Query 030859
Match_columns 170
No_of_seqs 110 out of 131
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 08:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 82.0 1.4 4.6E-05 40.7 4.6 40 108-147 7-48 (528)
2 1lw3_A Myotubularin-related pr 72.5 3.8 0.00013 38.9 4.7 40 108-147 79-120 (657)
3 2yf0_A Myotubularin-related pr 45.0 12 0.00042 34.3 2.8 25 124-148 18-42 (512)
4 2aze_B Transcription factor E2 38.6 12 0.0004 27.6 1.4 15 118-132 85-99 (106)
5 1zyi_A Methylosome subunit pic 35.1 26 0.0009 27.8 3.0 29 120-149 32-60 (171)
6 2kq8_A Cell WALL hydrolase; GF 27.3 8.5 0.00029 25.3 -0.9 22 73-94 13-34 (70)
7 2yrp_A Nuclear factor of activ 24.1 42 0.0015 25.3 2.3 39 121-161 11-53 (114)
8 2kt8_A Probable surface protei 22.8 13 0.00043 25.1 -0.8 26 72-97 13-38 (76)
9 3g1j_A Integron cassette prote 22.7 65 0.0022 23.8 3.0 45 108-158 32-76 (93)
10 2krs_A Probable enterotoxin; a 21.0 15 0.00052 24.3 -0.7 57 73-151 12-68 (74)
11 2hth_B Vacuolar protein sortin 20.8 77 0.0026 23.8 3.2 19 129-147 36-54 (140)
12 1i31_A Clathrin coat assembly 20.6 45 0.0015 27.8 2.0 24 143-166 135-158 (314)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=82.03 E-value=1.4 Score=40.66 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=31.8
Q ss_pred cccCcCceeeccce--eeeecCccceeeEEEEeeceEEEeec
Q 030859 108 FNVAEGERLLKTCQ--CYLSTTAGPIAGLLFISTEKIAFCSE 147 (170)
Q Consensus 108 F~~~~~EkLlKa~~--CYLSTtaGPvaG~LfiSt~kvAFcSd 147 (170)
|...|||.++..-. =|+.--.|++.|+|||++-|+.|.++
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~ 48 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSM 48 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEES
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEcc
Confidence 66789999985521 15555578999999999999999984
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=72.49 E-value=3.8 Score=38.93 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=31.7
Q ss_pred cccCcCceeeccce-e-eeecCccceeeEEEEeeceEEEeec
Q 030859 108 FNVAEGERLLKTCQ-C-YLSTTAGPIAGLLFISTEKIAFCSE 147 (170)
Q Consensus 108 F~~~~~EkLlKa~~-C-YLSTtaGPvaG~LfiSt~kvAFcSd 147 (170)
|...|||.++..-. . |+.--.|++.|+|||++-|+.|.++
T Consensus 79 ~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~ 120 (657)
T 1lw3_A 79 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSM 120 (657)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEES
T ss_pred CccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEec
Confidence 77899999995421 1 4444468999999999999999984
No 3
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=44.97 E-value=12 Score=34.30 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=18.1
Q ss_pred eecCccceeeEEEEeeceEEEeecC
Q 030859 124 LSTTAGPIAGLLFISTEKIAFCSER 148 (170)
Q Consensus 124 LSTtaGPvaG~LfiSt~kvAFcSdr 148 (170)
++.+-+|+.|+|||++-|+.|.+|.
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~ 42 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSH 42 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESS
T ss_pred cCCCCCceeEEEEEECCEEEEeCCC
Confidence 3456799999999999999999965
No 4
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=38.60 E-value=12 Score=27.60 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=13.5
Q ss_pred ccceeeeecCcccee
Q 030859 118 KTCQCYLSTTAGPIA 132 (170)
Q Consensus 118 Ka~~CYLSTtaGPva 132 (170)
+.||+||.++.|||-
T Consensus 85 ~~yqi~LkS~~GPId 99 (106)
T 2aze_B 85 ENFQISLKSKQGPID 99 (106)
T ss_dssp SCEEEEEECSSSCCE
T ss_pred cceEEEEECCCCCEE
Confidence 489999999999984
No 5
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=35.06 E-value=26 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=21.3
Q ss_pred ceeeeecCccceeeEEEEeeceEEEeecCe
Q 030859 120 CQCYLSTTAGPIAGLLFISTEKIAFCSERS 149 (170)
Q Consensus 120 ~~CYLSTtaGPvaG~LfiSt~kvAFcSdrp 149 (170)
-++||-+. ..-.|+|||++.||.+-|+..
