Query 030861
Match_columns 170
No_of_seqs 108 out of 326
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077 Uncharacterized conser 100.0 2.4E-44 5.3E-49 302.3 11.7 158 9-169 32-197 (260)
2 PF03556 Cullin_binding: Culli 99.8 3.5E-19 7.6E-24 134.8 4.0 64 104-169 1-65 (117)
3 cd00051 EFh EF-hand, calcium b 95.5 0.082 1.8E-06 32.3 6.3 61 36-96 2-62 (63)
4 cd05031 S-100A10_like S-100A10 95.0 0.11 2.5E-06 36.8 6.6 70 32-101 6-82 (94)
5 PF13833 EF-hand_8: EF-hand do 94.7 0.084 1.8E-06 33.4 4.6 50 49-98 3-53 (54)
6 PTZ00183 centrin; Provisional 94.7 0.71 1.5E-05 34.4 10.5 84 31-114 14-99 (158)
7 cd00052 EH Eps15 homology doma 94.3 0.2 4.4E-06 32.2 6.0 62 37-100 2-63 (67)
8 smart00027 EH Eps15 homology d 94.2 0.21 4.6E-06 35.5 6.3 67 31-99 7-73 (96)
9 PTZ00183 centrin; Provisional 94.2 0.29 6.2E-06 36.6 7.4 68 32-100 51-120 (158)
10 PTZ00184 calmodulin; Provision 94.0 1 2.2E-05 33.0 9.9 68 32-99 9-76 (149)
11 cd05030 calgranulins Calgranul 93.3 0.33 7.1E-06 34.4 5.9 69 32-100 6-81 (88)
12 PF13499 EF-hand_7: EF-hand do 93.1 0.35 7.7E-06 31.4 5.5 62 35-96 1-66 (66)
13 PTZ00184 calmodulin; Provision 92.6 0.63 1.4E-05 34.1 6.9 97 33-129 46-144 (149)
14 cd05029 S-100A6 S-100A6: S-100 92.4 0.83 1.8E-05 32.5 7.0 69 32-100 8-81 (88)
15 cd00213 S-100 S-100: S-100 dom 91.6 1.1 2.3E-05 31.0 6.7 68 32-99 6-80 (88)
16 KOG0027 Calmodulin and related 91.1 2.3 5.1E-05 32.4 8.8 86 32-117 6-97 (151)
17 KOG0036 Predicted mitochondria 90.9 0.95 2.1E-05 41.5 7.2 83 33-118 81-163 (463)
18 cd05026 S-100Z S-100Z: S-100Z 89.1 2.1 4.5E-05 30.5 6.6 69 32-100 8-83 (93)
19 COG5126 FRQ1 Ca2+-binding prot 89.0 1.9 4.1E-05 34.4 6.8 67 32-98 90-156 (160)
20 KOG0030 Myosin essential light 88.6 3.1 6.7E-05 33.0 7.6 90 32-121 9-124 (152)
21 cd05022 S-100A13 S-100A13: S-1 88.4 3.3 7.1E-05 29.6 7.2 68 32-99 6-76 (89)
22 cd05023 S-100A11 S-100A11: S-1 87.2 4.1 8.9E-05 29.0 7.1 69 32-100 7-82 (89)
23 COG5126 FRQ1 Ca2+-binding prot 87.2 5.9 0.00013 31.7 8.6 85 32-117 18-104 (160)
24 KOG0028 Ca2+-binding protein ( 87.0 8.2 0.00018 31.2 9.3 104 32-135 31-136 (172)
25 cd05027 S-100B S-100B: S-100B 87.0 3.3 7.1E-05 29.4 6.5 68 32-99 6-80 (88)
26 cd05025 S-100A1 S-100A1: S-100 86.2 5.5 0.00012 27.9 7.2 68 32-99 7-81 (92)
27 PF09279 EF-hand_like: Phospho 85.1 2.4 5.1E-05 29.1 4.8 63 35-98 1-69 (83)
28 TIGR01446 DnaD_dom DnaD and ph 82.3 2.8 6E-05 28.2 4.1 55 51-108 16-72 (73)
29 cd03567 VHS_GGA VHS domain fam 81.1 18 0.00039 27.9 8.8 94 36-129 2-129 (139)
30 PF13405 EF-hand_6: EF-hand do 79.2 2.6 5.7E-05 23.7 2.7 30 35-64 1-31 (31)
31 KOG0027 Calmodulin and related 78.9 12 0.00025 28.6 7.1 71 31-101 41-116 (151)
32 PF13833 EF-hand_8: EF-hand do 77.8 4.9 0.00011 25.0 3.9 47 84-130 2-50 (54)
33 PF05517 p25-alpha: p25-alpha 77.3 11 0.00024 29.5 6.6 98 36-133 1-123 (154)
34 PF00036 EF-hand_1: EF hand; 76.1 1.9 4.1E-05 24.5 1.5 17 83-99 13-29 (29)
35 PLN02964 phosphatidylserine de 73.7 26 0.00056 33.9 9.2 94 32-129 141-242 (644)
36 PF12763 EF-hand_4: Cytoskelet 73.7 7.9 0.00017 28.5 4.7 67 30-100 6-73 (104)
37 cd00252 SPARC_EC SPARC_EC; ext 73.0 24 0.00051 26.5 7.2 62 31-96 45-106 (116)
38 PF14658 EF-hand_9: EF-hand do 72.3 10 0.00023 26.0 4.7 51 48-98 12-64 (66)
39 PF07531 TAFH: NHR1 homology t 68.1 10 0.00022 27.9 4.1 64 55-124 12-83 (96)
40 PF14555 UBA_4: UBA-like domai 63.4 2.9 6.2E-05 25.7 0.4 18 9-26 24-41 (43)
41 KOG0036 Predicted mitochondria 61.8 49 0.0011 30.6 8.1 100 32-132 12-128 (463)
42 KOG0028 Ca2+-binding protein ( 60.9 45 0.00097 27.0 6.9 64 35-98 107-170 (172)
43 PF12238 MSA-2c: Merozoite sur 57.6 19 0.0004 30.0 4.3 57 17-73 66-124 (205)
44 PF05042 Caleosin: Caleosin re 55.1 48 0.001 27.0 6.2 61 32-92 94-160 (174)
45 cd00052 EH Eps15 homology doma 53.2 37 0.00079 21.3 4.4 30 80-110 9-38 (67)
46 smart00027 EH Eps15 homology d 52.5 40 0.00087 23.6 4.9 87 65-153 4-91 (96)
47 KOG0034 Ca2+/calmodulin-depend 50.2 1.1E+02 0.0024 24.8 7.7 68 33-103 29-100 (187)
48 PF00566 RabGAP-TBC: Rab-GTPas 50.2 1.2E+02 0.0025 23.4 7.8 29 130-159 165-193 (214)
49 KOG1086 Cytosolic sorting prot 49.5 83 0.0018 29.5 7.5 51 34-84 7-59 (594)
50 KOG2643 Ca2+ binding protein, 49.3 33 0.00072 31.9 4.9 93 49-154 301-399 (489)
51 PF01314 AFOR_C: Aldehyde ferr 46.6 12 0.00026 33.4 1.7 35 57-92 117-151 (382)
52 PLN02964 phosphatidylserine de 45.6 69 0.0015 31.0 6.7 64 36-99 181-244 (644)
53 PF13443 HTH_26: Cro/C1-type H 45.3 12 0.00025 24.0 1.1 22 49-70 36-57 (63)
54 PF07848 PaaX: PaaX-like prote 44.9 17 0.00036 25.0 1.8 38 35-72 5-42 (70)
55 PRK10391 oriC-binding nucleoid 44.3 38 0.00083 23.6 3.5 40 88-129 2-41 (71)
56 PF13499 EF-hand_7: EF-hand do 42.2 87 0.0019 19.7 5.8 53 78-130 8-65 (66)
57 PHA01083 hypothetical protein 40.9 37 0.00081 26.9 3.4 46 50-99 43-88 (149)
58 smart00549 TAFH TAF homology. 40.4 47 0.001 24.3 3.7 61 56-121 12-79 (92)
59 KOG0037 Ca2+-binding protein, 40.4 1.9E+02 0.0041 24.4 7.7 69 32-100 55-124 (221)
60 COG0177 Nth Predicted EndoIII- 40.0 26 0.00057 29.2 2.6 37 31-67 46-83 (211)
61 PF07864 DUF1651: Protein of u 38.4 19 0.00042 24.7 1.3 23 140-162 46-68 (75)
62 PF00046 Homeobox: Homeobox do 37.6 49 0.0011 20.6 3.1 37 31-72 10-46 (57)
63 KOG0041 Predicted Ca2+-binding 37.5 1.1E+02 0.0024 25.9 5.9 66 31-96 96-161 (244)
64 COG2922 Smg Uncharacterized pr 37.2 27 0.00059 27.7 2.1 35 36-70 5-40 (157)
65 smart00862 Trans_reg_C Transcr 35.5 91 0.002 20.2 4.3 52 67-119 6-59 (78)
66 COG3132 Uncharacterized protei 35.5 40 0.00087 27.9 2.9 55 57-116 81-140 (215)
67 PF10384 Scm3: Centromere prot 35.4 31 0.00068 23.0 1.9 22 32-53 14-39 (58)
68 PLN02230 phosphoinositide phos 33.7 96 0.0021 29.8 5.6 65 32-97 27-101 (598)
69 smart00054 EFh EF-hand, calciu 33.6 63 0.0014 15.6 2.7 14 84-97 14-27 (29)
70 PF12174 RST: RCD1-SRO-TAF4 (R 33.4 28 0.0006 24.0 1.5 16 84-99 39-54 (70)
71 cd05022 S-100A13 S-100A13: S-1 33.0 1.7E+02 0.0037 20.7 5.6 64 70-137 7-79 (89)
72 PLN02223 phosphoinositide phos 32.8 85 0.0018 29.8 5.0 64 32-96 14-90 (537)
73 PF04337 DUF480: Protein of un 32.6 48 0.001 26.3 2.9 55 58-117 79-134 (148)
74 PF00486 Trans_reg_C: Transcri 32.3 1E+02 0.0022 20.0 4.1 48 71-119 10-58 (77)
75 PRK10945 gene expression modul 32.0 60 0.0013 22.7 3.0 40 87-129 6-45 (72)
76 COG0292 RplT Ribosomal protein 31.4 57 0.0012 24.9 3.0 54 68-128 55-110 (118)
77 cd03568 VHS_STAM VHS domain fa 31.3 2.4E+02 0.0053 21.7 8.4 81 49-129 14-126 (144)
78 PRK10265 chaperone-modulator p 31.0 86 0.0019 22.7 3.9 42 53-118 53-94 (101)
79 KOG2768 Translation initiation 31.0 90 0.0019 26.4 4.4 77 31-107 80-193 (231)
80 KOG0377 Protein serine/threoni 30.4 1.8E+02 0.0038 27.6 6.5 66 33-98 546-615 (631)
81 TIGR01565 homeo_ZF_HD homeobox 30.2 1.4E+02 0.0031 19.7 4.5 39 31-70 11-49 (58)
82 PLN02222 phosphoinositide phos 29.8 1.1E+02 0.0023 29.4 5.2 64 32-98 23-90 (581)
83 cd00086 homeodomain Homeodomai 29.2 1.1E+02 0.0025 18.6 3.8 37 31-72 10-46 (59)
84 COG2147 RPL19A Ribosomal prote 29.1 41 0.00088 26.7 1.9 30 102-131 97-127 (150)
85 PRK05988 formate dehydrogenase 28.3 94 0.002 24.4 3.9 31 49-79 37-67 (156)
86 PF07261 DnaB_2: Replication i 28.1 9.6 0.00021 25.4 -1.6 58 51-111 16-75 (77)
87 cd03022 DsbA_HCCA_Iso DsbA fam 28.0 74 0.0016 24.3 3.3 38 32-69 102-139 (192)
88 COG3710 CadC DNA-binding winge 27.4 93 0.002 24.2 3.7 71 63-135 28-103 (148)
89 PF10036 RLL: Putative carniti 27.0 59 0.0013 27.5 2.7 105 53-160 57-216 (249)
90 cd04766 HTH_HspR Helix-Turn-He 26.9 68 0.0015 22.3 2.7 42 53-118 47-88 (91)
91 PF04361 DUF494: Protein of un 26.5 58 0.0013 25.7 2.4 36 36-71 5-41 (155)
92 PF06420 Mgm101p: Mitochondria 26.5 36 0.00079 27.5 1.3 15 54-68 113-127 (171)
93 PF04957 RMF: Ribosome modulat 26.2 45 0.00097 22.1 1.5 19 80-98 28-46 (55)
94 PLN02228 Phosphoinositide phos 25.9 1.8E+02 0.004 27.8 6.0 65 32-98 22-92 (567)
95 KOG0037 Ca2+-binding protein, 25.8 3.7E+02 0.0081 22.7 7.2 64 36-99 126-189 (221)
96 KOG2351 RNA polymerase II, fou 25.6 45 0.00098 25.9 1.6 47 71-121 72-118 (134)
97 PRK12531 RNA polymerase sigma 25.3 1.2E+02 0.0025 23.7 4.0 34 123-156 36-69 (194)
98 PF13624 SurA_N_3: SurA N-term 25.1 72 0.0016 23.8 2.7 60 51-111 84-144 (154)
99 smart00368 LRR_RI Leucine rich 24.9 73 0.0016 17.5 2.0 17 48-64 11-27 (28)
100 PRK13749 transcriptional regul 24.8 1.2E+02 0.0025 23.0 3.7 60 55-118 51-113 (121)
101 PRK14563 ribosome modulation f 23.9 56 0.0012 21.7 1.6 21 81-101 29-49 (55)
102 PF10036 RLL: Putative carniti 23.8 2.5E+02 0.0055 23.6 6.0 66 53-118 135-231 (249)
103 PF04508 Pox_A_type_inc: Viral 23.7 88 0.0019 17.2 2.1 17 103-119 2-18 (23)
104 COG3093 VapI Plasmid maintenan 23.7 45 0.00098 24.9 1.2 18 139-156 45-62 (104)
105 PF06992 Phage_lambda_P: Repli 23.3 2.2E+02 0.0048 24.2 5.4 31 88-118 66-96 (233)
106 cd04769 HTH_MerR2 Helix-Turn-H 23.2 1.2E+02 0.0025 22.2 3.4 26 55-80 47-72 (116)
107 PRK11239 hypothetical protein; 22.9 87 0.0019 26.3 2.9 55 58-117 84-143 (215)
108 cd03019 DsbA_DsbA DsbA family, 22.9 71 0.0015 24.0 2.3 35 35-69 81-115 (178)
109 PF14788 EF-hand_10: EF hand; 22.9 2.2E+02 0.0047 18.5 4.2 46 53-98 4-49 (51)
110 cd03021 DsbA_GSTK DsbA family, 22.7 1.4E+02 0.003 23.8 4.0 39 35-73 110-152 (209)
111 PHA03080 putative virion core 22.6 85 0.0018 28.3 2.9 47 89-135 49-103 (366)
112 PF11116 DUF2624: Protein of u 22.6 3E+02 0.0065 19.8 6.3 52 49-100 13-64 (85)
113 PF09036 Bcr-Abl_Oligo: Bcr-Ab 22.3 92 0.002 22.0 2.5 32 100-132 24-62 (79)
114 KOG4511 Uncharacterized conser 21.6 52 0.0011 28.9 1.4 37 36-77 50-86 (335)
115 PF01023 S_100: S-100/ICaBP ty 20.8 1.5E+02 0.0033 18.3 3.1 30 32-61 4-35 (44)
116 COG3655 Predicted transcriptio 20.8 40 0.00087 23.6 0.5 27 48-74 40-66 (73)
117 PF06780 Erp_C: Erp protein C- 20.6 1.3E+02 0.0029 23.7 3.4 30 102-131 114-143 (146)
118 PF05503 Pox_G7: Poxvirus G7-l 20.6 98 0.0021 27.9 2.9 47 89-135 48-102 (363)
119 PF13591 MerR_2: MerR HTH fami 20.6 69 0.0015 22.3 1.6 21 52-72 44-64 (84)
120 cd03024 DsbA_FrnE DsbA family, 20.3 1.1E+02 0.0024 23.6 2.9 37 32-68 110-146 (201)
121 PF01323 DSBA: DSBA-like thior 20.3 1.4E+02 0.0031 22.6 3.6 38 34-71 104-141 (193)
122 PRK09239 chorismate mutase; Pr 20.2 1.9E+02 0.004 21.2 4.0 36 120-159 53-88 (104)
123 PRK09849 putative oxidoreducta 20.2 73 0.0016 31.2 2.2 31 57-89 370-400 (702)
124 KOG2223 Uncharacterized conser 20.0 60 0.0013 30.5 1.5 22 141-162 485-506 (586)
No 1
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-44 Score=302.29 Aligned_cols=158 Identities=27% Similarity=0.433 Sum_probs=143.0
Q ss_pred cCCCCcchh-hHHhhcCCCC------CChhhHHHHHHHHHHhCCCCC-CCcChhhHHHHHhhhCCCCCcHHHHHHHHhhC
Q 030861 9 TGQTNSTDA-TDLFRSASSK------ASSKEMERIDNLFYSYANKSS-GMIDPEGIESLCSDIEVSHTDVRILMLAWKMK 80 (170)
Q Consensus 9 ~~~~~~~~A-~~~f~~~~~~------~~~~~~~~L~~lF~~Y~d~~~-d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~ 80 (170)
+..+++..| .+.||.++.. ....+.+.++++|.+|+|+.+ +.|++||+++||+||||+|+|+++|||||+|+
T Consensus 32 ~~dw~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~ 111 (260)
T KOG3077|consen 32 ACDWNLKYAFNDSYYTNPQSLREESVQARVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLG 111 (260)
T ss_pred ccccccchhcccchhcchhHHHHhhhhccccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhc
Confidence 445667778 4555555511 233578899999999999977 69999999999999999999999999999999
Q ss_pred ccccccccHHHHHHhhhhcccCcHHHHHhHHhHHHHHhCCCcchHHHHHHHHhhhccCcCcccccHHHHHHHHHHhhccc
Q 030861 81 AEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTGIMRSLLYGIGIDKLLVFVLLFM 160 (170)
Q Consensus 81 a~~mg~itreeF~~G~~~l~~dSl~~Lk~~l~~L~~~l~d~~~Fk~~Y~ftF~f~~~~~gqK~L~~e~Ai~~W~lll~~~ 160 (170)
|++||+|||++|+.||.+++|||+++||+.|+.++..|+|.+.||+||+|||+|+++ +|||+|++++||+||.|||+.
