
++|+++.|+|++++.+... -.|.+....+.... ...++...++..++|.....
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~i~l~~~~~ 54 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF--PGAWLYAGDGPQLHLIEEDP 54 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC--CceEEEeCCCcEEEEEecCC
Confidence 3699999999999999987 55887665443221 12444555555788886544
No 118
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=90.57 E-value=0.88 Score=28.15 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecC
Q 030857 117 DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 117 di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
..+++.+++.+.|+++.....+....+.+...|.||+.+||.=..
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 689999999999997765443222235688899999999996443
No 119
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=90.56 E-value=3.6 Score=29.70 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=25.0
Q ss_pred ceeeeEEEEEeCChHHHHHHHHHhcCCEEeEe
Q 030857 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 11 ~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
.+..+|++++|.+.+.+.+|-+..+.+...-.
T Consensus 32 ~~~~DHialRvn~~~~A~~~~~~l~~~G~llS 63 (185)
T PF06185_consen 32 QYEIDHIALRVNSNETAERWKQALLQCGELLS 63 (185)
T ss_dssp T-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEE
T ss_pred ccCCcEEEEecCCHHHHHHHHHHHHHhChhhh
Confidence 46789999999999999999999887776554
No 120
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=90.00 E-value=0.45 Score=33.75 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=28.5
Q ss_pred ceEEEEEeCCHHHHHHHH-HhcCCeEeecCCC---CccceEEEEECCCCCEEEEEecCc
Q 030857 108 FGHIGITVDDVYKACERF-ERLGVEFAKKPDG---GKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 108 ~~hl~f~v~di~~~~~~l-~~~G~~~~~~~~~---~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
+.|+.+.|+|++++.+++ ...|+.+...... |-....++| +|| .|||+...+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f--~~~-YlEli~i~~ 56 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPF--GDG-YLELIAIDP 56 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE---SSS-EEEEEEES-
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEee--CCc-eEEEEEeCC
Confidence 369999999999999999 7889988754322 222334555 667 999998543
No 121
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=89.93 E-value=2.1 Score=26.45 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=38.1
Q ss_pred EEEEEeCCHHHHHHHHHh-cCCeEeecCCCCccceEEEEECCCCCEEEEEecCcc
Q 030857 110 HIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 163 (170)
Q Consensus 110 hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 163 (170)
|+.+.|.|+++..+.+.+ .|.+........ .....++.++ +..|+|.+....
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~-~~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNG-GAEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccC-CEEEEEEecC-CceEEEecCCCC
Confidence 788999999999999998 899887665321 1234556554 788998886543
No 122
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=89.82 E-value=2.4 Score=29.49 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=35.8
Q ss_pred CceEEEEEeCCHHHHHHHHHhc-CCeEeecCCCCccceEEEEEC--CCCCEEEEEecC
Q 030857 107 GFGHIGITVDDVYKACERFERL-GVEFAKKPDGGKLKGVAFIKD--PDDYWIEIFDLK 161 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~-G~~~~~~~~~~~~~~~~~~~D--PdG~~iel~~~~ 161 (170)
|++|+++.|+|+++..+...+. |.++..... ....++.. .++..|+|.+..
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~ 54 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG----DRVRLEEGGGGPGAVVDVLEEP 54 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC----CEEEEEecCCCCCCEEEEEeCC
Confidence 4689999999999999999765 988765432 11223232 357889988753
No 123
>PRK10291 glyoxalase I; Provisional
Probab=89.69 E-value=3.5 Score=27.22 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=37.4
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEee-ecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEecc
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRL-DFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 87 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~ 87 (170)
.++|+++.|.|++++.+-.++ .|.++.... ..+......+++..++ +..+||+...
T Consensus 65 ~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPd------------------G~~iel~~~~ 121 (129)
T PRK10291 65 AYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPD------------------GYKIELIEEK 121 (129)
T ss_pred CeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCC------------------CCEEEEEEcc
Confidence 688999999999999888866 788776431 1122222345555433 5789998643
No 124
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=89.57 E-value=2.6 Score=26.82 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=34.5
Q ss_pred EEEEEeCCHHHHHHHHHh-cCCeEeecCCCCccceEEEEECCCC--CEEEEEecC
Q 030857 110 HIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDD--YWIEIFDLK 161 (170)
Q Consensus 110 hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG--~~iel~~~~ 161 (170)
|+++.|.|+++..+...+ .|.++............+++.++++ ..+++.+..
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 55 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPA 55 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCC
Confidence 789999999999999987 7998876532111122355666654 456665443
No 125
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=89.40 E-value=2.6 Score=30.38 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=37.5
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccCCCCCCCCcccceeeecCCCcEEEEEec
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 86 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 86 (170)
.++|+++.|.|++++.+.+++ .|..+..... ......++|+..++ +..+||+..
T Consensus 121 G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~-~~~~~~~~fi~DPd------------------G~~IEl~e~ 174 (185)
T PLN03042 121 GFGHIGITVDDVYKACERFEK-LGVEFVKKPD-DGKMKGLAFIKDPD------------------GYWIEIFDL 174 (185)
T ss_pred CccEEEEEcCCHHHHHHHHHH-CCCeEEeCCc-cCCceeEEEEECCC------------------CCEEEEEEC
Confidence 689999999999999999866 7988875322 11123345555433 578998764
No 126
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.16 E-value=3.4 Score=26.65 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=34.8
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-CCeEeec---CCCCccceEEEEECCCCCEEEEEecC
Q 030857 108 FGHIGITVDDVYKACERFERL-GVEFAKK---PDGGKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 108 ~~hl~f~v~di~~~~~~l~~~-G~~~~~~---~~~~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
++|+++.|+|+++..+...+. |.+.... +..+. ...|+.-.+|..++|++..
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 57 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGF--ESYFLSFDDGARLELMTRP 57 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCc--eEEEEecCCCcEEEEEcCc
Confidence 379999999999999998874 8876432 11111 2234443467889998643
No 127
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=88.71 E-value=3.5 Score=26.47 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=35.4
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-CCeEeecCCCCc-cceEEEEECCC---CCEEEEEec
Q 030857 108 FGHIGITVDDVYKACERFERL-GVEFAKKPDGGK-LKGVAFIKDPD---DYWIEIFDL 160 (170)
Q Consensus 108 ~~hl~f~v~di~~~~~~l~~~-G~~~~~~~~~~~-~~~~~~~~DPd---G~~iel~~~ 160 (170)
+.|+++.|+|++++.+...+. |.++........ ....+++..++ +..+++.+.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEec
Confidence 369999999999999999876 998775432111 11224444443 578888754
No 128
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=87.97 E-value=4 Score=28.16 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=35.5
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-cCCeEeecCCC----CccceEEEEE-CCCCCEEEEEec
Q 030857 106 RGFGHIGITVDDVYKACERFER-LGVEFAKKPDG----GKLKGVAFIK-DPDDYWIEIFDL 160 (170)
Q Consensus 106 ~g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~----~~~~~~~~~~-DPdG~~iel~~~ 160 (170)
.++.|+++.|+|+++..+...+ .|.++...... +......|+. +.+.+.+.+.+.
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 68 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG 68 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC
Confidence 4789999999999999999976 69887543211 1112233433 445566766543
No 129
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=87.83 E-value=5 Score=25.19 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=26.1
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEee
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRL 43 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~ 43 (170)
-...|+.+.|.|+++..+...+ +|.+.....
T Consensus 55 ~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~ 85 (108)
T PF12681_consen 55 GGGFHLCFEVEDVDALYERLKE-LGAEIVTEP 85 (108)
T ss_dssp SSEEEEEEEESHHHHHHHHHHH-TTSEEEEEE
T ss_pred CceeEEEEEEcCHHHHHHHHHH-CCCeEeeCC
Confidence 4778999999999999999876 799876643
No 130
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=87.73 E-value=4.2 Score=26.34 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=30.6
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEe
Q 030857 109 GHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 109 ~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 159 (170)
.|+++.|+|+++..+-....|.++........ .+.+.-++|..+.+..
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~~---~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFPEEADDEP---HVEAVLPGGVRLAWDT 49 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceecCCcCCCC---cEEEEeCCCEEEEEEc
Confidence 58999999999999999878887643221111 1333445555555443
No 131
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=87.08 E-value=3 Score=27.12 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=34.0
Q ss_pred ceEEEEEeCCHHHHHHHHHh-cCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 108 FGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 108 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
+.|+++.|+|++++.+..++ .|.++.........+..+++..+++..|+|.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEec
Confidence 46999999999999999985 588765432111111123333345677888764
No 132
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=85.68 E-value=4.5 Score=29.21 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=38.6
Q ss_pred CceEEEEEeC--CHHHHHHHHHh-cCCeEeecCC-CCc--cceEEEEECCCC-CEEEEEecCc
Q 030857 107 GFGHIGITVD--DVYKACERFER-LGVEFAKKPD-GGK--LKGVAFIKDPDD-YWIEIFDLKT 162 (170)
Q Consensus 107 g~~hl~f~v~--di~~~~~~l~~-~G~~~~~~~~-~~~--~~~~~~~~DPdG-~~iel~~~~~ 162 (170)
.+.|+++.|+ |++++.+...+ .|.+...... ..+ ..+..++..|+| ..|+|.+...
