Query 030864
Match_columns 170
No_of_seqs 193 out of 330
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12481 DUF3700: Aluminium in 100.0 7.1E-62 1.5E-66 408.4 15.5 159 2-160 1-161 (228)
2 cd01910 Wali7 This domain is p 100.0 1.1E-57 2.3E-62 383.8 17.3 157 2-160 1-157 (224)
3 cd01909 betaLS_CarA_N Glutamin 99.9 6.1E-27 1.3E-31 193.7 10.0 81 72-160 48-132 (199)
4 COG0367 AsnB Asparagine syntha 99.9 8E-26 1.7E-30 209.2 10.6 110 42-161 32-151 (542)
5 PTZ00077 asparagine synthetase 99.9 1.1E-25 2.4E-30 210.0 11.5 100 53-160 54-157 (586)
6 PRK09431 asnB asparagine synth 99.9 4.6E-25 9.9E-30 204.5 13.9 111 42-161 33-151 (554)
7 TIGR01536 asn_synth_AEB aspara 99.9 5.2E-25 1.1E-29 197.6 12.4 109 42-160 30-149 (467)
8 PF13537 GATase_7: Glutamine a 99.9 4.2E-25 9.1E-30 167.3 8.7 93 65-161 13-109 (125)
9 PLN02549 asparagine synthase ( 99.9 1.1E-24 2.4E-29 203.1 13.4 111 42-161 33-150 (578)
10 TIGR03104 trio_amidotrans aspa 99.9 9.9E-25 2.1E-29 202.7 11.6 110 42-160 32-151 (589)
11 cd03766 Gn_AT_II_novel Gn_AT_I 99.9 1.3E-23 2.9E-28 169.8 10.8 121 31-161 22-152 (181)
12 TIGR03108 eps_aminotran_1 exos 99.9 1.5E-23 3.3E-28 194.6 11.8 109 42-160 33-151 (628)
13 cd00712 AsnB Glutamine amidotr 99.9 3.1E-22 6.7E-27 163.6 12.5 119 33-160 22-149 (220)
14 KOG0571 Asparagine synthase (g 99.8 3E-20 6.5E-25 169.7 7.0 108 48-164 44-153 (543)
15 cd00714 GFAT Glutamine amidotr 99.8 1.1E-18 2.4E-23 143.6 12.9 85 73-160 91-183 (215)
16 PRK08525 amidophosphoribosyltr 99.8 1.8E-18 3.9E-23 157.1 11.4 110 47-160 67-184 (445)
17 cd00352 Gn_AT_II Glutamine ami 99.8 6.7E-18 1.4E-22 134.2 12.3 96 65-161 88-189 (220)
18 PF13522 GATase_6: Glutamine a 99.8 4.9E-18 1.1E-22 130.7 11.0 105 47-160 14-123 (133)
19 PRK06388 amidophosphoribosyltr 99.7 6.1E-17 1.3E-21 148.7 11.6 111 47-160 84-202 (474)
20 PRK07631 amidophosphoribosyltr 99.7 5.5E-17 1.2E-21 149.1 11.0 93 65-160 95-194 (475)
21 cd01907 GlxB Glutamine amidotr 99.7 1.6E-16 3.4E-21 134.1 11.8 108 46-160 78-213 (249)
22 PRK09123 amidophosphoribosyltr 99.7 6.6E-17 1.4E-21 148.5 10.1 86 72-160 114-205 (479)
23 PRK08341 amidophosphoribosyltr 99.7 1.2E-16 2.7E-21 145.5 11.7 110 47-160 68-185 (442)
24 cd00715 GPATase_N Glutamine am 99.7 5.7E-16 1.2E-20 129.8 14.2 86 73-160 93-184 (252)
25 PRK07349 amidophosphoribosyltr 99.7 9.3E-17 2E-21 148.4 10.2 87 73-161 127-220 (500)
26 TIGR01135 glmS glucosamine--fr 99.7 2.8E-16 6.1E-21 145.5 13.4 86 72-160 90-183 (607)
27 PRK00331 glucosamine--fructose 99.7 1.1E-16 2.3E-21 148.3 10.6 86 72-160 91-184 (604)
28 PRK07272 amidophosphoribosyltr 99.7 2.5E-16 5.3E-21 145.1 10.8 86 72-160 104-195 (484)
29 PRK07847 amidophosphoribosyltr 99.7 5.1E-16 1.1E-20 143.8 10.3 87 73-161 118-215 (510)
30 PRK06781 amidophosphoribosyltr 99.6 1.3E-15 2.8E-20 139.8 11.7 85 73-160 104-194 (471)
31 PLN02440 amidophosphoribosyltr 99.6 1.6E-15 3.4E-20 139.2 10.6 82 73-160 94-184 (479)
32 PTZ00295 glucosamine-fructose- 99.6 1.9E-15 4.1E-20 141.7 10.3 109 47-160 97-214 (640)
33 PRK09246 amidophosphoribosyltr 99.6 2.8E-15 6.1E-20 138.1 10.8 96 65-161 85-195 (501)
34 PRK05793 amidophosphoribosyltr 99.6 4.2E-15 9.1E-20 136.1 10.3 88 72-161 108-200 (469)
35 TIGR01134 purF amidophosphorib 99.6 2.2E-14 4.8E-19 130.3 10.8 94 65-160 85-185 (442)
36 PTZ00394 glucosamine-fructose- 99.6 2E-14 4.4E-19 136.3 10.9 110 47-161 99-219 (670)
37 PLN02981 glucosamine:fructose- 99.5 2.2E-13 4.9E-18 129.2 10.2 111 47-161 88-213 (680)
38 COG0449 GlmS Glucosamine 6-pho 98.9 4.4E-09 9.4E-14 99.7 7.9 123 29-160 51-181 (597)
39 KOG0573 Asparagine synthase [A 98.8 1.3E-08 2.9E-13 94.1 7.7 78 72-158 67-144 (520)
40 COG0034 PurF Glutamine phospho 98.7 3.2E-08 7E-13 91.4 8.1 87 73-161 100-192 (470)
41 cd00713 GltS Glutamine amidotr 98.6 7E-07 1.5E-11 81.7 11.2 82 76-160 225-356 (413)
42 cd01908 YafJ Glutamine amidotr 98.4 8.9E-07 1.9E-11 74.6 7.4 86 74-162 106-209 (257)
43 KOG0572 Glutamine phosphoribos 98.4 1.1E-06 2.4E-11 80.5 7.8 96 62-162 89-196 (474)
44 PF00310 GATase_2: Glutamine a 98.1 1.9E-05 4.1E-10 70.9 9.6 85 74-161 217-350 (361)
45 TIGR03442 conserved hypothetic 97.8 5.8E-05 1.3E-09 64.3 6.9 82 74-160 109-212 (251)
46 KOG1268 Glucosamine 6-phosphat 97.3 0.00017 3.7E-09 68.5 3.7 78 71-150 105-195 (670)
47 PF09147 DUF1933: Domain of un 95.8 0.062 1.4E-06 45.3 8.4 78 74-159 47-128 (201)
48 PRK11750 gltB glutamate syntha 94.0 0.42 9.1E-06 50.4 10.4 32 124-157 332-363 (1485)
49 PF13230 GATase_4: Glutamine a 91.2 0.48 1E-05 40.9 5.5 73 74-149 101-187 (271)
50 TIGR03823 FliZ flagellar regul 37.5 24 0.00053 29.3 2.0 21 72-92 31-51 (168)
51 PRK11582 flagella biosynthesis 37.0 25 0.00055 29.2 2.0 21 72-92 31-51 (169)
52 COG0067 GltB Glutamate synthas 36.3 81 0.0018 29.2 5.4 34 76-109 226-263 (371)
53 PF14871 GHL6: Hypothetical gl 31.4 89 0.0019 24.3 4.2 33 30-62 2-34 (132)
54 PRK06764 hypothetical protein; 28.2 48 0.001 25.3 2.1 19 68-86 78-96 (105)
55 PF10984 DUF2794: Protein of u 26.1 1.4E+02 0.003 22.3 4.2 44 101-162 6-55 (85)
56 TIGR03477 DMSO_red_II_gam DMSO 25.8 52 0.0011 27.9 2.1 20 131-156 177-196 (205)
57 PF12594 DUF3764: Protein of u 25.7 28 0.0006 25.9 0.5 15 147-161 29-43 (86)
58 cd08351 ChaP_like ChaP, an enz 23.9 1.2E+02 0.0025 21.6 3.5 11 107-117 72-82 (123)
59 PF04756 OST3_OST6: OST3 / OST 23.8 26 0.00057 27.7 0.0 31 136-166 73-103 (160)
60 PRK05761 DNA polymerase I; Rev 23.7 81 0.0018 31.5 3.3 33 130-162 31-63 (787)
61 PF04566 RNA_pol_Rpb2_4: RNA p 23.5 2.1E+02 0.0046 19.6 4.5 47 102-158 13-60 (63)
62 PF09466 Yqai: Hypothetical pr 23.2 61 0.0013 23.4 1.8 23 74-96 38-64 (71)
63 PRK03946 pdxA 4-hydroxythreoni 21.4 89 0.0019 28.1 2.9 33 99-132 196-236 (307)
64 KOG0537 Cytochrome b5 [Energy 21.1 64 0.0014 25.1 1.7 23 72-94 17-39 (124)
65 COG1654 BirA Biotin operon rep 20.7 90 0.0019 22.6 2.3 29 88-122 23-51 (79)
No 1
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=7.1e-62 Score=408.40 Aligned_cols=159 Identities=48% Similarity=0.781 Sum_probs=154.3
Q ss_pred cccccccccCCccccccCCCCCCC--CCCChHHHHHHhhccCCCceEEEeCCceeeeEecCCCCCcccceecccCcEEEE
Q 030864 2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL 79 (170)
Q Consensus 2 Lavf~~~v~~~P~el~sp~~~~~~--~~~~~~~l~~~f~~~~p~a~~v~~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~v 79 (170)
||||+|+||++||||+||++..++ ++|+++||+++|+++||+||+|+||+++.|||++++|++++||+|++.|||||+
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 899999999999999999976443 699999999999999999999999999999999999999999999999999999
Q ss_pred EceeecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeE
Q 030864 80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSL 159 (170)
Q Consensus 80 FNGEIyN~~eLr~~~g~~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~ 159 (170)
|.|.|.|+..||||||++|++||+++||||||+||||||||++|||++|+|.|||||||+++++||+|||++|..|||-+
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred E
Q 030864 160 K 160 (170)
Q Consensus 160 ~ 160 (170)
.