T Consensus 112 A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l~~l~~~l~d~~~Fk~iY~faf~fa~e-~~qk~Ld~~~ai~~w~ll~~~- 189 (260)
T KOG3077|consen 112 AATMCEFSREEFLKGMTALGCDSIDKLQQRLDFLRSVLKDLEKFKSIYRFAFNFAKE-PGQKSLDLETAISLWKLLFGQ- 189 (260)
T ss_pred cchhhhhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHccHHHhhHHHHhhhhhccC-cCcCcCCHHHHHHHHHHHhCC-
Confidence 999999999999999999999999999999999999999999999999999999997 899999999999999999954
Q ss_pred cccccccCC
Q 030861 161 LIFFFSDIF 169 (170)
Q Consensus 161 ~~f~~ld~W 169 (170)
++++|+.|
T Consensus 190 -~~pll~~w 197 (260)
T KOG3077|consen 190 -TPPLLDQW 197 (260)
T ss_pred -CCchHHHH
Confidence 89999988
No 2
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=99.76 E-value=3.5e-19 Score=134.80 Aligned_cols=64 Identities=27% Similarity=0.411 Sum_probs=58.3
Q ss_pred HHHHHhHHhHHHHHhC-CCcchHHHHHHHHhhhccCcCcccccHHHHHHHHHHhhccccccccccCC
Q 030861 104 VNKLKKALPDLEKEVK-RPTNFQDFYAFAFRYCLTGIMRSLLYGIGIDKLLVFVLLFMLIFFFSDIF 169 (170)
Q Consensus 104 l~~Lk~~l~~L~~~l~-d~~~Fk~~Y~ftF~f~~~~~gqK~L~~e~Ai~~W~lll~~~~~f~~ld~W 169 (170)
|++||++|++|+++|. |+++|++||+|||+|+|+ +|||+|++|+||+||++||+++ .+++++.|
T Consensus 1 I~~lk~~l~~l~~~l~~d~~~F~~~Y~f~F~~~~~-~~qr~l~~e~Ai~~W~llf~~~-~~~~l~~w 65 (117)
T PF03556_consen 1 IDKLKQKLPELRKELRSDPEYFKKFYRFTFDFARE-EGQRSLPLETAIAYWRLLFSGR-FFPLLDSW 65 (117)
T ss_dssp HHHHHHCHHHHHHHCCHSHHHHHHHHHHHHHHHS--TT-SSEEHHHHHHHHHHHTTTT-SSCCHHHH
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhCC-cccCCCCHHHHHHHHHHHcCCC-CcHHHHHH
Confidence 6899999999999995 999999999999999998 8999999999999999999885 58888877
No 3
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.50 E-value=0.082 Score=32.27 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhh
Q 030861 36 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGL 96 (170)
Q Consensus 36 L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~ 96 (170)
+.++|..|....++.|..+-+...+..+|..+.+..+-.+..++....-|.++.++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678998876556899999999999999998887777778888888888999999998654
No 4
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.02 E-value=0.11 Score=36.84 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHhCC-CC-CCCcChhhHHHHHhh-----hCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhccc
Q 030861 32 EMERIDNLFYSYAN-KS-SGMIDPEGIESLCSD-----IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRA 101 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d-~~-~d~I~~dG~~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~~ 101 (170)
....|...|..|-+ .. ++.|..+-+..++.. +|..+..-.+-.+...+....-|.|+-++|+..|..+.+
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 34678889999976 43 589999999999876 677877666666667788888999999999999888665
No 5
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=94.66 E-value=0.084 Score=33.37 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=45.8
Q ss_pred CCcChhhHHHHHhhhCCC-CCcHHHHHHHHhhCccccccccHHHHHHhhhh
Q 030861 49 GMIDPEGIESLCSDIEVS-HTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (170)
Q Consensus 49 d~I~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~ 98 (170)
+.|+.+.+.+.+..+|+. +.+-.+-.|...+-...-|.|+.+||+..|..
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 578999999999889999 98889999999999999999999999998865
No 6
>PTZ00183 centrin; Provisional
Probab=94.66 E-value=0.71 Score=34.43 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhc--ccCcHHHHH
Q 030861 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL--RADTVNKLK 108 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l--~~dSl~~Lk 108 (170)
...+.+.++|..+-...++.|+.+-+..++..+|..+....+-.+--.+....-|.|+.++|+..+... .....+.++
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 355778888977654455789999999999999987776666666666777788999999999987653 223334444
Q ss_pred hHHhHH
Q 030861 109 KALPDL 114 (170)
Q Consensus 109 ~~l~~L 114 (170)
.....+
T Consensus 94 ~~F~~~ 99 (158)
T PTZ00183 94 KAFRLF 99 (158)
T ss_pred HHHHHh
Confidence 444443
No 7
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=94.30 E-value=0.2 Score=32.24 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=46.6
Q ss_pred HHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcc
Q 030861 37 DNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (170)
Q Consensus 37 ~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~ 100 (170)
.++|..+-...++.|+.+.+.+++..+|++.+.+ -.+...+....-|.|+.++|+..|..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~--~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVL--AQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHH--HHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 3578887444458999999999999999844433 3344566777789999999999987654
No 8
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=94.19 E-value=0.21 Score=35.48 Aligned_cols=67 Identities=9% Similarity=0.208 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhc
Q 030861 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l 99 (170)
.....+.+.|..+-...++.|+.+.+.+.+..+|++.+.+.-+. -.+....-|.|+.++|+..|..+
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHHH
Confidence 35677888999886656689999999999999998766555433 34566778999999999988775
No 9
>PTZ00183 centrin; Provisional
Probab=94.18 E-value=0.29 Score=36.59 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhC--CCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcc
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIE--VSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLg--v~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~ 100 (170)
....+.++|..+-...++.|+.+....++...- ..+++. +--+-..+....-|.+++++|...+..++
T Consensus 51 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~-l~~~F~~~D~~~~G~i~~~e~~~~l~~~~ 120 (158)
T PTZ00183 51 KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREE-ILKAFRLFDDDKTGKISLKNLKRVAKELG 120 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHH-HHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 345677777777554456787777776655431 122222 11222344555568888888888887765
No 10
>PTZ00184 calmodulin; Provisional
Probab=93.97 E-value=1 Score=33.01 Aligned_cols=68 Identities=10% Similarity=0.241 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhc
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l 99 (170)
..+.+.+.|..+-...++.|+.+.+..++..+|.++.+..+-.+.-.+....-|.++.++|+..|...
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 45677888877644445899999999999999999887777777778888888999999999988753
No 11
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=93.25 E-value=0.33 Score=34.35 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhCCCC--CCCcChhhHHHHHh-hhCCCCC----cHHHHHHHHhhCccccccccHHHHHHhhhhcc
Q 030861 32 EMERIDNLFYSYANKS--SGMIDPEGIESLCS-DIEVSHT----DVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~--~d~I~~dG~~~~~~-DLgv~~e----d~~~LvLa~~l~a~~mg~itreeF~~G~~~l~ 100 (170)
+...|..+|.+|+... ++.|..+.+..++. .+|-.+. +-.+=-+...+....-|.|+-++|+..+..+.
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4567788999999764 37999999999997 4543332 34444455566777789999999999888763
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.14 E-value=0.35 Score=31.42 Aligned_cols=62 Identities=15% Similarity=0.295 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCc----HHHHHHHHhhCccccccccHHHHHHhh
Q 030861 35 RIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD----VRILMLAWKMKAEKQGYFTLEEWRRGL 96 (170)
Q Consensus 35 ~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed----~~~LvLa~~l~a~~mg~itreeF~~G~ 96 (170)
+|.++|+.|=...++.|+.+-+.+++..++....+ -.+-.+-..+-...-|.|+.+||++-|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47789999876667899999999999999976422 122223445556667999999998753
No 13
>PTZ00184 calmodulin; Provisional
Probab=92.63 E-value=0.63 Score=34.08 Aligned_cols=97 Identities=12% Similarity=0.228 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhHHHHHhhh-CCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcccC-cHHHHHhH
Q 030861 33 MERIDNLFYSYANKSSGMIDPEGIESLCSDI-EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRAD-TVNKLKKA 110 (170)
Q Consensus 33 ~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DL-gv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~~d-Sl~~Lk~~ 110 (170)
...+.++|..+-.+.++.|+.+-..+++... ........+-.+-..+....-|.+++++|..++..++.. +-+.++..
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEM 125 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHH
Confidence 4577888887766555778887776665543 212221222233334444557889999999988887754 33444444
Q ss_pred HhHHHHHhCCCcchHHHHH
Q 030861 111 LPDLEKEVKRPTNFQDFYA 129 (170)
Q Consensus 111 l~~L~~~l~d~~~Fk~~Y~ 129 (170)
+..+...-.+.-.|.+|+.
T Consensus 126 ~~~~d~~~~g~i~~~ef~~ 144 (149)
T PTZ00184 126 IREADVDGDGQINYEEFVK 144 (149)
T ss_pred HHhcCCCCCCcCcHHHHHH
Confidence 4333221122334555544
No 14
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=92.39 E-value=0.83 Score=32.48 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhCC-CC-CCCcChhhHHHHHhh---hCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcc
Q 030861 32 EMERIDNLFYSYAN-KS-SGMIDPEGIESLCSD---IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d-~~-~d~I~~dG~~~~~~D---Lgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~ 100 (170)
....|.++|.+|.. .. .+.|..+.+.+++.. +|..+.+-.+--+-..+....-|.|+-+||+.-+..+-
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 34567889999986 33 479999999999974 68777666666667777888889999999998776653
No 15
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=91.60 E-value=1.1 Score=31.05 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhCC--CCCCCcChhhHHHHHhh-hCCCC----CcHHHHHHHHhhCccccccccHHHHHHhhhhc
Q 030861 32 EMERIDNLFYSYAN--KSSGMIDPEGIESLCSD-IEVSH----TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d--~~~d~I~~dG~~~~~~D-Lgv~~----ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l 99 (170)
..+.+.+.|..|-. ..++.|+.+.+.+++.. +|..+ ....+=.+.-.+....-|.|+-++|+..+..+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 45667888999966 45689999999999976 56433 24444445556677788999999999988765
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=91.12 E-value=2.3 Score=32.45 Aligned_cols=86 Identities=16% Similarity=0.309 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcccC------cHH
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRAD------TVN 105 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~~d------Sl~ 105 (170)
....+.+.|+.+-...++.|..+=+...+..||.+|....+-.+-..+....-|.|+.++|+.-+...... +.+
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 45778889999866666899999999999999999999999999999999999999999999988876542 334
Q ss_pred HHHhHHhHHHHH
Q 030861 106 KLKKALPDLEKE 117 (170)
Q Consensus 106 ~Lk~~l~~L~~~ 117 (170)
.++....-++..