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 5689999999 99999999876 6988765332 111 123456677765 5688887543
No 133
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=85.36 E-value=4.3 Score=26.05 Aligned_cols=53 Identities=30% Similarity=0.481 Sum_probs=35.4
Q ss_pred CceEEEEEeCCHHHHHHHHHhc-CCeEeecCC---CCccceEEEEECCCCCEEEEEec
Q 030857 107 GFGHIGITVDDVYKACERFERL-GVEFAKKPD---GGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~-G~~~~~~~~---~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
+++|+++.|.|+++..+...+. |.++..... ........++...+ ..+++...
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 57 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE-GHIELFLN 57 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS-SCEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc-cceeeeee
Confidence 3689999999999999999874 998876543 12222344454444 44666543
No 134
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=85.28 E-value=10 Score=26.34 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=29.9
Q ss_pred eeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeec
Q 030857 14 PHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 57 (170)
Q Consensus 14 l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~ 57 (170)
.+|++++|.+.+.+.+|.+..+.+...-....-.++ .++.+.+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGR-PI~l~~L 44 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGR-PIALIKL 44 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe-eEEEEEc
Confidence 589999999999999999988876655443222222 4444444
No 135
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=85.00 E-value=7.4 Score=25.14 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=34.4
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeecCCCCccceEEEEECCC-CCEEEEEecC
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPD-DYWIEIFDLK 161 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPd-G~~iel~~~~ 161 (170)
.+.|+.+.|+|+++..+...+ .|.++..... ..+++...+ +..|.|.+..
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~-----~~~~l~~~~~~~~l~l~~~~ 53 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD-----STAVLGTGGKRPLLVLEEDP 53 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC-----CEEEEecCCCeEEEEEEeCC
Confidence 357999999999999999986 5988876531 124444443 4566666543
No 136
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=84.91 E-value=8.4 Score=25.38 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=34.9
Q ss_pred ceEEEEEeCCHHHHHHHHHh-cCCeEeecCCCCccceEEEEECC--CCCEEEEEecC
Q 030857 108 FGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP--DDYWIEIFDLK 161 (170)
Q Consensus 108 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DP--dG~~iel~~~~ 161 (170)
+.|+.+.|+|+++..+...+ .|.++...... ....|+..+ .+..+.+++..
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~l~l~~~~ 55 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL---GGLVFLSRDPDEHHQIALITGR 55 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccC---CcEEEEEecCCCceEEEEEecC
Confidence 47999999999999999987 79887654321 123454433 34567776553
No 137
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=83.45 E-value=8.9 Score=24.50 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=25.9
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeecC
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKKP 136 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~ 136 (170)
++.|+.+.|+|+++..+..++ .|.++....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 678999999999999999988 698877554
No 138
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=83.43 E-value=6.4 Score=26.21 Aligned_cols=30 Identities=13% Similarity=-0.062 Sum_probs=24.5
Q ss_pred eeeeEEEEEeCChHHHHHHHHHh--cCCEEeE
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRV--LGMSLLK 41 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~--lG~~~~~ 41 (170)
.+++|+++.|.|++...+++..+ .|+++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~ 92 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGW 92 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCcccc
Confidence 47899999999999999888766 5776553
No 139
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=83.27 E-value=9.5 Score=24.35 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=24.8
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCeEeec
Q 030857 107 GFGHIGITVDDVYKACERFERLGVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~G~~~~~~ 135 (170)
++.|+++.|.|+++..+.....|.++...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 56899999999999999998889887643
No 140
>PRK11700 hypothetical protein; Provisional
Probab=82.97 E-value=15 Score=26.53 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=31.7
Q ss_pred ceeeeEEEEEeCChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeec
Q 030857 11 KRFPHFTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 57 (170)
Q Consensus 11 ~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~ 57 (170)
.+..+|++++|.+.+.+.+|-+..+.+...-....-.++ .++.+.+
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGR-PI~l~~L 82 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLSENIINGR-PICLFEL 82 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe-eEEEEEc
Confidence 357899999999999999999888866555432222222 4444444
No 141
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=82.53 E-value=8.2 Score=24.73 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=22.2
Q ss_pred eEEEEEeCChHHHHHHHHHhcCCEEeEe
Q 030857 15 HFTMFRIKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 15 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
.|+.+.|.|+++..+...+ .|.++...
T Consensus 68 ~~~~~~v~did~~~~~l~~-~G~~~~~~ 94 (119)
T cd08359 68 LILNFEVDDVDAEYERLKA-EGLPIVLP 94 (119)
T ss_pred EEEEEEECCHHHHHHHHHh-cCCCeeec
Confidence 3899999999999999877 68876543
No 142
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=81.93 E-value=13 Score=25.21 Aligned_cols=29 Identities=10% Similarity=0.034 Sum_probs=24.7
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEe
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
.+.|+++.|.|++++.+...+ .|.++...
T Consensus 86 g~~hi~f~v~dld~~~~~l~~-~G~~~~~~ 114 (150)
T TIGR00068 86 GFGHIAIGVDDVYKACERVRA-LGGNVVRE 114 (150)
T ss_pred ceeEEEEecCCHHHHHHHHHH-cCCccccC
Confidence 678999999999999999976 78877653
No 143
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=81.81 E-value=0.83 Score=24.79 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=19.7
Q ss_pred eeeEEEEEeCChHHHHHHHHHhc
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVL 35 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~l 35 (170)
..+-.+|.+++++++..||+.-|
T Consensus 11 p~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 11 PVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred ccccCCCccccccchhHHHHHHH
Confidence 45678888899999999999865
No 144
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=80.49 E-value=12 Score=24.31 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=24.4
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeec
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 135 (170)
.+.|+++.|+|+++..+...+ .|.++...
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccC
Confidence 457999999999999999977 59887654
No 145
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=80.07 E-value=15 Score=24.39 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=34.0
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeecCCCC-c-cceEEEEECCCCCEEEEEecC
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGG-K-LKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~-~-~~~~~~~~DPdG~~iel~~~~ 161 (170)
++.|+++.|+|+++..+...+ .|.+........ . .+...++. -++..|++.+..
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~ 60 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-IGGLWIAIMEGD 60 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-cCCeEEEEecCC
Confidence 678999999999999999877 688765443211 1 11111222 235677777543
No 146
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.26 E-value=5.1 Score=22.79 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.8
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCeE
Q 030857 107 GFGHIGITVDDVYKACERFERLGVEF 132 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~G~~~ 132 (170)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44688999999999999999999875
No 147
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=79.23 E-value=12 Score=25.65 Aligned_cols=30 Identities=13% Similarity=-0.072 Sum_probs=23.0
Q ss_pred eeeeEEEEEeCChHHHHHHHHH--hcCCEEeE
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSR--VLGMSLLK 41 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~--~lG~~~~~ 41 (170)
-+++|+++.|.|++++.+.+.. -.|+++..
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~ 97 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVW 97 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEee
Confidence 4689999999999999855543 25777764
No 148
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=76.69 E-value=16 Score=23.57 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=32.0
Q ss_pred eEEEEEeCCHHHHHHHHHhc----CCeEeecCCCCccceEEEEECC-CCCEEEEEec
Q 030857 109 GHIGITVDDVYKACERFERL----GVEFAKKPDGGKLKGVAFIKDP-DDYWIEIFDL 160 (170)
Q Consensus 109 ~hl~f~v~di~~~~~~l~~~----G~~~~~~~~~~~~~~~~~~~DP-dG~~iel~~~ 160 (170)
.|+++.|+|+++..+..++. |.+....... . .+++..+ .+..+.|...
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~ 54 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGP-G---AVGYGKGGGGPDFWVTKP 54 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCC-c---eeEeccCCCCceEEEecc
Confidence 59999999999999888874 8887654311 1 1333444 3566666654
No 149
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=76.19 E-value=17 Score=22.99 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=23.5
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEe
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
...|+.+.|.|++++.+-+++ .|.++...
T Consensus 57 ~~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 57 VVPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 356999999999999888866 68887654
No 150
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=76.06 E-value=17 Score=22.97 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=23.8
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEe
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
...|+.+.|+|+++..+-..+ .|.++...
T Consensus 61 ~~~~~~f~v~di~~~~~~l~~-~g~~~~~~ 89 (114)
T cd07247 61 PGWLVYFAVDDVDAAAARVEA-AGGKVLVP 89 (114)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEEeC
Confidence 567899999999999888766 69887765
No 151
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=76.06 E-value=17 Score=24.61 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=22.2
Q ss_pred eeeeEEEEEeCChHHHHHHHHHh--cCCEEeE
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRV--LGMSLLK 41 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~--lG~~~~~ 41 (170)
.+++|+++.|.|++...++++.+ .|.+...
