Query 030859
Match_columns 170
No_of_seqs 110 out of 131
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 05:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02893 GRAM: GRAM domain; I 99.0 2.1E-10 4.6E-15 77.8 3.9 48 103-150 2-49 (69)
2 smart00568 GRAM domain in gluc 98.8 1.3E-08 2.9E-13 67.5 5.1 40 110-150 2-41 (61)
3 PF14470 bPH_3: Bacterial PH d 89.8 0.68 1.5E-05 32.0 4.3 38 111-148 2-39 (96)
4 PF08498 Sterol_MT_C: Sterol m 70.7 1.1 2.3E-05 32.3 -0.6 54 55-108 6-59 (67)
5 PF09890 DUF2117: Uncharacteri 52.3 11 0.00024 32.6 2.3 64 58-134 48-114 (215)
6 PF14844 PH_BEACH: PH domain a 49.4 26 0.00056 25.3 3.5 33 115-147 1-33 (106)
7 KOG2415 Electron transfer flav 47.6 9.4 0.0002 37.2 1.2 50 72-124 345-396 (621)
8 PF05553 DUF761: Cotton fibre 32.9 15 0.00032 23.9 0.1 20 58-77 4-23 (38)
9 cd01178 IPT_NFAT IPT domain of 31.3 58 0.0013 25.2 3.1 40 121-162 4-47 (101)
10 PF07676 PD40: WD40-like Beta 29.1 33 0.00072 20.3 1.2 11 139-149 20-30 (39)
11 CHL00129 rpl1 ribosomal protei 28.5 61 0.0013 27.8 3.0 48 55-131 173-220 (229)
12 KOG3294 WW domain binding prot 27.3 49 0.0011 29.7 2.3 21 129-149 45-65 (261)
13 PRK15428 putative propanediol 27.0 43 0.00093 28.0 1.8 25 146-170 101-125 (163)
14 smart00564 PQQ beta-propeller 24.8 1.1E+02 0.0024 17.1 2.8 26 133-163 7-32 (33)
15 COG1098 VacB Predicted RNA bin 24.3 19 0.00041 29.2 -0.7 36 60-97 36-78 (129)
16 KOG4471 Phosphatidylinositol 3 22.5 87 0.0019 31.6 3.2 44 104-149 30-73 (717)
17 PF08348 PAS_6: YheO-like PAS 20.3 1.6E+02 0.0034 22.6 3.7 58 75-139 46-104 (118)
18 cd01208 X11 X11 Phosphotyrosin 20.2 2E+02 0.0043 24.0 4.4 25 134-158 53-88 (156)
No 1
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.04 E-value=2.1e-10 Score=77.82 Aligned_cols=48 Identities=33% Similarity=0.612 Sum_probs=32.1
Q ss_pred eeeeccccCcCceeeccceeeeecCccceeeEEEEeeceEEEeecCee
Q 030859 103 VFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSI 150 (170)
Q Consensus 103 vFkq~F~~~~~EkLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSdrpl 150 (170)
-|++.|...++|+|...+.|+|..+.+|+.|.||||+.+|.|+|+.+-
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~ 49 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFG 49 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSS
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCC
Confidence 589999999999999999999999999999999999999999997654
No 2
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=98.77 E-value=1.3e-08 Score=67.49 Aligned_cols=40 Identities=38% Similarity=0.719 Sum_probs=36.2
Q ss_pred cCcCceeeccceeeeecCccceeeEEEEeeceEEEeecCee
Q 030859 110 VAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSI 150 (170)
Q Consensus 110 ~~~~EkLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSdrpl 150 (170)
..++|+|...|.|+|+ +.+|+.|.||||+.++.|+|+.+-
T Consensus 2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~ 41 (61)
T smart00568 2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPG 41 (61)
T ss_pred cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCC
Confidence 4589999999999999 679999999999999999997554
No 3
>PF14470 bPH_3: Bacterial PH domain
Probab=89.85 E-value=0.68 Score=32.03 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=34.4
Q ss_pred CcCceeeccceeeeecCccceeeEEEEeeceEEEeecC
Q 030859 111 AEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSER 148 (170)
Q Consensus 111 ~~~EkLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSdr 148 (170)
.+||+.+-...|.+-...+.-.|+|+++++||-||+-.
