Query 030863
Match_columns 170
No_of_seqs 197 out of 1179
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 1.5E-35 5E-40 240.3 11.9 123 24-156 1-232 (248)
2 1kca_A Repressor protein CI; g 99.4 1.4E-12 4.8E-17 92.8 11.1 90 30-156 14-109 (109)
3 1umu_A UMUD'; induced mutagene 99.2 6.7E-11 2.3E-15 84.6 9.0 88 29-153 27-115 (116)
4 2hnf_A Repressor protein CI101 99.0 2E-09 6.9E-14 78.7 9.8 82 30-148 45-132 (133)
5 1jhf_A LEXA repressor; LEXA SO 99.0 2.3E-09 8E-14 83.0 9.6 87 30-152 111-199 (202)
6 3bdn_A Lambda repressor; repre 99.0 2.3E-09 7.8E-14 84.5 8.8 90 30-156 141-236 (236)
7 3k2z_A LEXA repressor; winged 98.7 1.7E-07 5.8E-12 72.4 10.5 85 29-150 109-194 (196)
8 2fjr_A Repressor protein CI; g 96.5 0.013 4.4E-07 43.9 8.3 66 56-151 122-187 (189)
9 3bbo_M Ribosomal protein L14; 78.0 16 0.00054 25.8 8.6 27 113-140 80-106 (121)
10 3v2d_O 50S ribosomal protein L 77.5 16 0.00056 25.8 8.6 28 111-139 78-105 (122)
11 3r8s_K 50S ribosomal protein L 76.9 14 0.00048 26.1 7.6 30 111-140 78-107 (122)
12 1w4s_A Polybromo, polybromo 1 67.6 6 0.0002 29.3 4.1 84 56-149 12-108 (174)
13 1whi_A Ribosomal protein L14; 65.3 28 0.00097 24.5 7.0 27 112-139 79-105 (122)
14 3nx6_A 10KDA chaperonin; bacte 53.3 24 0.00081 23.8 4.7 11 55-65 6-16 (95)
15 1pcq_O Groes protein; chaperon 51.2 31 0.0011 23.2 5.1 64 56-121 7-87 (97)
16 1p3h_A 10 kDa chaperonin; beta 43.8 41 0.0014 22.7 4.7 10 56-65 9-18 (99)
17 4dov_A ORC1, origin recognitio 43.2 83 0.0028 23.2 6.7 26 70-96 38-63 (163)
18 1we3_O CPN10(groes); chaperoni 41.8 26 0.0009 23.8 3.5 10 56-65 12-21 (100)
19 3i4o_A Translation initiation 37.1 23 0.00078 23.0 2.5 12 70-81 53-64 (79)
20 1jt8_A EIF-1A, probable transl 33.0 23 0.00079 24.1 2.1 11 71-81 59-69 (102)
21 2dgy_A MGC11102 protein; EIF-1 32.5 35 0.0012 23.5 3.0 11 71-81 54-64 (111)
22 3mt1_A Putative carboxynorsper 31.8 37 0.0013 27.7 3.6 24 56-82 298-321 (365)
23 3u5e_V L17A, YL32, 60S ribosom 28.3 1.6E+02 0.0056 21.0 7.1 30 110-140 93-122 (137)
24 3n29_A Carboxynorspermidine de 28.0 47 0.0016 27.8 3.6 24 56-82 352-375 (418)
25 2pp6_A Gifsy-2 prophage ATP-bi 27.1 74 0.0025 21.6 3.8 27 69-99 62-88 (102)
26 3vab_A Diaminopimelate decarbo 24.3 54 0.0018 27.6 3.3 24 56-82 371-394 (443)
27 7odc_A Protein (ornithine deca 22.2 59 0.002 27.1 3.2 23 56-81 363-385 (424)
28 2j66_A BTRK, decarboxylase; bu 22.1 71 0.0024 26.3 3.6 23 56-81 349-371 (428)
29 3n2b_A Diaminopimelate decarbo 21.0 74 0.0025 26.7 3.5 22 56-81 371-392 (441)
30 4dt4_A FKBP-type 16 kDa peptid 20.7 1.5E+02 0.0052 21.6 4.8 34 70-105 112-145 (169)
31 1wid_A DNA-binding protein RAV 20.3 1.2E+02 0.004 21.0 3.9 22 68-89 89-110 (130)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=1.5e-35 Score=240.27 Aligned_cols=123 Identities=32% Similarity=0.441 Sum_probs=107.0
Q ss_pred HHhceeEEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccc------------cCCCccceEEEEecCCCCCCceEE
Q 030863 24 VSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQ------------KYKFSHGDVIVFCSPSNHKEKHVK 91 (170)
Q Consensus 24 i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~------------~~~~~rGDiV~f~~p~~~~~~~vK 91 (170)
++.|+++++.|+|+||+|||.. ||+|+++|..|. ..++++||||+|+.|.+++..+||
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~----------GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iK 70 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIK 70 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCT----------TEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEE
T ss_pred CeEEEEEEEEeccccccccccC----------CCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEE
Confidence 4678999999999999999999 999999998653 258999999999999877889999
Q ss_pred EEEEeCCCeEeccCC-----------------------------------------------------------------
Q 030863 92 RIIGLPGDWIGTPMT----------------------------------------------------------------- 106 (170)
Q Consensus 92 RVvg~~GD~v~~~~~----------------------------------------------------------------- 106 (170)
||+|+|||+|++...