T Consensus 55 ~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~ 86 (141)
T cd07258 55 SHFHHVNFMVTDIDDIGKALYRIKAHDVKVVF 86 (141)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCcEEe
Confidence 47999999999887666666554 4776543
No 152
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=74.27 E-value=21 Score=23.14 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=31.7
Q ss_pred CceEEEEEeCCHHHHHHHHHhc-CCeEeecCCCCccceEEEEECCCCCEEEEEe
Q 030857 107 GFGHIGITVDDVYKACERFERL-GVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~-G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 159 (170)
.+.|+++.|+|+++..+...+. |.+..... +. ..++...+|..+++.+
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~--~~---~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF--GP---FAVVKLDNGVSLDFAQ 52 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc--CC---EEEEEcCCCcEEEEec
Confidence 4579999999999999998764 88765422 11 2333334456666555
No 153
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.98 E-value=19 Score=23.07 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=21.5
Q ss_pred eEEEEEeCChHHHHHHHHHhcCCEEeEe
Q 030857 15 HFTMFRIKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 15 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
.|+.+.|.|++++.+...+ .|.+....
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~ 99 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSE 99 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccC
Confidence 4789999999999888765 58877654
No 154
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=73.27 E-value=23 Score=23.24 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=32.1
Q ss_pred eEEEEEeCCHHHHHHHHHh-cCCeEeecCCCCccceEEEEECCC-CCEEEEEec
Q 030857 109 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPD-DYWIEIFDL 160 (170)
Q Consensus 109 ~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPd-G~~iel~~~ 160 (170)
.|+++.|.|++++.+...+ .|.++.............|++..+ +..+.+...
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPG 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcC
Confidence 3999999999999998876 698876432211111234444433 345666543
No 155
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=71.45 E-value=24 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=25.0
Q ss_pred CceEEEEEeCCHHHHHHHHHhc-CCeEeec
Q 030857 107 GFGHIGITVDDVYKACERFERL-GVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~-G~~~~~~ 135 (170)
++.|+.+.|+|+++..+...+. |.++...
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEee
Confidence 6789999999999999999875 8877654
No 156
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=70.70 E-value=30 Score=23.42 Aligned_cols=29 Identities=14% Similarity=-0.063 Sum_probs=21.4
Q ss_pred eeeEEEEEeCChHHHHHHHHHh--cCCEEeE
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRV--LGMSLLK 41 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~--lG~~~~~ 41 (170)
.++|+++.|.|++...+.+..+ .|.++..
T Consensus 67 ~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~ 97 (143)
T cd07243 67 KLHHFSFFLESWEDVLKAGDIISMNDVSIDI 97 (143)
T ss_pred CceEEEEEcCCHHHHHHHHHHHHHcCCceEE
Confidence 6899999999999866555432 5777653
No 157
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=69.61 E-value=10 Score=24.48 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=24.9
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeec
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 135 (170)
.+.|+.+.|+|+++..+...+ .|.++...
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 678999999999999999986 69887654
No 158
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=69.42 E-value=27 Score=22.40 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=21.4
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcC-CEEeE
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLG-MSLLK 41 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG-~~~~~ 41 (170)
...|+.+.|.|+++..+-.++ .| .+...
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~-~g~~~~~~ 92 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKR-YDNIEYVH 92 (120)
T ss_pred CceEEEEEehhhHHHHHHHHh-cCCcEEec
Confidence 457999999999999998877 45 34443
No 159
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=69.34 E-value=28 Score=24.06 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.3
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEee
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAK 134 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~ 134 (170)
.+.|+++.|.|+++..+-..+ .|.++..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 678999999999999999987 6988764
No 160
>PRK06724 hypothetical protein; Provisional
Probab=69.14 E-value=31 Score=22.96 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=19.5
Q ss_pred eeeEEEEEeCChHHHHHHHHHh--cCCEEeE
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRV--LGMSLLK 41 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~--lG~~~~~ 41 (170)
...|+++.|.+.+.-.++++.+ .|.+...
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~ 93 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSSTKIKIIR 93 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHHCCCEEec
Confidence 5689999996555555555544 5877654
No 161
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=68.97 E-value=26 Score=22.06 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=25.5
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeecC
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKKP 136 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~ 136 (170)
.+.|+.+.|+|+++..+...+ .|.++....
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeec
Confidence 357999999999999999998 698877654
No 162
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.71 E-value=23 Score=21.34 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCeEeecC--CCCcc-ceEEEEECCCCCEEE
Q 030857 118 VYKACERFERLGVEFAKKP--DGGKL-KGVAFIKDPDDYWIE 156 (170)
Q Consensus 118 i~~~~~~l~~~G~~~~~~~--~~~~~-~~~~~~~DPdG~~ie 156 (170)
+..+.+-|.+.|+.+..-. ..+.. --.||++|.+|+.+.
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 6777888999999887543 22322 237899999998773
No 163
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=68.37 E-value=12 Score=26.51 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 154 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 154 (170)
.|++.+.+.|++.|+++..+-..+..++.++|.--+|..
T Consensus 115 rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 115 KNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999999887777777767654333543
No 164
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=67.91 E-value=35 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=25.1
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-cCCeEeec
Q 030857 106 RGFGHIGITVDDVYKACERFER-LGVEFAKK 135 (170)
Q Consensus 106 ~g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 135 (170)
.++.|+++.|+|+++..+...+ .|.++...
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 3678999999999999999975 69887543
No 165
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=67.90 E-value=30 Score=22.33 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=30.9
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 109 GHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 109 ~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
.++.+.|+|+++..+-.+..|.+.......... ..+.. .++..+.|.+.
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~~~~~~~~--~~~~~-~~~~~l~l~~~ 50 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNPQFSDEKA--ACMVI-SDNIFVMLLTE 50 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEccccCCCCe--EEEEE-CCceEEEEEcH
Confidence 478899999999999998888876532211111 12222 34566666654
No 166
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=66.89 E-value=36 Score=22.86 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.7
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCeEeec
Q 030857 109 GHIGITVDDVYKACERFERLGVEFAKK 135 (170)
Q Consensus 109 ~hl~f~v~di~~~~~~l~~~G~~~~~~ 135 (170)
.-+.++|+|+|++.+.|+++|+++...
T Consensus 110 Alli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 110 ALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 467899999999999999999987654
No 167
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.63 E-value=16 Score=21.26 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=21.6
Q ss_pred CceEEEEEeC--CHHHHHHHHHhcCCeEee
Q 030857 107 GFGHIGITVD--DVYKACERFERLGVEFAK 134 (170)
Q Consensus 107 g~~hl~f~v~--di~~~~~~l~~~G~~~~~ 134 (170)
+...+.|+++ +.+.+.+.|+++|+++..
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3455666665 888999999999998764
No 168
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=66.50 E-value=37 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.8
Q ss_pred ceEEEEEeCCHHHHHHHHHh-cCCeEeec
Q 030857 108 FGHIGITVDDVYKACERFER-LGVEFAKK 135 (170)
Q Consensus 108 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 135 (170)
+.|++++|.|++...+-..+ .|.++...
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~~ 31 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLRH 31 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEee
Confidence 57999999999999999965 69987653
No 169
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=66.29 E-value=14 Score=26.05 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 154 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 154 (170)
.|++.+.+.|++.|+++..+-..+..++.++|.--+|..
T Consensus 112 rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 489999999999999999887777777767663333443
No 170
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=65.62 E-value=32 Score=21.86 Aligned_cols=28 Identities=11% Similarity=-0.100 Sum_probs=22.7
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeE
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLK 41 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~ 41 (170)
.+.|+++.|.|.++..+.. +.+|.....
T Consensus 57 ~~~~~af~v~~~~~~~~~~-~~~g~~~~~ 84 (113)
T cd07267 57 RFVGAAFEAASRADLEKAA-ALPGASVID 84 (113)
T ss_pred cccEEEEEECCHHHHHHHH-HcCCCeeec
Confidence 5789999999999888885 557887654
No 171
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=65.61 E-value=30 Score=21.51 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=20.8
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCE
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMS 38 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~ 38 (170)
.-.|+++.|.|+++..+-..+ .|.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 58 RGGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred CcEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 445899999999999998866 6887
No 172
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=65.34 E-value=16 Score=25.78 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 154 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 154 (170)
.|++.+.+.|++.|+++...-..+..++.++|.--+|..
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 143 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKL 143 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999999877667777767664344544
No 173
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=64.75 E-value=17 Score=25.80 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 154 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 154 (170)
.|++.+.+.|++.|+++..+-..+..++.++|.--+|..