T Consensus 161 i 161 (228)
T PF12481_consen 161 I 161 (228)
T ss_pred E
Confidence 4
No 2
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=1.1e-57 Score=383.82 Aligned_cols=157 Identities=61% Similarity=0.942 Sum_probs=151.2
Q ss_pred cccccccccCCccccccCCCCCCCCCCChHHHHHHhhccCCCceEEEeCCceeeeEecCCCCCcccceecccCcEEEEEc
Q 030864 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE 81 (170)
Q Consensus 2 Lavf~~~v~~~P~el~sp~~~~~~~~~~~~~l~~~f~~~~p~a~~v~~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFN 81 (170)
||||+|+||++||||+||++.+. ++++++|+++|+++||++++|++|+++.|||++++|++++||+|+++++++|+||
T Consensus 1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn 78 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ 78 (224)
T ss_pred CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence 89999999999999999987433 6788899999999999999999999999999999999999999999999999999
Q ss_pred eeecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 82 GEIyN~~eLr~~~g~~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
|||||+.+||++||+.++++|+++||++|++||||||||+++++++|+|||||||||++++++|+|||++|+|||||.+
T Consensus 79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~ 157 (224)
T cd01910 79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGI 157 (224)
T ss_pred eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEE
Confidence 9999999999999988999999999999999999999999999999999999999999999999999999999999975
No 3
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.94 E-value=6.1e-27 Score=193.71 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=73.1
Q ss_pred ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEE
Q 030864 72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~A 147 (170)
..++++++|||||||+.+||+++ |. .++.+|+|+|+++|++ || .+++++|+|||||+|||++ ++|++|
T Consensus 48 ~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~---~G----~~~l~~L~G~FAfai~D~~-~~L~la 119 (199)
T cd01909 48 RSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR---LG----LHAFRLAEGDFCFFIEDGN-GRLTLA 119 (199)
T ss_pred eCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH---Hh----HHHHHHcCEEEEEEEEcCC-CEEEEE
Confidence 44689999999999999999997 33 3889999999999996 56 4799999999999999999 999999
Q ss_pred eeCCCCcceeeEE
Q 030864 148 SVLAASHLLLSLK 160 (170)
Q Consensus 148 RDr~G~kPLY~~~ 160 (170)
|||+|+|||||..
T Consensus 120 RDr~GikPLYy~~ 132 (199)
T cd01909 120 TDHAGSVPVYLVQ 132 (199)
T ss_pred ECCCCCcCeEEEE
Confidence 9999999999863
No 4
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.93 E-value=8e-26 Score=209.18 Aligned_cols=110 Identities=19% Similarity=0.318 Sum_probs=89.2
Q ss_pred CCceEEEe------CCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhC---C-CCCCchHHHHHHHHH
Q 030864 42 SSAVSVQV------GDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYK 111 (170)
Q Consensus 42 p~a~~v~~------g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g---~-~ks~sE~~vii~aY~ 111 (170)
||...+-. |+ ..|+++...+ ..||+. ...++++++|||||||+.|||+++. + .+|++|+|||+++|+
T Consensus 32 PD~~g~~~~~~~~~gh-~rL~i~d~~~-g~QP~~-~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~ 108 (542)
T COG0367 32 PDDSGVWISLNALLGH-RRLSIVDLSG-GRQPMI-KEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYE 108 (542)
T ss_pred CCccccEecCCceeee-eEEEEecccc-CCCCcc-cCCCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHH
Confidence 87655544 44 6677776433 344432 2557799999999999999999874 4 489999999999999
Q ss_pred HhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864 112 ALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 112 ~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~ 161 (170)
+ || .+|+++|+|||||||||..+++||+|||++|+|||||-.-
T Consensus 109 ~---~g----~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~ 151 (542)
T COG0367 109 E---WG----EDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK 151 (542)
T ss_pred H---HH----HHHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec
Confidence 6 45 3699999999999999999999999999999999998653
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=210.00 Aligned_cols=100 Identities=22% Similarity=0.283 Sum_probs=83.7
Q ss_pred eeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCcccccccC
Q 030864 53 VTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHL 128 (170)
Q Consensus 53 ~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L 128 (170)
.+||++... ...|| +++..++++++|||||||+.+||+++ |+. ++.||+|+|+++|++ ||+ ++++++|
T Consensus 54 ~RLsIvd~~-~g~QP-~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~---~G~---~~~l~~L 125 (586)
T PTZ00077 54 ERLAIVDLS-DGKQP-LLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKE---YGP---KDFWNHL 125 (586)
T ss_pred ccceecCCC-CCCCC-cCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---hCH---HHHHHhc
Confidence 567776532 23344 34566899999999999999999997 443 899999999999996 552 3799999
Q ss_pred CceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 129 SGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 129 ~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
+|||||+|||.+++++++|||++|+|||||.+
T Consensus 126 ~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~ 157 (586)
T PTZ00077 126 DGMFATVIYDMKTNTFFAARDHIGIIPLYIGY 157 (586)
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCcCeEEEE
Confidence 99999999999999999999999999999964
No 6
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.92 E-value=4.6e-25 Score=204.48 Aligned_cols=111 Identities=16% Similarity=0.253 Sum_probs=89.8
Q ss_pred CCceEEEeCCc-----eeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhC--C-CCCCchHHHHHHHHHHh
Q 030864 42 SSAVSVQVGDN-----VTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--L-AKSANEVILVIEAYKAL 113 (170)
Q Consensus 42 p~a~~v~~g~~-----~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g--~-~ks~sE~~vii~aY~~~ 113 (170)
||...+...+. .+||+++. ....+| +++..++++++|||||||+.+||+++. + .++.||+|||+++|++
T Consensus 33 PD~~g~~~~~~~~lgh~RLsIid~-~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evil~ly~~- 109 (554)
T PRK09431 33 PDWSGIYASDNAILGHERLSIVDV-NGGAQP-LYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEVILALYQE- 109 (554)
T ss_pred CCcCCEEEeCCeEEEEEEeeecCC-CCCCCC-CCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHHHHHHHHH-
Confidence 88777654322 56677653 223333 345668999999999999999999974 3 3789999999999996
Q ss_pred hhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864 114 RDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 114 rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~ 161 (170)
|| .+++++|+|||||||||.+++++++|||++|+|||||.+.
T Consensus 110 --~G----~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~ 151 (554)
T PRK09431 110 --KG----PDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYD 151 (554)
T ss_pred --HH----HHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEe
Confidence 55 4799999999999999999999999999999999999753
No 7
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.92 E-value=5.2e-25 Score=197.58 Aligned_cols=109 Identities=20% Similarity=0.339 Sum_probs=89.9
Q ss_pred CCceEEE-------eCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHH
Q 030864 42 SSAVSVQ-------VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAY 110 (170)
Q Consensus 42 p~a~~v~-------~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY 110 (170)
||+..+- +|+ .+|++++... ..+| +.+..++++++|||||||+.+||+++ |+. ++.||+|+|+++|
T Consensus 30 PD~~g~~~~~~~~~lgh-~rl~i~d~~~-~~qP-~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y 106 (467)
T TIGR01536 30 PDASGIEYKDGNAILGH-RRLAIIDLSG-GAQP-MSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLY 106 (467)
T ss_pred CCcCCcEEccCCEEEEE-EEeEEeCCCC-CCCe-eECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHH
Confidence 7765543 444 6777776532 3566 44566789999999999999999987 443 7899999999999
Q ss_pred HHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 111 KALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 111 ~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
++| | .+++++|+|||||+|||..++++++|||++|+|||||..
T Consensus 107 ~~~---g----~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~ 149 (467)
T TIGR01536 107 EEW---G----EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAY 149 (467)
T ss_pred HHH---H----HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEE
Confidence 974 4 579999999999999999999999999999999999864
No 8
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.92 E-value=4.2e-25 Score=167.33 Aligned_cols=93 Identities=23% Similarity=0.354 Sum_probs=60.7
Q ss_pred cccceecccCcEEEEEceeecCHHHHHHHhCC----CCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCC
Q 030864 65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKS 140 (170)
Q Consensus 65 ~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g~----~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~ 140 (170)
.+|...+..++++++|||||||+.+|++++.. .++.+|+++++++|+.+.+|| .+++++|+|+|||++||++
T Consensus 13 ~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~~l~G~fa~v~~d~~ 88 (125)
T PF13537_consen 13 AQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLKRLDGPFAFVIWDKD 88 (125)
T ss_dssp ------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGGT--EEEEEEEEETT
T ss_pred ccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHHhCCceEEEEEEeCC
Confidence 34432246689999999999999999999843 378999999999999766778 5899999999999999999
Q ss_pred CCeEEEEeeCCCCcceeeEEE
Q 030864 141 TSTLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 141 ~~~lf~ARDr~G~kPLY~~~~ 161 (170)
++++|+|||+.|+|||||.+.
T Consensus 89 ~~~l~~~rD~~G~rpLyy~~~ 109 (125)
T PF13537_consen 89 KKRLFLARDRFGIRPLYYGRT 109 (125)
T ss_dssp E--EEEEE-TT--S--EEEEE
T ss_pred CcEEEEEECCCCCCCeEEEEe
Confidence 999999999999999998765
No 9
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.92 E-value=1.1e-24 Score=203.10 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=90.0
Q ss_pred CCceEEEeCCc-----eeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhC-C-CCCCchHHHHHHHHHHhh
Q 030864 42 SSAVSVQVGDN-----VTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-L-AKSANEVILVIEAYKALR 114 (170)
Q Consensus 42 p~a~~v~~g~~-----~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g-~-~ks~sE~~vii~aY~~~r 114 (170)
||+..+...+. .+|+++.. ....|| +++..++++++|||||||+.+||+++. + .+|.||+|||+++|++
T Consensus 33 PD~~g~~~~~~~~Lgh~RLsI~d~-~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~ly~~-- 108 (578)
T PLN02549 33 PDWSGLYGNEDCYLAHERLAIMDP-ESGDQP-LYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYEE-- 108 (578)
T ss_pred CCccCEEEeCCeEEEEeeeeEeCC-CCCCCC-cCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHHHHH--
Confidence 88766654322 45566553 334445 345667899999999999999999985 3 4899999999999996
Q ss_pred hcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864 115 DRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 115 drGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~ 161 (170)
|| .+++++|+|||||||||..++++++|||++|+|||||.+.