T Consensus 71 RViglpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~ 150 (248)
T 1b12_A 71 RAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSE 150 (248)
T ss_dssp EEEECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEE
T ss_pred EEEeeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhh
Confidence 999999999976211
Q ss_pred --------------------------------CCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCC
Q 030863 107 --------------------------------NDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQR 154 (170)
Q Consensus 107 --------------------------------~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~ 154 (170)
..+++||+|||||+|||+++|.|||+||+||+++|+|||.++|||+++
T Consensus 151 ~~e~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~ 230 (248)
T 1b12_A 151 RKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK 230 (248)
T ss_dssp EEEEETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred HHhhhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCc
Confidence 013589999999999999999999999999999999999999999987
Q ss_pred cc
Q 030863 155 VR 156 (170)
Q Consensus 155 ~g 156 (170)
.+
T Consensus 231 ~~ 232 (248)
T 1b12_A 231 QE 232 (248)
T ss_dssp --
T ss_pred cc
Confidence 64
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.43 E-value=1.4e-12 Score=92.81 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=71.9
Q ss_pred EEEEEcCCCcc------cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEec
Q 030863 30 SIVPVRGSSMS------PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 103 (170)
Q Consensus 30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~ 103 (170)
....|.|+||+ |+|.+ ||++++++.. +++.||+|++..+. ++..+||++..+
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~Vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~------ 71 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFKKLIRDS------ 71 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCCT----------TCEEEEETTS----CCCTTCEEEEECST--TCEEEEEEEEET------
T ss_pred EEEEEeCcCcCCCCCCCCeeCC----------CCEEEEecCC----cCCCCCEEEEEECC--CeEEEEEEEEeC------
Confidence 46889999999 99999 9999999865 68999999998753 478999999754
Q ss_pred cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCCcc
Q 030863 104 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVR 156 (170)
Q Consensus 104 ~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g 156 (170)
|++++.+||+... ....- ..-.|+|+|++.+||+..||
T Consensus 72 -----------~~~~L~s~N~~y~--~~~~~--~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 72 -----------GQVFLQPLNPQYP--MIPCN--ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp -----------TEEEEECSSTTSC--CEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred -----------CEEEEEECCCCCC--CEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence 4889999997321 22111 35689999999999987664
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.21 E-value=6.7e-11 Score=84.56 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=64.7
Q ss_pred eEEEEEcCCCccc-ccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCC
Q 030863 29 ASIVPVRGSSMSP-TFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 107 (170)
Q Consensus 29 ~~~~~v~~~SM~P-tl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~ 107 (170)
.....|.|+||+| ++.. ||++++++.. +++.||+|++..+ +...+||+...+
T Consensus 27 ~~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~gdivv~~~~---~~~~vKr~~~~~---------- 79 (116)
T 1umu_A 27 TYFVKASGDSMIDGGISD----------GDLLIVDSAI----TASHGDIVIAAVD---GEFTVKKLQLRP---------- 79 (116)
T ss_dssp EEEEECCSSTTGGGTCCT----------TCEEEEETTS----CCCTTCEEEEEET---TEEEEEEEECSS----------
T ss_pred EEEEEECCCCcCCCCCCC----------CCEEEEEcCC----CCCCCCEEEEEEC---CEEEEEEEEeCC----------
Confidence 4578999999999 8999 9999999865 6899999999874 478999998632
Q ss_pred CeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCC
Q 030863 108 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQ 153 (170)
Q Consensus 108 ~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~ 153 (170)
.+++.+||+. +....+..-..-.|+|+|++.+..+.