T Consensus 114 rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999999887677777767764333543
No 174
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=64.47 E-value=36 Score=22.71 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=21.6
Q ss_pred eeeeEEEEEeC--ChHHHHHHHHHhcCCEEeE
Q 030857 12 RFPHFTMFRIK--DPKVSLDFYSRVLGMSLLK 41 (170)
Q Consensus 12 ~~l~hv~i~v~--d~~~s~~FY~~~lG~~~~~ 41 (170)
..++|+++.+. |+++..+...+ .|.++..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~ 92 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILP 92 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcC
Confidence 35789999987 78777777765 6887654
No 175
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.34 E-value=45 Score=23.14 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=29.0
Q ss_pred EEEEEeCC---HHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 110 HIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 110 hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
.+-+.++| +|.+..+|.+.|.+ ...+.+++|-.|.-|.|+-+
T Consensus 80 S~~v~~~~q~E~Drlwnal~~~g~e---------~~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 80 SFQVACDDQEEIDRLWNALSDNGGE---------AEACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EEEEEcCCHHHHHHHHHHHhccCcc---------hhcceeEecccCcEEEEcHH
Confidence 34444554 77788888888761 12246789999999999754
No 176
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=64.25 E-value=12 Score=24.65 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 154 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 154 (170)
.|++.+.+.|.+.|+++...-..+..++.++|.=.+|.+
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v 102 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEV 102 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEE
Confidence 489999999999999999877667777777764344543
No 177
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=64.19 E-value=16 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=24.8
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeec
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 135 (170)
.+.|+.+.|+|+++..+...+ .|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 568999999999999999987 68887644
No 178
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=62.22 E-value=19 Score=26.00 Aligned_cols=40 Identities=10% Similarity=-0.035 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 155 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 155 (170)
.|++.+.+.|++.|+++...-..+..++.++|.--+|..+
T Consensus 112 rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence 4899999999999999998877777777666544445543
No 179
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=61.78 E-value=16 Score=23.03 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=25.2
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeecC
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKKP 136 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~ 136 (170)
.+.|+++.|+|+++..+..++ .|.+.....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 32 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDT 32 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeec
Confidence 458999999999999999987 788876543
No 180
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=61.01 E-value=21 Score=25.13 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 155 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 155 (170)
.|++.+.+.|++.|+++..+-..+..++.++| |++-..+
T Consensus 107 rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f-~~~tG~v 145 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAEDVGGDYGRTVKF-DLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEE-ECCCCEE
Confidence 58999999999999999987766777776765 4443333
No 181
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=60.29 E-value=50 Score=22.32 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.5
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEee
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAK 134 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~ 134 (170)
.+.|+.+.|+|++++.+..++ .|.++..
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~ 32 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVSD 32 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEEE
Confidence 568999999999999999965 5887653
No 182
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=59.96 E-value=42 Score=21.27 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=24.4
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeec
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 135 (170)
+++|+.|.|+|+++..+...+ .|.+....
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 678999999999999998887 58876543
No 183
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.78 E-value=37 Score=20.63 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCeEeecCC--CCcc-ceEEEEECCCCCEEE
Q 030857 118 VYKACERFERLGVEFAKKPD--GGKL-KGVAFIKDPDDYWIE 156 (170)
Q Consensus 118 i~~~~~~l~~~G~~~~~~~~--~~~~-~~~~~~~DPdG~~ie 156 (170)
+..+.+.|.+.|+.+..-.. .+.. --.+|++|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 56777888999998875432 2222 237899999998763
No 184
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=59.44 E-value=22 Score=26.41 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCC
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 153 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~ 153 (170)
.|++.+.+.|++.|+++...-..|..++.++|.--+|.
T Consensus 139 rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~ 176 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQ 176 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCE
Confidence 38999999999999999988767777776665433343
No 185
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=59.17 E-value=22 Score=26.11 Aligned_cols=39 Identities=0% Similarity=-0.148 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 154 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 154 (170)
.|++.+.+.|++.|+++...-..|..++.++|.--+|..
T Consensus 127 rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~v 165 (201)
T PRK13487 127 RNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGKV 165 (201)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 489999999999999999877677777766654333433
No 186
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=59.15 E-value=43 Score=21.16 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=22.3
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeEe
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
....|+.+.|.|+++..+-..+ .|.+....
T Consensus 67 ~~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~ 96 (122)
T cd07246 67 GTPVSLHLYVEDVDATFARAVA-AGATSVMP 96 (122)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeEecC
Confidence 3467999999999987666654 58877654
No 187
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=58.54 E-value=24 Score=25.88 Aligned_cols=40 Identities=10% Similarity=-0.035 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 155 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 155 (170)
.|++.+.+.|++.|+++...-..+..++.++|.--+|..+
T Consensus 115 rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 4899999999999999998776677777666543445443
No 188
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=58.01 E-value=49 Score=21.48 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=24.1
Q ss_pred CceEEEEEeCCHHHHHHHHHhc-CCeEeec
Q 030857 107 GFGHIGITVDDVYKACERFERL-GVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~-G~~~~~~ 135 (170)
.+.|+++.|+|+++..+...+. |.++...
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAER 35 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccC
Confidence 5579999999999999999874 8876543
No 189
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=57.51 E-value=12 Score=29.27 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=34.5
Q ss_pred eeEEEEEe-----CChHHHHHHHHHhcCCEEeEeeecCCcceEEEeeeccC
Q 030857 14 PHFTMFRI-----KDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 59 (170)
Q Consensus 14 l~hv~i~v-----~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 59 (170)
-+|++|++ ..++...+++ ..||+.+.....++..++...++...+
T Consensus 35 ~dH~A~RT~~~~~~gl~~lar~F-~~lGy~~~G~Y~f~~kkl~a~~f~p~d 84 (302)
T PF07063_consen 35 NDHGAFRTFGGPPYGLASLARIF-AALGYEPVGYYDFPAKKLHATWFRPPD 84 (302)
T ss_dssp EEEEEEEEECTSHCCHHHHHHHH-HTTTEEEEEEEEEGGGTEEEEEEEETS
T ss_pred eeeeEEEecCCCchhHHHHHHHH-HHcCCEEcceecccccCceEEEecCCC
Confidence 38999994 3677778888 559999999888887777666766544
No 190
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=56.96 E-value=28 Score=22.46 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=23.8
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCeEeec
Q 030857 107 GFGHIGITVDDVYKACERFER-LGVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 135 (170)
++.|+++.|.|++++.+...+ .|.+....
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 357999999999999999886 58876543
No 191
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=53.86 E-value=59 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=20.9
Q ss_pred eEEEEEeCCH---HHHHHHHHhcCCeEeecCCCC
Q 030857 109 GHIGITVDDV---YKACERFERLGVEFAKKPDGG 139 (170)
Q Consensus 109 ~hl~f~v~di---~~~~~~l~~~G~~~~~~~~~~ 139 (170)
.|+|++|.+. +.+.+.+.+.|-.+.....+|
T Consensus 3 DHialR~n~~~~A~~w~~~l~~~G~llSen~ING 36 (149)
T cd07268 3 DHIALRVNENQTAERWKEGLLQCGELLSENEING 36 (149)
T ss_pred ceEEEeeCCHHHHHHHHHHHHHhchhhhccccCC
Confidence 5999999974 445666777776665544444
No 192
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=53.17 E-value=32 Score=25.90 Aligned_cols=38 Identities=3% Similarity=-0.151 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCC
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 153 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~ 153 (170)
.|++.+.+.|++.|+++..+-..|..++.++|.--+|.
T Consensus 125 RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f~~~TG~ 162 (233)
T PRK13489 125 RNADFVRRYLALERIRITAEDLQGVHPRKVAFMPRTGR 162 (233)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCE
Confidence 48999999999999999988777777776665333343
No 193
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=52.78 E-value=41 Score=23.80 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCC
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPD 151 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPd 151 (170)
.|.+.+.+.|++.|++++.+-..+..++-++| +|.
T Consensus 114 rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F-~p~ 148 (164)
T COG1871 114 RNVEFAKEFLKDEGIPILAEDTGGDSGRTIEF-NPS 148 (164)
T ss_pred HHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEE-ecC
Confidence 48999999999999999988777777776776 454
No 194
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.14 E-value=13 Score=27.74 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHhcCCEEeEe
Q 030857 23 DPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 23 d~~~s~~FY~~~lG~~~~~~ 42 (170)
|+.+++.||.+.||+.+...
T Consensus 146 ~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred ccHHHHHHHHHhcCceeeec
Confidence 77888999999999999875
No 195
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=52.12 E-value=19 Score=16.44 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=8.4
Q ss_pred EEEECCCCCEEE
Q 030857 145 AFIKDPDDYWIE 156 (170)
Q Consensus 145 ~~~~DPdG~~ie 156 (170)
..++|++|++|-
T Consensus 9 ~i~~D~~G~lWi 20 (24)
T PF07494_consen 9 SIYEDSDGNLWI 20 (24)
T ss_dssp EEEE-TTSCEEE
T ss_pred EEEEcCCcCEEE
Confidence 456899999874
No 196
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=51.00 E-value=18 Score=24.19 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.2
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCeEe
Q 030857 109 GHIGITVDDVYKACERFERLGVEFA 133 (170)
Q Consensus 109 ~hl~f~v~di~~~~~~l~~~G~~~~ 133 (170)
.|+-.+-+|++.+.++|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4777777899999999999998764
No 197
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=50.82 E-value=28 Score=19.79 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=19.8
Q ss_pred CHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecC
Q 030857 117 DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 117 di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
++++...+-..+|-.+......+. +-..+|||.+|-|.+..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~~g~----~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGPPGP----VAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B-----S-----EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCCCCCce----EEEECCCCcEEEEEEcc
Confidence 456666777778877665432222 33469999999999754
No 198
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.22 E-value=34 Score=20.99 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=23.5
Q ss_pred CceEEEEEeCC----HHHHHHHHHhcCCeEeec
Q 030857 107 GFGHIGITVDD----VYKACERFERLGVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~d----i~~~~~~l~~~G~~~~~~ 135 (170)
+...+.+.++| ++.+.+.|+++|+++...