T Consensus 109 -~G----~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~ 150 (578)
T PLN02549 109 -HG----EEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWG 150 (578)
T ss_pred -HH----HHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEe
Confidence 45 4799999999999999999999999999999999999753
No 10
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.92 E-value=9.9e-25 Score=202.70 Aligned_cols=110 Identities=21% Similarity=0.353 Sum_probs=89.8
Q ss_pred CCceEEE------eCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHH
Q 030864 42 SSAVSVQ------VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYK 111 (170)
Q Consensus 42 p~a~~v~------~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~ 111 (170)
||+..+- +|+ ++|++++......+| +.+..++++++|||||||+.|||+++ |+. ++.||+|+|+++|+
T Consensus 32 PD~~g~~~~~~~~lgh-~rl~i~~~~~~~~QP-~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~ 109 (589)
T TIGR03104 32 PDAGGVHAQGPVALGH-RRLKIIDLSEASQQP-MVDAELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYH 109 (589)
T ss_pred CCcCCcEecCCEEEEE-EeeEecCCCcCCCCC-eECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHH
Confidence 8665543 444 566666543344555 34566789999999999999999986 553 88999999999999
Q ss_pred HhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 112 ALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 112 ~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
. || .+++++|+|||||+|||..++++++||||+|+|||||..
T Consensus 110 ~---~G----~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~ 151 (589)
T TIGR03104 110 A---WG----RDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAE 151 (589)
T ss_pred H---HH----HHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEE
Confidence 6 45 479999999999999999999999999999999999853
No 11
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.90 E-value=1.3e-23 Score=169.85 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=87.8
Q ss_pred HHHHHHhhccCCCceEEE----------eCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhCCCCCC
Q 030864 31 TALVDRFLQTNSSAVSVQ----------VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSA 100 (170)
Q Consensus 31 ~~l~~~f~~~~p~a~~v~----------~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g~~ks~ 100 (170)
.++++..+-+=||+..+. +++ ..|++... ....||-. ...++++++|||||||+.+||+ ++
T Consensus 22 ~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~-~rL~i~~~-~~~~QP~~-~~~~~~~lv~NGeIyN~~~l~~------s~ 92 (181)
T cd03766 22 EELLPNLRNRGPDYLSTRQLSVTNWTLLFTS-SVLSLRGD-HVTRQPLV-DQSTGNVLQWNGELYNIDGVED------EE 92 (181)
T ss_pred HHHHHHHHhcCCCccCCEEeeccccEEEEEe-eEEEecCC-CCCCCCCE-eCCCCEEEEECCEEECcccccC------CC
Confidence 345555544448764332 332 56667652 12233322 2336899999999999999987 78
Q ss_pred chHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864 101 NEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 101 sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~ 161 (170)
||+|+|+++|+++++. .-...+++++|+|+|||||||..++++++|||++|+|||||.+.
T Consensus 93 sDtEvi~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~ 152 (181)
T cd03766 93 NDTEVIFELLANCSSE-SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLD 152 (181)
T ss_pred CHHHHHHHHHHHHhhh-HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEee
Confidence 9999999999964410 00012699999999999999999999999999999999999875
No 12
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.90 E-value=1.5e-23 Score=194.61 Aligned_cols=109 Identities=19% Similarity=0.354 Sum_probs=89.0
Q ss_pred CCceEEE------eCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHH
Q 030864 42 SSAVSVQ------VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYK 111 (170)
Q Consensus 42 p~a~~v~------~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~ 111 (170)
||+..+- +|+ +.+++++. ....+| +.+..++++++|||||||+.|||+++ |.. ++.||+|+|+++|+
T Consensus 33 pD~~g~~~~~~~~lgh-~rl~i~d~-~~~~qP-~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~ 109 (628)
T TIGR03108 33 PDGGGVHVEPGIGLGH-RRLSIIDL-SGGQQP-LFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWE 109 (628)
T ss_pred CCccCeEeeCCEEEEE-EeeeecCC-CCCCCC-cCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHH
Confidence 8766544 444 56666653 233444 33566899999999999999999986 553 78999999999999
Q ss_pred HhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 112 ALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 112 ~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
+ || .+++++|+|||||+|||..++++++|||++|+|||||..
T Consensus 110 ~---~g----~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~ 151 (628)
T TIGR03108 110 E---WG----EACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYAL 151 (628)
T ss_pred H---HH----HHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEE
Confidence 7 44 479999999999999999999999999999999999863
No 13
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.88 E-value=3.1e-22 Score=163.60 Aligned_cols=119 Identities=17% Similarity=0.331 Sum_probs=90.7
Q ss_pred HHHHhhccCCCceEEEeCCceee-----eEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhCC----CCCCchH
Q 030864 33 LVDRFLQTNSSAVSVQVGDNVTL-----AYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEV 103 (170)
Q Consensus 33 l~~~f~~~~p~a~~v~~g~~~~l-----Ay~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g~----~ks~sE~ 103 (170)
++....-+-||+..+...+...+ +..... .-.+| +....+++++++||||||+.+|+++++. .++.||+
T Consensus 22 ~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~-~~~qP-~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~ 99 (220)
T cd00712 22 MLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLS-GGAQP-MVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDT 99 (220)
T ss_pred HHHHHhccCCCCCCEEEECCEEEEEEeeeecCcc-cCCCC-eEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChH
Confidence 33333333488777666443444 333322 23344 2334579999999999999999999743 3789999
Q ss_pred HHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 104 ILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 104 ~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
|+|+++|++ || .+++++|+|+|||++||.+++++++|||+.|.+||||..
T Consensus 100 e~l~~~~~~---~g----~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~ 149 (220)
T cd00712 100 EVILHLYEE---WG----EDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGR 149 (220)
T ss_pred HHHHHHHHH---Hh----HHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEE
Confidence 999999996 45 579999999999999999999999999999999999864
No 14
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.81 E-value=3e-20 Score=169.69 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=91.0
Q ss_pred EeCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhC-CC-CCCchHHHHHHHHHHhhhcCCCCccccc
Q 030864 48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-LA-KSANEVILVIEAYKALRDRAPYPPNHVV 125 (170)
Q Consensus 48 ~~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g-~~-ks~sE~~vii~aY~~~rdrGpyp~~~~l 125 (170)
.|++ .+||++.. .+.-+| +++..+.+.|..||||||+++||+.+. +. +|.+|+|+||++|++.| ..++.
T Consensus 44 ~l~h-eRLAIvdp-~sg~QP-i~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvIi~lY~khg------~~~~~ 114 (543)
T KOG0571|consen 44 ILGH-ERLAIVDP-TSGAQP-IVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSDCEVIIHLYEKHG------GEQAI 114 (543)
T ss_pred cccc-cceeEecC-CcCCcc-cccCCCcEEEEECceeccHHHHHHHhhhcccccCCCceeeeehHhhcC------chhHH
Confidence 4566 78999764 444555 667888999999999999999999875 53 77788888999999732 36899
Q ss_pred ccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEEccc
Q 030864 126 GHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKVVSS 164 (170)
Q Consensus 126 ~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~~~~ 164 (170)
..|+|||||+++|.+..++.+|||+.|++|||+++-+.+
T Consensus 115 ~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~g 153 (543)
T KOG0571|consen 115 CMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDG 153 (543)
T ss_pred HHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCC
Confidence 999999999999999999999999999999999876543
No 15
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.79 E-value=1.1e-18 Score=143.60 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred cCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---ccccccCCceEEEEEEeCCCC-eE
Q 030864 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKSTS-TL 144 (170)
Q Consensus 73 ~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp~---~~~l~~L~GmFAFviyD~~~~-~l 144 (170)
.+++.+++||+|||+.+||+++ |.. +++||+|+|+++|..+.+.|+-+. .+++++|+|+|||++||+.++ ++
T Consensus 91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l 170 (215)
T cd00714 91 DGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEI 170 (215)
T ss_pred CCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEE
Confidence 4689999999999999999987 553 889999999999998665442111 168999999999999999875 99
Q ss_pred EEEeeCCCCcceeeEE
Q 030864 145 FVASVLAASHLLLSLK 160 (170)
Q Consensus 145 f~ARDr~G~kPLY~~~ 160 (170)
++||| .||||+..
T Consensus 171 ~~~RD---~~PL~~~~ 183 (215)
T cd00714 171 VAARN---GSPLVIGI 183 (215)
T ss_pred EEEEC---CCCcEEEE
Confidence 99999 59999874
No 16
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.77 E-value=1.8e-18 Score=157.12 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=81.3
Q ss_pred EEeCCceeeeEecCC-CCCccccee-cccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCC
Q 030864 47 VQVGDNVTLAYTHQN-ESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP 120 (170)
Q Consensus 47 v~~g~~~~lAy~~~~-q~~~~~r~f-~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp 120 (170)
+-+|+ .++|..... ..-.||-.. +..++++++|||+|||+.+||+++ |. .+|+||+|+|+++|..+++ +...
T Consensus 67 ~~iGH-~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~~ 144 (445)
T PRK08525 67 IAIGH-NRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESLK 144 (445)
T ss_pred EEEee-cccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCHH
Confidence 44555 566654321 122445221 145789999999999999999986 55 3889999999999986431 1000
Q ss_pred --cccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 121 --PNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 121 --~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
..+++++|+|+|||+++|. ++++++||++|+||||++.