T Consensus 2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~ 39 (96)
T PF14470_consen 2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKG 39 (96)
T ss_pred cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcc
Confidence 58999999999998877788899999999999999874
No 4
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=70.72 E-value=1.1 Score=32.32 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=48.7
Q ss_pred hhhhhccchhhhhhhhhhhcccCCChHHHHhhhhccceeeeeccCcceeeeecc
Q 030859 55 PLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLF 108 (170)
Q Consensus 55 ~~~~~~rKae~~a~~i~~hlk~gpsiset~~GkLslGaKil~~GG~ekvFkq~F 108 (170)
+++.++|..-...=++-|-+++.|+=+-.+.--|..+|.-|.+||-++||--.+
T Consensus 6 r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPMy 59 (67)
T PF08498_consen 6 RMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPMY 59 (67)
T ss_pred eccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCchh
Confidence 788899988888888999999999999999999999999999999999996543
No 5
>PF09890 DUF2117: Uncharacterized protein conserved in archaea (DUF2117); InterPro: IPR012032 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.27 E-value=11 Score=32.60 Aligned_cols=64 Identities=30% Similarity=0.412 Sum_probs=43.0
Q ss_pred hhccch---hhhhhhhhhhcccCCChHHHHhhhhccceeeeeccCcceeeeeccccCcCceeeccceeeeecCccceeeE
Q 030859 58 KRIKKA---DRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGL 134 (170)
Q Consensus 58 ~~~rKa---e~~a~~i~~hlk~gpsiset~~GkLslGaKil~~GG~ekvFkq~F~~~~~EkLlKa~~CYLSTtaGPvaG~ 134 (170)
-|.+++ +.+|..+.+||.+-.+-. ++--++.+...- +|+ .++||...+|.|||.+. =-|=|.|.
T Consensus 48 ~Wn~~~~~~~~~a~~Ls~~l~l~i~~p--~~~~i~~~~~~~-~~~-~~v~R~i~Gv~pGE~I~---------VNGiVIG~ 114 (215)
T PF09890_consen 48 PWNKKAEEVEPIAEKLSELLGLKIVRP--VENPISSGENCW-EGK-GRVFRKISGVSPGENIF---------VNGIVIGR 114 (215)
T ss_pred eccccccchHHHHHHHHHHhCCCccCc--ccccccCccccc-cCC-ceEEEEEeccCCCCCEE---------EeeEEEEE
Confidence 355666 899999999988742221 333344444333 333 78999999999999876 25666665
No 6
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=49.42 E-value=26 Score=25.30 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=27.2
Q ss_pred eeeccceeeeecCccceeeEEEEeeceEEEeec
Q 030859 115 RLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSE 147 (170)
Q Consensus 115 kLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSd 147 (170)
|++-++.|-+=|.-+-+-|.|.|.+..+-|..|
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~ 33 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPN 33 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE-
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEEC
Confidence 345678999999999999999999999999988
No 7
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=47.57 E-value=9.4 Score=37.23 Aligned_cols=50 Identities=26% Similarity=0.610 Sum_probs=38.3
Q ss_pred hhcccCCChHHHHhh--hhccceeeeeccCcceeeeeccccCcCceeeccceeee
Q 030859 72 EHVRLGPKITEIVKG--KLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYL 124 (170)
Q Consensus 72 ~hlk~gpsiset~~G--kLslGaKil~~GG~ekvFkq~F~~~~~EkLlKa~~CYL 124 (170)
+.+|.-|+|++...| +|.-|||.|-|||+..|=|-.| ||--|.-.++=+|
T Consensus 345 Qk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F---PGG~liGcSaGFl 396 (621)
T KOG2415|consen 345 QKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF---PGGALIGCSAGFL 396 (621)
T ss_pred HHhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc---CCceEeecccccc
Confidence 456667999999988 7899999999999999877655 5655655554443
No 8
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=32.95 E-value=15 Score=23.89 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.3
Q ss_pred hhccchhhhhhhhhhhcccC
Q 030859 58 KRIKKADRFATGVREHVRLG 77 (170)
Q Consensus 58 ~~~rKae~~a~~i~~hlk~g 77 (170)
..-++||.|..++++|+|+-
T Consensus 4 evd~rAe~FI~~f~~qlrlq 23 (38)
T PF05553_consen 4 EVDRRAEEFIAKFREQLRLQ 23 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999973
No 9
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=31.32 E-value=58 Score=25.19 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=33.6
Q ss_pred eeeeecCccceeeE--EEEeeceEEEeecCeeeee--CCCCCeeee
Q 030859 121 QCYLSTTAGPIAGL--LFISTEKIAFCSERSIKIP--SPNGESARI 162 (170)
Q Consensus 121 ~CYLSTtaGPvaG~--LfiSt~kvAFcSdrpl~~~--sp~G~~~~~ 162 (170)
.|=+|.++|+|.|- |||.-+|+ .-|--+.|. .++|+..|-
T Consensus 4 I~r~s~~s~sv~GG~Ev~Ll~~k~--~kDikV~F~E~~~dG~~~WE 47 (101)
T cd01178 4 IEKKSLNSCSVNGGEELFLTGKNF--LKDSKVVFQEKGQDGEAQWE 47 (101)
T ss_pred eEEeccCceeecCCCEEEEEehhc--CCCCEEEEEEeCCCCccceE
Confidence 58899999999995 89999996 569888887 678888884
No 10
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=29.11 E-value=33 Score=20.27 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=9.0
Q ss_pred eceEEEeecCe
Q 030859 139 TEKIAFCSERS 149 (170)
Q Consensus 139 t~kvAFcSdrp 149 (170)
.++|+|+|+|.