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 33567788888 999999999999988653
No 199
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.63 E-value=98 Score=22.15 Aligned_cols=30 Identities=10% Similarity=0.116 Sum_probs=22.9
Q ss_pred eeeeEEEEEeCChHHHHHHHHHhcCCEEeE
Q 030857 12 RFPHFTMFRIKDPKVSLDFYSRVLGMSLLK 41 (170)
Q Consensus 12 ~~l~hv~i~v~d~~~s~~FY~~~lG~~~~~ 41 (170)
+..+|++|.|.+.+-+..|-+-.+.+...-
T Consensus 38 ~~~DHIaLRvh~~qtAk~wr~~~lqcG~~l 67 (185)
T COG3102 38 YTADHIALRVHQEQTAKRWRRGLLQCGELL 67 (185)
T ss_pred cccceeEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 578999999999888887776666555443
No 200
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=48.03 E-value=44 Score=19.15 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.3
Q ss_pred EEEEEeCCHHHHHHHHHhcCCeEe
Q 030857 110 HIGITVDDVYKACERFERLGVEFA 133 (170)
Q Consensus 110 hl~f~v~di~~~~~~l~~~G~~~~ 133 (170)
.+-+.++|.+.+.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 455566888899999999998763
No 201
>PRK11700 hypothetical protein; Provisional
Probab=47.87 E-value=77 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=21.8
Q ss_pred eEEEEEeCC---HHHHHHHHHhcCCeEeecCCCCc
Q 030857 109 GHIGITVDD---VYKACERFERLGVEFAKKPDGGK 140 (170)
Q Consensus 109 ~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~ 140 (170)
.|++++|.+ -+.+.+.+.+.|-.+.....+|+
T Consensus 41 DHialR~n~~~tAe~w~~~l~~~G~llSen~INGR 75 (187)
T PRK11700 41 DHIALRCNQNETAERWRQGFLQCGELLSENIINGR 75 (187)
T ss_pred cEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe
Confidence 699999996 44556677777776655544443
No 202
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=43.14 E-value=25 Score=23.06 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=29.3
Q ss_pred EeCCHHHHHHHHHhcCCeEeecCCCCcc--ce-EEEEECCCCCEEEEEe
Q 030857 114 TVDDVYKACERFERLGVEFAKKPDGGKL--KG-VAFIKDPDDYWIEIFD 159 (170)
Q Consensus 114 ~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~-~~~~~DPdG~~iel~~ 159 (170)
.+.++...+++++..| .+.-.-..+.+ +. .+...|++|.+++-..
T Consensus 22 Qik~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~ 69 (109)
T PF06923_consen 22 QIKNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEI 69 (109)
T ss_pred HHHHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEE
Confidence 3457888999999998 34332222222 22 5567899999988543
No 203
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=42.79 E-value=37 Score=24.58 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=19.3
Q ss_pred ceEEEEEeCCH---HHHHHHHHhcCCeEeecCCCC
Q 030857 108 FGHIGITVDDV---YKACERFERLGVEFAKKPDGG 139 (170)
Q Consensus 108 ~~hl~f~v~di---~~~~~~l~~~G~~~~~~~~~~ 139 (170)
..|+|++|.+. +.+.+.+.+.|-.+...-.+|
T Consensus 35 ~DHialRvn~~~~A~~~~~~l~~~G~llSen~ING 69 (185)
T PF06185_consen 35 IDHIALRVNSNETAERWKQALLQCGELLSENMING 69 (185)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETT
T ss_pred CcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCC
Confidence 37999999974 445666777785544444444
No 204
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.24 E-value=23 Score=29.59 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=34.2
Q ss_pred CCCCCCCCCceeeeEEEEEeCChHHHHHHHHHhcCCEEe
Q 030857 2 KLPTDTSCNKRFPHFTMFRIKDPKVSLDFYSRVLGMSLL 40 (170)
Q Consensus 2 ~~~~~~~~~~~~l~hv~i~v~d~~~s~~FY~~~lG~~~~ 40 (170)
||-|+++.-++.+..+.+.-++..++++||+-.|...+.
T Consensus 231 kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps 269 (840)
T KOG2003|consen 231 KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS 269 (840)
T ss_pred cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc
Confidence 688899888888999999999999999999988876554
No 205
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=39.87 E-value=1.2e+02 Score=20.53 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=34.5
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCeEe--ecCCC------Cc-------------cceEEEEECCCCCEEEEEe
Q 030857 107 GFGHIGITVDDVYKACERFERLGVEFA--KKPDG------GK-------------LKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~G~~~~--~~~~~------~~-------------~~~~~~~~DPdG~~iel~~ 159 (170)
++.-+++.+++.+++.+.+++.|+.+. ..+.. +- .-+..|+.|++|.++..+.
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 556778888887777777777776543 22210 00 0034688999999998875
No 206
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=38.02 E-value=1.1e+02 Score=19.48 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=21.4
Q ss_pred eeeEEEEEeCChHHHHHHHHHhcCCEEeEe
Q 030857 13 FPHFTMFRIKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 13 ~l~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
.-.|+.+.|.|++++.+-..+ .|.++...
T Consensus 68 ~~~~~~~~v~d~d~~~~~l~~-~G~~v~~~ 96 (122)
T cd08355 68 GTQGVYVVVDDVDAHYERARA-AGAEILRE 96 (122)
T ss_pred ceEEEEEEECCHHHHHHHHHH-CCCEEeeC
Confidence 346899999999877776655 58777754
No 207
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=37.68 E-value=1e+02 Score=19.31 Aligned_cols=48 Identities=29% Similarity=0.312 Sum_probs=32.3
Q ss_pred eEEEEEeCCHHHHHHHHHh-cCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 109 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 109 ~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
.++++.|.|+++..+..++ .|.++...+. + ..+++.-.++..+.+++.
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~---~~~~l~~~~~~~~~l~~~ 50 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKED-R---RLAFFWVGGRGMLLLFDP 50 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCC-C---ceEEEEcCCCcEEEEEec
Confidence 4789999999999999975 5988776432 1 124444444466666653
No 208
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=36.75 E-value=98 Score=18.94 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=15.0
Q ss_pred eCChHHHHHHHHHhcCCEEeEe
Q 030857 21 IKDPKVSLDFYSRVLGMSLLKR 42 (170)
Q Consensus 21 v~d~~~s~~FY~~~lG~~~~~~ 42 (170)
..+=+.|.++|++ |||+....
T Consensus 62 ~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 62 DADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp ETT-HHHHHHHHH-CT-EEEEE
T ss_pred ECCCHHHHHHHHH-cCCEEEEE
Confidence 3466689999976 89999865
No 209
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=1.5e+02 Score=20.86 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=38.3
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCeEe--ecCC---------C------Cc----cceEEEEECCCCCEEEEEe
Q 030857 107 GFGHIGITVDDVYKACERFERLGVEFA--KKPD---------G------GK----LKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~G~~~~--~~~~---------~------~~----~~~~~~~~DPdG~~iel~~ 159 (170)
+..-+++++++.....+...+.|+.+. ..+. . +. ..|.-|+.|+||.+..++.
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~ 137 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWR 137 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEec
Confidence 557889999998888888888887764 2220 0 11 1357899999999999984
No 210
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.99 E-value=36 Score=26.69 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=19.6
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhc
Q 030857 104 EPRGFGHIGITVDDVYKACERFERL 128 (170)
Q Consensus 104 ~~~g~~hl~f~v~di~~~~~~l~~~ 128 (170)
..-.+-||||.|+|+|+......=.
T Consensus 165 EeitYP~icFavD~FdevF~dvvvr 189 (390)
T KOG2465|consen 165 EEITYPEICFAVDDFDEVFDDVVVR 189 (390)
T ss_pred ceeccceEEEEecCHHHhhhhhEEe
Confidence 3447889999999999998765433
No 211
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=35.85 E-value=60 Score=25.22 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=38.7
Q ss_pred CCCCCCCceEEEEEeCC-HHHHHHHHHhcCCeEeecCC-CCccceEEEEECCCCCEEEEEecC
Q 030857 101 GNSEPRGFGHIGITVDD-VYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 101 ~~~~~~g~~hl~f~v~d-i~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iel~~~~ 161 (170)
|+........|+..|+| +..+.+-|++..-.+...|. .++. ...-|+.++|+.+|+....
T Consensus 151 gDaDiAqd~aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~a-k~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 151 GDADIAQDYAISREVDDSLPPILDLLRSVDPSFRPVPHRSDPA-KSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred CCchHHHhhhhhHHhcccccHHHHHHhccCcccccCCccCCCc-cceeeecCCCeEEEEeccC
Confidence 33333333456666664 77778888877777766663 3333 3344599999999999843
No 212
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=35.13 E-value=76 Score=24.42 Aligned_cols=45 Identities=11% Similarity=0.288 Sum_probs=31.6
Q ss_pred CHHHHHHHHHhcCCeEeecCCC-C-cc----ceEEEEECCCCCEEEEEecC
Q 030857 117 DVYKACERFERLGVEFAKKPDG-G-KL----KGVAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 117 di~~~~~~l~~~G~~~~~~~~~-~-~~----~~~~~~~DPdG~~iel~~~~ 161 (170)
..+++.+-+++..+-+...|.+ + .+ .-++|+.||+|..+...-+.