T Consensus 145 ea~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~ 184 (445)
T PRK08525 145 DRIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGR 184 (445)
T ss_pred HHHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEE
Confidence 1258999999999999995 7899999999999999974
No 17
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.76 E-value=6.7e-18 Score=134.23 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=77.6
Q ss_pred cccceecccCcEEEEEceeecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhhhcCC--CCcccccccCCceEEEEEEe
Q 030864 65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYD 138 (170)
Q Consensus 65 ~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g---~-~ks~sE~~vii~aY~~~rdrGp--yp~~~~l~~L~GmFAFviyD 138 (170)
.||-.... +++++++||+|||+.+|++++. . .++.||+|+|.++|..+++.+. --..+++++++|.|||+|||
T Consensus 88 ~hPf~~~~-~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d 166 (220)
T cd00352 88 AQPFRSED-GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWD 166 (220)
T ss_pred CCCcCcCC-CCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEE
Confidence 45533223 6999999999999999999864 2 4789999999999997553220 00136899999999999999
Q ss_pred CCCCeEEEEeeCCCCcceeeEEE
Q 030864 139 KSTSTLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 139 ~~~~~lf~ARDr~G~kPLY~~~~ 161 (170)
..+++++++||+.|.+|||+...
T Consensus 167 ~~~~~l~~~rd~~G~~pL~~~~~ 189 (220)
T cd00352 167 GKPDRLFAARDRFGIRPLYYGIT 189 (220)
T ss_pred CCCCEEEEEECCCCCCCeEEEEe
Confidence 99999999999999999998764
No 18
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.76 E-value=4.9e-18 Score=130.67 Aligned_cols=105 Identities=23% Similarity=0.290 Sum_probs=82.8
Q ss_pred EEeCCceeeeEecCC-CCCcccceecccCcEEEEEceeecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhhhcCCCCc
Q 030864 47 VQVGDNVTLAYTHQN-ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPP 121 (170)
Q Consensus 47 v~~g~~~~lAy~~~~-q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g---~-~ks~sE~~vii~aY~~~rdrGpyp~ 121 (170)
+-+|+ .++|-.... ...-||= -...+++++++||+|+|+.+||++++ . .++.||+|+|.+++.+ +|
T Consensus 14 ~~lgH-~R~AT~G~~~~~~~hPf-~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~~---~g---- 84 (133)
T PF13522_consen 14 AALGH-TRYATVGSPTEENNHPF-SNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIHR---WG---- 84 (133)
T ss_pred EEEEE-eecCCCCCCCCcCCCCC-cCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHHH---HH----
Confidence 44455 455554433 1112552 23557899999999999999999974 3 3789999999999964 44
Q ss_pred ccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 122 NHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 122 ~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
.+++++|+|+|+|++||...++++++||+.|++|||+..
T Consensus 85 ~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~ 123 (133)
T PF13522_consen 85 EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGR 123 (133)
T ss_pred HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEE
Confidence 578999999999999999999999999999999999765
No 19
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.71 E-value=6.1e-17 Score=148.71 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=81.9
Q ss_pred EEeCCceeeeEecCC-CCCccccee-cccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhh-hcCCC
Q 030864 47 VQVGDNVTLAYTHQN-ESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALR-DRAPY 119 (170)
Q Consensus 47 v~~g~~~~lAy~~~~-q~~~~~r~f-~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~r-drGpy 119 (170)
+-+|+ .++|..... ..-.||-.+ +..+++.+++||+|||+.+||+++ |. .+|+||+|||+++|.... .+|.-
T Consensus 84 ~gIGH-~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~ 162 (474)
T PRK06388 84 VGVGH-TRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLK 162 (474)
T ss_pred EEEee-eeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHH
Confidence 45555 666665432 122344322 245789999999999999999997 55 389999999999995432 33310
Q ss_pred -CcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 120 -PPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 120 -p~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
-..+++++|+|+|||+|++. ++++++||+.|+||||+++
T Consensus 163 eai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~ 202 (474)
T PRK06388 163 EGFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGK 202 (474)
T ss_pred HHHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEe
Confidence 01358999999999999975 7899999999999999875
No 20
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.71 E-value=5.5e-17 Score=149.10 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=74.0
Q ss_pred ccccee-cccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCC--CcccccccCCceEEEEEE
Q 030864 65 LRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY--PPNHVVGHLSGYFAFIVY 137 (170)
Q Consensus 65 ~~~r~f-~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpy--p~~~~l~~L~GmFAFviy 137 (170)
.||-.+ ...+++++++||+|||+.+||+++ |. .+++||+|||+++|.+++... + -..+++++|+|+|||++|
T Consensus 95 ~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~-~~eai~~~~~~l~G~yalvi~ 173 (475)
T PRK07631 95 VQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPT-LKEQIKNALSMLKGAYAFLLM 173 (475)
T ss_pred cCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhCCCCceeeEE
Confidence 455321 345789999999999999999987 55 389999999999998643110 0 002588999999999999
Q ss_pred eCCCCeEEEEeeCCCCcceeeEE
Q 030864 138 DKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 138 D~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
|. +.+++|||+.|+||||+++
T Consensus 174 ~~--~~l~aaRDp~GirPL~~G~ 194 (475)
T PRK07631 174 TE--TELYVALDPNGLRPLSIGR 194 (475)
T ss_pred eC--CEEEEEECCCCCCCEEEEE
Confidence 96 6799999999999999975
No 21
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.70 E-value=1.6e-16 Score=134.06 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=78.8
Q ss_pred EEEeCCceeeeEecC-CCCCcccceecccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhh-hcCCC
Q 030864 46 SVQVGDNVTLAYTHQ-NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALR-DRAPY 119 (170)
Q Consensus 46 ~v~~g~~~~lAy~~~-~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~r-drGpy 119 (170)
.+-+|+ .++|.... ...-.||-. . +++++++||+|||+.+||+++ |. ..+.||+|+|+++|+.+. ++| .
T Consensus 78 ~~~igH-~R~aT~g~~~~~n~qP~~--~-~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g-~ 152 (249)
T cd01907 78 YHWIAH-TRQPTNSAVWWYGAHPFS--I-GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGG-L 152 (249)
T ss_pred EEEEEE-EeccCCCCCCccCCCCee--c-CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCC-C
Confidence 355565 55554321 111334421 1 489999999999999999986 44 378999999999987533 334 2
Q ss_pred Ccc----------------------cccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 120 PPN----------------------HVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 120 p~~----------------------~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
+.+ .++++|+|+|||+++|. +.++++||++|.||||+++
T Consensus 153 ~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~ 213 (249)
T cd01907 153 PLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAE 213 (249)
T ss_pred hHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEE
Confidence 222 58899999999999986 4589999999999999875
No 22
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.70 E-value=6.6e-17 Score=148.48 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=71.2
Q ss_pred ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCC--cccccccCCceEEEEEEeCCCCeEE
Q 030864 72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLF 145 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp--~~~~l~~L~GmFAFviyD~~~~~lf 145 (170)
..+++++++||+|||+.+||+++ |. .+++||+|+|+++|..+.. +.+. ..+++++|+|+|||++||. ++++
T Consensus 114 ~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~~eai~~~~~~L~G~ya~vil~~--~~l~ 190 (479)
T PRK09123 114 EFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASFLDRFIDALRQVEGAYSLVALTN--TKLI 190 (479)
T ss_pred CCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhcceeEEEEEC--CEEE
Confidence 35789999999999999999997 44 3889999999999986431 1000 0368999999999999996 6899
Q ss_pred EEeeCCCCcceeeEE
Q 030864 146 VASVLAASHLLLSLK 160 (170)
Q Consensus 146 ~ARDr~G~kPLY~~~ 160 (170)
++||++|++|||++.
T Consensus 191 a~RD~~GirPL~~g~ 205 (479)
T PRK09123 191 GARDPLGIRPLVLGE 205 (479)
T ss_pred EEECCCCCCceEEEE
Confidence 999999999999875
No 23
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.69 E-value=1.2e-16 Score=145.50 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=78.0
Q ss_pred EEeCCceeeeEecCCCCCccccee-cccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hhhcCCC-
Q 030864 47 VQVGDNVTLAYTHQNESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKA-LRDRAPY- 119 (170)
Q Consensus 47 v~~g~~~~lAy~~~~q~~~~~r~f-~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~-~rdrGpy- 119 (170)
+-+|+ .++|.... ..-.+|-.. ...+++.+++||+|||+.+||+++ |. .+|+||+|||.+++.. +.++|..
T Consensus 68 ~~IGH-~R~sT~G~-~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~ 145 (442)
T PRK08341 68 LAIGH-VRYSTSGS-LSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEF 145 (442)
T ss_pred EEEEE-eeccccCC-CcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 44555 55655442 122333111 234789999999999999999987 54 3888999998776532 2234421
Q ss_pred -CcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 120 -PPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 120 -p~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
-..+++++|+|+|||+|.+. ++++++||+.|+||||++.
