BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030859
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1
Length = 222
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 113/153 (73%), Gaps = 6/153 (3%)
Query: 19 KYPV-KNSPMRFLPEVPDESGGKQIVPSPANGSK--NAYPLLKRIKKADRFATGVREHVR 75
+YP K +P+ +LP+ S K VP+ + S+ N +LKR KK D F GVR+ +
Sbjct: 12 RYPAAKATPVGYLPD--PASFNKFRVPASSKKSEQSNVKSILKR-KKTDGFTNGVRDQSK 68
Query: 76 LGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLL 135
+ PK+TE VK KLSLGARI+QVGG+ K+FK+LF V+EGE+L K QCYLSTTAGPIAGLL
Sbjct: 69 IRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLL 128
Query: 136 FISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
FIS++K+AFCSERSIK+ SP G+ R+HYKV I
Sbjct: 129 FISSKKMAFCSERSIKVDSPQGDIIRVHYKVSI 161
>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370
PE=3 SV=1
Length = 219
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 106/149 (71%), Gaps = 4/149 (2%)
Query: 22 VKNSPMRFLPEVPDESGGKQIVPSPANGS--KNAYPLLKRIKKADRFATGVREHVRLGPK 79
VK SP +LP+ S K +P+ + S + R KK D F GVR+ +LGPK
Sbjct: 16 VKTSPAGYLPD--PASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQDKLGPK 73
Query: 80 ITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFIST 139
+TE VK KLSLGARI+Q+GG+ K++K+LF V++ E+L K QCYLSTTAGPIAGLLFIS+
Sbjct: 74 LTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISS 133
Query: 140 EKIAFCSERSIKIPSPNGESARIHYKVII 168
+KIAFCSERSIK+ SP GE R+HYKV I
Sbjct: 134 KKIAFCSERSIKVASPQGELNRVHYKVSI 162
>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2
Length = 218
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 103/152 (67%), Gaps = 10/152 (6%)
Query: 22 VKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLK-----RIKKADRFATGVREHVRL 76
K M +LP+ P QI S SK +Y K R KK D F G R+ +L
Sbjct: 16 AKTDTMSYLPD-PASINNHQIPTS----SKVSYLTGKGKSMLRKKKTDSFTNGARDQDKL 70
Query: 77 GPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLF 136
GPK+TE VK KLSLGA+I+Q+GG+ K++K+LF V + E+L K QCYLSTTAGPIAGLLF
Sbjct: 71 GPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLF 130
Query: 137 ISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
IS++KIAFCSERSIK+ SP G +R+HYKV I
Sbjct: 131 ISSKKIAFCSERSIKVASPQGVLSRVHYKVSI 162
>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1
Length = 210
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 95/131 (72%), Gaps = 5/131 (3%)
Query: 43 VPSPANGSKNAYPLLKRI-----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQV 97
+P PA+ +K P ++ KK D F G R+ +LGPK+TE VK KLSLGA+I+Q+
Sbjct: 24 LPDPASINKLQIPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQM 83
Query: 98 GGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNG 157
GG+ K++K+LF V + E+L K QCYLSTT G IAGLLFIS++KIAFCSERSIK+ SP G
Sbjct: 84 GGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQG 143
Query: 158 ESARIHYKVII 168
+ R+HYKV I
Sbjct: 144 DLTRVHYKVSI 154
>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1
Length = 272
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 70/108 (64%)
Query: 61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
+KA+ A + +++ GP ++E GK++L A+ I GG +F+++F E L KT
Sbjct: 102 RKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTF 161
Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
CYLSTT GP+AG +++S ++AFCS+R + +P+G+ + +Y+V++
Sbjct: 162 ACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVV 209
>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1
Length = 233
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
+KA+ G+++H++ P I++ +LS G ++I GG +VF++ F V E+LL +
Sbjct: 65 RKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSF 124
Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIP-SPNGESARIHYKVIIFY 170
CY+STT+GP+ G+++IS +IAFCS+ +I++P S G +YKV++ +
Sbjct: 125 VCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEW 175
>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1
Length = 259
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 60 IKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKT 119
KKA+ A +H++ GP + + +++ G +I+ GG KVFK+ F+ E+LLKT
Sbjct: 96 TKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKT 155
Query: 120 CQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARI-HYKVII 168
CYLST+AGP+ G++++ST K+AF S+ + GE +YKV++
Sbjct: 156 YACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY--KEGEQTLWSYYKVVL 203
>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1
SV=1
Length = 299
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
KK + A +H+R P + G+++ ++ GG K+F++ F E+LL +
Sbjct: 134 KKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSF 193
Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARI-HYKVII 168
CYLST+AGP+ G+L+IS+ K+A+CS+ + NG+ +YKV+I
Sbjct: 194 ACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY--KNGDQTEWSYYKVVI 240
>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100
PE=3 SV=2
Length = 239
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 46/67 (68%)
Query: 86 GKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFC 145
G+++ +++ GG K+F++ F E+L + CYLST+AGP+ G+L++ST K+A+C
Sbjct: 112 GRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYC 171
Query: 146 SERSIKI 152
S+ S+ +
Sbjct: 172 SDTSLVV 178
>sp|Q1DLP2|MYO1_COCIM Myosin-1 OS=Coccidioides immitis (strain RS) GN=MYO1 PE=3 SV=1
Length = 1251
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 59 RIKKADRFATGVREHVRLGPKITEIVKGKLS------LGAR--------IIQVGGMGKVF 104
RI++ R TG E ++L + +I+ G+ +G+R I G MG V
Sbjct: 754 RIQRFWRRVTGGLEFIKLRDQGHKILGGRKERRRYSLVGSRRFLGDYLGISNAGDMGDVI 813
Query: 105 KKLFNVAEGERLLKTCQCYLSTT 127
K N++ GE +L +C+C L T
Sbjct: 814 KSSINISSGENILYSCRCELLVT 836
>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis
thaliana GN=At5g50170 PE=2 SV=1
Length = 1027
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 104 FKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCS 146
F+KLF + E LLK CYL P+ G LF+S +AF S
Sbjct: 694 FQKLFGLPHEEFLLKEYTCYLKRKL-PVQGKLFLSARIVAFYS 735
>sp|Q8CJT1|RPOC_STRCO DNA-directed RNA polymerase subunit beta' OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=rpoC PE=3 SV=1
Length = 1299
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 16/78 (20%)
Query: 40 KQIVPSPANGS-KNAYPLLKRIKKADRFATGVREHVRLGPKIT-------EIVKGKLSLG 91
K+IV +P +GS + A+P+ KR R G +HV +G K+T ++++ LG
Sbjct: 1057 KKIVVTPDDGSDETAFPISKRA----RLLVGEGDHVEVGQKLTVGATNPHDVLR---ILG 1109
Query: 92 ARIIQVGGMGKVFKKLFN 109
R +QV +G+V +K++N
Sbjct: 1110 QRAVQVHLVGEV-QKVYN 1126
>sp|A4VJ40|COBQ_PSEU5 Cobyric acid synthase OS=Pseudomonas stutzeri (strain A1501)
GN=cobQ PE=3 SV=1
Length = 485
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 25 SPMRFLPEVPDE-SGGKQIVPSPA----NGSKNAYPLLKRIKKADRFATGVREHVRLGPK 79
P+R P+V + G Q VPS GSK+ L ++ A+ + +++H+R G K
Sbjct: 266 DPLRLHPQVDLQFVGPGQPVPSADLIILPGSKSVRADLAWLR-ANGWEAAIQKHLRYGGK 324
Query: 80 ITEIVKGKLSLGARIIQVGGM--------GKVFKKLFNVAEGERLLKTCQCYLSTTAGPI 131
+ I G LG RI G+ G V E ++ L+ Q L A P+
Sbjct: 325 LLGICGGLQMLGTRIADPLGLEGPAGESAGLGLLDFATVLEADKQLRNVQGRLLPEAVPV 384
Query: 132 AG 133
G
Sbjct: 385 TG 386
>sp|Q6C8M8|ATG26_YARLI Sterol 3-beta-glucosyltransferase OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=ATG26 PE=3 SV=3
Length = 1456
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 104 FKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCS 146
F+K F + ERL+ + C+L P G +++ST + F S
Sbjct: 829 FQKRFALGTEERLIASYHCHLHRGGIPTYGKMYVSTNYVTFRS 871
>sp|C1DPP2|COBQ_AZOVD Cobyric acid synthase OS=Azotobacter vinelandii (strain DJ / ATCC
BAA-1303) GN=cobQ PE=3 SV=1
Length = 485
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 25 SPMRFLPEVPDE-SGGKQIVPSPAN-----GSKNAYPLLKRIKKADRFATGVREHVRLGP 78
P+R P+V G Q +P PA+ GSK+ L +++ + +R H+R G
Sbjct: 266 DPLRLHPQVDLVFVGPGQRIP-PADLIVLPGSKSVRSDLAFLREQG-WEAAIRRHLRYGG 323
Query: 79 KITEIVKGKLSLGARIIQVGGM--------GKVFKKLFNVAEGERLLKTCQCYLSTTAGP 130
K+ I G LG RI G+ G + V E E+ L+ + L+ P
Sbjct: 324 KLLGICGGLQMLGGRIADPLGLEGAPGESRGLGLLDIDTVLEAEKQLRNVRGRLALEGAP 383
Query: 131 IAG 133
++G
Sbjct: 384 VSG 386
>sp|A1TSK3|IF2_ACIAC Translation initiation factor IF-2 OS=Acidovorax citrulli (strain
AAC00-1) GN=infB PE=3 SV=1
Length = 943
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 22 VKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKIT 81
+K SP L ++ +G + PS A + LL ++ + ATG R + L K T
Sbjct: 13 LKKSPETLLDQL-KSAGVSKAAPSDALTESDKQKLLAFLQASHGTATGDRRKITLTKKST 71
Query: 82 EIVKGKLSLG-ARIIQVGGMGK-VFKKLFNVAEGE 114
+K + G AR IQV K F K +V EGE
Sbjct: 72 SEIKQADATGKARTIQVEVRKKRTFIKRDDVVEGE 106
>sp|Q9RXR4|SPEA_DEIRA Biosynthetic arginine decarboxylase OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=speA PE=3
SV=1
Length = 662
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 35 DESGGKQIVPSPANGSKNAYPLLK---RIKKADRFATGVREHVRLGPKITEIVKGKLSL 90
+ESGG Q A NAY LL+ R+K+ + + V H +G +IT+I + K+++
Sbjct: 235 EESGGDQ-----AKFGLNAYELLRVVERLKEENMLDSLVMLHTHIGSQITDIRRVKVAV 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,256,886
Number of Sequences: 539616
Number of extensions: 2478619
Number of successful extensions: 5480
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5468
Number of HSP's gapped (non-prelim): 17
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)