T Consensus 211 T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 211 TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence 4566677777777777765543 2 22 34789999999999988655
No 213
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.21 E-value=78 Score=18.28 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=20.0
Q ss_pred CceEEEEEeC---CHHHHHHHHHhcCCeE
Q 030857 107 GFGHIGITVD---DVYKACERFERLGVEF 132 (170)
Q Consensus 107 g~~hl~f~v~---di~~~~~~l~~~G~~~ 132 (170)
+..++.+.+. +++++.+.|+++|+++
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 3356777775 4888899999999865
No 214
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=33.95 E-value=74 Score=24.52 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=26.8
Q ss_pred eCCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCC
Q 030857 115 VDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPD 151 (170)
Q Consensus 115 v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPd 151 (170)
++..+++++.++++|+.+..-+....+..++|.+||.
T Consensus 37 ~aQh~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~ 73 (267)
T COG1834 37 VAQHEALVEALEKNGVEVHLLPPIEGLPDQVFTRDPG 73 (267)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCcccCCCcceEeccce
Confidence 3456788899999999998655333334478889885
No 215
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=33.60 E-value=70 Score=20.88 Aligned_cols=34 Identities=6% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEecCc
Q 030857 119 YKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 162 (170)
Q Consensus 119 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 162 (170)
.++.+.|+++|++ .+++|+.+|.+.++..++...
T Consensus 27 PE~~a~lk~agi~----------nYSIfLde~~n~lFgy~E~~d 60 (105)
T COG3254 27 PELLALLKEAGIR----------NYSIFLDEEENLLFGYWEYED 60 (105)
T ss_pred HHHHHHHHHcCCc----------eeEEEecCCcccEEEEEEEcC
Confidence 4555666677763 346888889999999998873
No 216
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=33.18 E-value=37 Score=25.38 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 157 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel 157 (170)
.|-+.+++.+ .|+.+...+..++- ..+++.||||+-.-+
T Consensus 187 ~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 225 (228)
T PRK06704 187 ERPELLTKLL--PTIDFTKLPSKQPV-LLFNVKQPSSYSCML 225 (228)
T ss_pred cCHHHHHHHh--ccceeeecccccce-EEEEeeCCCccchhh
Confidence 3444455533 56666666544432 246689999986543
No 217
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.93 E-value=49 Score=18.93 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=16.9
Q ss_pred EEEEEe---CCHHHHHHHHHhcCCeE
Q 030857 110 HIGITV---DDVYKACERFERLGVEF 132 (170)
Q Consensus 110 hl~f~v---~di~~~~~~l~~~G~~~ 132 (170)
.+.+.+ +|.+.+.+.|+++|+++
T Consensus 44 ~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 44 ILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 344555 46889999999999853
No 218
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=32.74 E-value=83 Score=22.20 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=27.4
Q ss_pred ceEEEEEeCCHHHHHHHHHhcCCeEeecCC---CCc----cceEEEEECCCCCEEEEEe
Q 030857 108 FGHIGITVDDVYKACERFERLGVEFAKKPD---GGK----LKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 108 ~~hl~f~v~di~~~~~~l~~~G~~~~~~~~---~~~----~~~~~~~~DPdG~~iel~~ 159 (170)
+..+.+..++++++.+. .++....... .+. +...+|+.||+|.+..+..
T Consensus 117 ~~~ltg~~~~i~~l~~~---~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 117 FIGLTGSREEIEELAKQ---FGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp CEEEEEEHHHHHHHHHH---CTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred cceeEeCHHHHHHHHHH---HHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 44556666566665554 4444432211 111 2347899999999988764
No 219
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.61 E-value=80 Score=17.68 Aligned_cols=24 Identities=4% Similarity=0.183 Sum_probs=17.1
Q ss_pred EEEEEeCC---HHHHHHHHHhcCCeEe
Q 030857 110 HIGITVDD---VYKACERFERLGVEFA 133 (170)
Q Consensus 110 hl~f~v~d---i~~~~~~l~~~G~~~~ 133 (170)
++.+.+.+ ++.+.+.|++.|+++.
T Consensus 46 ~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 46 ELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 44455544 5688999999998764
No 220
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=32.26 E-value=73 Score=17.48 Aligned_cols=15 Identities=20% Similarity=0.036 Sum_probs=11.7
Q ss_pred EEEEECCCCCEEEEE
Q 030857 144 VAFIKDPDDYWIEIF 158 (170)
Q Consensus 144 ~~~~~DPdG~~iel~ 158 (170)
...+.||||..+.|-
T Consensus 30 sY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEECCCCCEEEEE
Confidence 455689999988775
No 221
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=31.57 E-value=1.6e+02 Score=24.27 Aligned_cols=48 Identities=27% Similarity=0.213 Sum_probs=29.5
Q ss_pred CceEEEEEeCC--HHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEe
Q 030857 107 GFGHIGITVDD--VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 107 g~~hl~f~v~d--i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 159 (170)
|-..|.|.|.+ -..+++.++++|+.++.-...-+++ .||....|+|.-
T Consensus 345 GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg-----~DP~D~nIRiAP 394 (425)
T PF12897_consen 345 GGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPYG-----KDPRDSNIRIAP 394 (425)
T ss_dssp BSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG-------TTS-EEEE--
T ss_pred CceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCCC-----CCCCCCcEEecC
Confidence 33578888875 6778899999999887755444444 699999999864
No 222
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=31.20 E-value=39 Score=16.80 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=12.8
Q ss_pred eCChHHHHHHHHHhcCC
Q 030857 21 IKDPKVSLDFYSRVLGM 37 (170)
Q Consensus 21 v~d~~~s~~FY~~~lG~ 37 (170)
..|.++++.+|++.|.+
T Consensus 12 ~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 46889999999997643
No 223
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=31.10 E-value=1.2e+02 Score=21.70 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=19.5
Q ss_pred EEEEEeCCHHHHHHHHHhcCCeEeec
Q 030857 110 HIGITVDDVYKACERFERLGVEFAKK 135 (170)
Q Consensus 110 hl~f~v~di~~~~~~l~~~G~~~~~~ 135 (170)
-+.+..++.+++.+.|++.|.++...
T Consensus 46 Di~~~~~~~~~l~~~L~~~G~~ite~ 71 (174)
T PF10706_consen 46 DIFVPREDQAELRALLKELGYRITET 71 (174)
T ss_dssp EEEEEGGGHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEcchhHHHHHHHHHCCCEEEEe
Confidence 34555568899999999999988753
No 224
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=28.84 E-value=50 Score=25.90 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=22.9
Q ss_pred CceeeeEEEEEe------CChHHHHHHHHHhcCCEEe
Q 030857 10 NKRFPHFTMFRI------KDPKVSLDFYSRVLGMSLL 40 (170)
Q Consensus 10 ~~~~l~hv~i~v------~d~~~s~~FY~~~lG~~~~ 40 (170)
.+++++|+++.| .|++...++.++ .|+.+.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~-~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKE-RGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHH-TT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHH-cCCCcc
Confidence 567999999999 999999999977 799998
No 225
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=28.17 E-value=1.6e+02 Score=18.59 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=23.0
Q ss_pred CCCCceeeeEEEEEeCChHHHHHHHHHh
Q 030857 7 TSCNKRFPHFTMFRIKDPKVSLDFYSRV 34 (170)
Q Consensus 7 ~~~~~~~l~hv~i~v~d~~~s~~FY~~~ 34 (170)
|+..++.-..|.|...|.|+-...|+++
T Consensus 53 SSkGnY~svsI~i~A~~~EQ~e~ly~eL 80 (90)
T COG2921 53 SSKGNYLSVSITIRATNIEQVEALYREL 80 (90)
T ss_pred CCCCceEEEEEEEEECCHHHHHHHHHHH
Confidence 4455677788899999999999999874
No 226
>PF15121 TMEM71: TMEM71 protein family
Probab=27.90 E-value=65 Score=22.03 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=14.6
Q ss_pred HHHhcCCeEeecCCCCccceEEEEECCCCCEE
Q 030857 124 RFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 155 (170)
Q Consensus 124 ~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 155 (170)
+|..+|+-+..+- .|+.|.|||+-
T Consensus 63 RLLtNGYYi~TED--------SFl~D~dGNIT 86 (149)
T PF15121_consen 63 RLLTNGYYIWTED--------SFLCDEDGNIT 86 (149)
T ss_pred hhhcCccEEEecc--------ceeecCCCCEe
Confidence 4555555544433 56779999863
No 227
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=27.66 E-value=1.2e+02 Score=25.53 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=25.1
Q ss_pred HHHHHHhcCCeEeecC-CCCccceEEEEECCCCCEEE
Q 030857 121 ACERFERLGVEFAKKP-DGGKLKGVAFIKDPDDYWIE 156 (170)
Q Consensus 121 ~~~~l~~~G~~~~~~~-~~~~~~~~~~~~DPdG~~ie 156 (170)
+...|.++|++++--. .+-.+|+..-.+|+||+..|
T Consensus 15 ~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 15 AAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred HHHHHHhCCCceEEEeccCccCceeeeeecCCCCeee
Confidence 4567889999887433 22233556678999999987
No 228
>PRK14707 hypothetical protein; Provisional
Probab=26.48 E-value=1.3e+02 Score=30.54 Aligned_cols=44 Identities=11% Similarity=-0.059 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhcCCeEeecC--C----CCccceEEEEECCCCCEEEEEec
Q 030857 117 DVYKACERFERLGVEFAKKP--D----GGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 117 di~~~~~~l~~~G~~~~~~~--~----~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
.+..+...|.++|+..+... . ..+.|--+.++||+|+.|||.-.