T Consensus 146 ~ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~ 185 (442)
T PRK08341 146 EAMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGE 185 (442)
T ss_pred HHHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEE
Confidence 00146899999999999986 7899999999999999874
No 24
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.69 E-value=5.7e-16 Score=129.83 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=70.6
Q ss_pred cCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--cccccccCCceEEEEEEeCCCCeEEE
Q 030864 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLFV 146 (170)
Q Consensus 73 ~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp--~~~~l~~L~GmFAFviyD~~~~~lf~ 146 (170)
.+++++++||+|||+.+||+++ |.. ++.||+|+|+++|..+.+.+... ..+++++|+|+|||++||. +++++
T Consensus 93 ~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~~ 170 (252)
T cd00715 93 LGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLIA 170 (252)
T ss_pred CCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEEE
Confidence 4789999999999999999986 332 78899999999998654210000 0158999999999999998 99999
Q ss_pred EeeCCCCcceeeEE
Q 030864 147 ASVLAASHLLLSLK 160 (170)
Q Consensus 147 ARDr~G~kPLY~~~ 160 (170)
+||+.|.+|||+.+
T Consensus 171 ~RD~~G~~PL~~~~ 184 (252)
T cd00715 171 VRDPHGIRPLVLGK 184 (252)
T ss_pred EECCCCCCCeEEEE
Confidence 99999999999865
No 25
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.69 E-value=9.3e-17 Score=148.43 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=71.8
Q ss_pred cCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCC-CC--cccccccCCceEEEEEEeCCCCeEE
Q 030864 73 KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAP-YP--PNHVVGHLSGYFAFIVYDKSTSTLF 145 (170)
Q Consensus 73 ~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGp-yp--~~~~l~~L~GmFAFviyD~~~~~lf 145 (170)
.+++++++||+|||+.+||+++ |. .+++||+|||+++|....+.|. +. ..+++++|+|+|||+|.|. ++++
T Consensus 127 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~ 204 (500)
T PRK07349 127 LGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTP--EGLM 204 (500)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeC--CEEE
Confidence 4789999999999999999987 54 3899999999999976433331 11 1358899999999999875 6799
Q ss_pred EEeeCCCCcceeeEEE
Q 030864 146 VASVLAASHLLLSLKV 161 (170)
Q Consensus 146 ~ARDr~G~kPLY~~~~ 161 (170)
++||+.|+||||+++.
T Consensus 205 aaRDp~GiRPL~~G~~ 220 (500)
T PRK07349 205 GVRDPNGIRPLVIGTL 220 (500)
T ss_pred EEECCCCCCCeEEEec
Confidence 9999999999999853
No 26
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.69 E-value=2.8e-16 Score=145.54 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=71.1
Q ss_pred ccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---ccccccCCceEEEEEEeCCC-Ce
Q 030864 72 VKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-ST 143 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp~---~~~l~~L~GmFAFviyD~~~-~~ 143 (170)
..+++.+++||+|||+.+||+++ |+. +++||+|+|+++|..+++.|+-+. .+++++|+|||||+|||+.+ ++
T Consensus 90 ~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~ 169 (607)
T TIGR01135 90 EGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPET 169 (607)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCE
Confidence 44789999999999999999997 443 789999999999998665442110 16899999999999999887 46
Q ss_pred EEEEeeCCCCcceeeEE
Q 030864 144 LFVASVLAASHLLLSLK 160 (170)
Q Consensus 144 lf~ARDr~G~kPLY~~~ 160 (170)
++++||. ||||+++
T Consensus 170 l~~~Rd~---~PL~~~~ 183 (607)
T TIGR01135 170 LVAARSG---SPLIVGL 183 (607)
T ss_pred EEEEECC---CceEEEE
Confidence 9999994 9999875
No 27
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.69 E-value=1.1e-16 Score=148.30 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=72.5
Q ss_pred ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCCc---ccccccCCceEEEEEEeCCC-Ce
Q 030864 72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-ST 143 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp~---~~~l~~L~GmFAFviyD~~~-~~ 143 (170)
..+++.+++||+|||+.+||+++ |+ .+++||+|+|+++|..+.++|.-+. .+++++|+|+|||+|||+.+ ++
T Consensus 91 ~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~ 170 (604)
T PRK00331 91 CSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDT 170 (604)
T ss_pred CCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCE
Confidence 34889999999999999999987 55 3789999999999998655552111 25899999999999999997 99
Q ss_pred EEEEeeCCCCcceeeEE
Q 030864 144 LFVASVLAASHLLLSLK 160 (170)
Q Consensus 144 lf~ARDr~G~kPLY~~~ 160 (170)
+++|||. ||||++.
T Consensus 171 l~~~Rd~---~PL~~g~ 184 (604)
T PRK00331 171 IVAARNG---SPLVIGL 184 (604)
T ss_pred EEEEECC---CceEEEE
Confidence 9999995 9999874
No 28
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.67 E-value=2.5e-16 Score=145.11 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=71.1
Q ss_pred ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCC--CcccccccCCceEEEEEEeCCCCeEE
Q 030864 72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY--PPNHVVGHLSGYFAFIVYDKSTSTLF 145 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpy--p~~~~l~~L~GmFAFviyD~~~~~lf 145 (170)
..+++.+++||+|||+.+||+++ |. .+|+||+|||+++|..... +.+ -..+++++|+|+|||+++|. ++++
T Consensus 104 ~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~~i~~~--~~l~ 180 (484)
T PRK07272 104 HDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PTFMGKLKEALNTVKGGFAYLLLTE--DKLI 180 (484)
T ss_pred CCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHccCceeEEEEEC--CEEE
Confidence 35789999999999999999997 54 3889999999999986321 100 01258899999999999986 6899
Q ss_pred EEeeCCCCcceeeEE
Q 030864 146 VASVLAASHLLLSLK 160 (170)
Q Consensus 146 ~ARDr~G~kPLY~~~ 160 (170)
++||+.|+||||+++
T Consensus 181 a~RDp~GirPL~~G~ 195 (484)
T PRK07272 181 AALDPNGFRPLSIGK 195 (484)
T ss_pred EEECCCCCCcEEEEE
Confidence 999999999999975
No 29
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.65 E-value=5.1e-16 Score=143.84 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=72.1
Q ss_pred cCcEEEEEceeecCHHHHHHHh---CC------CCCCchHHHHHHHHHHhhhcCCCC--cccccccCCceEEEEEEeCCC
Q 030864 73 KDEIFCLFEGALDNLGSLRQQY---GL------AKSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKST 141 (170)
Q Consensus 73 ~~~i~~vFNGEIyN~~eLr~~~---g~------~ks~sE~~vii~aY~~~rdrGpyp--~~~~l~~L~GmFAFviyD~~~ 141 (170)
.+++.+++||+|||+.+||+++ |. .+++||+|+|++++..+.+.|... ..+++++|+|+|||++||.
T Consensus 118 ~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~-- 195 (510)
T PRK07847 118 GGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE-- 195 (510)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--
Confidence 5889999999999999999987 43 379999999999998754322110 0158999999999999996
Q ss_pred CeEEEEeeCCCCcceeeEEE
Q 030864 142 STLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 142 ~~lf~ARDr~G~kPLY~~~~ 161 (170)
++++++||+.|++|||+++.
T Consensus 196 ~~L~aaRDp~GirPL~~g~~ 215 (510)
T PRK07847 196 HTLYAARDPQGVRPLVLGRL 215 (510)
T ss_pred CEEEEEECCCCCCCcEEEEE
Confidence 68999999999999998763
No 30
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.64 E-value=1.3e-15 Score=139.81 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=70.4
Q ss_pred cCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCC--CcccccccCCceEEEEEEeCCCCeEEE
Q 030864 73 KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY--PPNHVVGHLSGYFAFIVYDKSTSTLFV 146 (170)
Q Consensus 73 ~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpy--p~~~~l~~L~GmFAFviyD~~~~~lf~ 146 (170)
.+++.+++||+|||+.+||+++ |. .+++||+|+|+++|..+.. +.. -..+++++|+|+|||+++|. +++++
T Consensus 104 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a 180 (471)
T PRK06781 104 DHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTK-DSLIESVKEALNKVKGAFAYLLLTG--NEMIV 180 (471)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCcEEEEEEEC--CEEEE
Confidence 5789999999999999999997 44 3889999999999986431 100 01246899999999999995 78999
Q ss_pred EeeCCCCcceeeEE
Q 030864 147 ASVLAASHLLLSLK 160 (170)
Q Consensus 147 ARDr~G~kPLY~~~ 160 (170)
|||+.|+||||++.
T Consensus 181 aRD~~GirPL~~g~ 194 (471)
T PRK06781 181 ALDPNGFRPLSIGK 194 (471)
T ss_pred EECCCCCCCeEEEE
Confidence 99999999999875
No 31
>PLN02440 amidophosphoribosyltransferase
Probab=99.63 E-value=1.6e-15 Score=139.19 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=69.9
Q ss_pred cCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhh-----hcCCCCcccccccCCceEEEEEEeCCCCe
Q 030864 73 KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALR-----DRAPYPPNHVVGHLSGYFAFIVYDKSTST 143 (170)
Q Consensus 73 ~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~r-----drGpyp~~~~l~~L~GmFAFviyD~~~~~ 143 (170)
.+++++++||+|+|+.+||+++ |. .+++||+|+|+++|..+. +++ .+++++|+|+|||++||. ++
T Consensus 94 ~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~----~~~~~~l~G~fa~vi~~~--~~ 167 (479)
T PLN02440 94 FGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRI----VDACEKLKGAYSMVFLTE--DK 167 (479)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHH----HHHHHHhccceeeeEEEC--CE
Confidence 4689999999999999999987 43 378999999999997532 223 468999999999999996 56
Q ss_pred EEEEeeCCCCcceeeEE
Q 030864 144 LFVASVLAASHLLLSLK 160 (170)
Q Consensus 144 lf~ARDr~G~kPLY~~~ 160 (170)
++++||+.|+||||++.
T Consensus 168 l~a~RD~~G~RPL~~g~ 184 (479)
T PLN02440 168 LVAVRDPHGFRPLVMGR 184 (479)
T ss_pred EEEEECCCCCCceEEEE
Confidence 99999999999999974
No 32
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.62 E-value=1.9e-15 Score=141.69 Aligned_cols=109 Identities=16% Similarity=0.214 Sum_probs=81.1
Q ss_pred EEeCCceeeeEecCC-CCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC-
Q 030864 47 VQVGDNVTLAYTHQN-ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP- 120 (170)
Q Consensus 47 v~~g~~~~lAy~~~~-q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp- 120 (170)
+-+|| .++|..... ..-.||-. ...+++.+++||+|||+.+||+++ |.. +++||+|+|+++|....++|.-+
T Consensus 97 ~~igH-~R~at~g~~~~~n~qP~~-~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~ 174 (640)
T PTZ00295 97 IGIAH-TRWATHGGKTDENAHPHC-DYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQ 174 (640)
T ss_pred EEEEE-eccccCCCCCcCCCCCCC-CCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHH
Confidence 45555 666664421 11234422 234799999999999999999986 553 88999999999987554555211
Q ss_pred --cccccccCCceEEEEEEeCC-CCeEEEEeeCCCCcceeeEE
Q 030864 121 --PNHVVGHLSGYFAFIVYDKS-TSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 121 --~~~~l~~L~GmFAFviyD~~-~~~lf~ARDr~G~kPLY~~~ 160 (170)
..+++++|+|+|||++||+. .++++++||+ ||||++.