T Consensus 86 el~eaF~~fD~d 97 (151)
T KOG0027|consen 86 ELKEAFRVFDKD 97 (151)
T ss_pred HHHHHHHHHccC
Confidence 566555554444
No 17
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=90.91 E-value=0.95 Score=41.45 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcccCcHHHHHhHHh
Q 030861 33 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALP 112 (170)
Q Consensus 33 ~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~~dSl~~Lk~~l~ 112 (170)
..+|-.+|.+-.-..++.|++..|.++|.|+||+.+|-..--+-.++--..-+.|+.+||.+=+.-.- .+.|..-+.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p---~s~i~di~~ 157 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP---ESDLEDIYD 157 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC---hhHHHHHHH
Confidence 34555666666555568999999999999999999999988888888888889999999998665544 444444444
Q ss_pred HHHHHh
Q 030861 113 DLEKEV 118 (170)
Q Consensus 113 ~L~~~l 118 (170)
.|+..+
T Consensus 158 ~W~h~~ 163 (463)
T KOG0036|consen 158 FWRHVL 163 (463)
T ss_pred hhhhhe
Confidence 444443
No 18
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.12 E-value=2.1 Score=30.50 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhCCCCC-C-CcChhhHHHHHhh-h----CCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcc
Q 030861 32 EMERIDNLFYSYANKSS-G-MIDPEGIESLCSD-I----EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~-d-~I~~dG~~~~~~D-L----gv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~ 100 (170)
....+.++|.+|.+.+. + .|+.+-+..++.. + +-.+.+-.+=-+...+....-|.|+-+||+.-+..+-
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 34556667999997644 4 5999999999976 3 3333444555666777888889999999999887764
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=88.95 E-value=1.9 Score=34.45 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhh
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~ 98 (170)
...+|...|.-|=...++.|...-+.+.++.||-+..+-.+=-|...+.-..-|.|+.++|++++..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 4678888888888777789999999999999999988777777777777777899999999998764
No 20
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=88.63 E-value=3.1 Score=32.96 Aligned_cols=90 Identities=17% Similarity=0.296 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCcccc---------------------ccccHH
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQ---------------------GYFTLE 90 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~m---------------------g~itre 90 (170)
....+.++|+-|-...++.|+...+.--+-.||.+|.+..++-..-...+..| ...|-+
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 44677778877766566899999999999999999998888777666666632 456667
Q ss_pred HHHHhhhhcccC-----cHHHHHhHHhHHHHHhCCC
Q 030861 91 EWRRGLKALRAD-----TVNKLKKALPDLEKEVKRP 121 (170)
Q Consensus 91 eF~~G~~~l~~d-----Sl~~Lk~~l~~L~~~l~d~ 121 (170)
+|++|++...-+ .-..||+.|-+|-..|++.
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~ee 124 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEE 124 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHH
Confidence 777777765322 3477888888887777543
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=88.39 E-value=3.3 Score=29.64 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhCC-CCCCCcChhhHHHHHhh-hCCCCCc-HHHHHHHHhhCccccccccHHHHHHhhhhc
Q 030861 32 EMERIDNLFYSYAN-KSSGMIDPEGIESLCSD-IEVSHTD-VRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d-~~~d~I~~dG~~~~~~D-Lgv~~ed-~~~LvLa~~l~a~~mg~itreeF~~G~~~l 99 (170)
+...|.+.|..|.. ..++.|..+.+..++.. ||-..++ -.+=-+...+....=|.|+-+||+.-+..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45678889999976 55689999999999998 9855554 444455566777788999999999877775
No 22
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=87.23 E-value=4.1 Score=28.97 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhCCCCC--CCcChhhHHHHHhhh-----CCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcc
Q 030861 32 EMERIDNLFYSYANKSS--GMIDPEGIESLCSDI-----EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~--d~I~~dG~~~~~~DL-----gv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~ 100 (170)
....|.++|.+|.+.+. +.|..+.+..+++.- +-..++..+--+.-.+....=|.|+-+||+.-+..+-
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 55778899999987644 389999999999775 2222333444455566777789999999998777664
No 23
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=87.15 E-value=5.9 Score=31.68 Aligned_cols=85 Identities=15% Similarity=0.294 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcc--cCcHHHHHh
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR--ADTVNKLKK 109 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~--~dSl~~Lk~ 109 (170)
...++.+.|..+--..++.|+-+-+..++..||.+|.+..+.-|-.-+.+ .-|.++-.+|+..|...- -++.++|+.
T Consensus 18 qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~ 96 (160)
T COG5126 18 QIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELRE 96 (160)
T ss_pred HHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHH
Confidence 34455555555544455899999999999999999999999999999998 778899999999887743 345666666
Q ss_pred HHhHHHHH
Q 030861 110 ALPDLEKE 117 (170)
Q Consensus 110 ~l~~L~~~ 117 (170)
.+.-.+..
T Consensus 97 aF~~fD~d 104 (160)
T COG5126 97 AFKLFDKD 104 (160)
T ss_pred HHHHhCCC
Confidence 66554433
No 24
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=87.02 E-value=8.2 Score=31.22 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhc--ccCcHHHHHh
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL--RADTVNKLKK 109 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l--~~dSl~~Lk~ 109 (170)
...++...|+-+-....+.|+.+++--=.-.||.+|..-.++-|.--+..+..|.|+=++|+.-|... .-||.+.++.
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~ 110 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKK 110 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHH
Confidence 34566666666654445899999996666779999999999988888888889999999999987652 3469999988
Q ss_pred HHhHHHHHhCCCcchHHHHHHHHhhh
Q 030861 110 ALPDLEKEVKRPTNFQDFYAFAFRYC 135 (170)
Q Consensus 110 ~l~~L~~~l~d~~~Fk~~Y~ftF~f~ 135 (170)
.+...+..=+..-.++.|-+-++.++
T Consensus 111 afrl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 111 AFRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHcccccCCCCcCHHHHHHHHHHhC
Confidence 88755444444445777777777766
No 25
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=87.00 E-value=3.3 Score=29.37 Aligned_cols=68 Identities=10% Similarity=0.206 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhCC-CCCC-CcChhhHHHHHhh-----hCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhc
Q 030861 32 EMERIDNLFYSYAN-KSSG-MIDPEGIESLCSD-----IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d-~~~d-~I~~dG~~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l 99 (170)
+...|.+.|..|.+ ..++ .|+.+.+..++.. +|-.++.-.+=.+-..+....-|.|+-++|+.-+..+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45678899999974 4456 6999999999999 9977654444455556688888999999999866554
No 26
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=86.15 E-value=5.5 Score=27.88 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhC-CCCCC-CcChhhHHHHHhh-hCC----CCCcHHHHHHHHhhCccccccccHHHHHHhhhhc
Q 030861 32 EMERIDNLFYSYA-NKSSG-MIDPEGIESLCSD-IEV----SHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 32 ~~~~L~~lF~~Y~-d~~~d-~I~~dG~~~~~~D-Lgv----~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l 99 (170)
....|.+.|+.|- ...++ .|..+-+.+++.. +|. .|....+=-+...+....-|.|+-++|+.-+..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3467889999996 33456 5999999999975 653 4555555556666788888999999999877765
No 27
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=85.06 E-value=2.4 Score=29.13 Aligned_cols=63 Identities=17% Similarity=0.352 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCCCCcChhhHHHHHhhhCC----CCCcHHHHHHHHhh--CccccccccHHHHHHhhhh
Q 030861 35 RIDNLFYSYANKSSGMIDPEGIESLCSDIEV----SHTDVRILMLAWKM--KAEKQGYFTLEEWRRGLKA 98 (170)
Q Consensus 35 ~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv----~~ed~~~LvLa~~l--~a~~mg~itreeF~~G~~~ 98 (170)
.|..+|.+|.+ +...|+++.+.+|+.+-.= +++.+.-++--+.- .....+.+|.++|+.=+..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 37889999988 5579999999999964433 34444444333221 1224689999999986644
No 28
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=82.34 E-value=2.8 Score=28.17 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=35.9
Q ss_pred cChhhHHHHHhhhCCCCCcHHHHHHHHhh--CccccccccHHHHHHhhhhcccCcHHHHH
Q 030861 51 IDPEGIESLCSDIEVSHTDVRILMLAWKM--KAEKQGYFTLEEWRRGLKALRADTVNKLK 108 (170)
Q Consensus 51 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l--~a~~mg~itreeF~~G~~~l~~dSl~~Lk 108 (170)
...+-+..++++.|.+++ ++..++-+-+ +.+++..+ +..+..|++-|+.|+++.+
T Consensus 16 ~e~~~i~~~~~~~~~~~e-vI~~ai~~a~~~~~~~~~Yi--~~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 16 FEMEDLKYWLDEFGNSPE-LIKEALKEAVSNNKANYKYI--DAILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHH--HHHHHHHHHcCCCCHHHHh
Confidence 446677788888887644 5555544433 34444433 3566679999999999875
No 29
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.11 E-value=18 Score=27.95 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=57.7
Q ss_pred HHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHH--HHHHHHhhCccc----------------------cccccHHH
Q 030861 36 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVR--ILMLAWKMKAEK----------------------QGYFTLEE 91 (170)
Q Consensus 36 L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~--~LvLa~~l~a~~----------------------mg~itree 91 (170)
++++-++--++.....+.++++.+|+-++-+++.+. +-.|..+++.+. .-+|...+
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~ 81 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFR 81 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHH
Confidence 445555555654456778888888888888876533 444555554443 26788999
Q ss_pred HHHhhhhccc------CcHHHHHh----HHhHHHHHhCCCcchHHHHH
Q 030861 92 WRRGLKALRA------DTVNKLKK----ALPDLEKEVKRPTNFQDFYA 129 (170)
Q Consensus 92 F~~G~~~l~~------dSl~~Lk~----~l~~L~~~l~d~~~Fk~~Y~ 129 (170)
|++-+.++-- .+-...|. .|..|...+.+...|++.|+
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~ 129 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYD 129 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 9988877531 23444444 45555556643334666664
No 30
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=79.20 E-value=2.6 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCCCCcChhhHHHHHh-hhC
Q 030861 35 RIDNLFYSYANKSSGMIDPEGIESLCS-DIE 64 (170)
Q Consensus 35 ~L~~lF~~Y~d~~~d~I~~dG~~~~~~-DLg 64 (170)
++.++|+.|=.+.++.|+.+-+...+. .||
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367788888544557788887777777 565
No 31
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=78.86 E-value=12 Score=28.55 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCc----HHHHHHHHh-hCccccccccHHHHHHhhhhccc
Q 030861 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD----VRILMLAWK-MKAEKQGYFTLEEWRRGLKALRA 101 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed----~~~LvLa~~-l~a~~mg~itreeF~~G~~~l~~ 101 (170)
.....+..+++++-...++.|+.+....++...+....+ ...+.=|+. +-....|.||.+|+..-+..+|-
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 467889999999987777899999999999988887654 335555554 44556899999999999999874
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=77.75 E-value=4.9 Score=25.01 Aligned_cols=47 Identities=21% Similarity=0.452 Sum_probs=28.7
Q ss_pred cccccHHHHHHhhhhcccC--cHHHHHhHHhHHHHHhCCCcchHHHHHH
Q 030861 84 QGYFTLEEWRRGLKALRAD--TVNKLKKALPDLEKEVKRPTNFQDFYAF 130 (170)
Q Consensus 84 mg~itreeF~~G~~~l~~d--Sl~~Lk~~l~~L~~~l~d~~~Fk~~Y~f 130 (170)
-|.||+++|...++.+|.. |-+.+...+..++..=...=.|.+|..+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~ 50 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISM 50 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHH
Confidence 4899999999999877766 4444444444433333333345555544
No 33
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=77.30 E-value=11 Score=29.45 Aligned_cols=98 Identities=20% Similarity=0.360 Sum_probs=60.4
Q ss_pred HHHHHHHhCCC---CCCCcChhhHHHHHhhhCCCC---CcHHHHHHHHhhCccccccccHHHHHHhhhhc----ccC--c
Q 030861 36 IDNLFYSYANK---SSGMIDPEGIESLCSDIEVSH---TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL----RAD--T 103 (170)
Q Consensus 36 L~~lF~~Y~d~---~~d~I~~dG~~~~~~DLgv~~---ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l----~~d--S 103 (170)
|+++|..|..- ....|+.....++|.|-||=. ....+=++=.+++++.-..|+-++|++.+..+ +++ +
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~ 80 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSS 80 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccccc
Confidence 67899999532 236899999999999999943 22233334445677776679999999998876 333 6
Q ss_pred HHHHHhHH-----h--------HHHHHhCCCcchHHHHHHHHh
Q 030861 104 VNKLKKAL-----P--------DLEKEVKRPTNFQDFYAFAFR 133 (170)
Q Consensus 104 l~~Lk~~l-----~--------~L~~~l~d~~~Fk~~Y~ftF~ 133 (170)
.+.+...| | ...+.|.|+..|.=+|.--|+
T Consensus 81 ~~~~~~kl~~~~~P~~~g~~~~~~v~rltD~s~YTG~hk~rf~ 123 (154)
T PF05517_consen 81 AEELKEKLTAGGGPSASGATKAGAVDRLTDKSTYTGSHKERFD 123 (154)
T ss_dssp HHHHHHHHHTT--SSSSS-TTS------SSSS-STTS---SS-
T ss_pred HHHHHHHHHccCccccccccccccccccCCCCccchhhhhcCC
Confidence 77777777 2 223345688888888888777
No 34
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=76.07 E-value=1.9 Score=24.54 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=12.2
Q ss_pred ccccccHHHHHHhhhhc
Q 030861 83 KQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 83 ~mg~itreeF~~G~~~l 99 (170)
.-|.|+.+||+.++++|
T Consensus 13 ~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 13 GDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp SSSEEEHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhC
Confidence 34778888888877654
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=73.67 E-value=26 Score=33.88 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhC-CCCCcHH---HHHHHHhhCccccccccHHHHHHhhhhccc-CcHHH
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIE-VSHTDVR---ILMLAWKMKAEKQGYFTLEEWRRGLKALRA-DTVNK 106 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLg-v~~ed~~---~LvLa~~l~a~~mg~itreeF~~G~~~l~~-dSl~~ 106 (170)
....+.+.|+.+-...++.| +...+..|| ++|++-. +-.+...+....-|.|+.+||+..+..++. ++-+.
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 44566667776655444555 677788999 5887665 333344466677899999999999988864 55666
Q ss_pred HHhHHhHHHHHhC---CCcchHHHHH
Q 030861 107 LKKALPDLEKEVK---RPTNFQDFYA 129 (170)
Q Consensus 107 Lk~~l~~L~~~l~---d~~~Fk~~Y~ 129 (170)
++..+..++.+=. +.+.|+++..