T Consensus 2357 ~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQFH 2406 (2710)
T PRK14707 2357 GLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQFH 2406 (2710)
T ss_pred HHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEEec
Confidence 36677788899999887643 1 12223345679999999999743
No 229
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=26.06 E-value=99 Score=19.40 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCEEeEeeecCCcceE
Q 030857 27 SLDFYSRVLGMSLLKRLDFPEMKFS 51 (170)
Q Consensus 27 s~~FY~~~lG~~~~~~~~~~~~~~~ 51 (170)
+.+|+++-||+.+.....+.+..-.
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed~SC~ 73 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFEDFSCQ 73 (86)
T ss_pred hHHHHHhccCCceEecCCCcCcEEE
Confidence 3599999999999988665554433
No 230
>PTZ00056 glutathione peroxidase; Provisional
Probab=25.73 E-value=2.6e+02 Score=20.18 Aligned_cols=27 Identities=4% Similarity=0.153 Sum_probs=18.9
Q ss_pred CceEEEEEe--------CCHHHHHHHHHhcCCeEe
Q 030857 107 GFGHIGITV--------DDVYKACERFERLGVEFA 133 (170)
Q Consensus 107 g~~hl~f~v--------~di~~~~~~l~~~G~~~~ 133 (170)
++.-+++.+ ++.+++.+.+++.|+.+.
T Consensus 72 g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fp 106 (199)
T PTZ00056 72 GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYN 106 (199)
T ss_pred ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCce
Confidence 566777776 456778888888876543
No 231
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=25.07 E-value=45 Score=18.76 Aligned_cols=18 Identities=28% Similarity=0.539 Sum_probs=14.2
Q ss_pred EeCChHHHHHHHHHhcCC
Q 030857 20 RIKDPKVSLDFYSRVLGM 37 (170)
Q Consensus 20 ~v~d~~~s~~FY~~~lG~ 37 (170)
..+.+...++||++.|-|
T Consensus 36 ~~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 36 NVKCPLLVISFYEEHLTY 53 (54)
T ss_pred HhhCcHHHHHHHHHhccc
Confidence 346888999999998754
No 232
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=24.79 E-value=97 Score=19.40 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=22.4
Q ss_pred CceEEEEEeCC---HHHHHHHHHhcCCeEeecC
Q 030857 107 GFGHIGITVDD---VYKACERFERLGVEFAKKP 136 (170)
Q Consensus 107 g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~ 136 (170)
+...++|.|++ ++++.++|++.|+++....
T Consensus 50 a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dls 82 (91)
T PF00585_consen 50 ARVLVGIEVPDAEDLEELIERLKALGYPYEDLS 82 (91)
T ss_dssp SEEEEEEE-SSTHHHHHHHHHHTSSS-EEECTT
T ss_pred eeEEEEEEeCCHHHHHHHHHHHHHcCCCeEECC
Confidence 56788899974 6789999999999876543
No 233
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=24.71 E-value=1.1e+02 Score=20.01 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.4
Q ss_pred eEEEEEeCChHHHHHHHHHhc
Q 030857 15 HFTMFRIKDPKVSLDFYSRVL 35 (170)
Q Consensus 15 ~hv~i~v~d~~~s~~FY~~~l 35 (170)
..++|.-.|.++|.+||..+.
T Consensus 82 c~~GL~Fade~EA~~F~k~v~ 102 (105)
T cd01205 82 CVVGLNFADETEAAEFRKKVL 102 (105)
T ss_pred cEEEEEECCHHHHHHHHHHHH
Confidence 478999999999999998763
No 234
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=24.44 E-value=95 Score=17.96 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=14.7
Q ss_pred eeEEEEEeC-ChHHHHHHHHHhcCCE
Q 030857 14 PHFTMFRIK-DPKVSLDFYSRVLGMS 38 (170)
Q Consensus 14 l~hv~i~v~-d~~~s~~FY~~~lG~~ 38 (170)
...+.+.|. +=..+.+||++ +||+
T Consensus 59 ~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 59 IKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp ESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred ccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 444555554 34458999976 7875
No 235
>smart00300 ChSh Chromo Shadow Domain.
Probab=24.35 E-value=48 Score=19.15 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=14.4
Q ss_pred eCChHHHHHHHHHhcCCE
Q 030857 21 IKDPKVSLDFYSRVLGMS 38 (170)
Q Consensus 21 v~d~~~s~~FY~~~lG~~ 38 (170)
.+.+...++||++.|-|+
T Consensus 43 ~k~P~~vI~FYE~~l~~~ 60 (61)
T smart00300 43 VKCPQKVIRFYESHLTFQ 60 (61)
T ss_pred HHChHHHHHHHHHhCccC
Confidence 457889999999987653
No 236
>PHA00450 host dGTPase inhibitor
Probab=24.17 E-value=1.9e+02 Score=17.95 Aligned_cols=43 Identities=14% Similarity=-0.083 Sum_probs=30.4
Q ss_pred CHHHHHHHHHhcCCeEeecCCCC----ccceEEEEECCCCCEEEEEe
Q 030857 117 DVYKACERFERLGVEFAKKPDGG----KLKGVAFIKDPDDYWIEIFD 159 (170)
Q Consensus 117 di~~~~~~l~~~G~~~~~~~~~~----~~~~~~~~~DPdG~~iel~~ 159 (170)
++.++.++|.+..+.+..+.... .....+.+.|-+|++|--..
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~t 57 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASRT 57 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeeee
Confidence 57888999999988887654321 12335678899999987543
No 237
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=24.06 E-value=1.6e+02 Score=17.30 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=23.2
Q ss_pred CHHHHHHHHHhcCCeEee---cCCCCccceEEEEECCCC
Q 030857 117 DVYKACERFERLGVEFAK---KPDGGKLKGVAFIKDPDD 152 (170)
Q Consensus 117 di~~~~~~l~~~G~~~~~---~~~~~~~~~~~~~~DPdG 152 (170)
.+-.+.+.+.++|+.++. .|.....+...|+.|-+|
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 377888999999998874 443332222345557666
No 238
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=23.89 E-value=1.3e+02 Score=19.25 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEE
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 157 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel 157 (170)
.|++++..+|...|... .+.|++|+.-||
T Consensus 21 ~d~~~L~~~lt~~GF~~-------------tl~D~~G~~HeL 49 (96)
T PF11080_consen 21 TDINELNNHLTRAGFST-------------TLTDEDGNPHEL 49 (96)
T ss_pred HHHHHHHHHHHhcCcee-------------EEecCCCCEeec
Confidence 47899999999998743 345666665554
No 239
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=23.65 E-value=68 Score=15.29 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.5
Q ss_pred eCChHHHHHHHHHh
Q 030857 21 IKDPKVSLDFYSRV 34 (170)
Q Consensus 21 v~d~~~s~~FY~~~ 34 (170)
-+|.+++..||++.
T Consensus 18 ~~d~~~A~~~~~~A 31 (36)
T smart00671 18 KKDLEKALEYYKKA 31 (36)
T ss_pred CcCHHHHHHHHHHH
Confidence 36999999999864
No 240
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=23.52 E-value=2e+02 Score=17.98 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhcCCeEeecCCC-C---ccceEEEEECCCCCEEE
Q 030857 116 DDVYKACERFERLGVEFAKKPDG-G---KLKGVAFIKDPDDYWIE 156 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~-~---~~~~~~~~~DPdG~~ie 156 (170)
.++.++.+++.+..+.+..+... + .....+-+.|-.|++|-
T Consensus 10 nafKaA~~Rl~~lD~~V~~e~~~~~~~~~~~~~Lrv~dr~G~~v~ 54 (85)
T PF10922_consen 10 NAFKAATDRLYELDFAVISEEFYYSNPAKMCMVLRVEDRSGNSVF 54 (85)
T ss_pred HHHHHHHHHHhhCcEEEEEEeeccccchhhEEEEEEEecCCCEee
Confidence 36788899999998877765532 1 12235668899999983
No 241
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=23.47 E-value=85 Score=23.33 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=11.7
Q ss_pred CCccceEEEEECCCCCE
Q 030857 138 GGKLKGVAFIKDPDDYW 154 (170)
Q Consensus 138 ~~~~~~~~~~~DPdG~~ 154 (170)
+..+|.++|-.||.||.