T Consensus 175 ~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~ 214 (640)
T PTZ00295 175 EAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGI 214 (640)
T ss_pred HHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEE
Confidence 12589999999999999987 5899999997 9999875
No 33
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.61 E-value=2.8e-15 Score=138.11 Aligned_cols=96 Identities=14% Similarity=0.106 Sum_probs=72.6
Q ss_pred cccceecccCcEEEEEceeecCHHHHHHHh----CC-CCCCchHHHHHHHHHHhhhc--CC--CCcc------cccccCC
Q 030864 65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQY----GL-AKSANEVILVIEAYKALRDR--AP--YPPN------HVVGHLS 129 (170)
Q Consensus 65 ~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~----g~-~ks~sE~~vii~aY~~~rdr--Gp--yp~~------~~l~~L~ 129 (170)
.||-.....+++.+++||+|||+.+||+++ +. .+++||+|+|+++|.++... |. -+.+ +++++|+
T Consensus 85 ~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~ 164 (501)
T PRK09246 85 AQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVR 164 (501)
T ss_pred CCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcc
Confidence 455332333459999999999999999986 22 38999999999999865322 20 0111 5889999
Q ss_pred ceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864 130 GYFAFIVYDKSTSTLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 130 GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~ 161 (170)
|+|||++|. ..++++++||++|+||||+++.
T Consensus 165 Gays~v~~~-~~~~l~a~RDp~GirPL~~g~~ 195 (501)
T PRK09246 165 GAYAVVAMI-IGHGLVAFRDPHGIRPLVLGKR 195 (501)
T ss_pred cceeeEEEe-cCCcEEEEECCCCCCCeEEEee
Confidence 999999884 3456999999999999999854
No 34
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.60 E-value=4.2e-15 Score=136.10 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=71.6
Q ss_pred ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCC-CcccccccCCceEEEEEEeCCCCeEEE
Q 030864 72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY-PPNHVVGHLSGYFAFIVYDKSTSTLFV 146 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpy-p~~~~l~~L~GmFAFviyD~~~~~lf~ 146 (170)
..+++.+++||+|||+.+||+++ |. .+++||+|+|++++.++...++- -..+++++|+|+|||+++|. +++++
T Consensus 108 ~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a 185 (469)
T PRK05793 108 KLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIG 185 (469)
T ss_pred CCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEE
Confidence 35789999999999999999986 44 37899999999999864321110 00158899999999999986 78999
Q ss_pred EeeCCCCcceeeEEE
Q 030864 147 ASVLAASHLLLSLKV 161 (170)
Q Consensus 147 ARDr~G~kPLY~~~~ 161 (170)
+||+.|+||||+++.
T Consensus 186 ~RD~~GirPL~~g~~ 200 (469)
T PRK05793 186 VRDPHGIRPLCLGKL 200 (469)
T ss_pred EECCCCCCCcEEEEE
Confidence 999999999998753
No 35
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.55 E-value=2.2e-14 Score=130.29 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=72.0
Q ss_pred cccceecccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCC---cccccccCCceEEEEEE
Q 030864 65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP---PNHVVGHLSGYFAFIVY 137 (170)
Q Consensus 65 ~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp---~~~~l~~L~GmFAFviy 137 (170)
.||-.....+.+++++||+|+|+.+||+++ |. .++.||+|+|+++|..++..+.-. ..+++++|+|+|||++|
T Consensus 85 ~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~ 164 (442)
T TIGR01134 85 AQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIM 164 (442)
T ss_pred CCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEE
Confidence 455322223459999999999999999986 43 378999999999998743111000 02588999999999999
Q ss_pred eCCCCeEEEEeeCCCCcceeeEE
Q 030864 138 DKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 138 D~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
|. ++++++||+.|.+|||++.
T Consensus 165 ~~--~~L~a~RD~~G~rPL~~g~ 185 (442)
T TIGR01134 165 IG--DGLIAVRDPHGIRPLVLGK 185 (442)
T ss_pred EC--CEEEEEECCCCCCCcEEEE
Confidence 74 6899999999999999864
No 36
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.55 E-value=2e-14 Score=136.31 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=80.7
Q ss_pred EEeCCceeeeEecCC-CCCcccceecccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hhhcCCCC
Q 030864 47 VQVGDNVTLAYTHQN-ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKA-LRDRAPYP 120 (170)
Q Consensus 47 v~~g~~~~lAy~~~~-q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~-~rdrGpyp 120 (170)
+-+|+ .++|..... ..-.||-. ...+++++|+||+||||.+||+++ |. .+|+||+|||+++.+. +.+||...
T Consensus 99 ~~igH-~R~at~g~~~~~n~qP~~-~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~ 176 (670)
T PTZ00394 99 VGIAH-TRWATHGGVCERNCHPQQ-SNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHN 176 (670)
T ss_pred EEEEE-eeceecCCCCcCCCCCcC-CCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCC
Confidence 55666 777775532 22335532 346899999999999999999996 55 3889999999976432 22355211
Q ss_pred c----ccccccCCceEEEEEEeCC-CCeEEEEeeCCCCcceeeEEE
Q 030864 121 P----NHVVGHLSGYFAFIVYDKS-TSTLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 121 ~----~~~l~~L~GmFAFviyD~~-~~~lf~ARDr~G~kPLY~~~~ 161 (170)
. .+++++|+|||||+|.+.. .+++++|||+ +||+.+.-
T Consensus 177 ~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~ 219 (670)
T PTZ00394 177 FADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIR 219 (670)
T ss_pred HHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEec
Confidence 1 1689999999999999644 5999999999 99998875
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.46 E-value=2.2e-13 Score=129.25 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=77.5
Q ss_pred EEeCCceeeeEecCC-CCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHH-hhhcCCC-
Q 030864 47 VQVGDNVTLAYTHQN-ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA-LRDRAPY- 119 (170)
Q Consensus 47 v~~g~~~~lAy~~~~-q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~-~rdrGpy- 119 (170)
+-+|| .++|..... ..-.||-.-+..+.+++++||+|||+.+||+++ |.. +|+||+|||+++.+. ++.+|+.
T Consensus 88 ~~IGH-~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~ 166 (680)
T PLN02981 88 AGIAH-TRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEE 166 (680)
T ss_pred EEEEE-cccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhccccc
Confidence 44455 555554321 122344322235789999999999999999986 553 899999999998432 2245531
Q ss_pred C---c----ccccccCCceEEEEEEeCCC-CeEEEEeeCCCCcceeeEEE
Q 030864 120 P---P----NHVVGHLSGYFAFIVYDKST-STLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 120 p---~----~~~l~~L~GmFAFviyD~~~-~~lf~ARDr~G~kPLY~~~~ 161 (170)
+ . .+++++|+|+|||+|.++.. +++++|||. +||..+..
T Consensus 167 ~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~ 213 (680)
T PLN02981 167 GDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVK 213 (680)
T ss_pred CCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEec
Confidence 0 0 14899999999999999775 999999995 78776643
No 38
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=4.4e-09 Score=99.69 Aligned_cols=123 Identities=16% Similarity=0.237 Sum_probs=84.4
Q ss_pred ChHHHHHHhhccCCCceEEEeCCceeeeEecCCCC--CcccceecccCcEEEEEceeecCHHHHHHHh---CC-CCCCch
Q 030864 29 TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNES--PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANE 102 (170)
Q Consensus 29 ~~~~l~~~f~~~~p~a~~v~~g~~~~lAy~~~~q~--~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE 102 (170)
+..+| +.-....|-.-.+-+|| .++|= |+..+ --||- +. +++.+|.||-|.||.+||++| |+ .+|+||
T Consensus 51 kv~~l-~~~~~~~~~~~~~gIgH-TRWAT-HG~P~~~NAHPh-~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TD 124 (597)
T COG0449 51 KISNL-EELLNKEPLIGGVGIAH-TRWAT-HGGPTRANAHPH-SD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTD 124 (597)
T ss_pred CHHHH-HhhhcccccCCceeeee-ccccC-CCCCCcCCCCCC-CC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCc
Confidence 34444 33333444333444555 56654 43322 34553 22 899999999999999999997 66 389999
Q ss_pred HHHHHHHHHHhhhcCCCC-cccccccCCceEEEEEEeCCC-CeEEEEeeCCCCcceeeEE
Q 030864 103 VILVIEAYKALRDRAPYP-PNHVVGHLSGYFAFIVYDKST-STLFVASVLAASHLLLSLK 160 (170)
Q Consensus 103 ~~vii~aY~~~rdrGpyp-~~~~l~~L~GmFAFviyD~~~-~~lf~ARDr~G~kPLY~~~ 160 (170)
||||-|+....-+.|..- ...++++|+|.||+++.|... +++++||-. .||.-+.