T Consensus 80 --------~~~L~s~N~~--y~~~~i~~~~~~~IiG~Vv~~~r~~r 115 (116)
T 1umu_A 80 --------TVQLIPMNSA--YSPITISSEDTLDVFGVVIHVVKAAT 115 (116)
T ss_dssp --------SCEEECSSTT--SCCEECCTTSCEEEEEEEEEEEC---
T ss_pred --------cEEEECCCCC--CCCEEcCCCCeEEEEEEEEEEEEecC
Confidence 5778899863 22222111123479999999887654
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=99.01 E-value=2e-09 Score=78.69 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=63.6
Q ss_pred EEEEEcCCCcc------cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEec
Q 030863 30 SIVPVRGSSMS------PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 103 (170)
Q Consensus 30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~ 103 (170)
...+|.|+||+ |++.. ||+|++++.. +++.||+|++..+. ++..+||+...+
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~------ 102 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFAKLIRDS------ 102 (133)
T ss_dssp EEEECCSSTTCCC---CCCCCT----------TCEEEEETTS----CCCTTSEEEEEETT--TEEEEEEEEEET------
T ss_pred EEEEEeCCCcCCCcCCCCccCC----------CCEEEEccCC----CCCCCCEEEEEECC--CEEEEEEEEEeC------
Confidence 46889999999 99999 9999999864 78999999998753 478999998643
Q ss_pred cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEE
Q 030863 104 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHI 148 (170)
Q Consensus 104 ~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~ 148 (170)
|.+++.+||+.. .....- ..-.|+|+|++.
T Consensus 103 -----------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 103 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp -----------TEEEEECSSTTS--CCEECS--TTEEEEEEEEEE
T ss_pred -----------CeEEEEECCCCC--CCEEcC--CCCEEEEEEEEE
Confidence 478899999732 122111 345799999875
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.98 E-value=2.3e-09 Score=83.00 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=64.8
Q ss_pred EEEEEcCCCcccc-cCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCC
Q 030863 30 SIVPVRGSSMSPT-FNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND 108 (170)
Q Consensus 30 ~~~~v~~~SM~Pt-l~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~ 108 (170)
....|.|+||+|+ +.+ ||++++++.. +++.||+|++... +...+||+. .++
T Consensus 111 ~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~G~i~v~~~~---~~~~vKrl~-~~~---------- 162 (202)
T 1jhf_A 111 FLLRVSGMSMKDIGIMD----------GDLLAVHKTQ----DVRNGQVVVARID---DEVTVKRLK-KQG---------- 162 (202)
T ss_dssp EEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTSEEEEEET---TEEEEEEEE-EET----------
T ss_pred EEEEECCCCCCCCCCCC----------CCEEEEeccC----CcCCCeEEEEEEC---CEEEEEEEE-EeC----------
Confidence 5688999999999 999 9999999764 6899999999873 578999998 454
Q ss_pred eEEccCCeEEEecCCCCCCCCCCcccc-ccCCCEeEEEEEEEeCC
Q 030863 109 VVKVPNGHCWVEGDNPSSSLDSRSFGP-IPLGLVKGRVTHILWPP 152 (170)
Q Consensus 109 ~~~vp~g~~~v~gDn~~~S~DSR~~G~-V~~~~I~Gkv~~~~~P~ 152 (170)
|.+++.+||+. +....+.+ -..-.|+|+|++.+..+
T Consensus 163 ------~~~~l~s~N~~--y~~~~~~~~~~~~~IiG~Vv~~~r~~ 199 (202)
T 1jhf_A 163 ------NKVELLPENSE--FKPIVVDLRQQSFTIEGLAVGVIRNG 199 (202)
T ss_dssp ------TEEEEECSSTT--CCCEEEETTTSCEEEEEEEEEEEEC-
T ss_pred ------CEEEEEECCCC--CCCEEccCCCCceEEEEEEEEEEEcc
Confidence 47888999863 22221110 11235999999988654
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.96 E-value=2.3e-09 Score=84.49 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=69.4
Q ss_pred EEEEEcCCCcc------cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEec
Q 030863 30 SIVPVRGSSMS------PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 103 (170)
Q Consensus 30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~ 103 (170)
....|.|+||+ |++.+ ||+|++++.. .++.||+|++... .+...+||+...+
