BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030864
         (170 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Silicibacter Pomeroyi
          Length = 378

 Score = 34.7 bits (78), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 33/137 (24%)

Query: 12  PPEELVAAGSRTPSPKTTST---------ALVDRFLQTNSSAVSVQVGDNV--------- 53
           P  +L+  GSRTP P  +S          A++DR+ Q    A SV++G +V         
Sbjct: 122 PIADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRD 181

Query: 54  --------TLAYTHQNESPLRQRSFAV---KDEIFCLFEG---ALDNLGSLRQQYGLAKS 99
                    +     N    RQ++  V    +++  +FE     LD++ ++R  +    S
Sbjct: 182 VEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHVMFEQPGETLDDIAAIRPLHSAPVS 241

Query: 100 ANEVILVIE-AYKALRD 115
            +E ++ ++ A +  RD
Sbjct: 242 VDECLVTLQDAARVARD 258


>pdb|3PU9|A Chain A, Crystal Structure Of SerineTHREONINE PHOSPHATASE
           SPHAEROBACTER Thermophilus Dsm 20745
 pdb|3PU9|B Chain B, Crystal Structure Of SerineTHREONINE PHOSPHATASE
           SPHAEROBACTER Thermophilus Dsm 20745
          Length = 242

 Score = 30.0 bits (66), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 13  PEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH----QNESPLRQR 68
           P E +A G R   P+T + A+ D  L+    A   + GD+ T+        +   P+R+ 
Sbjct: 176 PLEFLATGGRVAGPETPAQAIADELLEAALVADDGRAGDDXTVVVLRLRNVEEVEPIRRX 235

Query: 69  SFAV 72
           +  V
Sbjct: 236 ALTV 239


>pdb|2PFB|A Chain A, Structure Of Oxidized Ohrr From Xanthamonas Campestris
 pdb|2PFB|B Chain B, Structure Of Oxidized Ohrr From Xanthamonas Campestris
          Length = 153

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 20  GSRTPSPKTTSTALVDRF----LQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDE 75
           G R      T T L+ R     L T + A S +    V +A T    + LR ++ AV ++
Sbjct: 68  GERLYLDSATLTPLLKRLQAAGLVTRTRAASDE--RQVIIALTETGRA-LRSKAGAVPEQ 124

Query: 76  IFCLFEGALDNLGSLRQQ 93
           +FC    +LD L  L+Q+
Sbjct: 125 VFCASASSLDELRQLKQE 142


>pdb|2PEX|A Chain A, Structure Of Reduced C22s Ohrr From Xanthamonas Campestris
 pdb|2PEX|B Chain B, Structure Of Reduced C22s Ohrr From Xanthamonas Campestris
          Length = 153

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 20  GSRTPSPKTTSTALVDRF----LQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDE 75
           G R      T T L+ R     L T + A S +    V +A T    + LR ++ AV ++
Sbjct: 68  GERLYLDSATLTPLLKRLQAAGLVTRTRAASDE--RQVIIALTETGRA-LRSKAGAVPEQ 124

Query: 76  IFCLFEGALDNLGSLRQQ 93
           +FC    +LD L  L+Q+
Sbjct: 125 VFCASACSLDELRQLKQE 142


>pdb|3I76|A Chain A, The Crystal Structure Of The Orthorhombic Form Of The
           Putative Had- Hydrolase Yfnb From Bacillus Subtilis
           Bound To Magnesium Reveals Interdomain Movement
 pdb|3I76|B Chain B, The Crystal Structure Of The Orthorhombic Form Of The
           Putative Had- Hydrolase Yfnb From Bacillus Subtilis
           Bound To Magnesium Reveals Interdomain Movement
 pdb|3I76|C Chain C, The Crystal Structure Of The Orthorhombic Form Of The
           Putative Had- Hydrolase Yfnb From Bacillus Subtilis
           Bound To Magnesium Reveals Interdomain Movement
          Length = 244

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 65  LRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           L Q+     +E   L +GA D + +L+QQ+ L    N V      YK LRD   +P
Sbjct: 89  LEQKYRRFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHT--QYKRLRDSGLFP 142


>pdb|1BG6|A Chain A, Crystal Structure Of The N-(1-D-Carboxylethyl)-L-Norvaline
           Dehydrogenase From Arthrobacter Sp. Strain 1c
          Length = 359

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 25  SPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKD--EIFCL--- 79
           +P  T  AL  R +   + A  V +G+  ++ +T ++E P +    A+K   +  CL   
Sbjct: 108 NPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAA 167

Query: 80  -FEGALDNLGSLRQQY 94
               AL+ +GS+  QY
Sbjct: 168 KAGWALEQIGSVLPQY 183


>pdb|3ED5|A Chain A, The Crystal Structure Of Yfnb From Bacillus Subtilis
           Subsp. Subtilis Str. 168
          Length = 238

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 65  LRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           L Q+     +E   L +GA D + +L+QQ+ L    N V      YK LRD   +P
Sbjct: 90  LEQKYRRFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHT--QYKRLRDSGLFP 143


>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
 pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
 pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non- Covalent Proteasome Inhibitor
 pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non- Covalent Proteasome Inhibitor
 pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Bortezomib
 pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Bortezomib
 pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
           Yeast 20s Proteasome
 pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
           Yeast 20s Proteasome
 pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
           Proteasome Inhibitors
 pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
           Proteasome Inhibitors
 pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
 pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
 pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
 pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
 pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
 pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
 pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Homobelactosin C
 pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Homobelactosin C
 pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
           The Epimer Form Of Spirolactacystin
 pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
           The Epimer Form Of Spirolactacystin
 pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Spirolactacystin
 pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Spirolactacystin
 pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Syringolin B
 pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Syringolin B
 pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Slow Substrate Ligand
 pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Slow Substrate Ligand
 pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Irreversible Inhibitor
           Ligand
 pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Irreversible Inhibitor
           Ligand
 pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
           Hydroxylated Salinosporamide
 pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
           Hydroxylated Salinosporamide
 pdb|1VSY|K Chain K, Proteasome Activator Complex
 pdb|1VSY|Y Chain Y, Proteasome Activator Complex
 pdb|3L5Q|O Chain O, Proteasome Activator Complex
 pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
 pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Ligand 2a
 pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Ligand 2a
 pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With 2b
 pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With 2b
 pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Ligand 2c
 pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Ligand 2c
 pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
 pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
 pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
 pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
 pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           6
 pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           6
 pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           8
 pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           8
 pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           16
 pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           16
 pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
           Structure Motif For Proteasome Inhibition
 pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
           Structure Motif For Proteasome Inhibition
 pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           24
 pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           24
 pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           25
 pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           25
 pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
 pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
 pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
 pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
 pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
 pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
 pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
 pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
 pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           20
 pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           20
 pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           34
 pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           34
 pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
           Syringolin-Glidobactin Chimera
 pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
           Syringolin-Glidobactin Chimera
 pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
           Proteasome
 pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
 pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
 pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
 pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
 pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
 pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu102
 pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu102
 pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu122
 pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu122
 pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu112
 pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu112
          Length = 198

 Score = 26.6 bits (57), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 86  NLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVG 126
            L S+R+ Y L+  A    +  E  K++R R PY  N ++G
Sbjct: 65  QLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIG 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,826,671
Number of Sequences: 62578
Number of extensions: 128828
Number of successful extensions: 294
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 9
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)