T Consensus 125 TEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~~---sPL~iG~ 181 (597)
T COG0449 125 TEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKG---SPLVIGV 181 (597)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEEcCC---CCeEEEe
Confidence 999999986543333110 125899999999999999997 899999863 5888654
No 39
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=98.80 E-value=1.3e-08 Score=94.09 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=63.3
Q ss_pred ccCcEEEEEceeecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCC
Q 030864 72 VKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLA 151 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~~~g~~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~ 151 (170)
++++++..|||||||-.. +.+..|+..|.+....+++-| ...+.++.++|.|||++||.++++||..||++
T Consensus 67 ~d~~~vfl~NGeIyn~~~-------s~~~~d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~ 137 (520)
T KOG0573|consen 67 EDDRYVFLFNGEIYNGEK-------SDTLFDTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDDI 137 (520)
T ss_pred cccceEEEecceeccCCC-------ccccchHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEecccc
Confidence 556699999999999542 455668888888888776544 23467888999999999999999999999999
Q ss_pred CCcceee
Q 030864 152 ASHLLLS 158 (170)
Q Consensus 152 G~kPLY~ 158 (170)
|++-|-|
T Consensus 138 GRrSLly 144 (520)
T KOG0573|consen 138 GRRSLLY 144 (520)
T ss_pred cceeeeE
Confidence 9998763
No 40
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.73 E-value=3.2e-08 Score=91.39 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=69.1
Q ss_pred cCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhh-cCCC-CcccccccCCceEEEEEEeCCCCeEEE
Q 030864 73 KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRD-RAPY-PPNHVVGHLSGYFAFIVYDKSTSTLFV 146 (170)
Q Consensus 73 ~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rd-rGpy-p~~~~l~~L~GmFAFviyD~~~~~lf~ 146 (170)
.+.+.+.+||.|-|..+||+++ |. ..+++|+|+|++++..-.+ .+.. ...++++++.|-||+++..+. .|++
T Consensus 100 ~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~~~~~--~lia 177 (470)
T COG0034 100 GGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIKD--GLIA 177 (470)
T ss_pred CCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEEEECC--eEEE
Confidence 4679999999999999999997 44 3788999999999975221 1110 012577899999999999764 9999
Q ss_pred EeeCCCCcceeeEEE
Q 030864 147 ASVLAASHLLLSLKV 161 (170)
Q Consensus 147 ARDr~G~kPLY~~~~ 161 (170)
+||+.|++||-.++.
T Consensus 178 ~RDP~GiRPL~iG~~ 192 (470)
T COG0034 178 VRDPNGIRPLVLGKL 192 (470)
T ss_pred EECCCCCccceeeec
Confidence 999999999986654
No 41
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.55 E-value=7e-07 Score=81.72 Aligned_cols=82 Identities=9% Similarity=0.039 Sum_probs=63.5
Q ss_pred EEEEEceeecCHHHHHHHh------------C---------CCCCCchHHHHHHHHHHhhhcCCCCcc------------
Q 030864 76 IFCLFEGALDNLGSLRQQY------------G---------LAKSANEVILVIEAYKALRDRAPYPPN------------ 122 (170)
Q Consensus 76 i~~vFNGEIyN~~eLr~~~------------g---------~~ks~sE~~vii~aY~~~rdrGpyp~~------------ 122 (170)
-+++.||||+|+..+|... | ...+.||++++.++.+.|-..|. +..
T Consensus 225 r~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~-~l~~A~~mliPeaw~ 303 (413)
T cd00713 225 RYLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGR-SLPEAMMMLIPEAWQ 303 (413)
T ss_pred eeEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCC-CHHHHHHHhCChhhc
Confidence 3589999999999998653 1 12468888888888876654453 222
Q ss_pred -----------------cccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 123 -----------------HVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 123 -----------------~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
.+...++|.||+++-|. +.+.++|||+|.+||+|+.
T Consensus 304 ~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~~~~ 356 (413)
T cd00713 304 NNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPARYVI 356 (413)
T ss_pred cCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceEEEE
Confidence 23477999999999985 7899999999999999873
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=98.40 E-value=8.9e-07 Score=74.58 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=65.5
Q ss_pred CcEEEEEceeecCHHHHHHHhC----C-CCCCchHHHHHHHHHHhh-hcCCC-------CcccccccCC-----ceEEEE
Q 030864 74 DEIFCLFEGALDNLGSLRQQYG----L-AKSANEVILVIEAYKALR-DRAPY-------PPNHVVGHLS-----GYFAFI 135 (170)
Q Consensus 74 ~~i~~vFNGEIyN~~eLr~~~g----~-~ks~sE~~vii~aY~~~r-drGpy-------p~~~~l~~L~-----GmFAFv 135 (170)
++++++.||.|+|+.+||..+. . .+++||+|++.+...... +.++- -..+.++.|+ |.|+|+
T Consensus 106 ~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~n~~ 185 (257)
T cd01908 106 GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAPPGRLNLL 185 (257)
T ss_pred CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCcCeEEEEE
Confidence 4899999999999999998863 2 378888888888776532 22221 0124677888 789999
Q ss_pred EEeCCCCeEEEEeeCCCCcceeeEEEc
Q 030864 136 VYDKSTSTLFVASVLAASHLLLSLKVV 162 (170)
Q Consensus 136 iyD~~~~~lf~ARDr~G~kPLY~~~~~ 162 (170)
+-|. .+++++||+. ..||||....
T Consensus 186 ~~dg--~~l~a~r~~~-~~~L~~~~~~ 209 (257)
T cd01908 186 LSDG--EYLIATRYAS-APSLYYLTRR 209 (257)
T ss_pred EECC--CEEEEEEeCC-CCceEEEecc
Confidence 8886 7799999999 8999988754
No 43
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.37 E-value=1.1e-06 Score=80.45 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHH-----hhhcCC-CCc--ccccccCC
Q 030864 62 ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA-----LRDRAP-YPP--NHVVGHLS 129 (170)
Q Consensus 62 q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~-----~rdrGp-yp~--~~~l~~L~ 129 (170)
||.... +..+.+.+..||++-|+++||+++ |.. .|+||+|+|++.+.. +|..+| |++ .++.+.++
T Consensus 89 QPFvv~---t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~~~ 165 (474)
T KOG0572|consen 89 QPFVVN---TPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLP 165 (474)
T ss_pred cceEee---ccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHhcC
Confidence 554443 356789999999999999999986 332 677888888887652 111222 111 15778899
Q ss_pred ceEEEEEEeCCCCeEEEEeeCCCCcceeeEEEc
Q 030864 130 GYFAFIVYDKSTSTLFVASVLAASHLLLSLKVV 162 (170)
Q Consensus 130 GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~~ 162 (170)
|.|+.++.-. +.+++.||++|.+||-.+..+
T Consensus 166 g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~ 196 (474)
T KOG0572|consen 166 GAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRS 196 (474)
T ss_pred CceeEEEEEc--cEEEEEecCCCCccceEeeec
Confidence 9999998844 559999999999999976654
No 44
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=98.10 E-value=1.9e-05 Score=70.95 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=58.3
Q ss_pred CcEEEEEceeecCHHHHHHHh---CC-CCC----------------CchHHHHHHHHHHhhhcCCCCcc-----------
Q 030864 74 DEIFCLFEGALDNLGSLRQQY---GL-AKS----------------ANEVILVIEAYKALRDRAPYPPN----------- 122 (170)
Q Consensus 74 ~~i~~vFNGEIyN~~eLr~~~---g~-~ks----------------~sE~~vii~aY~~~rdrGpyp~~----------- 122 (170)
.-.+++-||||.|+..++..+ +. .++ .||++++.++.+.+-..| ++..
T Consensus 217 Pf~~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g-~~l~~a~~~l~p~~~ 295 (361)
T PF00310_consen 217 PFRALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRG-RSLEEAMMMLIPPAW 295 (361)
T ss_dssp SEEEEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTT-SSHHHHHHHHSGG--
T ss_pred hHHHhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHhhCCccc
Confidence 344999999999999999874 32 133 889998988888777777 1111
Q ss_pred ------------------cccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864 123 ------------------HVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV 161 (170)
Q Consensus 123 ------------------~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~ 161 (170)
.+...++|-||+++-|.. .++++|||.|.+|+.++..
T Consensus 296 ~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g~--~~~a~~Dr~GLRP~~~~~~ 350 (361)
T PF00310_consen 296 ENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDGN--GVGAFLDRNGLRPLRYGIT 350 (361)
T ss_dssp TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECSS--EEEEEE-TT--S--EEEEE
T ss_pred ccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeCC--EEEEEECCCCCcceEEEEE
Confidence 346779999999999764 5999999999999987644
No 45
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=97.81 E-value=5.8e-05 Score=64.32 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=60.4
Q ss_pred CcEEEEEceeecCHH-----HHHHHh---CC--CCCCchHHHHHHHHHHhh-hcCCCCcc----cccccCCce-------
Q 030864 74 DEIFCLFEGALDNLG-----SLRQQY---GL--AKSANEVILVIEAYKALR-DRAPYPPN----HVVGHLSGY------- 131 (170)
Q Consensus 74 ~~i~~vFNGEIyN~~-----eLr~~~---g~--~ks~sE~~vii~aY~~~r-drGpyp~~----~~l~~L~Gm------- 131 (170)
++++++.||.|.|+. +|++++ ++ .+++||+|++.+++.... +..|.... ++++.|.|.
T Consensus 109 g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~ 188 (251)
T TIGR03442 109 GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLILFSAAAAPRVR 188 (251)
T ss_pred CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhCcccc
Confidence 689999999999998 566554 22 378888888888776543 32222212 456666777
Q ss_pred EEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864 132 FAFIVYDKSTSTLFVASVLAASHLLLSLK 160 (170)
Q Consensus 132 FAFviyD~~~~~lf~ARDr~G~kPLY~~~ 160 (170)
|.|++-|. .++++.||+. |||+++
T Consensus 189 ~n~~~sdg--~~l~a~R~~~---~L~~~~ 212 (251)
T TIGR03442 189 LNLLLTDG--SRLVATRWAD---TLYWLK 212 (251)
T ss_pred eEEEEEcC--CEEEEEEeCC---eEEEEE
Confidence 99999984 8899999998 999875
No 46
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=97.34 E-value=0.00017 Score=68.55 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=59.8
Q ss_pred cccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--------cccccccCCceEEEEEEe
Q 030864 71 AVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--------PNHVVGHLSGYFAFIVYD 138 (170)
Q Consensus 71 ~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp--------~~~~l~~L~GmFAFviyD 138 (170)
...+...+|.||-|-||++||.-+ |+. .++||+|+|-.+|..+-|.- | .+.++++|+|-||++.=-
T Consensus 105 d~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~--~~~~~F~~lv~~v~k~lEGaFalvfkS 182 (670)
T KOG1268|consen 105 DPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTS--PEDLDFHVLVELVLKELEGAFGLLFKS 182 (670)
T ss_pred CCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhC--CCcccHHHHHHHHHHHhhhHHHHHHHh
Confidence 456788999999999999999875 663 67888888888887654433 4 467899999999998753
Q ss_pred CC-CCeEEEEeeC
Q 030864 139 KS-TSTLFVASVL 150 (170)
Q Consensus 139 ~~-~~~lf~ARDr 150 (170)
+. -+++.+.|+.