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~~----------Gd~v~vd~~~----~~~~g~ivv~~~~--~~~~~vKrl~~~~------ 198 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLG--GDEFTFKKLIRGS------ 198 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCCS----------SCEEEECCSS----CCCTTSEEEEEST--TTCCCCEEEECCS------
T ss_pred EEEEEeCCCcCCCCCCCCcCCC----------CCEEEECCCC----CCCCCcEEEEEEC--CCeEEEEEEEEcC------
Confidence 46789999999 99999 9999998754 7899999999873 3578999998643
Q ss_pred cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCCcc
Q 030863 104 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVR 156 (170)
Q Consensus 104 ~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g 156 (170)
|.+++.+||+.. .....- ..-.|+|+|+..+||...|+
T Consensus 199 -----------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 199 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp -----------SSCEEECSSTTS--CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred -----------CcEEEEeCCCCC--CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 467888998632 222111 34579999999999987664
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.67 E-value=1.7e-07 Score=72.43 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=65.2
Q ss_pred eEEEEEcCCCc-ccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCC
Q 030863 29 ASIVPVRGSSM-SPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 107 (170)
Q Consensus 29 ~~~~~v~~~SM-~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~ 107 (170)
.....|.|+|| +|++.+ ||++++++.. .++.||+|++... ++..+||+.-.+
T Consensus 109 ~f~l~v~GdSM~~p~i~~----------GD~viv~~~~----~~~~G~ivv~~~~---~~~~vKr~~~~~---------- 161 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHICD----------GDLVLVRRQD----WAQNGDIVAAMVD---GEVTLAKFYQRG---------- 161 (196)
T ss_dssp EEEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTCEEEEEET---TEEEEEEEEEET----------
T ss_pred EEEEEEeCCCcCCCCCCC----------CCEEEEeccC----cCCCCCEEEEEEC---CcEEEEEEEEEC----------
Confidence 45789999999 699999 9999999864 7899999999874 578999997543
Q ss_pred CeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEe
Q 030863 108 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILW 150 (170)
Q Consensus 108 ~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~ 150 (170)
|.+++..||+.. .....- -..-.|+|+|+.++-
T Consensus 162 -------~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~r 194 (196)
T 3k2z_A 162 -------DTVELRPANREM--SSMFFR-AEKVKILGKVVGVFR 194 (196)
T ss_dssp -------TEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEEE
T ss_pred -------CEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEEE
Confidence 588899999732 222211 134589999998874
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=96.49 E-value=0.013 Score=43.88 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=47.1
Q ss_pred CcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeEEccCCeEEEecCCCCCCCCCCcccc
Q 030863 56 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGP 135 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~ 135 (170)
||+|++++- .+..|+++++... +...+||+.-.+| |.+.+..||+ + ...-
T Consensus 122 Gd~v~Vd~~-----~~~~g~i~vv~~~---g~~~vKrl~~~~~----------------~~i~L~s~N~----~-~~i~- 171 (189)
T 2fjr_A 122 GKIYFVDKQ-----ASLSDGLWLVDIK---GAISIRELTKLPG----------------RKLHVAGGKV----P-FECG- 171 (189)
T ss_dssp TEEEEEETT-----CCSCSEEEEEEET---TEEEEEEEEEETT----------------TEEEEESSSS----C-EEEE-
T ss_pred CcEEEEEcC-----CccCCCEEEEEeC---CeEEEEEEEECCC----------------CEEEEEeCCC----C-eEec-
Confidence 999999975 2567999999863 5789999987665 4677888886 1 1111
Q ss_pred ccCCCEeEEEEEEEeC
Q 030863 136 IPLGLVKGRVTHILWP 151 (170)
Q Consensus 136 V~~~~I~Gkv~~~~~P 151 (170)
...=.|+|||++.+-.