T Consensus 217 L~eaFk~fDkDgdG~Is~dEL~~vL~ 242 (644)
T PLN02964 217 KEELFKAADLNGDGVVTIDELAALLA 242 (644)
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 7776665544332 2344444443
No 36
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=73.67 E-value=7.9 Score=28.54 Aligned_cols=67 Identities=16% Similarity=0.405 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhh-CccccccccHHHHHHhhhhcc
Q 030861 30 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKM-KAEKQGYFTLEEWRRGLKALR 100 (170)
Q Consensus 30 ~~~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l-~a~~mg~itreeF~~G~~~l~ 100 (170)
+....+-.++|+... +.++.|+.+....++..=|++.+ +|.=-|-| -...-|.++++||+-+|+=+.
T Consensus 6 ~~e~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~---~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRD---VLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp CCHHHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHH---HHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHH---HHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 346678889999875 55688999999999999898765 33334444 344679999999999998653
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=72.96 E-value=24 Score=26.47 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhh
Q 030861 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGL 96 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~ 96 (170)
....+|.-.|.++=-..++.|+.+-+..++ +.+....+-.+-..+.+..=|.||.+||..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 356778899999944455889999999887 44444445556667778888999999999988
No 38
>PF14658 EF-hand_9: EF-hand domain
Probab=72.34 E-value=10 Score=25.99 Aligned_cols=51 Identities=10% Similarity=0.183 Sum_probs=46.4
Q ss_pred CCCcChhhHHHHHhhhCC-CCCcHHHHHHHHhhCcccc-ccccHHHHHHhhhh
Q 030861 48 SGMIDPEGIESLCSDIEV-SHTDVRILMLAWKMKAEKQ-GYFTLEEWRRGLKA 98 (170)
Q Consensus 48 ~d~I~~dG~~~~~~DLgv-~~ed~~~LvLa~~l~a~~m-g~itreeF~~G~~~ 98 (170)
.+.|.+.-+..|+..+|- +|+|-.+=-|+-.+-...- |.+.++.|+.-|+.
T Consensus 12 tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 12 TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 378999999999999999 9999999999999988887 99999999988764
No 39
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=68.14 E-value=10 Score=27.93 Aligned_cols=64 Identities=31% Similarity=0.358 Sum_probs=43.8
Q ss_pred hHHHHHhhhCCCCC---cHHHHHHHHhhCccccccccHHHHHHhhhhc-cc----CcHHHHHhHHhHHHHHhCCCcch
Q 030861 55 GIESLCSDIEVSHT---DVRILMLAWKMKAEKQGYFTLEEWRRGLKAL-RA----DTVNKLKKALPDLEKEVKRPTNF 124 (170)
Q Consensus 55 G~~~~~~DLgv~~e---d~~~LvLa~~l~a~~mg~itreeF~~G~~~l-~~----dSl~~Lk~~l~~L~~~l~d~~~F 124 (170)
-+++|+.+ .++|| .+..||.+-.- |.|+-|||...++.. +. .=+.=||+.||.|++++.+.+.|
T Consensus 12 tLi~las~-~~spev~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~pqP~lvPFLK~~lp~Lr~~l~~~~~~ 83 (96)
T PF07531_consen 12 TLIQLASD-KQSPEVGENVRELVQNLVD-----GKIEAEEFTSKLQEELNSSPQPYLVPFLKKSLPALRQELPNCARF 83 (96)
T ss_dssp HHHHHHCC-SC-CCHHHHHHHHHHHHHT-----TSS-HHHHHHHHHHHCTSS--TTHHHHHHHHHHHHHHCHCHHHHH
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhcCCCCcchHHHHHHhHHHHHHHHHHHHHH
Confidence 35667777 55553 46666666554 789999999998773 32 23677999999999998766554
No 40
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=63.36 E-value=2.9 Score=25.74 Aligned_cols=18 Identities=6% Similarity=0.077 Sum_probs=13.6
Q ss_pred cCCCCcchhhHHhhcCCC
Q 030861 9 TGQTNSTDATDLFRSASS 26 (170)
Q Consensus 9 ~~~~~~~~A~~~f~~~~~ 26 (170)
...|+++.|++.||+++.
T Consensus 24 ~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 24 ANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HTTT-HHHHHHHHHHSS-
T ss_pred HcCCCHHHHHHHHHhCCC
Confidence 457899999999998753
No 41
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=61.80 E-value=49 Score=30.61 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCC-CCcHHHHHHHHhhCccccccccHHHHHHhhhhc-----------
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVS-HTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL----------- 99 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l----------- 99 (170)
-..++..+|+.+-...++.++.+.+.+-++.|+.. |..-.+=.|...+.+..-|...-+||.+-+..-
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~i 91 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSI 91 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhh
Confidence 45677889999987777899999999999999998 777777888889999999999999999866442
Q ss_pred -----ccCcHHHHHhHHhHHHHHhCCCcchHHHHHHHH
Q 030861 100 -----RADTVNKLKKALPDLEKEVKRPTNFQDFYAFAF 132 (170)
Q Consensus 100 -----~~dSl~~Lk~~l~~L~~~l~d~~~Fk~~Y~ftF 132 (170)
|+-.++.+.++|.++-.+|+|...= +|....|
T Consensus 92 D~~hdG~i~~~Ei~~~l~~~gi~l~de~~~-k~~e~~d 128 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKDLGIQLSDEKAA-KFFEHMD 128 (463)
T ss_pred ccccCCccCHHHHHHHHHHhCCccCHHHHH-HHHHHhc
Confidence 2345788888888887777655332 2444444
No 42
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=60.91 E-value=45 Score=27.04 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhh
Q 030861 35 RIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (170)
Q Consensus 35 ~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~ 98 (170)
.|.+.|.-+.+..++.|.+.-+-+.+..||-+..|-.+--...-..--.-|+++-+||..-|+.
T Consensus 107 Ei~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 107 EIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 3444555555555577888888888888888877777666655555556688888888776654
No 43
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=57.56 E-value=19 Score=30.04 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=40.5
Q ss_pred hhHHhhcCCC-CCChhhHHHHHHHHHHhCCCCCCCc-ChhhHHHHHhhhCCCCCcHHHH
Q 030861 17 ATDLFRSASS-KASSKEMERIDNLFYSYANKSSGMI-DPEGIESLCSDIEVSHTDVRIL 73 (170)
Q Consensus 17 A~~~f~~~~~-~~~~~~~~~L~~lF~~Y~d~~~d~I-~~dG~~~~~~DLgv~~ed~~~L 73 (170)
++|+|.+... .-......++++.|.+-.-.++.++ +.+++++||++-=-+-..+.-|
T Consensus 66 ~~n~fl~~~~~~~~~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~~~s~f~~l 124 (205)
T PF12238_consen 66 HMNAFLNDWPPHMLEEGREKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLDSESPFMKL 124 (205)
T ss_pred HHHHHHccCchhhhhccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhccccHHHHH
Confidence 7888988432 2233567888999988766555667 9999999999985555544444
No 44
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=55.12 E-value=48 Score=26.98 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhh--hCCCC----CcHHHHHHHHhhCccccccccHHHH
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSD--IEVSH----TDVRILMLAWKMKAEKQGYFTLEEW 92 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~D--Lgv~~----ed~~~LvLa~~l~a~~mg~itreeF 92 (170)
.+.+.+++|++|+....|.+...-+.++... .=.|| ....-..++|.|-.+.-|..+||.-
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~i 160 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDI 160 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHH
Confidence 4789999999998766678888888888765 22222 2345566778887778888887764
No 45
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=53.21 E-value=37 Score=21.29 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=21.0
Q ss_pred CccccccccHHHHHHhhhhcccCcHHHHHhH
Q 030861 80 KAEKQGYFTLEEWRRGLKALRADTVNKLKKA 110 (170)
Q Consensus 80 ~a~~mg~itreeF~~G~~~l~~dSl~~Lk~~ 110 (170)
....-|.|+.+|+..-+..+|. +-+.++..
T Consensus 9 D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i 38 (67)
T cd00052 9 DPDGDGLISGDEARPFLGKSGL-PRSVLAQI 38 (67)
T ss_pred CCCCCCcCcHHHHHHHHHHcCC-CHHHHHHH
Confidence 3455699999999999988876 44444333
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=52.46 E-value=40 Score=23.55 Aligned_cols=87 Identities=10% Similarity=-0.041 Sum_probs=46.1
Q ss_pred CCCCcHHHHHHHHhh-CccccccccHHHHHHhhhhcccCcHHHHHhHHhHHHHHhCCCcchHHHHHHHHhhhccCcCccc
Q 030861 65 VSHTDVRILMLAWKM-KAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTGIMRSL 143 (170)
Q Consensus 65 v~~ed~~~LvLa~~l-~a~~mg~itreeF~~G~~~l~~dSl~~Lk~~l~~L~~~l~d~~~Fk~~Y~ftF~f~~~~~gqK~ 143 (170)
++++++..+.-+... -...-|.|+.+++...++.+++. -+.++..+......-.+.=.|.+|+...-.-.+- ..-+-
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~-~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~-~~g~~ 81 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLP-QTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK-LNGYP 81 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH-HcCCC
Confidence 344455555545444 33467999999999999998863 3334433333222222233466666555444443 22344
Q ss_pred ccHHHHHHHH
Q 030861 144 LYGIGIDKLL 153 (170)
Q Consensus 144 L~~e~Ai~~W 153 (170)
|+.++=-.+|
T Consensus 82 ~~~~~~~~~~ 91 (96)
T smart00027 82 IPASLPPSLI 91 (96)
T ss_pred CCccCCHhhc
Confidence 4444433333
No 47
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=50.18 E-value=1.1e+02 Score=24.85 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhC---CC-CCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcccCc
Q 030861 33 MERIDNLFYSYA---NK-SSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADT 103 (170)
Q Consensus 33 ~~~L~~lF~~Y~---d~-~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~~dS 103 (170)
...++.|+.+|+ -+ ..+.|..+-+..+. .+..+|=+..++-+....+.... ++-++|++++....+.+
T Consensus 29 ~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~--v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 29 ANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDP--VDFEEFVRLLSVFSPKA 100 (187)
T ss_pred HHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCc--cCHHHHHHHHhhhcCCc
Confidence 455566555554 33 44778888888887 78888877777777776666655 88888888877765433
No 48
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=50.17 E-value=1.2e+02 Score=23.44 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=22.3
Q ss_pred HHHhhhccCcCcccccHHHHHHHHHHhhcc
Q 030861 130 FAFRYCLTGIMRSLLYGIGIDKLLVFVLLF 159 (170)
Q Consensus 130 ftF~f~~~~~gqK~L~~e~Ai~~W~lll~~ 159 (170)
|++++-.. -=.+.++.+.++.+|+.++.+
T Consensus 165 ~~~~w~~~-lF~~~l~~~~~~~lwD~l~~g 193 (214)
T PF00566_consen 165 YAFPWFLT-LFSRSLPFDDVLRLWDFLLEG 193 (214)
T ss_dssp HHHHHHHT-TTTTTS-HHHHHHHHHHHHHC
T ss_pred hhhhhhHh-hcCCcCCHHHHHHHHHHHHcC
Confidence 77777765 557899999999999977744
No 49
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.53 E-value=83 Score=29.55 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCc--HHHHHHHHhhCcccc
Q 030861 34 ERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD--VRILMLAWKMKAEKQ 84 (170)
Q Consensus 34 ~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed--~~~LvLa~~l~a~~m 84 (170)
..|+.+-++=-|+..++-+...|.-|||.++-+|+. +.+-.||+++++++-
T Consensus 7 ~sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe 59 (594)
T KOG1086|consen 7 ESLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQE 59 (594)
T ss_pred ccHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhH
Confidence 567888888888766788899999999999999987 567789999999973
No 50
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=49.28 E-value=33 Score=31.90 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=67.4
Q ss_pred CCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcccCcHHHHHhHHhHHHHHhCC------Cc
Q 030861 49 GMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKR------PT 122 (170)
Q Consensus 49 d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~~dSl~~Lk~~l~~L~~~l~d------~~ 122 (170)
..+.+|-..+|.++|..+.-.++..-.. ....|.||...|-.-+-.+-.-+.++...++.++.++..+ -+
T Consensus 301 ~kLs~deF~~F~e~Lq~Eil~lEF~~~~----~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~ 376 (489)
T KOG2643|consen 301 GKLSIDEFLKFQENLQEEILELEFERFD----KGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQ 376 (489)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhC----cccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHH
Confidence 5788999999999998754434433322 2233999999999988887766777777788888888843 25
Q ss_pred chHHHHHHHHhhhccCcCcccccHHHHHHHHH
Q 030861 123 NFQDFYAFAFRYCLTGIMRSLLYGIGIDKLLV 154 (170)
Q Consensus 123 ~Fk~~Y~ftF~f~~~~~gqK~L~~e~Ai~~W~ 154 (170)
.|+.|++|..+.+- .++|+.+..
T Consensus 377 Ef~~Ff~Fl~~l~d---------fd~Al~fy~ 399 (489)
T KOG2643|consen 377 EFKAFFRFLNNLND---------FDIALRFYH 399 (489)
T ss_pred HHHHHHHHHhhhhH---------HHHHHHHHH
Confidence 79999888877652 466665544
No 51
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=46.59 E-value=12 Score=33.41 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=28.9
Q ss_pred HHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHH
Q 030861 57 ESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEW 92 (170)
Q Consensus 57 ~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF 92 (170)
..+|.++|+|.-+.-. +|||.+.+-..|.|++++.