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~~ 60 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGSG 60 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETTT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCCC
Confidence 45677553 334599999999999998753
No 6
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=27.31 E-value=8.5 Score=25.26 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.3
Q ss_pred hcccCCChHHHHhhhhccceee
Q 030859 73 HVRLGPKITEIVKGKLSLGARI 94 (170)
Q Consensus 73 hlk~gpsiset~~GkLslGaKi 94 (170)
+||.||+..-.+.|+|..|+++
T Consensus 13 nvRsgP~~~~~ii~~l~~G~~v 34 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGALPQGQKV 34 (70)
T ss_dssp CSSSSSSSCTTSCCCCCSSSSC
T ss_pred EEEcCCCCCCceEEEECCCCEE
Confidence 7999999999999999999975
No 7
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.06 E-value=42 Score=25.27 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=32.4
Q ss_pred eeeeecCccceeeE--EEEeeceEEEeecCeeeee--CCCCCeee
Q 030859 121 QCYLSTTAGPIAGL--LFISTEKIAFCSERSIKIP--SPNGESAR 161 (170)
Q Consensus 121 ~CYLSTtaGPvaG~--LfiSt~kvAFcSdrpl~~~--sp~G~~~~ 161 (170)
.|=+|-++||+.|- |||.-+||. -|--+.|. .++|+.+|
T Consensus 11 I~k~s~~s~~v~GG~Ev~Ll~~k~~--kd~kV~F~E~~~dG~~~W 53 (114)
T 2yrp_A 11 VEAYSPSACSVRGGEELVLTGSNFL--PDSKVVFIERGPDGKLQW 53 (114)
T ss_dssp EEEEESSCEETTCCSEEEEEEESCC--TTCEEEEECBCTTSCBCC
T ss_pred EEEecCcccccCCCCEEEEEecccC--CCCEEEEEEECCCCCcce
Confidence 58889999999995 899999985 68777776 57898887
No 8
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=22.80 E-value=13 Score=25.07 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.2
Q ss_pred hhcccCCChHHHHhhhhccceeeeec
Q 030859 72 EHVRLGPKITEIVKGKLSLGARIIQV 97 (170)
Q Consensus 72 ~hlk~gpsiset~~GkLslGaKil~~ 97 (170)
-+||.||+..-.+.|+|..|+++--.
T Consensus 13 lnvR~~Ps~~~~ii~~l~~G~~v~vl 38 (76)
T 2kt8_A 13 LNVREGASTSSKVIGSLSGNTKVTIV 38 (76)
T ss_dssp EEEESSSSTTSCEEEEECTTCEEEEE
T ss_pred EEEEcCCCCCChhhEEECCCCEEEEE
Confidence 47999999999999999999986543
No 9
>3g1j_A Integron cassette protein; novel, oyster POND, woodshole, USA, structural genomics, unknown function PSI-2, protein structure initiative; 1.70A {Vibrio cholerae}
Probab=22.69 E-value=65 Score=23.84 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=33.3
Q ss_pred cccCcCceeeccceeeeecCccceeeEEEEeeceEEEeecCeeeeeCCCCC
Q 030859 108 FNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGE 158 (170)
Q Consensus 108 F~~~~~EkLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSdrpl~~~sp~G~ 158 (170)
|....||++.=+.+=||---.|=. ||||+.|+ |+-=-|+. .|+.|
T Consensus 32 ft~~~GE~w~fa~~~flpYe~G~t---Lfis~dk~--~~~I~L~~-~~eeq 76 (93)
T 3g1j_A 32 INYERGDVMRFLGSNFVPYESGLS---LFFDKNGS--ERQIMLCV-RPEFQ 76 (93)
T ss_dssp CEECTTCEEEEEEEEEETTTTEEE---EEEEETTE--EEEEEEEC-STTTT
T ss_pred cEeCCCCEEEEeeccCccccCceE---EEEecCCc--EEEEEEec-Ccccc
Confidence 456899999999888998888876 99999998 54433333 34444
No 10
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=20.98 E-value=15 Score=24.34 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=37.6
Q ss_pred hcccCCChHHHHhhhhccceeeeeccCcceeeeeccccCcCceeeccceeeeecCccceeeEEEEeeceEEEeecCeee
Q 030859 73 HVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIK 151 (170)
Q Consensus 73 hlk~gpsiset~~GkLslGaKil~~GG~ekvFkq~F~~~~~EkLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSdrpl~ 151 (170)
+||.||+..-.+.|+|..|+++--.+ + .| -=|.+... | ..=||+..-|....+.||.
T Consensus 12 nvRs~P~~~~~vi~~l~~G~~v~v~~-------~-----~~------~W~kV~~~-g---~~GwV~~~yl~~~~~~~~~ 68 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTLRNNDKVEIIK-------E-----VD------GWYEIRFN-G---KVGYASKSYITIVNEGSLE 68 (74)
T ss_dssp EEESSSSTTTCEEEEEETTCEEEEEE-------E-----ET------TEEEEEET-T---EEEEECSSSEEESSSSCCC
T ss_pred EEEcCCCCCChHHEEECCCCEEEEEE-------E-----eC------CEEEEEEC-C---eEEEEEhHHcCCCCCccch
Confidence 79999999999999999999764332 1 01 14444443 3 1237777777777766664
No 11
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=20.80 E-value=77 Score=23.85 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.3
Q ss_pred cceeeEEEEeeceEEEeec
Q 030859 129 GPIAGLLFISTEKIAFCSE 147 (170)
Q Consensus 129 GPvaG~LfiSt~kvAFcSd 147 (170)
.---|.||++|.||-|-.+
T Consensus 36 ~~k~G~l~LTshRli~~d~ 54 (140)
T 2hth_B 36 KFDAGTLLLSTHRLIWRDQ 54 (140)
T ss_dssp CCCCEEEEEESSEEEEEET
T ss_pred CCcCCEEEEecCEEEEecC
Confidence 4478999999999999754
No 12
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=20.60 E-value=45 Score=27.81 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=18.0
Q ss_pred EEeecCeeeeeCCCCCeeeeEEEE
Q 030859 143 AFCSERSIKIPSPNGESARIHYKV 166 (170)
Q Consensus 143 AFcSdrpl~~~sp~G~~~~~~YKV 166 (170)
.|-+||-|+|..|+|+..=+.|++
T Consensus 135 ~f~~~r~IsFiPPDG~F~Lm~Yr~ 158 (314)
T 1i31_A 135 KFDSERSISFIPPDGEFELMRYRT 158 (314)
T ss_dssp ----CCCEEECCCSEEEEEEEEEE
T ss_pred HcCCcceEEEECCCCCeEEEEEEe
Confidence 477999999999999887788876
Done!