T Consensus 140 d~~~gyqLy~SdPSGny 156 (249)
T KOG0178|consen 140 DDRYGYQLYQSDPSGNY 156 (249)
T ss_pred ecCcceEEEecCCCCCc
Confidence 33446678888888874
No 242
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=23.42 E-value=1.7e+02 Score=19.50 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=20.9
Q ss_pred eeeEEEEEeC-ChHHHHHHHHHhcCCEEeEee
Q 030857 13 FPHFTMFRIK-DPKVSLDFYSRVLGMSLLKRL 43 (170)
Q Consensus 13 ~l~hv~i~v~-d~~~s~~FY~~~lG~~~~~~~ 43 (170)
+++.+.+.|. +=+.|.+||++ +||+.....
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~ 142 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTG 142 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeec
Confidence 4456666653 44578999965 899987763
No 243
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=22.89 E-value=1.2e+02 Score=20.25 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=29.4
Q ss_pred EeCCHHHHHHHHHhcCCeEeecCCCCcc--ce-EEEEECCCCCEEEEEe
Q 030857 114 TVDDVYKACERFERLGVEFAKKPDGGKL--KG-VAFIKDPDDYWIEIFD 159 (170)
Q Consensus 114 ~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~-~~~~~DPdG~~iel~~ 159 (170)
.+.+++..+++|...|- +.-.-..+.+ +. .++..|.+|.+++-..
T Consensus 23 Qik~Fn~~~~~L~~~G~-V~iGr~~grf~~g~IvllaiD~~~~I~d~~~ 70 (118)
T PRK10234 23 QISRFNRAFDTLCQQGR-VGVGRSSGRFKPRVVVALALDEQQRVVDTLF 70 (118)
T ss_pred HHHHHHHHHHHHHhcCc-eEEecccCccCCCeEEEEEECCCCcEEeeEE
Confidence 44678889999999985 3322222332 22 5577899999998543
No 244
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=22.56 E-value=1.5e+02 Score=20.85 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEeCCHHHHHHHHHhcCCeEee
Q 030857 111 IGITVDDVYKACERFERLGVEFAK 134 (170)
Q Consensus 111 l~f~v~di~~~~~~l~~~G~~~~~ 134 (170)
+=|.+.|++.+.++|++.|.....
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~ 29 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIK 29 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCccccc
Confidence 457788999999999999876443
No 245
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=22.36 E-value=62 Score=18.55 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=13.3
Q ss_pred CChHHHHHHHHHhcCCE
Q 030857 22 KDPKVSLDFYSRVLGMS 38 (170)
Q Consensus 22 ~d~~~s~~FY~~~lG~~ 38 (170)
+-++..++||++.|-|+
T Consensus 41 k~Pq~vI~FYE~~l~f~ 57 (58)
T PF01393_consen 41 KCPQKVIKFYESHLVFK 57 (58)
T ss_dssp HSHHHHHHHHHHTCEEE
T ss_pred HCcHHHHHHHHHHeeec
Confidence 35778899999987664
No 246
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.21 E-value=1.8e+02 Score=20.57 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=24.2
Q ss_pred CceEEEEEeC--CHHHHHHHHHhcCCeEeec
Q 030857 107 GFGHIGITVD--DVYKACERFERLGVEFAKK 135 (170)
Q Consensus 107 g~~hl~f~v~--di~~~~~~l~~~G~~~~~~ 135 (170)
.+.++++... |+..+.+++++.|.++...
T Consensus 105 ~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~ 135 (160)
T TIGR00288 105 NIDAVALVTRDADFLPVINKAKENGKETIVI 135 (160)
T ss_pred CCCEEEEEeccHhHHHHHHHHHHCCCEEEEE
Confidence 4568888886 6999999999999998753
No 247
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=22.10 E-value=2.9e+02 Score=19.46 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCeEeecCC----C-CccceEEEEEC-CCCCEEEEEec
Q 030857 118 VYKACERFERLGVEFAKKPD----G-GKLKGVAFIKD-PDDYWIEIFDL 160 (170)
Q Consensus 118 i~~~~~~l~~~G~~~~~~~~----~-~~~~~~~~~~D-PdG~~iel~~~ 160 (170)
+.++.+++++.|+++..-.. . ........++| ++|..+.|.|.
T Consensus 16 L~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~ 64 (159)
T PF10649_consen 16 LAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQD 64 (159)
T ss_pred HHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeec
Confidence 56677999999999975321 1 11112355666 78999999886
No 248
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=22.10 E-value=1.2e+02 Score=17.21 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=12.3
Q ss_pred EEEEECCCCCEEEEEecC
Q 030857 144 VAFIKDPDDYWIEIFDLK 161 (170)
Q Consensus 144 ~~~~~DPdG~~iel~~~~ 161 (170)
.++|+|.+|+.+.+--+.
T Consensus 11 ~F~FYDen~~lVrv~vrD 28 (54)
T PF12142_consen 11 SFLFYDENGQLVRVKVRD 28 (54)
T ss_dssp EEEEE-TTS-EEEEEGGG
T ss_pred eeEEECCCCCEEEEEhhh
Confidence 467789999999986554
No 249
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=21.61 E-value=1.7e+02 Score=19.92 Aligned_cols=28 Identities=14% Similarity=0.454 Sum_probs=21.2
Q ss_pred eEEEEEeC-ChHHHHHHHHHhcCCEEeEee
Q 030857 15 HFTMFRIK-DPKVSLDFYSRVLGMSLLKRL 43 (170)
Q Consensus 15 ~hv~i~v~-d~~~s~~FY~~~lG~~~~~~~ 43 (170)
..+.+.|+ +=+.++.||++ +||+.....
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~ 155 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIR 155 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeee
Confidence 45666665 44499999988 899998764
No 250
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=21.38 E-value=75 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCEE
Q 030857 25 KVSLDFYSRVLGMSL 39 (170)
Q Consensus 25 ~~s~~FY~~~lG~~~ 39 (170)
+.+.+||++ +||++
T Consensus 66 ~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 66 PAAIKFYEK-LGFEE 79 (79)
T ss_dssp HHHHHHHHH-TTEEE
T ss_pred HHHHHHHHH-CcCCC
Confidence 689999977 79874
No 251
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=21.15 E-value=2.6e+02 Score=21.21 Aligned_cols=42 Identities=12% Similarity=-0.061 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCeEeecCCCCccceEEEEECCCCCEEEEEec
Q 030857 119 YKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 160 (170)
Q Consensus 119 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 160 (170)
+.+.+.|++.|+..............+++.|++|....+...
T Consensus 64 ~~i~~~l~~~gI~~~~i~~~~~t~~~~~~~~~~g~~~~~~~~ 105 (303)
T TIGR03168 64 EFIEALLAEEGIKNDFVEVKGETRINVKIKESSGEETELNEP 105 (303)
T ss_pred HHHHHHHHHcCCCceEEECCCCCEEeEEEEeCCCCEEEEeCc
Confidence 556789999999876543332222345667888987776543
No 252
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=21.11 E-value=2e+02 Score=22.29 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=30.2
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCeEeecCCCCccceEEE--EECCCCCEEEEEecC
Q 030857 107 GFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAF--IKDPDDYWIEIFDLK 161 (170)
Q Consensus 107 g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~DPdG~~iel~~~~ 161 (170)
|.-|+.+.|+|++. ..+...|-.+...+.-.......| +.+++-..+.++|++
T Consensus 154 GnPH~V~~Vddv~~--~~~~~~g~~l~~h~~Fp~~vNV~F~~v~~~~~i~vrv~ERG 208 (272)
T COG0253 154 GNPHLVIFVDDVET--ANLEELGPLLESHELFPEGVNVGFVQVLSRDAIRLRVYERG 208 (272)
T ss_pred CCCeEEEEeCCccc--chhhhhhhhhhcCccCCCceEEEEEEeCCCCcEEEEEeecC
Confidence 55799999998777 223333322222221111122333 557788889999987
No 253
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.54 E-value=85 Score=20.54 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=10.8
Q ss_pred EEEEECCCCCEEE
Q 030857 144 VAFIKDPDDYWIE 156 (170)
Q Consensus 144 ~~~~~DPdG~~ie 156 (170)
.+.++|+||++|-
T Consensus 20 RARlyd~dG~Ll~ 32 (112)
T PF13756_consen 20 RARLYDPDGNLLA 32 (112)
T ss_pred eEEEECCCCCEEe
Confidence 3778899999885
No 254
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=20.44 E-value=56 Score=20.24 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCCccceEEEEECCC-CCEEEEEec
Q 030857 116 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPD-DYWIEIFDL 160 (170)
Q Consensus 116 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPd-G~~iel~~~ 160 (170)
.|.......+++.++++..-..+. .|+.-|+ |..++++.+
T Consensus 40 ~dv~r~~~~~~~~~vpilGvVENM-----s~~~Cp~Cg~~~~iFg~ 80 (81)
T PF10609_consen 40 ADVRRAIDMFRKLNVPILGVVENM-----SYFVCPHCGERIYIFGK 80 (81)
T ss_dssp HHHHHHHHHHHCTT-EEEEEEECT------EEE-TTT--EEETTTT
T ss_pred HHHHHHHHHHHhcCCCcEEEEECC-----CccCCCCCCCeecCCCC
Confidence 467888899999999998877554 3445666 888777544
Done!