T Consensus 117 ~~lcd~~GlDtis~G~-~ia~~me~~e~G~i~~~d~ 151 (382)
T PF01314_consen 117 NDLCDDYGLDTISAGN-TIAWAMELYEKGLITKEDT 151 (382)
T ss_dssp HHHHHHHTB-HHHHHH-HHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHhCCcHHHHHH-HHHHHHHHHHCCCCChhhc
Confidence 4569999999865554 8999999999999999887
No 52
>PLN02964 phosphatidylserine decarboxylase
Probab=45.65 E-value=69 Score=31.03 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=49.4
Q ss_pred HHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhc
Q 030861 36 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 36 L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l 99 (170)
++++|..+-.+.++.|+.+-...++..+|-...+-.+.-+-..+.-..-|.||.+||.+.+...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 7899998854455899999999999999865444445555556666677999999999988873
No 53
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=45.29 E-value=12 Score=24.00 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=14.6
Q ss_pred CCcChhhHHHHHhhhCCCCCcH
Q 030861 49 GMIDPEGIESLCSDIEVSHTDV 70 (170)
Q Consensus 49 d~I~~dG~~~~~~DLgv~~ed~ 70 (170)
..+..+-+.++|+-||++|+++
T Consensus 36 ~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 36 SNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp ----HHHHHHHHHHHT--HHHC
T ss_pred ccccHHHHHHHHHHcCCCHHHH
Confidence 4688999999999999998864
No 54
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=44.93 E-value=17 Score=24.96 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHH
Q 030861 35 RIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRI 72 (170)
Q Consensus 35 ~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~ 72 (170)
=|-.+|-.|--+.++.|...+++++++.+||++..+.+
T Consensus 5 li~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv~e~avR~ 42 (70)
T PF07848_consen 5 LIVTLLGDYLRPRGGWIWVASLIRLLAAFGVSESAVRT 42 (70)
T ss_dssp HHHHHHHHHCCTTTS-EEHHHHHHHHCCTT--HHHHHH
T ss_pred ehHHHHHHHhccCCCceeHHHHHHHHHHcCCChHHHHH
Confidence 45678888888777889999999999999999875443
No 55
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=44.29 E-value=38 Score=23.61 Aligned_cols=40 Identities=13% Similarity=0.353 Sum_probs=30.5
Q ss_pred cHHHHHHhhhhcccCcHHHHHhHHhHHHHHhCCCcchHHHHH
Q 030861 88 TLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYA 129 (170)
Q Consensus 88 treeF~~G~~~l~~dSl~~Lk~~l~~L~~~l~d~~~Fk~~Y~ 129 (170)
|+.+|+--++ +|.|++.|-+.+..+...|+|+..-..||+
T Consensus 2 tk~eyLlkfR--kcss~eTLEkv~e~~~y~L~~~~e~~~f~~ 41 (71)
T PRK10391 2 TVQDYLLKFR--KISSLESLEKLFDHLNYTLTDDQEIINMYR 41 (71)
T ss_pred cHHHHHHHHH--hcCcHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 6677775333 699999999999999999988666555554
No 56
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=42.23 E-value=87 Score=19.73 Aligned_cols=53 Identities=28% Similarity=0.513 Sum_probs=35.1
Q ss_pred hhCccccccccHHHHHHhhhhcccCc-HHHHHhHHhHHHHHh-CC---CcchHHHHHH
Q 030861 78 KMKAEKQGYFTLEEWRRGLKALRADT-VNKLKKALPDLEKEV-KR---PTNFQDFYAF 130 (170)
Q Consensus 78 ~l~a~~mg~itreeF~~G~~~l~~dS-l~~Lk~~l~~L~~~l-~d---~~~Fk~~Y~f 130 (170)
.+-...-|.|+++|+...+..++... -...+..+..+-+.+ .| .=.|.+|.++
T Consensus 8 ~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 8 KFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 34556679999999999999987654 555566666666666 22 2245555543
No 57
>PHA01083 hypothetical protein
Probab=40.86 E-value=37 Score=26.93 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=38.2
Q ss_pred CcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhc
Q 030861 50 MIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 50 ~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l 99 (170)
.|+-+-+.++++-+|+||+.+...+.+.+-+-|.. |.-|.+=++++
T Consensus 43 ~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~----kalWesIaKKl 88 (149)
T PHA01083 43 YISDEEAIFLAESAGIDPEIALLGCHADRNENPRA----KAIWESIAKKQ 88 (149)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHH
Confidence 57888999999999999999999999999888875 66676655553
No 58
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=40.43 E-value=47 Score=24.31 Aligned_cols=61 Identities=30% Similarity=0.355 Sum_probs=39.0
Q ss_pred HHHHHhhhC-CCC-CcHHHHHHHHhhCccccccccHHHHHHhhhhc-cc----CcHHHHHhHHhHHHHHhCCC
Q 030861 56 IESLCSDIE-VSH-TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL-RA----DTVNKLKKALPDLEKEVKRP 121 (170)
Q Consensus 56 ~~~~~~DLg-v~~-ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l-~~----dSl~~Lk~~l~~L~~~l~d~ 121 (170)
+++|..+.+ .+. +.|..||+.-.- |.++-|||..-+++. +- .=+.=||+.||-|++++.+.
T Consensus 12 Li~ls~~~~qpe~~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~~qP~lvPFLK~slp~Lr~~l~~~ 79 (92)
T smart00549 12 LIQLSNDISQPEVAERVRTLVLGLVN-----GTITAEEFTSRLQEALNSPLQPYLIPFLKNSLPLLRRELLHC 79 (92)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHcCCCCchhHHHHHHhhHHHHHHHHHH
Confidence 445555555 332 457777776554 789999999988773 22 22555777777777777443
No 59
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=40.41 E-value=1.9e+02 Score=24.42 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCC-CcHHHHHHHHhhCccccccccHHHHHHhhhhcc
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSH-TDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~-ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~ 100 (170)
..+.+..+|..=--+....|..+-+++-+.-.+-++ ....+..+...+..+..|.|.-+||..-|+.++
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~ 124 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN 124 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Confidence 345777777764333348899999999988888887 555677888999999999999999999887764
No 60
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=40.00 E-value=26 Score=29.18 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhCCCCC-CCcChhhHHHHHhhhCCCC
Q 030861 31 KEMERIDNLFYSYANKSS-GMIDPEGIESLCSDIEVSH 67 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~-d~I~~dG~~~~~~DLgv~~ 67 (170)
...+...+||.+|.++++ -.++.+++..++...|+--
T Consensus 46 ~vn~at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGlyr 83 (211)
T COG0177 46 VVNKATPALFKRYPTPEDLLNADEEELEELIKSIGLYR 83 (211)
T ss_pred HHHHHHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCcH
Confidence 345677899999999876 6789999999999988854
No 61
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=38.35 E-value=19 Score=24.68 Aligned_cols=23 Identities=13% Similarity=-0.194 Sum_probs=19.9
Q ss_pred CcccccHHHHHHHHHHhhccccc
Q 030861 140 MRSLLYGIGIDKLLVFVLLFMLI 162 (170)
Q Consensus 140 gqK~L~~e~Ai~~W~lll~~~~~ 162 (170)
+.|-|.++.|++.|+-|+...|+
T Consensus 46 ~rr~l~~~~A~e~W~~L~~~GW~ 68 (75)
T PF07864_consen 46 TRRRLTREEARELWKELQKTGWR 68 (75)
T ss_pred EEEEEEHHHHHHHHHHHHHcCCE
Confidence 35889999999999999988764
No 62
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=37.60 E-value=49 Score=20.60 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHH
Q 030861 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRI 72 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~ 72 (170)
.....|++.|+. + ..++.+-+..++..||+++..|..
T Consensus 10 ~q~~~L~~~f~~--~---~~p~~~~~~~la~~l~l~~~~V~~ 46 (57)
T PF00046_consen 10 EQLKVLEEYFQE--N---PYPSKEEREELAKELGLTERQVKN 46 (57)
T ss_dssp HHHHHHHHHHHH--S---SSCHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHH--h---cccccccccccccccccccccccc
Confidence 355677788875 2 356678899999999999876654
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=37.51 E-value=1.1e+02 Score=25.86 Aligned_cols=66 Identities=14% Similarity=0.330 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhh
Q 030861 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGL 96 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~ 96 (170)
+..+....+|.+|-.+.++.|+..-+-+++|.||-.-.++.+=-+.-.+--..-|.+|--||+--.
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 345667789999988777899999999999999988776666555566666666888888887543
No 64
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.19 E-value=27 Score=27.73 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCC-CCcChhhHHHHHhhhCCCCCcH
Q 030861 36 IDNLFYSYANKSS-GMIDPEGIESLCSDIEVSHTDV 70 (170)
Q Consensus 36 L~~lF~~Y~d~~~-d~I~~dG~~~~~~DLgv~~ed~ 70 (170)
|-=+|+.|.+.+. -.++.|.+..-++|.|.+++|+
T Consensus 5 l~YLfE~y~h~ea~l~vd~d~L~~~L~~aGF~~~dI 40 (157)
T COG2922 5 LMYLFETYIHNEAELPVDQDSLENDLEDAGFDREDI 40 (157)
T ss_pred HHHHHHHHhccCCCCCcCHHHHHhHHHHcCCCHHHH
Confidence 4568999998655 4688999999999999999885
No 65
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=35.49 E-value=91 Score=20.16 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHhhCccccccccHHHHHHh-hhhcc-cCcHHHHHhHHhHHHHHhC
Q 030861 67 HTDVRILMLAWKMKAEKQGYFTLEEWRRG-LKALR-ADTVNKLKKALPDLEKEVK 119 (170)
Q Consensus 67 ~ed~~~LvLa~~l~a~~mg~itreeF~~G-~~~l~-~dSl~~Lk~~l~~L~~~l~ 119 (170)
....+.-+|+.++..+.. .+|+++..+- |..-. ..+...++.++..|++.|.
T Consensus 6 Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~ 59 (78)
T smart00862 6 LTPKEFRLLELLLRNPGR-VVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLE 59 (78)
T ss_pred cCHHHHHHHHHHHhCCCC-ccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHh
Confidence 344455677778877654 7999999986 54322 3466789999999999994
No 66
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.47 E-value=40 Score=27.86 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=42.8
Q ss_pred HHHHh----hhCCCCCcHHHHHHHHhhCccccccc-cHHHHHHhhhhcccCcHHHHHhHHhHHHH
Q 030861 57 ESLCS----DIEVSHTDVRILMLAWKMKAEKQGYF-TLEEWRRGLKALRADTVNKLKKALPDLEK 116 (170)
Q Consensus 57 ~~~~~----DLgv~~ed~~~LvLa~~l~a~~mg~i-treeF~~G~~~l~~dSl~~Lk~~l~~L~~ 116 (170)
.+||. ||.+++..+.++++.-.=||.+.|+. ||..= -...++++..+..|..|-.
T Consensus 81 hrfcnsefgdlkl~~~evali~lLlLRGaQTpgELrtRanR-----m~~Fsdv~e~e~~Le~La~ 140 (215)
T COG3132 81 HRFCNSEFGDLKLSAAEVALITLLLLRGAQTPGELRTRANR-----MYEFSDVAEVEHTLERLAN 140 (215)
T ss_pred HHHhhccccceeechHHHHHHHHHHHcCCCChhHHHHHHHh-----hhccchHHHHHHHHHHHhc
Confidence 46788 99999999999999999999999875 33321 2356888888888877643
No 67
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=35.43 E-value=31 Score=23.00 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhCCC--CC--CCcCh
Q 030861 32 EMERIDNLFYSYANK--SS--GMIDP 53 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~--~~--d~I~~ 53 (170)
-.+.++.||+||..+ ++ |+|+.
T Consensus 14 ~k~~~e~I~~KY~~~d~~~~~DeIDL 39 (58)
T PF10384_consen 14 FKSRWESIIEKYGQPDFEDQGDEIDL 39 (58)
T ss_dssp HHHHHHHHHHHHCSG-TCCSSEBCTT
T ss_pred HHHHHHHHHHHhcCcccCCccceeec
Confidence 457789999999874 22 66765
No 68
>PLN02230 phosphoinositide phospholipase C 4
Probab=33.73 E-value=96 Score=29.83 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCC-----CCcHHHHHHHHhh-----CccccccccHHHHHHhhh
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVS-----HTDVRILMLAWKM-----KAEKQGYFTLEEWRRGLK 97 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~-----~ed~~~LvLa~~l-----~a~~mg~itreeF~~G~~ 97 (170)
.+..+..+|.+|.+.. +.++.+++.+|+.+-+=. +++..-++....- .....+.++.++|..=+.
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 4578999999998654 699999999999887733 2333333322110 111235588899887553
No 69
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=33.60 E-value=63 Score=15.60 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=7.1
Q ss_pred cccccHHHHHHhhh
Q 030861 84 QGYFTLEEWRRGLK 97 (170)
Q Consensus 84 mg~itreeF~~G~~ 97 (170)
-|.++.++|...++
T Consensus 14 ~g~i~~~e~~~~~~ 27 (29)
T smart00054 14 DGKIDFEEFKDLLK 27 (29)
T ss_pred CCcEeHHHHHHHHH
Confidence 34555555555444
No 70
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=33.40 E-value=28 Score=24.00 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.0
Q ss_pred cccccHHHHHHhhhhc
Q 030861 84 QGYFTLEEWRRGLKAL 99 (170)
Q Consensus 84 mg~itreeF~~G~~~l 99 (170)
-++|||++|++-++.+
T Consensus 39 ~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 39 KKKISREEFVRKLRQI 54 (70)
T ss_pred HCCCCHHHHHHHHHHH
Confidence 4789999999999885
No 71
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=33.00 E-value=1.7e+02 Score=20.67 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=42.6
Q ss_pred HHHHHHHHhhCcc--ccccccHHHHHHhhhh-cc--cCcHHHHHhHHhHHHHHh----CCCcchHHHHHHHHhhhcc
Q 030861 70 VRILMLAWKMKAE--KQGYFTLEEWRRGLKA-LR--ADTVNKLKKALPDLEKEV----KRPTNFQDFYAFAFRYCLT 137 (170)
Q Consensus 70 ~~~LvLa~~l~a~--~mg~itreeF~~G~~~-l~--~dSl~~Lk~~l~~L~~~l----~d~~~Fk~~Y~ftF~f~~~ 137 (170)
+..|+-+...=+. .-|.|+++|+..-+++ ++ +... ..+..+-+.+ ...=.|.+|-......+..
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~----~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDV----EGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCH----HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 4556666666665 6799999999999988 76 2221 3455555555 2344788887777766653
No 72
>PLN02223 phosphoinositide phospholipase C
Probab=32.80 E-value=85 Score=29.82 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhh-------CCCCCcHHHHHHHHhh------CccccccccHHHHHHhh
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDI-------EVSHTDVRILMLAWKM------KAEKQGYFTLEEWRRGL 96 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DL-------gv~~ed~~~LvLa~~l------~a~~mg~itreeF~~G~ 96 (170)
.+..+.++|++|.+. .+.++.+++.+|+.=| +...++...++-.-.- +....+.++.++|..=+
T Consensus 14 ~p~~v~~~f~~~~~~-~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 14 QPDLILNFFGNEFHG-YDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CcHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 457789999999753 3689999999999333 4445555444433111 11112446666666544
No 73
>PF04337 DUF480: Protein of unknown function, DUF480; InterPro: IPR007432 This family consists of several proteins of uncharacterised function.; PDB: 3BZ6_A.
Probab=32.61 E-value=48 Score=26.27 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=38.2
Q ss_pred HHHhhhCCCCCcHHHHHHHHhhCcccccccc-HHHHHHhhhhcccCcHHHHHhHHhHHHHH
Q 030861 58 SLCSDIEVSHTDVRILMLAWKMKAEKQGYFT-LEEWRRGLKALRADTVNKLKKALPDLEKE 117 (170)
Q Consensus 58 ~~~~DLgv~~ed~~~LvLa~~l~a~~mg~it-reeF~~G~~~l~~dSl~~Lk~~l~~L~~~ 117 (170)
+||+-|++++....+|++...=|..+.|++- |.+ +-...++++.....|..|...