T Consensus 172 ~~~i~IiG~Vv~~~r~ 187 (189)
T 2fjr_A 172 IDDIKTLGRVVGVYSE 187 (189)
T ss_dssp TTSSEEEEEEEEEEEE
T ss_pred ccceEEEEEEEEEEEe
Confidence 1334699999987643
No 9
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=77.98 E-value=16 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=19.4
Q ss_pred cCCeEEEecCCCCCCCCCCccccccCCC
Q 030863 113 PNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 113 p~g~~~v~gDn~~~S~DSR~~G~V~~~~ 140 (170)
.++.+-++.++ .+..-+|-||||+++.
T Consensus 80 ddNa~Vlin~~-g~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 80 DDNAAVIIDQE-GNPKGTRIFGAIAREL 106 (121)
T ss_dssp SSCEEEECCTT-SSCSSSCCCSCCCGGG
T ss_pred CCceEEEECCC-CCEeEeEEEcCcCHHH
Confidence 34555555555 4788999999999764
No 10
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=77.47 E-value=16 Score=25.76 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=20.0
Q ss_pred EccCCeEEEecCCCCCCCCCCccccccCC
Q 030863 111 KVPNGHCWVEGDNPSSSLDSRSFGPIPLG 139 (170)
Q Consensus 111 ~vp~g~~~v~gDn~~~S~DSR~~G~V~~~ 139 (170)
...++.+-++.++ .+..-+|-||||+++
T Consensus 78 ~FddNa~Vlin~~-~~p~GTrI~GpVarE 105 (122)
T 3v2d_O 78 RFDDNAAVIINNQ-LEPRGTRVFGPVARE 105 (122)
T ss_dssp EESSCEEEEECTT-SCBSSSCBCSCBCTH
T ss_pred EcCCcEEEEECCC-CCEeeeEEEccchHH
Confidence 3345566666555 478899999999875
No 11
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=76.87 E-value=14 Score=26.11 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=21.1
Q ss_pred EccCCeEEEecCCCCCCCCCCccccccCCC
Q 030863 111 KVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 111 ~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~ 140 (170)
...++.+-++.++..+..-+|-||||+++.
T Consensus 78 ~FddNa~Vlin~~~g~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 78 RFDGNACVLLNNNSEQPIGTRIFGPVTREL 107 (122)
T ss_dssp EESSCEEEEEETTTEEESCSCBCSCCCGGG
T ss_pred EcCCceEEEEeCCCCCEeeeEEEccccHHH
Confidence 334566666666634678899999999764
No 12
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=67.58 E-value=6 Score=29.28 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=41.5
Q ss_pred CcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCC---eEec-------cCCC---CeEEccCCeEEEecC
Q 030863 56 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGD---WIGT-------PMTN---DVVKVPNGHCWVEGD 122 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD---~v~~-------~~~~---~~~~vp~g~~~v~gD 122 (170)
++......+.+....++.||-|.+..+.++...+|.||..+-.+ ...+ +.+. .....-++++|..
T Consensus 12 ~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~~~EvF~S-- 89 (174)
T 1w4s_A 12 LHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKS-- 89 (174)
T ss_dssp --------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEETTEEEEE--
T ss_pred CCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCCCCeeEEe--
Confidence 45555555544456899999999988765566788888764321 2222 1100 0011114455543
Q ss_pred CCCCCCCCCccccccCCCEeEEEEEEE
Q 030863 123 NPSSSLDSRSFGPIPLGLVKGRVTHIL 149 (170)
Q Consensus 123 n~~~S~DSR~~G~V~~~~I~Gkv~~~~ 149 (170)
.++--+|.+.|+||..-..
T Consensus 90 --------~~~d~~~~~~I~gkC~V~~ 108 (174)
T 1w4s_A 90 --------DYYNKVPVSKILGKCVVMF 108 (174)
T ss_dssp --------EEEEEEEGGGEEEEEEEEE
T ss_pred --------CCcceecHHHeeeeEEEEE
Confidence 2344688899999986444
No 13
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=65.33 E-value=28 Score=24.50 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=19.7
Q ss_pred ccCCeEEEecCCCCCCCCCCccccccCC
Q 030863 112 VPNGHCWVEGDNPSSSLDSRSFGPIPLG 139 (170)
Q Consensus 112 vp~g~~~v~gDn~~~S~DSR~~G~V~~~ 139 (170)
..++.+-++.++ .+..-+|-||||+++
T Consensus 79 FddNa~Vlin~~-g~p~GTrI~GPVarE 105 (122)
T 1whi_A 79 FDENACVIIRDD-KSPRGTRIFGPVARE 105 (122)
T ss_dssp CSSCEEEEECTT-SCBSSSCBCSCBCTH
T ss_pred eCCceEEEECCC-CCEeeeEEEccchHH
Confidence 335566666655 478899999999975
No 14
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=53.29 E-value=24 Score=23.76 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=8.2
Q ss_pred CCcEEEEEccc
Q 030863 55 SDDHVLMEKFC 65 (170)
Q Consensus 55 ~gd~vlv~k~~ 65 (170)
.+|+|++.+..