T Consensus 20 Gk~i~f~s~~~ 30 (39)
T PF07676_consen 20 GKYIYFTSNRN 30 (39)
T ss_dssp SSEEEEEEECT
T ss_pred CCEEEEEecCC
Confidence 36899999986
No 11
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=28.50 E-value=61 Score=27.78 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=28.7
Q ss_pred hhhhhccchhhhhhhhhhhcccCCChHHHHhhhhccceeeeeccCcceeeeeccccCcCceeeccceeeeecCccce
Q 030859 55 PLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPI 131 (170)
Q Consensus 55 ~~~~~~rKae~~a~~i~~hlk~gpsiset~~GkLslGaKil~~GG~ekvFkq~F~~~~~EkLlKa~~CYLSTtaGPv 131 (170)
.+.+.+-..|.++.|+.. +-+++..++..|.| | . ..| .||||||-||-
T Consensus 173 ~VG~~~m~~~~l~eNi~a-------~l~~i~~~~p~~~k----g---------------~-~ik--~v~issTMGp~ 220 (229)
T CHL00129 173 LFGKSNFTEEDLLENLQA-------IYESIEQNRPSGVK----G---------------K-YWK--SFYICSTMGPS 220 (229)
T ss_pred EEeCCCCCHHHHHHHHHH-------HHHHHHHhCccccc----C---------------c-eEE--EEEEECCCCCC
Confidence 344445556666666654 55666666555442 1 0 111 79999999994
No 12
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=27.26 E-value=49 Score=29.67 Aligned_cols=21 Identities=29% Similarity=0.668 Sum_probs=17.6
Q ss_pred cceeeEEEEeeceEEEeecCe
Q 030859 129 GPIAGLLFISTEKIAFCSERS 149 (170)
Q Consensus 129 GPvaG~LfiSt~kvAFcSdrp 149 (170)
|=--|+||+++.||-|-|+.+
T Consensus 45 g~kkGtlyLTs~RiIFis~~~ 65 (261)
T KOG3294|consen 45 GTKKGTLYLTSHRIIFISSKP 65 (261)
T ss_pred cceeeeEEeecceEEEecCCC
Confidence 445699999999999998874
No 13
>PRK15428 putative propanediol utilization protein PduM; Provisional
Probab=27.03 E-value=43 Score=27.96 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=22.5
Q ss_pred ecCeeeeeCCCCCeeeeEEEEEEeC
Q 030859 146 SERSIKIPSPNGESARIHYKVIIFY 170 (170)
Q Consensus 146 Sdrpl~~~sp~G~~~~~~YKV~I~~ 170 (170)
+|.||.|..+.|+.++.+|+=+|.|
T Consensus 101 ~~lPl~f~d~~g~~v~l~~~~vlsY 125 (163)
T PRK15428 101 ARLPLTFTDEQGQPVVLHAGSVLSY 125 (163)
T ss_pred hCCCeEEEcCCCCEEEEeCCceeeH
Confidence 6899999999999999999888765
No 14
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=24.76 E-value=1.1e+02 Score=17.09 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=14.7
Q ss_pred eEEEEeeceEEEeecCeeeeeCCCCCeeeeE
Q 030859 133 GLLFISTEKIAFCSERSIKIPSPNGESARIH 163 (170)
Q Consensus 133 G~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~ 163 (170)
|+||+.+.. .+=.++...+|+..|.+
T Consensus 7 ~~v~~~~~~-----g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTD-----GTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCC-----CEEEEEEcccCcEEEEc
Confidence 456655432 23335556688888863
No 15
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=24.30 E-value=19 Score=29.21 Aligned_cols=36 Identities=31% Similarity=0.631 Sum_probs=29.7