T Consensus 79 r~~~~l~l~~~e~All~~LlLRGpQT~GELR~Rs~-----Rl~~F~d~~~Ve~~L~~L~~r 134 (148)
T PF04337_consen 79 RFCNTLQLSPQELALLCLLLLRGPQTPGELRTRSE-----RLHEFADVAEVEAVLERLAER 134 (148)
T ss_dssp -HHHHHT--HHHHHHHHHHHHH-SB-HHHHHHHHT-----TTS--SSHHHHHHHHHHHHHT
T ss_pred hhhhhcCCCHHHHHHHHHHHHcCCCchhHHHhhhc-----cccCCCCHHHHHHHHHHHHhc
Confidence 5789999999999999999999999998873 221 123578899998888887654
No 74
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=32.29 E-value=1e+02 Score=20.00 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=34.3
Q ss_pred HHHHHHHhhCccccccccHHHHHHhhhhcc-cCcHHHHHhHHhHHHHHhC
Q 030861 71 RILMLAWKMKAEKQGYFTLEEWRRGLKALR-ADTVNKLKKALPDLEKEVK 119 (170)
Q Consensus 71 ~~LvLa~~l~a~~mg~itreeF~~G~~~l~-~dSl~~Lk~~l~~L~~~l~ 119 (170)
+.-+|+.++..+. -.+||++..+.+-.-. -.+-..+..+|..|++.|.
T Consensus 10 e~~lL~~L~~~~~-~~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~ 58 (77)
T PF00486_consen 10 EFRLLELLLRNPG-RVVSREELIEALWGDEEDVSDNSLDVHISRLRKKLE 58 (77)
T ss_dssp HHHHHHHHHHTTT-SEEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCCCHHHhCChhhhcccccchhhHHHHHHHHHHHHh
Confidence 4445555555543 3689999998644433 3778899999999999993
No 75
>PRK10945 gene expression modulator; Provisional
Probab=32.00 E-value=60 Score=22.72 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=29.9
Q ss_pred ccHHHHHHhhhhcccCcHHHHHhHHhHHHHHhCCCcchHHHHH
Q 030861 87 FTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYA 129 (170)
Q Consensus 87 itreeF~~G~~~l~~dSl~~Lk~~l~~L~~~l~d~~~Fk~~Y~ 129 (170)
.|+.+|+--++ .|.|++.|-+.+..++..|++. .+..||.
T Consensus 6 Mtk~dyL~~fR--rcss~eTLEkvie~~~~~L~~~-E~~~f~~ 45 (72)
T PRK10945 6 LTKTDYLMRLR--RCQTIDTLERVIEKNKYELSDD-ELAVFYS 45 (72)
T ss_pred ccHHHHHHHHH--hcCcHHHHHHHHHHhhccCCHH-HHHHHHH
Confidence 38888886443 5999999999999999999773 4544543
No 76
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=31.41 E-value=57 Score=24.88 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=42.0
Q ss_pred CcHHHHHHHHhhCccccccccHHHHHHhhhhcccCcHHHHHhHHhHHHHHh--CCCcchHHHH
Q 030861 68 TDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEV--KRPTNFQDFY 128 (170)
Q Consensus 68 ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~~dSl~~Lk~~l~~L~~~l--~d~~~Fk~~Y 128 (170)
-|+.-|.++-+--|..+-.+|=+.|++|++.-|++=-- .+..+| .||+.|..+-
T Consensus 55 RdFR~LWI~RINAA~R~~GlsYS~fi~gLkkA~I~inR-------KvLadlAi~d~~aF~~lv 110 (118)
T COG0292 55 RDFRKLWIARINAAARENGLSYSRFINGLKKAGIEIDR-------KVLADLAINDPAAFAALV 110 (118)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHcCchhhH-------HHHHHHHhcCHHHHHHHH
Confidence 46888999988888889999999999999998876222 223344 7999998774
No 77
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=31.34 E-value=2.4e+02 Score=21.66 Aligned_cols=81 Identities=15% Similarity=0.266 Sum_probs=44.6
Q ss_pred CCcChhhHHHHHhhhCCCCCcHH--HHHHHHhhCcc----------------------ccccccHHHHHHhhhhcccC-c
Q 030861 49 GMIDPEGIESLCSDIEVSHTDVR--ILMLAWKMKAE----------------------KQGYFTLEEWRRGLKALRAD-T 103 (170)
Q Consensus 49 d~I~~dG~~~~~~DLgv~~ed~~--~LvLa~~l~a~----------------------~mg~itreeF~~G~~~l~~d-S 103 (170)
...+-++++.+|+-++-++..+. +-.|--+++.+ =.-+|...+|++-+.++--+ +
T Consensus 14 ~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~ 93 (144)
T cd03568 14 TSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRV 93 (144)
T ss_pred CCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccC
Confidence 34566777777777776654322 22222333322 22578889999998776433 3
Q ss_pred HHH----HHhHHhHHHHHhC-CCc--chHHHHH
Q 030861 104 VNK----LKKALPDLEKEVK-RPT--NFQDFYA 129 (170)
Q Consensus 104 l~~----Lk~~l~~L~~~l~-d~~--~Fk~~Y~ 129 (170)
-.. +...|.+|...+. +|+ ++..+|+
T Consensus 94 ~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~ 126 (144)
T cd03568 94 HPTVKEKLREVVKQWADEFKNDPSLSLMSDLYK 126 (144)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 334 4445555555553 443 3555554
No 78
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=31.03 E-value=86 Score=22.68 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=28.0
Q ss_pred hhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcccCcHHHHHhHHhHHHHHh
Q 030861 53 PEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEV 118 (170)
Q Consensus 53 ~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~~dSl~~Lk~~l~~L~~~l 118 (170)
+.-+.++..||||+++.+.+. ... +|-+++|++.+..|++.|
T Consensus 53 ~~~a~rL~~dl~in~~gialv--l~L----------------------Ld~i~~Lr~el~~L~~~l 94 (101)
T PRK10265 53 VQRAVRLRHELALDWPGIAVA--LTL----------------------LDEIAHLKQENRLLRQRL 94 (101)
T ss_pred HHHHHHHHHHcCCCHHHHHHH--HHH----------------------HHHHHHHHHHHHHHHHHH
Confidence 455778888999998854432 111 256777777777777765
No 79
>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis]
Probab=30.99 E-value=90 Score=26.41 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHhCCCCCC--------CcC-----hhh-------HHHHHhhhCCCCCcHHHHHHHHhhCcccc------
Q 030861 31 KEMERIDNLFYSYANKSSG--------MID-----PEG-------IESLCSDIEVSHTDVRILMLAWKMKAEKQ------ 84 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~d--------~I~-----~dG-------~~~~~~DLgv~~ed~~~LvLa~~l~a~~m------ 84 (170)
.+..-|...|+-.++.+.+ .|- -+| ++-+|.-|.-+|+++.-+.||.+.-..++
T Consensus 80 ~Y~ElL~rvf~ilreknpe~aGe~~k~v~~PPqvlRegkkT~f~Nf~Dick~mhR~pdHv~~FLlAELgTsGSidg~~rL 159 (231)
T KOG2768|consen 80 TYYELLSRVFNILREKNPELAGEKRKFVMKPPQVLREGKKTVFVNFADICKTMHRSPDHVMQFLLAELGTSGSIDGQQRL 159 (231)
T ss_pred cHHHHHHHHHHHHHhcCchhcccccceeeCCHHHHhhccceeeeeHHHHHHHhccChHHHHHHHHHHhccccccCCCceE
Confidence 3456788899998764432 122 234 67899999999999999999999877776
Q ss_pred ---ccccHHHHHHhhhhc--------ccCcHHHH
Q 030861 85 ---GYFTLEEWRRGLKAL--------RADTVNKL 107 (170)
Q Consensus 85 ---g~itreeF~~G~~~l--------~~dSl~~L 107 (170)
|.|++.+|-+-++++ .|.|.+..
T Consensus 160 viKGrfq~kq~e~VLRrYI~eyV~C~~CkSpdt~ 193 (231)
T KOG2768|consen 160 VIKGRFQQKQFENVLRRYIKEYVTCKTCKSPDTI 193 (231)
T ss_pred EEeccccHHHHHHHHHHHHHHheEeeecCChhHH
Confidence 999999999988875 47776653
No 80
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=30.38 E-value=1.8e+02 Score=27.60 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhHHHHHh----hhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhh
Q 030861 33 MERIDNLFYSYANKSSGMIDPEGIESLCS----DIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (170)
Q Consensus 33 ~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~----DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~ 98 (170)
++.|+.+|+---.+.++.|..+-...-|+ ...+..+|-.++-+|..+.-..=|.|--+||++..+-
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 45677777655444457888887776665 4456778888888888888888888888888887653
No 81
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=30.19 E-value=1.4e+02 Score=19.74 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcH
Q 030861 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDV 70 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~ 70 (170)
.....|++.|++-.=-- ..++.+-...||.+||++..-+
T Consensus 11 ~Q~~~Le~~fe~~~y~~-~~~~~~~r~~la~~lgl~~~vv 49 (58)
T TIGR01565 11 EQKEKMRDFAEKLGWKL-KDKRREEVREFCEEIGVTRKVF 49 (58)
T ss_pred HHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHhCCCHHHe
Confidence 45567777777643210 1255678999999999986543
No 82
>PLN02222 phosphoinositide phospholipase C 2
Probab=29.76 E-value=1.1e+02 Score=29.43 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCC----CcHHHHHHHHhhCccccccccHHHHHHhhhh
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSH----TDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~----ed~~~LvLa~~l~a~~mg~itreeF~~G~~~ 98 (170)
-+..|..+|.+|.+ .+.|+.+++.+|+.+-.-++ ++..-++=.+ -....-+.++.++|..=+..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-SSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhhhhccCcCHHHHHHHhcC
Confidence 34689999999986 36899999999998866543 2333222211 11223466889998886644
No 83
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=29.17 E-value=1.1e+02 Score=18.63 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHH
Q 030861 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRI 72 (170)
Q Consensus 31 ~~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~ 72 (170)
.....|+++|.. + ...+.+-+..+++.+|++...|..
T Consensus 10 ~~~~~Le~~f~~--~---~~P~~~~~~~la~~~~l~~~qV~~ 46 (59)
T cd00086 10 EQLEELEKEFEK--N---PYPSREEREELAKELGLTERQVKI 46 (59)
T ss_pred HHHHHHHHHHHh--C---CCCCHHHHHHHHHHHCcCHHHHHH
Confidence 355678888888 2 245678889999999998776654
No 84
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=29.08 E-value=41 Score=26.71 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=24.3
Q ss_pred CcHHHHHhHHhHHHHHh-CCCcchHHHHHHH
Q 030861 102 DTVNKLKKALPDLEKEV-KRPTNFQDFYAFA 131 (170)
Q Consensus 102 dSl~~Lk~~l~~L~~~l-~d~~~Fk~~Y~ft 131 (170)
..|-.|+..|.+|+++= -|+..|+.+|+.+
T Consensus 97 ~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~a 127 (150)
T COG2147 97 KRIRALRRELRKLRDDGKIDKHTYRKLYRMA 127 (150)
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 56777899999998887 4888888888765
No 85
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=28.29 E-value=94 Score=24.40 Aligned_cols=31 Identities=10% Similarity=0.322 Sum_probs=24.5
Q ss_pred CCcChhhHHHHHhhhCCCCCcHHHHHHHHhh
Q 030861 49 GMIDPEGIESLCSDIEVSHTDVRILMLAWKM 79 (170)
Q Consensus 49 d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l 79 (170)
+.|..+.+...++.||+.+.++.-++=-|-+
T Consensus 37 G~Ip~e~~~~iA~~l~v~~~~V~~vatFY~~ 67 (156)
T PRK05988 37 GYVPEDAVPVIAEALNLSRAEVHGVITFYHD 67 (156)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 5799999999999999998877666555544
No 86
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=28.09 E-value=9.6 Score=25.40 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=25.8
Q ss_pred cChhhHHHHHhhhCCCCCcHHHHHHHHhh--CccccccccHHHHHHhhhhcccCcHHHHHhHH
Q 030861 51 IDPEGIESLCSDIEVSHTDVRILMLAWKM--KAEKQGYFTLEEWRRGLKALRADTVNKLKKAL 111 (170)
Q Consensus 51 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l--~a~~mg~itreeF~~G~~~l~~dSl~~Lk~~l 111 (170)
...+-+..++++.|.+++ ++..++-+-+ +..+... -+.-++.|.+-|+.|+++..++.
T Consensus 16 ~e~~~l~~~~~~~~~~~~-~v~~ai~~~~~~~~~~~~Y--i~~Il~~W~~~gi~t~e~~~~~~ 75 (77)
T PF07261_consen 16 SEIEKLEKWIDDYGFSPE-VVNEAIEYALENNKRSFNY--IEKILNNWKQKGIKTVEDAEEYE 75 (77)
T ss_dssp HHHHHHHHHHCCCHHHHH-HHHHHHHHHHHCT--SHHH--HHHHHHHHHHCT--SCCCCT---
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCHHH--HHHHHHHHHHcCCCCHHHHHHHh
Confidence 334455555555555444 3333333333 2222222 23566678888888877655443
No 87
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=27.95 E-value=74 Score=24.30 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCc
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD 69 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed 69 (170)
..+-++++|..|-....+.-+.+-+.+.++++|++++.
T Consensus 102 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~ 139 (192)
T cd03022 102 AEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADE 139 (192)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 44556788888765443444567788899999998753
No 88
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=27.39 E-value=93 Score=24.18 Aligned_cols=71 Identities=8% Similarity=0.080 Sum_probs=48.6
Q ss_pred hCCCCCcHHHHHHHHhhCccccccccHHHHHH-hhhhcccCcHHHHHhHHhHHHHHhCC----CcchHHHHHHHHhhh
Q 030861 63 IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRR-GLKALRADTVNKLKKALPDLEKEVKR----PTNFQDFYAFAFRYC 135 (170)
Q Consensus 63 Lgv~~ed~~~LvLa~~l~a~~mg~itreeF~~-G~~~l~~dSl~~Lk~~l~~L~~~l~d----~~~Fk~~Y~ftF~f~ 135 (170)
--|..+-...-||..+++++ -..++|+++++ -|..-.+..- .|-+.|..||+.|.| ..++.-|++==|.|.