T Consensus 6 L~DRVlVk~~e 16 (95)
T 3nx6_A 6 LHDRVVVKPIE 16 (95)
T ss_dssp CTTEEEEEEC-
T ss_pred cCCEEEEEEcc
Confidence 38999998765
No 15
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=51.24 E-value=31 Score=23.22 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=31.2
Q ss_pred CcEEEEEccccc-------------cCCCccceEEEEecCC--CCCCceEEEEEEeCCCeEec-c-CCCCeEEccCCeEE
Q 030863 56 DDHVLMEKFCLQ-------------KYKFSHGDVIVFCSPS--NHKEKHVKRIIGLPGDWIGT-P-MTNDVVKVPNGHCW 118 (170)
Q Consensus 56 gd~vlv~k~~~~-------------~~~~~rGDiV~f~~p~--~~~~~~vKRVvg~~GD~v~~-~-~~~~~~~vp~g~~~ 118 (170)
+|+|++.+.... ..+++.|.+|..-.-. +.++ .+ -.--..||+|-+ . |...++++...+|.
T Consensus 7 ~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~-~~-p~~VkvGD~Vlf~k~y~Gtevk~dgeey~ 84 (97)
T 1pcq_O 7 HDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGE-VK-PLDVKVGDIVIFNDGYGVKSEKIDNEEVL 84 (97)
T ss_dssp SSEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSEECTTSSS-CE-ECSCCTTCEEEECCCSSCEEEEETTEEEE
T ss_pred CCEEEEEEccccccccceEEeCcccccCCcccEEEEEcCceecCCCC-EE-ecccCCCCEEEECCccCCeEEEECCEEEE
Confidence 799999876532 2345566666554311 1111 10 111345666655 2 34455555544455
Q ss_pred Eec
Q 030863 119 VEG 121 (170)
Q Consensus 119 v~g 121 (170)
++-
T Consensus 85 i~r 87 (97)
T 1pcq_O 85 IMS 87 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 16
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=43.80 E-value=41 Score=22.72 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=8.5
Q ss_pred CcEEEEEccc
Q 030863 56 DDHVLMEKFC 65 (170)
Q Consensus 56 gd~vlv~k~~ 65 (170)
+|+|++.+..
T Consensus 9 ~DRVlVk~~e 18 (99)
T 1p3h_A 9 EDKILVQANE 18 (99)
T ss_dssp TTEEEEEECC
T ss_pred CCEEEEEEcc
Confidence 8999998865
No 17
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=43.16 E-value=83 Score=23.21 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=19.6
Q ss_pred CCccceEEEEecCCCCCCceEEEEEEe
Q 030863 70 KFSHGDVIVFCSPSNHKEKHVKRIIGL 96 (170)
Q Consensus 70 ~~~rGDiV~f~~p~~~~~~~vKRVvg~ 96 (170)
.++.||.|+.+... ..+.+|-||..+
T Consensus 38 ~i~vGd~VLI~~~D-~~~PyVAki~~l 63 (163)
T 4dov_A 38 HIKVGQFVLIQGED-NKKPYVAKLIEL 63 (163)
T ss_dssp EEETTCEEEECCSS-SSCCEEEEEEEE
T ss_pred EEeeCCEEEEeCCc-ccCChhHHHHHH
Confidence 57888988886554 366788888887
No 18
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=41.80 E-value=26 Score=23.77 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=8.6
Q ss_pred CcEEEEEccc
Q 030863 56 DDHVLMEKFC 65 (170)
Q Consensus 56 gd~vlv~k~~ 65 (170)
+|+|++.+..
