BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030859
         (170 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
          Enzyme Wbmh In Complex With Nad+
 pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
          Enzyme Wbmh In Complex With Nad+
 pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica
          Enzyme Wbmh In Complex With Nad+
          Length = 333

 Score = 32.0 bits (71), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 49 GSKNAYPLLKRIKKA---DRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGG 99
          GS  A  LL+R  K    D FATG REH++  P +T  V+G ++  A + Q+ G
Sbjct: 34 GSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLT-FVEGSIADHALVNQLIG 86


>pdb|3FIR|A Chain A, Crystal Structure Of Glycosylated K135e Peb3
 pdb|3FIR|B Chain B, Crystal Structure Of Glycosylated K135e Peb3
          Length = 251

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 18/127 (14%)

Query: 45  SPANGSKNAY------PLLKRIKKADRFATGVREHVRLGPKITEIVKGK----LSLGARI 94
           S AN   N Y        LK I       TGV+ +V  GP+ T   K K    +  GA  
Sbjct: 16  SMANADVNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASD 75

Query: 95  IQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGP--IAGLLFISTEKIAFCSERSIKI 152
                +   F K FNV++ + L       L+    P  I GL  ++ +K+       I +
Sbjct: 76  QSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNPLKIKGLKDLANKKV------RIVV 129

Query: 153 PSPNGES 159
           P   GES
Sbjct: 130 PEGAGES 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,838,747
Number of Sequences: 62578
Number of extensions: 185286
Number of successful extensions: 343
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 6
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)