T Consensus 28 ~~v~l~~~~~~lL~~L~e~~-geVvsk~eL~~~VW~~~~v~~~-~Ltq~I~~LRr~L~d~~~~~~~I~TvPrrGyk~~ 103 (148)
T COG3710 28 EVVKLGPRELKLLSLLLERA-GEVVSKDELLDAVWPGRIVTVN-TLTQAISALRRALRDIGDGHRLIATVPRRGYKFT 103 (148)
T ss_pred eEEEecHHHHHHHHHHHhcc-CceecHHHHHHHhCCCceEccC-hHHHHHHHHHHHHhccCCcceEEEEeCCcceEEe
Confidence 34455566777888888844 37799999999 6877544332 299999999999953 344666655444443
No 89
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=26.97 E-value=59 Score=27.49 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=60.6
Q ss_pred hhhHHHHHhhhCCC-CCcHHHHHHHHhhCcccc-------------------------------------ccccHHHHHH
Q 030861 53 PEGIESLCSDIEVS-HTDVRILMLAWKMKAEKQ-------------------------------------GYFTLEEWRR 94 (170)
Q Consensus 53 ~dG~~~~~~DLgv~-~ed~~~LvLa~~l~a~~m-------------------------------------g~itreeF~~ 94 (170)
++++.+||.|||.. ...-..-+|-|+++-.-. --|+=.+|..
T Consensus 57 ~~~~~kYl~dl~cP~~~~~~~~~ldWLL~~AV~leY~Dn~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ld~~s~~f~~ 136 (249)
T PF10036_consen 57 PKAFEKYLKDLGCPFSSESRQEQLDWLLGLAVRLEYKDNAYDDDSSYKSAKEEQNKETSPQCKSTNPLDNLDFNSPEFKA 136 (249)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhccccccccccccchhhhcccccccccccCcccccCCCCHHHHH
Confidence 67999999999999 466777788888763210 1244568888
Q ss_pred hhhhc----cc----CcHHHHHhHHhHHHHHhCC-----Ccch-H---HHHHHHHhhhccCcCcccccHHHHHHHHHHhh
Q 030861 95 GLKAL----RA----DTVNKLKKALPDLEKEVKR-----PTNF-Q---DFYAFAFRYCLTGIMRSLLYGIGIDKLLVFVL 157 (170)
Q Consensus 95 G~~~l----~~----dSl~~Lk~~l~~L~~~l~d-----~~~F-k---~~Y~ftF~f~~~~~gqK~L~~e~Ai~~W~lll 157 (170)
|...| ++ |-+-.|++...-+...|+. +..= + ..-.-.|+++-+ - +.=.++.|+...++|.
T Consensus 137 gv~~La~lL~i~~h~d~~v~l~a~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~lG~~-~--~d~~~~~aa~iLRlL~ 213 (249)
T PF10036_consen 137 GVRALASLLQIPRHPDHLVTLKAACKLIKEKLSPEAISEANIEQSGKPFLDDKLFPLGFD-V--KDPALNEAARILRLLH 213 (249)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHhchhhhccccccccCCcccccccCCCCCC-C--CcHHHHHHHHHHHHHH
Confidence 87664 44 3355666655555555521 1000 0 001122333332 1 2223788888888887
Q ss_pred ccc
Q 030861 158 LFM 160 (170)
Q Consensus 158 ~~~ 160 (170)
-..
T Consensus 214 i~~ 216 (249)
T PF10036_consen 214 IED 216 (249)
T ss_pred HHH
Confidence 543
No 90
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.93 E-value=68 Score=22.34 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=27.3
Q ss_pred hhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcccCcHHHHHhHHhHHHHHh
Q 030861 53 PEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEV 118 (170)
Q Consensus 53 ~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~~dSl~~Lk~~l~~L~~~l 118 (170)
+.-+..+..|+|++++++..+.- =.+.++.|++.|..|++.+
T Consensus 47 l~~i~~L~~d~g~~l~~i~~~l~------------------------l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 47 LRRIQRLTQELGVNLAGVKRILE------------------------LEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHh
Confidence 34445556678888877665542 2256777777777777766
No 91
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=26.55 E-value=58 Score=25.68 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCCC-CCcChhhHHHHHhhhCCCCCcHH
Q 030861 36 IDNLFYSYANKSS-GMIDPEGIESLCSDIEVSHTDVR 71 (170)
Q Consensus 36 L~~lF~~Y~d~~~-d~I~~dG~~~~~~DLgv~~ed~~ 71 (170)
|-=+|++|.+.++ ...+.+-+.+.+.+.|.+.+++.
T Consensus 5 L~yLfE~y~~~~~~~~~d~~~L~~~L~~aGF~~~eI~ 41 (155)
T PF04361_consen 5 LMYLFENYIDFESDACPDQDDLTRELSAAGFEDEEIN 41 (155)
T ss_pred HHHHHHHHcCCccccCCCHHHHHHHHHHcCCCHHHHH
Confidence 4458999999844 56889999999999999998765
No 92
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=26.51 E-value=36 Score=27.52 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=13.0
Q ss_pred hhHHHHHhhhCCCCC
Q 030861 54 EGIESLCSDIEVSHT 68 (170)
Q Consensus 54 dG~~~~~~DLgv~~e 68 (170)
..+||-|+||||..|
T Consensus 113 NALmRCCKDLGIaSE 127 (171)
T PF06420_consen 113 NALMRCCKDLGIASE 127 (171)
T ss_pred HHHHHHHHHcCcchh
Confidence 568999999999865
No 93
>PF04957 RMF: Ribosome modulation factor; InterPro: IPR007040 This entry contains ribosome modulation factors (RMF). They associate with 70s ribosomes and converts them to a dimeric form (100S ribosomes) which appear during the transition from the exponential growth phase to the stationary phase of Escherichia colicells [, ]. It has been proposed that RMF mediates the formation of a 'storage ribosome', the 100S particle, in stationary phase by inactivating excess ribosomes to protect them from degradation and to maintain the required balance between the concentrations of ribosomes and protein synthesis factors in order to maintain translational elongation efficiency [, ]. ; PDB: 2JRM_A 3V24_V 3V22_V.
Probab=26.25 E-value=45 Score=22.12 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=14.2
Q ss_pred CccccccccHHHHHHhhhh
Q 030861 80 KAEKQGYFTLEEWRRGLKA 98 (170)
Q Consensus 80 ~a~~mg~itreeF~~G~~~ 98 (170)
-||-...-.|+.|+.||++
T Consensus 28 ~CPy~~~~~r~~Wl~GWre 46 (55)
T PF04957_consen 28 LCPYQDGDARSQWLGGWRE 46 (55)
T ss_dssp C--SSSCHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHH
Confidence 3666677789999999987
No 94
>PLN02228 Phosphoinositide phospholipase C
Probab=25.95 E-value=1.8e+02 Score=27.76 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCC-CcH-HHHHHHHhhCcc----ccccccHHHHHHhhhh
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSH-TDV-RILMLAWKMKAE----KQGYFTLEEWRRGLKA 98 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~-ed~-~~LvLa~~l~a~----~mg~itreeF~~G~~~ 98 (170)
.++.|..+|.+|.+. +.|+.+++.+|+.+..=+. .+. .+.-|-.++... .-|.++.++|..=+..
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 568899999999864 5799999999998875432 111 233333444322 2367999999876643
No 95
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=25.77 E-value=3.7e+02 Score=22.67 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhc
Q 030861 36 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (170)
Q Consensus 36 L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l 99 (170)
=.++|.+|--+.+..|+..-+.+=+..||..+..-..=.|..+.--..-|.+.-.+|++.+-.|
T Consensus 126 Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 126 WRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 3456666655556899999999999999999887666667777655558999999999876654
No 96
>KOG2351 consensus RNA polymerase II, fourth largest subunit [Transcription]
Probab=25.64 E-value=45 Score=25.88 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=33.5
Q ss_pred HHHHHHHhhCccccccccHHHHHHhhhhcccCcHHHHHhHHhHHHHHhCCC
Q 030861 71 RILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRP 121 (170)
Q Consensus 71 ~~LvLa~~l~a~~mg~itreeF~~G~~~l~~dSl~~Lk~~l~~L~~~l~d~ 121 (170)
.+-.+-..|+....++|.+..+- .|.|+|.+.=|..+|+|...+.|.
T Consensus 72 tv~avr~iLs~~~lhkFE~A~lg----nLcpetaEEAkaLvPSL~nkidD~ 118 (134)
T KOG2351|consen 72 TVRAVRTILSGKGLHKFEVAQLG----NLCPETAEEAKALVPSLENKIDDD 118 (134)
T ss_pred HHHHHHHHHhhCCcchhhHHHHh----ccCcccHHHHHHhccccccccCHH
Confidence 44445555666666777765554 589999999999999987776543
No 97
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=25.25 E-value=1.2e+02 Score=23.71 Aligned_cols=34 Identities=6% Similarity=-0.052 Sum_probs=21.2
Q ss_pred chHHHHHHHHhhhccCcCcccccHHHHHHHHHHh
Q 030861 123 NFQDFYAFAFRYCLTGIMRSLLYGIGIDKLLVFV 156 (170)
Q Consensus 123 ~Fk~~Y~ftF~f~~~~~gqK~L~~e~Ai~~W~ll 156 (170)
+...+|+|++.+..+.....-+--|+-+.+|+-.
T Consensus 36 y~~~l~~~~~~~~~~~~~AeDlvQev~l~l~~~~ 69 (194)
T PRK12531 36 YAPKLKQFAMKHVGNEQVAMEMVQETMSTVWQKA 69 (194)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhH
Confidence 6667888888887652223444456666777643
No 98
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=25.06 E-value=72 Score=23.81 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=24.7
Q ss_pred cChhhHHHHHhhhCCCCCcHHHHHHHHhhCc-cccccccHHHHHHhhhhcccCcHHHHHhHH
Q 030861 51 IDPEGIESLCSDIEVSHTDVRILMLAWKMKA-EKQGYFTLEEWRRGLKALRADTVNKLKKAL 111 (170)
Q Consensus 51 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a-~~mg~itreeF~~G~~~l~~dSl~~Lk~~l 111 (170)
|.-.=+.+..+++||.++|-.+--.-....+ ..-|.++++.|.+-++..|.+ .+.+++.|
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~g~t-~~~~~~~l 144 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQGMT-EEEFKEEL 144 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcc-ccccchhh
Confidence 4555566778999999877665544444221 113889999999999888764 45555554
No 99
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=24.94 E-value=73 Score=17.50 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.1
Q ss_pred CCCcChhhHHHHHhhhC
Q 030861 48 SGMIDPEGIESLCSDIE 64 (170)
Q Consensus 48 ~d~I~~dG~~~~~~DLg 64 (170)
++.|+.+|+..+|+-|.
T Consensus 11 ~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 11 NNKLGDEGARALAEALK 27 (28)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 36899999999998763
No 100
>PRK13749 transcriptional regulator MerD; Provisional
Probab=24.82 E-value=1.2e+02 Score=22.99 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=35.0
Q ss_pred hHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhh---cccCcHHHHHhHHhHHHHHh
Q 030861 55 GIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA---LRADTVNKLKKALPDLEKEV 118 (170)
Q Consensus 55 G~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~---l~~dSl~~Lk~~l~~L~~~l 118 (170)
..++.|.++|++++++.-|.-++-- +...+ ...-...+.. -.+..+..|+..|..|.++-
T Consensus 51 ~~I~~~r~~G~sL~eI~~ll~l~~~--~~~~~--~~~~~~~~~~~v~~~i~~L~~l~~~L~~l~~~~ 113 (121)
T PRK13749 51 CFVRAAFEAGIGLDALARLCRALDA--ADGDE--AAAQLAVLRQLVERRREALADLEVQLATMPTEP 113 (121)
T ss_pred HHHHHHHHcCCCHHHHHHHHhhhcC--CCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788999999999888777643 22222 1222333333 13445666666666665554
No 101
>PRK14563 ribosome modulation factor; Provisional
Probab=23.87 E-value=56 Score=21.73 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=15.8
Q ss_pred ccccccccHHHHHHhhhhccc
Q 030861 81 AEKQGYFTLEEWRRGLKALRA 101 (170)
Q Consensus 81 a~~mg~itreeF~~G~~~l~~ 101 (170)
||-...-.|+.|+.||++-..
T Consensus 29 CPy~~~~~r~~Wl~GWReg~~ 49 (55)
T PRK14563 29 CPYQTLDARSQWLGGWREAME 49 (55)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 565566679999999987433
No 102
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=23.81 E-value=2.5e+02 Score=23.65 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=43.4
Q ss_pred hhhHHHHHhhhCCCCC-cHH-H-----HHHHHhhCcccc--------------------c----cccHHHHHHhhhhccc
Q 030861 53 PEGIESLCSDIEVSHT-DVR-I-----LMLAWKMKAEKQ--------------------G----YFTLEEWRRGLKALRA 101 (170)
Q Consensus 53 ~dG~~~~~~DLgv~~e-d~~-~-----LvLa~~l~a~~m--------------------g----~itreeF~~G~~~l~~ 101 (170)
.+|+..+|.-|||.+. |.. + .++..+++++.. | -=.-++++..++-|.+
T Consensus 135 ~~gv~~La~lL~i~~h~d~~v~l~a~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~d~~~~~aa~iLRlL~i 214 (249)
T PF10036_consen 135 KAGVRALASLLQIPRHPDHLVTLKAACKLIKEKLSPEAISEANIEQSGKPFLDDKLFPLGFDVKDPALNEAARILRLLHI 214 (249)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHhchhhhccccccccCCcccccccCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4799999999999963 332 2 234444444322 2 1223566677777788
Q ss_pred CcHHHHHhHHhHHHHHh
Q 030861 102 DTVNKLKKALPDLEKEV 118 (170)
Q Consensus 102 dSl~~Lk~~l~~L~~~l 118 (170)
..+..|+.+|.+....+
T Consensus 215 ~~LR~lQt~Ine~iv~v 231 (249)
T PF10036_consen 215 EDLRELQTKINETIVAV 231 (249)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999998875544
No 103
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.74 E-value=88 Score=17.18 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=14.0
Q ss_pred cHHHHHhHHhHHHHHhC
Q 030861 103 TVNKLKKALPDLEKEVK 119 (170)
Q Consensus 103 Sl~~Lk~~l~~L~~~l~ 119 (170)
.++.+|+.|..|+.+|.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36788999999999884
No 104
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=23.66 E-value=45 Score=24.90 Aligned_cols=18 Identities=11% Similarity=-0.177 Sum_probs=12.9
Q ss_pred cCcccccHHHHHHHHHHh
Q 030861 139 IMRSLLYGIGIDKLLVFV 156 (170)
Q Consensus 139 ~gqK~L~~e~Ai~~W~ll 156 (170)
.|+++|..|||+.+=+.|
T Consensus 45 ng~~~iT~dmAlrL~k~f 62 (104)
T COG3093 45 NGRRAITADMALRLAKVF 62 (104)
T ss_pred cCCcCCCHHHHHHHHHHh
Confidence 468888888888764443
No 105
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=23.32 E-value=2.2e+02 Score=24.18 Aligned_cols=31 Identities=6% Similarity=0.240 Sum_probs=28.3
Q ss_pred cHHHHHHhhhhcccCcHHHHHhHHhHHHHHh
Q 030861 88 TLEEWRRGLKALRADTVNKLKKALPDLEKEV 118 (170)
Q Consensus 88 treeF~~G~~~l~~dSl~~Lk~~l~~L~~~l 118 (170)
.|.+|+.++.+.|+.|+++++.-|...+..-
T Consensus 66 aKr~Wi~~f~engI~t~eQv~~Gm~~aR~~~ 96 (233)
T PF06992_consen 66 AKRQWIKAFAENGITTMEQVRAGMRRARASE 96 (233)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Confidence 4999999999999999999999999888775
No 106
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.23 E-value=1.2e+02 Score=22.22 Aligned_cols=26 Identities=0% Similarity=0.102 Sum_probs=18.6
Q ss_pred hHHHHHhhhCCCCCcHHHHHHHHhhC
Q 030861 55 GIESLCSDIEVSHTDVRILMLAWKMK 80 (170)
Q Consensus 55 G~~~~~~DLgv~~ed~~~LvLa~~l~ 80 (170)
-+++.+.++|++++++.-+.-..-.+
T Consensus 47 ~~I~~lr~~G~sl~eI~~~l~~~~~~ 72 (116)
T cd04769 47 RFIKEARQLGFTLAELKAIFAGHEGR 72 (116)
T ss_pred HHHHHHHHcCCCHHHHHHHHhccccC
Confidence 34566799999999998765444443
No 107
>PRK11239 hypothetical protein; Provisional
Probab=22.89 E-value=87 Score=26.32 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=43.2
Q ss_pred HHHh----hhCCCCCcHHHHHHHHhhCcccccccc-HHHHHHhhhhcccCcHHHHHhHHhHHHHH
Q 030861 58 SLCS----DIEVSHTDVRILMLAWKMKAEKQGYFT-LEEWRRGLKALRADTVNKLKKALPDLEKE 117 (170)
Q Consensus 58 ~~~~----DLgv~~ed~~~LvLa~~l~a~~mg~it-reeF~~G~~~l~~dSl~~Lk~~l~~L~~~ 117 (170)
+||. +|++++..+.++++..+=|..+.|++- |.+ +-...++++.....|.+|...