T Consensus 12 ~DRVlVk~~e 21 (100)
T 1we3_O 12 GDRVVVKRIE 21 (100)
T ss_dssp TTCEEEEECC
T ss_pred CCEEEEEEcc
Confidence 8999998875
No 19
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=37.05 E-value=23 Score=22.99 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=7.7
Q ss_pred CCccceEEEEec
Q 030863 70 KFSHGDVIVFCS 81 (170)
Q Consensus 70 ~~~rGDiV~f~~ 81 (170)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 466777777653
No 20
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=33.01 E-value=23 Score=24.12 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=7.1
Q ss_pred CccceEEEEec
Q 030863 71 FSHGDVIVFCS 81 (170)
Q Consensus 71 ~~rGDiV~f~~ 81 (170)
+.+||.|++..
T Consensus 59 I~~GD~VlVe~ 69 (102)
T 1jt8_A 59 VREGDVVIVKP 69 (102)
T ss_dssp CCSCEEEEECC
T ss_pred ecCCCEEEEEe
Confidence 56777777653
No 21
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.54 E-value=35 Score=23.52 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=7.6
Q ss_pred CccceEEEEec
Q 030863 71 FSHGDVIVFCS 81 (170)
Q Consensus 71 ~~rGDiV~f~~ 81 (170)
+.+||+|++..
T Consensus 54 I~~GD~VlVe~ 64 (111)
T 2dgy_A 54 IKRGDFLIVDP 64 (111)
T ss_dssp CCSSCEEEEEE
T ss_pred EcCCCEEEEEe
Confidence 56777777763
No 22
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=31.81 E-value=37 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=17.1
Q ss_pred CcEEEEEccccccCCCccceEEEEecC
Q 030863 56 DDHVLMEKFCLQKYKFSHGDVIVFCSP 82 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p 82 (170)
||++.-+... .+++.||+++|..-
T Consensus 298 ~D~l~~~~~~---~~l~~GD~l~~~~~ 321 (365)
T 3mt1_A 298 GDVFGEFRFA---EELKVGDRISFQDA 321 (365)
T ss_dssp SCEEEEEEES---SCCCTTCEEEESSC
T ss_pred cCEEcccccC---CCCCCCCEEEEecc
Confidence 8888643332 36899999999764
No 23
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=28.35 E-value=1.6e+02 Score=20.97 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=20.6
Q ss_pred EEccCCeEEEecCCCCCCCCCCccccccCCC
Q 030863 110 VKVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 110 ~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~ 140 (170)
....++.+-++.++ .+..-+|-||||+++.
T Consensus 93 i~FddNA~Vlin~~-g~p~GTrI~GPVarEl 122 (137)
T 3u5e_V 93 LYFEDNAGVIANPK-GEMKGSAITGPVGKEC 122 (137)
T ss_dssp EEESSCEEEEBCTT-CCBSSSCBCSCBCHHH
T ss_pred EEcCCceEEEECCC-CCEeeeEEEcchhHHH
Confidence 34445555555555 4788999999998753
No 24
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=27.96 E-value=47 Score=27.81 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=16.6
Q ss_pred CcEEEEEccccccCCCccceEEEEecC
Q 030863 56 DDHVLMEKFCLQKYKFSHGDVIVFCSP 82 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p 82 (170)
||++.-.... .+++.||+++|..-
T Consensus 352 ~D~l~~~~~~---~~l~~GD~l~~~~~ 375 (418)
T 3n29_A 352 GDVMGEYAFD---KKLKIGDKIVFLDQ 375 (418)
T ss_dssp TCEEEEEEES---SCCCTTCEEEESSC
T ss_pred CCEEeecccC---CCCCCCCEEEEeCc
Confidence 8888633322 36889999999763
No 25
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=27.13 E-value=74 Score=21.64 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=21.1
Q ss_pred CCCccceEEEEecCCCCCCceEEEEEEeCCC
Q 030863 69 YKFSHGDVIVFCSPSNHKEKHVKRIIGLPGD 99 (170)
Q Consensus 69 ~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD 99 (170)
..|++||.|++.- ..++++|---..|-
T Consensus 62 YrP~r~D~Vv~~G----k~y~Vtr~~~~ngk 88 (102)
T 2pp6_A 62 VIPRRGDRVVLRG----SEFTVTRIRRFNGK 88 (102)
T ss_dssp CCCCTTCEEEETT----EEEEEEEEEEETTE
T ss_pred cccCCCCEEEEcC----cEEEEEEEEEECCc
Confidence 3789999999974 57889987766653
No 26
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=24.31 E-value=54 Score=27.56 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=15.7
Q ss_pred CcEEEEEccccccCCCccceEEEEecC
Q 030863 56 DDHVLMEKFCLQKYKFSHGDVIVFCSP 82 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p 82 (170)
+|++.-+... .+++.||+++|..-
T Consensus 371 ~D~l~~~~~l---p~l~~GD~l~~~~~ 394 (443)
T 3vab_A 371 GDYLGLDREV---AKPAPGDLIAICTT 394 (443)
T ss_dssp TCEEEEEEEE---ECCCTTCEEEEESC
T ss_pred CCEEeeccCc---CCCCCCCEEEEeCC
Confidence 7776654432 25788888888763
No 27
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=22.25 E-value=59 Score=27.10 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=12.9
Q ss_pred CcEEEEEccccccCCCccceEEEEec
Q 030863 56 DDHVLMEKFCLQKYKFSHGDVIVFCS 81 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~ 81 (170)
||++.-+... .+++.||+++|..