Q ss_pred ccchhhhhhhhhhhcccCCCh-------HHHHhhhhccceeeeec
Q 030859 60 IKKADRFATGVREHVRLGPKI-------TEIVKGKLSLGARIIQV 97 (170)
Q Consensus 60 ~rKae~~a~~i~~hlk~gpsi-------set~~GkLslGaKil~~ 97 (170)
+.=|++++.+|-+||+.|..+ .| .||++|--|-+++
T Consensus 36 SEIa~~fVkdI~d~L~vG~eV~vKVl~ide--~GKisLSIr~~~e 78 (129)
T COG1098 36 SEIADGFVKDIHDHLKVGQEVKVKVLDIDE--NGKISLSIRKLEE 78 (129)
T ss_pred hHhhhhhHHhHHHHhcCCCEEEEEEEeecc--CCCcceehHHhhh
Confidence 356789999999999999864 34 8999998887766
No 16
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.54 E-value=87 Score=31.57 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=33.6
Q ss_pred eeeccccCcCceeeccceeeeecCccceeeEEEEeeceEEEeecCe
Q 030859 104 FKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERS 149 (170)
Q Consensus 104 Fkq~F~~~~~EkLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSdrp 149 (170)
..--|...|||.+..-- |.--=-||+.|+|.||+-|+=|-|.-.
T Consensus 30 ~~~~~~~L~GE~i~~~~--y~c~f~G~~~g~l~lsNyRl~fks~~t 73 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEK--YICPFLGAVDGTLALSNYRLYFKSKET 73 (717)
T ss_pred ccCcccccCCcccccce--ecccccccccceEEeeeeEEEEEeccC
Confidence 35568889999883221 555557899999999999999988543
No 17
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=20.28 E-value=1.6e+02 Score=22.61 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=43.4
Q ss_pred ccCCChHHHHhhhhccceeeeeccC-cceeeeeccccCcCceeeccceeeeecCccceeeEEEEee
Q 030859 75 RLGPKITEIVKGKLSLGARIIQVGG-MGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFIST 139 (170)
Q Consensus 75 k~gpsiset~~GkLslGaKil~~GG-~ekvFkq~F~~~~~EkLlKa~~CYLSTtaGPvaG~LfiSt 139 (170)
+.|..++|.+.-.| ++.. -+..+...+...++-|++|++-.++--..|=+.|+|=|-.
T Consensus 46 ~vGdp~t~~~l~~l-------~~~~~~~~~~~nY~~~~~~Gk~lrSsT~~Ird~~g~~iG~LCIN~ 104 (118)
T PF08348_consen 46 KVGDPITDLALELL-------KEKQYEEDYIINYKTKTKDGKILRSSTFFIRDENGKLIGALCINF 104 (118)
T ss_pred ccCCchhHHHHHHH-------hccccCCCccccccccCCCCCEEEEEEEEEECCCCCEEEEEEEEe
Confidence 56777777655444 4433 3455666777888889999999999999999999997754
No 18
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=20.24 E-value=2e+02 Score=23.95 Aligned_cols=25 Identities=44% Similarity=0.522 Sum_probs=18.8
Q ss_pred EEEEeeceEEEeec-----------CeeeeeCCCCC
Q 030859 134 LLFISTEKIAFCSE-----------RSIKIPSPNGE 158 (170)
Q Consensus 134 ~LfiSt~kvAFcSd-----------rpl~~~sp~G~ 158 (170)
-|+|||++|+++.. |.|+|-+-.|.
T Consensus 53 ~L~IS~~gV~v~~~~tk~im~~h~L~~ISy~AD~~d 88 (156)
T cd01208 53 DLFISTEKIMVLNTDLQEIXMDHALRTISYIADIGD 88 (156)
T ss_pred EEEEEeCeEEEEecCccceeccCcccceEEEecCCC
Confidence 49999999999987 55677654444
Done!