T Consensus 84 r~~~~ef~~l~l~~~~~All~~LlLRGPQT~gELRtRs~-----Rl~~F~dv~~Ve~~L~~L~~r 143 (215)
T PRK11239 84 RFCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSRAA-----RMYEFSDMAEVESTLEQLANR 143 (215)
T ss_pred hcccccccccCCCHHHHHHHHHHHhcCCCChHHHHHhHh-----cCCcCCCHHHHHHHHHHHHhc
Confidence 4665 799999999999999999999999873 332 113578888888888887654
No 108
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=22.88 E-value=71 Score=24.00 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCc
Q 030861 35 RIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD 69 (170)
Q Consensus 35 ~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed 69 (170)
-...+|..+.....+..+.+.+.++++++|++.+.
T Consensus 81 ~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~ 115 (178)
T cd03019 81 LHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKK 115 (178)
T ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHH
Confidence 34568888776544555688899999999997653
No 109
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=22.86 E-value=2.2e+02 Score=18.53 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=31.7
Q ss_pred hhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhh
Q 030861 53 PEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (170)
Q Consensus 53 ~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~ 98 (170)
-.-+.+++..++|+.++--...|-..+.-..-|....+||+.=.+.
T Consensus 4 f~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 4 FKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4557788888999998888888888887777888988888864443
No 110
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=22.72 E-value=1.4e+02 Score=23.78 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=25.0
Q ss_pred HHHHHHHHh----CCCCCCCcChhhHHHHHhhhCCCCCcHHHH
Q 030861 35 RIDNLFYSY----ANKSSGMIDPEGIESLCSDIEVSHTDVRIL 73 (170)
Q Consensus 35 ~L~~lF~~Y----~d~~~d~I~~dG~~~~~~DLgv~~ed~~~L 73 (170)
-++.+|..| .+-.++....+-+.+.++++|++++++..+
T Consensus 110 ~~~~l~~a~f~~g~~i~~~~~l~~vL~~~a~~~Gld~~~~~~~ 152 (209)
T cd03021 110 ALEALFREFWVRPWSLTEPITESQSISVAADKLGGSAEQAEKL 152 (209)
T ss_pred HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHcCCCcccHHHH
Confidence 344454444 444434555566789999999998876543
No 111
>PHA03080 putative virion core protein; Provisional
Probab=22.64 E-value=85 Score=28.29 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=37.9
Q ss_pred HHHHHHhhhh-----cccCcHHHHHhHHhHHHHHh---CCCcchHHHHHHHHhhh
Q 030861 89 LEEWRRGLKA-----LRADTVNKLKKALPDLEKEV---KRPTNFQDFYAFAFRYC 135 (170)
Q Consensus 89 reeF~~G~~~-----l~~dSl~~Lk~~l~~L~~~l---~d~~~Fk~~Y~ftF~f~ 135 (170)
|+.-+++.+. +.+.|+++|++.|..|+..- .|...|-++|+-.+.|-
T Consensus 49 resiiNsIy~~ces~i~v~~~~~l~~iL~~Lr~~~~yV~n~~EF~rLynsL~RfT 103 (366)
T PHA03080 49 KESIINSIYNCCESNIRITDIEHLKKILDNLRRHSVYVCNSTEFWRLYNSLYRFT 103 (366)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccceeecChHHHHHHHHHHHHHh
Confidence 7788887765 45788999999999998886 68899998887666553
No 112
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=22.63 E-value=3e+02 Score=19.78 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=45.5
Q ss_pred CCcChhhHHHHHhhhCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhhcc
Q 030861 49 GMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (170)
Q Consensus 49 d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itreeF~~G~~~l~ 100 (170)
..|..+-+.+||..-||+.+....-.++..|+....-.|..++=..-++++.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999998888887776666653
No 113
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=22.28 E-value=92 Score=22.05 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=18.3
Q ss_pred ccCcHHHHHhHHhH-------HHHHhCCCcchHHHHHHHH
Q 030861 100 RADTVNKLKKALPD-------LEKEVKRPTNFQDFYAFAF 132 (170)
Q Consensus 100 ~~dSl~~Lk~~l~~-------L~~~l~d~~~Fk~~Y~ftF 132 (170)
.|.|+-+|-..|.. |++++ |.+.||-||-=|-
T Consensus 24 ~l~svgd~e~eLerCK~sirrLeqev-nkERFrmiYLQTl 62 (79)
T PF09036_consen 24 ELRSVGDIEQELERCKASIRRLEQEV-NKERFRMIYLQTL 62 (79)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 45666555554444 44444 4568999997663
No 114
>KOG4511 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.64 E-value=52 Score=28.92 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHHHHHHHH
Q 030861 36 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAW 77 (170)
Q Consensus 36 L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~ 77 (170)
...+...|+.--+ .=+..||+++||+|+.+++-|...
T Consensus 50 y~~IH~EYk~LVd-----~lle~f~eevgi~p~qf~~Ac~~~ 86 (335)
T KOG4511|consen 50 YIMIHKEYKQLVD-----TLLECFCEEVGITPTQFVAACQLF 86 (335)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHhCCCHHHHHHHHhcc
Confidence 4455555554211 246789999999999887777665
No 115
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=20.82 E-value=1.5e+02 Score=18.27 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhCCCC--CCCcChhhHHHHHh
Q 030861 32 EMERIDNLFYSYANKS--SGMIDPEGIESLCS 61 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~--~d~I~~dG~~~~~~ 61 (170)
+...|..+|.+|+..+ .+.+.-+.+-++++
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 4566889999998543 36777777766654
No 116
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=20.82 E-value=40 Score=23.60 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCCcChhhHHHHHhhhCCCCCcHHHHH
Q 030861 48 SGMIDPEGIESLCSDIEVSHTDVRILM 74 (170)
Q Consensus 48 ~d~I~~dG~~~~~~DLgv~~ed~~~Lv 74 (170)
...|..+-+.++|..|+..|.|+..++
T Consensus 40 ~k~I~~~tL~~iC~~LeCqpgDiley~ 66 (73)
T COG3655 40 VKAIRLSTLEKICKALECQPGDILEYV 66 (73)
T ss_pred cceeeHHHHHHHHHHcCCChhheeEEe
Confidence 367999999999999999999976543
No 117
>PF06780 Erp_C: Erp protein C-terminus; InterPro: IPR009618 This entry represents the C terminus of bacterial Erp proteins that seem to be specific to Borrelia burgdorferi (a causative agent of Lyme disease). Borrelia Erp proteins are particularly heterogeneous, which might enable them to interact with a wide variety of host components [].
Probab=20.64 E-value=1.3e+02 Score=23.71 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=25.8
Q ss_pred CcHHHHHhHHhHHHHHhCCCcchHHHHHHH
Q 030861 102 DTVNKLKKALPDLEKEVKRPTNFQDFYAFA 131 (170)
Q Consensus 102 dSl~~Lk~~l~~L~~~l~d~~~Fk~~Y~ft 131 (170)
..+++||..|..+..-|.|...|..|=.|.
T Consensus 114 ~DLekLKs~LekvK~YL~d~~nfEeIk~yI 143 (146)
T PF06780_consen 114 EDLEKLKSKLEKVKEYLKDSSNFEEIKEYI 143 (146)
T ss_pred hHHHHHHHHHHHHHHHHhccccHHHHHHHh
Confidence 358999999999999999999999886653
No 118
>PF05503 Pox_G7: Poxvirus G7-like ; InterPro: IPR008787 This family of proteins which include vaccinia virus G7L and fowlpox virus FPV120 are associated with the intracellualar mature virus particle. The function of this family of proteins is not known.
Probab=20.64 E-value=98 Score=27.87 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=37.1
Q ss_pred HHHHHHhhhh-----cccCcHHHHHhHHhHHHHHh---CCCcchHHHHHHHHhhh
Q 030861 89 LEEWRRGLKA-----LRADTVNKLKKALPDLEKEV---KRPTNFQDFYAFAFRYC 135 (170)
Q Consensus 89 reeF~~G~~~-----l~~dSl~~Lk~~l~~L~~~l---~d~~~Fk~~Y~ftF~f~ 135 (170)
|+.-+++... +.+.++++|++.|..|+..- .|...|-++|+-.+.|-
T Consensus 48 kesiiNsIy~~cE~~i~i~~~~~L~~iL~~Lr~~s~yV~n~~EF~rLynsL~RfT 102 (363)
T PF05503_consen 48 KESIINSIYDKCESEIRITDIEHLKSILDNLRRYSVYVCNSSEFWRLYNSLYRFT 102 (363)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhcccceeecChHHHHHHHHHHHHHh
Confidence 7777776654 45788999999999998886 68889988887666653
No 119
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=20.61 E-value=69 Score=22.32 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=15.6
Q ss_pred ChhhHHHHHhhhCCCCCcHHH
Q 030861 52 DPEGIESLCSDIEVSHTDVRI 72 (170)
Q Consensus 52 ~~dG~~~~~~DLgv~~ed~~~ 72 (170)
-+.=+.++..||||+++.+.+
T Consensus 44 rl~~~~rL~~Dl~in~~gi~l 64 (84)
T PF13591_consen 44 RLRRIRRLHRDLGINLEGIAL 64 (84)
T ss_pred HHHHHHHHHHHcCCCHHHHHH
Confidence 345577888999999986543
No 120
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.32 E-value=1.1e+02 Score=23.63 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCC
Q 030861 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHT 68 (170)
Q Consensus 32 ~~~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~e 68 (170)
...-++.+|..|-....+.-+.+.+..+++.+|++++
T Consensus 110 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~ 146 (201)
T cd03024 110 QDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAA 146 (201)
T ss_pred HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHH
Confidence 3455677888765443344456788899999999875
No 121
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=20.27 E-value=1.4e+02 Score=22.60 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCCCcChhhHHHHHhhhCCCCCcHH
Q 030861 34 ERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVR 71 (170)
Q Consensus 34 ~~L~~lF~~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~ 71 (170)
.-..++|..|-....+.-+.+-+...++++|++++.+.
T Consensus 104 ~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~ 141 (193)
T PF01323_consen 104 AFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFD 141 (193)
T ss_dssp HHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHH
Confidence 44667888887665566667789999999999887543
No 122
>PRK09239 chorismate mutase; Provisional
Probab=20.24 E-value=1.9e+02 Score=21.20 Aligned_cols=36 Identities=14% Similarity=-0.048 Sum_probs=25.8
Q ss_pred CCcchHHHHHHHHhhhccCcCcccccHHHHHHHHHHhhcc
Q 030861 120 RPTNFQDFYAFAFRYCLTGIMRSLLYGIGIDKLLVFVLLF 159 (170)
Q Consensus 120 d~~~Fk~~Y~ftF~f~~~~~gqK~L~~e~Ai~~W~lll~~ 159 (170)
||..-++++.-.-..+. +..|+.+.+..+|+++...
T Consensus 53 dp~RE~~vl~~~~~~a~----~~gl~p~~~~~i~~~ii~e 88 (104)
T PRK09239 53 DPAREAYQIERLRQLAK----DANLDPDFAEKFLNFIIKE 88 (104)
T ss_pred CHHHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHH
Confidence 45556666666555543 5789999999999998864
No 123
>PRK09849 putative oxidoreductase; Provisional
Probab=20.21 E-value=73 Score=31.18 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=27.1
Q ss_pred HHHHhhhCCCCCcHHHHHHHHhhCccccccccH
Q 030861 57 ESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTL 89 (170)
Q Consensus 57 ~~~~~DLgv~~ed~~~LvLa~~l~a~~mg~itr 89 (170)
-.+|.+||+|. +.-. +|||.+.+-..|.+++
T Consensus 370 n~Lcn~lGlDt-S~G~-tIA~amEl~ekGil~~ 400 (702)
T PRK09849 370 LNLFDDYGLWC-NYGQ-LHRDFTYCYSKGVFKR 400 (702)
T ss_pred HHHHHHhCCcc-cHHH-HHHHHHHHHHCCCCCc
Confidence 38899999999 6644 8999999999999986
No 124
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=20.00 E-value=60 Score=30.49 Aligned_cols=22 Identities=5% Similarity=-0.514 Sum_probs=18.7
Q ss_pred cccccHHHHHHHHHHhhccccc
Q 030861 141 RSLLYGIGIDKLLVFVLLFMLI 162 (170)
Q Consensus 141 qK~L~~e~Ai~~W~lll~~~~~ 162 (170)
.|+|++|.|+..|++++-+...
T Consensus 485 skslpldlacRIwDvy~rdgee 506 (586)
T KOG2223|consen 485 SKSLPLDLACRIWDVYCRDGEE 506 (586)
T ss_pred hccCChHHhhhhhheeeecchH
Confidence 6899999999999998876534
Done!