T Consensus 363 ~D~l~~~~~L---p~l~~GD~l~~~~ 385 (424)
T 7odc_A 363 LDRIVERCNL---PEMHVGDWMLFEN 385 (424)
T ss_dssp TCEEEEEEEE---ECCCTTCEEEECS
T ss_pred CCEecccccC---CCCCCCCEEEECC
Confidence 6665543221 1567777777765
No 28
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=22.15 E-value=71 Score=26.34 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=13.2
Q ss_pred CcEEEEEccccccCCCccceEEEEec
Q 030863 56 DDHVLMEKFCLQKYKFSHGDVIVFCS 81 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~ 81 (170)
||.+..+... .+++.||+|+|..
T Consensus 349 ~D~l~~d~~l---p~~~~GD~l~~~~ 371 (428)
T 2j66_A 349 EDCLGKDVHV---PALYPGDLVCVLN 371 (428)
T ss_dssp TCEEEEEEEE---SCCCTTCEEEESS
T ss_pred CcEEEecccC---CCCCCCCEEEEeC
Confidence 5666655422 2566777777654
No 29
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=21.00 E-value=74 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=13.3
Q ss_pred CcEEEEEccccccCCCccceEEEEec
Q 030863 56 DDHVLMEKFCLQKYKFSHGDVIVFCS 81 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~ 81 (170)
+|++.-+... +++.||+++|..
T Consensus 371 ~D~l~~~~~l----~l~~GD~l~~~~ 392 (441)
T 3n2b_A 371 SDFLGKDRDL----VLQEGDLLAVRS 392 (441)
T ss_dssp TCEEEEEEEE----CCCTTCEEEESS
T ss_pred CCEEeecccc----CCCCCCEEEEeC
Confidence 6666544332 467777777765
No 30
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=20.73 E-value=1.5e+02 Score=21.57 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=27.7
Q ss_pred CCccceEEEEecCCCCCCceEEEEEEeCCCeEeccC
Q 030863 70 KFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPM 105 (170)
Q Consensus 70 ~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~ 105 (170)
+++.|+++.+..|. +..+.-+|..+.+|+|.++.
T Consensus 112 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~V~vD~ 145 (169)
T 4dt4_A 112 EPEIGAIMLFTAMD--GSEMPGVIREINGDSITVDF 145 (169)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEETTEEEEEC
T ss_pred CCCCCcEEEEECCC--CCEEEEEEEEEcCCEEEEeC
Confidence 58999999998764 45677889999999998843
No 31
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=20.26 E-value=1.2e+02 Score=20.99 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=15.3
Q ss_pred cCCCccceEEEEecCCCCCCce
Q 030863 68 KYKFSHGDVIVFCSPSNHKEKH 89 (170)
Q Consensus 68 ~~~~~rGDiV~f~~p~~~~~~~ 89 (170)
...++.||+|+|..-.+.+..+
T Consensus 89 ~~~L~~GD~~~F~~~~~~~~~l 110 (130)
T 1wid_A 89 EKNLRAGDVVSFSRSNGQDQQL 110 (130)
T ss_dssp HTTCCTTCEEEEEECCSSSCCE
T ss_pred HcCCCCCCEEEEEEecCCCcEE
Confidence 3678999999998754433333
Done!