BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030861
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KEV|A Chain A, X-Ray Crystal Structure Of A Dcun1 Domain-Containing
Protein From Galdieria Sulfuraria
Length = 199
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 36 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRG 95
I LF +Y I EG++ L DI+V +DV L+LAWK+KA F+ +E+ G
Sbjct: 9 ILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTXEFSEKEFVEG 68
Query: 96 LKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTGIMRSL 143
L L+ D++ KLK+ L L KE++ P+ F+ FY F F+Y RSL
Sbjct: 69 LANLQVDSLEKLKRKLSSLRKEIEDPSKFRAFYQFVFQYSKEPSQRSL 116
>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GBA|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 221
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%)
Query: 33 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEW 92
++R++ LF Y ++ I EG+E C+D+ V T+ R+L+LAWK +A FT +E+
Sbjct: 5 LQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEF 64
Query: 93 RRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCL 136
G KA+ AD+++ + P L E K+ F+D Y F F++ L
Sbjct: 65 FDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGL 108
>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 200
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 34 ERIDNLFYSYAN-KSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEW 92
++++ L+ Y + + I +GI+ C D+ + + +L++AWK +A Q F+ +E+
Sbjct: 4 KKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEF 63
Query: 93 RRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYC 135
G+ L D++ KLK +P +E+E+K P F+DFY F F +
Sbjct: 64 MDGMTELGCDSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFA 106
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 34 ERIDNLFYSYAN-KSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEW 92
++++ L+ Y + + I +GI+ C D+ + + +L++AWK +A Q F+ +E+
Sbjct: 4 KKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEF 63
Query: 93 RRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYC 135
G+ L D++ KLK LP LE+E+K F+DFY F F +
Sbjct: 64 LDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFA 106
>pdb|3PIK|A Chain A, Outer Membrane Protein Cusc
Length = 446
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 80 KAEKQGYFTLEEWRRGLKALRADTV------NKLKKALPDLEKEVKRPTNFQDFYAFAFR 133
+AE+Q Y EE +R + L V +L A + +E R N+Q YAF +
Sbjct: 128 EAERQNYLATEEAQRAVHILLVSNVAQSYFNQQLAYAQLQIAEETLR--NYQQSYAFVEK 185
Query: 134 YCLTG 138
LTG
Sbjct: 186 QLLTG 190
>pdb|4H1X|A Chain A, Crystal Structure Of A Phosphate Abc Transporter,
Phosphate-Binding Protein (Sp_2084) From Streptococcus
Pneumoniae Tigr4 At 1.77 A Resolution
Length = 265
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 73 LMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNF-------- 124
++ A + A GY +L + +KAL D V + + D E ++RP N
Sbjct: 57 VLSAVQGNANAIGYISLGSLTKSVKALEIDGVKASRDTVLDGEYPLQRPFNIVWSSNLSK 116
Query: 125 --QDFYAF 130
QDF +F
Sbjct: 117 LGQDFISF 124
>pdb|2QTM|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTM|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|3E27|A Chain A, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|B Chain B, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|C Chain C, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|D Chain D, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
Length = 189
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%)
Query: 36 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRG 95
I N Y N P I +++ + R+ ML +AE+ LEE R
Sbjct: 21 IANEVYHALNLEEVWFLPNQIPPHKQGRDITSVESRLQMLELATEAEEHFSICLEELSRK 80
Query: 96 LKALRADTVNKLKKALPDLE 115
+ DT+ +L K PD++
Sbjct: 81 GPSYTYDTMLQLTKKYPDVQ 100
>pdb|1OLT|A Chain A, Coproporphyrinogen Iii Oxidase (Hemn) From Escherichia
Coli Is A Radical Sam Enzyme
Length = 457
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 96 LKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAF 132
L LRA+ N+L + D KEV+R N + F F
Sbjct: 156 LDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIF 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,994,373
Number of Sequences: 62578
Number of extensions: 141858
Number of successful extensions: 269
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 9
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)