T Consensus 183 ~hfP~e~Va~Rrg 195 (670)
T KOG1268|consen 183 SHFPGEVVAARKG 195 (670)
T ss_pred hcCCcceeeeccC
Confidence 22 3788888764
No 47
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=95.82 E-value=0.062 Score=45.28 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=54.8
Q ss_pred CcEEEEEceeecCHHHHHHHhCC----CCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEee
Q 030864 74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASV 149 (170)
Q Consensus 74 ~~i~~vFNGEIyN~~eLr~~~g~----~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARD 149 (170)
++...--=|.|||-.-|+.-.|. .-.-||+|+++-.|-.|+ ...+.--+|.|.|.|=| +++++-+-.|
T Consensus 47 ~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG-------~~aLsLAEGdfcffiE~-kng~L~l~Td 118 (201)
T PF09147_consen 47 ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLG-------NSALSLAEGDFCFFIED-KNGELTLITD 118 (201)
T ss_dssp TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH--------GGGGGG--SSEEEEEEE-TTSEEEEEE-
T ss_pred cCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhh-------hhhhhhhcCceEEEEec-CCCcEEEEec
Confidence 34444445999999999988764 257899999999998766 57999999999999876 5789999999
Q ss_pred CCCCcceeeE
Q 030864 150 LAASHLLLSL 159 (170)
Q Consensus 150 r~G~kPLY~~ 159 (170)
+-|--|.|-+
T Consensus 119 s~G~~pv~lV 128 (201)
T PF09147_consen 119 SRGFNPVYLV 128 (201)
T ss_dssp SSSSS-EEEE
T ss_pred CCCCceEEEE
Confidence 9999999954
No 48
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=94.05 E-value=0.42 Score=50.43 Aligned_cols=32 Identities=6% Similarity=-0.138 Sum_probs=28.4
Q ss_pred ccccCCceEEEEEEeCCCCeEEEEeeCCCCccee
Q 030864 124 VVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLL 157 (170)
Q Consensus 124 ~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY 157 (170)
+..-++|-||+++-|. +.+.+.|||+|.+||-
T Consensus 332 lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr 363 (1485)
T PRK11750 332 HMEPWDGPAGIVMTDG--RYAACNLDRNGLRPAR 363 (1485)
T ss_pred hcccCCCCEEEEEEeC--CEEEEecCCCCCccce
Confidence 5556799999999985 8999999999999993
No 49
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=91.19 E-value=0.48 Score=40.88 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=42.9
Q ss_pred CcEEEEEceeecCHHHHHHH-hCCCCCCchHHHHHHHH-HHhhhcCCC---Ccc-------cccccCC--ceEEEEEEeC
Q 030864 74 DEIFCLFEGALDNLGSLRQQ-YGLAKSANEVILVIEAY-KALRDRAPY---PPN-------HVVGHLS--GYFAFIVYDK 139 (170)
Q Consensus 74 ~~i~~vFNGEIyN~~eLr~~-~g~~ks~sE~~vii~aY-~~~rdrGpy---p~~-------~~l~~L~--GmFAFviyD~ 139 (170)
++++.+.||.|+++..++.. |- ..++||.|.+...+ ..+++.++. ..+ +.+++++ |.+.|++.|-
T Consensus 101 ~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsDG 179 (271)
T PF13230_consen 101 RRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSDG 179 (271)
T ss_dssp TTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE-S
T ss_pred CcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEECC
Confidence 68999999999999887732 43 35566666555554 344444420 011 2233443 7899999997
Q ss_pred CCCeEEEEee
Q 030864 140 STSTLFVASV 149 (170)
Q Consensus 140 ~~~~lf~ARD 149 (170)
.++|+-|+
T Consensus 180 --~~l~a~~~ 187 (271)
T PF13230_consen 180 --ERLFAHRY 187 (271)
T ss_dssp --S-EEEEEE
T ss_pred --ceEEEEEc
Confidence 68999998
No 50
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=37.52 E-value=24 Score=29.25 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.9
Q ss_pred ccCcEEEEEceeecCHHHHHH
Q 030864 72 VKDEIFCLFEGALDNLGSLRQ 92 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~ 92 (170)
..|+|.+||||+|=|=..+.+
T Consensus 31 ~LDRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 31 LLDRISLVFRGQIINKESISR 51 (168)
T ss_pred hhhheeeeecceeecHHHHHH
Confidence 458999999999999887763
No 51
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=37.01 E-value=25 Score=29.17 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.8
Q ss_pred ccCcEEEEEceeecCHHHHHH
Q 030864 72 VKDEIFCLFEGALDNLGSLRQ 92 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~ 92 (170)
..|+|.+||||+|=|=..+.+
T Consensus 31 ~LDRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 31 LLDRITLVFRGQIINKIAISR 51 (169)
T ss_pred chhheeeeecceeecHHHHHH
Confidence 458999999999999887763
No 52
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=36.25 E-value=81 Score=29.15 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=21.1
Q ss_pred EEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHH
Q 030864 76 IFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEA 109 (170)
Q Consensus 76 i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~a 109 (170)
-+++.||||.|+.-.|.-. |. -++.+++|++-++
T Consensus 226 r~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l 263 (371)
T COG0067 226 RLLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKL 263 (371)
T ss_pred eeeeecceecccccHHHHHHHhhcccccCccHHHHHHH
Confidence 3559999999999877542 32 2455555443333
No 53
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=31.42 E-value=89 Score=24.31 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=27.9
Q ss_pred hHHHHHHhhccCCCceEEEeCCceeeeEecCCC
Q 030864 30 STALVDRFLQTNSSAVSVQVGDNVTLAYTHQNE 62 (170)
Q Consensus 30 ~~~l~~~f~~~~p~a~~v~~g~~~~lAy~~~~q 62 (170)
+++.++.++..|.|++.++-+....+||=+.+-
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~ 34 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKV 34 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCC
Confidence 678999999999999999998667799976554
No 54
>PRK06764 hypothetical protein; Provisional
Probab=28.18 E-value=48 Score=25.26 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.5
Q ss_pred ceecccCcEEEEEceeecC
Q 030864 68 RSFAVKDEIFCLFEGALDN 86 (170)
Q Consensus 68 r~f~~~~~i~~vFNGEIyN 86 (170)
-.|+.-+.+++--||.|||
T Consensus 78 i~f~kpg~yvirvngciy~ 96 (105)
T PRK06764 78 IRFSKPGKYVIRVNGCIYN 96 (105)
T ss_pred EEecCCccEEEEEccEEee
Confidence 3577778999999999998
No 55
>PF10984 DUF2794: Protein of unknown function (DUF2794); InterPro: IPR021252 This is a bacterial family of proteins with unknown function.
Probab=26.08 E-value=1.4e+02 Score=22.30 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=29.7
Q ss_pred chHHHHHHHHH------HhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEEc
Q 030864 101 NEVILVIEAYK------ALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKVV 162 (170)
Q Consensus 101 sE~~vii~aY~------~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~~ 162 (170)
.|-..|+.+|- +|||. .+..++-+=.|.|| =+-+..|||.+...
T Consensus 6 ~EL~~iL~lYGrmVa~GeWRDY-------ai~~~~~~A~Fsvf-----------rr~~E~PlYrIeK~ 55 (85)
T PF10984_consen 6 RELDQILRLYGRMVAAGEWRDY-------AIDHLRDRAVFSVF-----------RRAAERPLYRIEKR 55 (85)
T ss_pred HHHHHHHHHhCcceeccchhhh-------hcccCCceEEEEEe-----------eccCCCccEEEEeC
Confidence 45566778885 45553 34566667777777 45678999987654
No 56
>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit. This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=25.82 E-value=52 Score=27.90 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=15.9
Q ss_pred eEEEEEEeCCCCeEEEEeeCCCCcce
Q 030864 131 YFAFIVYDKSTSTLFVASVLAASHLL 156 (170)
Q Consensus 131 mFAFviyD~~~~~lf~ARDr~G~kPL 156 (170)
-+||+|||-+++ +|.|.|-+
T Consensus 177 ~vaFAVWdG~~~------er~g~K~v 196 (205)
T TIGR03477 177 KVAFAVWNGGNA------ERSGLKSV 196 (205)
T ss_pred EEEEEEEcCCcc------cccCccee
Confidence 689999999876 57777754
No 57
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=25.72 E-value=28 Score=25.91 Aligned_cols=15 Identities=7% Similarity=-0.303 Sum_probs=12.1
Q ss_pred EeeCCCCcceeeEEE
Q 030864 147 ASVLAASHLLLSLKV 161 (170)
Q Consensus 147 ARDr~G~kPLY~~~~ 161 (170)
.++.+|+||||.+.-
T Consensus 29 ~~~e~gIk~lyrGvs 43 (86)
T PF12594_consen 29 MHKEFGIKSLYRGVS 43 (86)
T ss_pred HHHhcCCeEEEEecc
Confidence 467899999998754
No 58
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=23.89 E-value=1.2e+02 Score=21.62 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=7.0
Q ss_pred HHHHHHhhhcC
Q 030864 107 IEAYKALRDRA 117 (170)
Q Consensus 107 i~aY~~~rdrG 117 (170)
-++|+.+.+.|
T Consensus 72 ~~~~~~l~~~G 82 (123)
T cd08351 72 DRIFARIRERG 82 (123)
T ss_pred HHHHHHHHHcC
Confidence 45666666666
No 59
>PF04756 OST3_OST6: OST3 / OST6 family; InterPro: IPR021149 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex.; PDB: 3G7Y_A 3G9B_A 3GA4_A.
Probab=23.84 E-value=26 Score=27.67 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred EEeCCCCeEEEEeeCCCCcceeeEEEccccc
Q 030864 136 VYDKSTSTLFVASVLAASHLLLSLKVVSSQQ 166 (170)
Q Consensus 136 iyD~~~~~lf~ARDr~G~kPLY~~~~~~~~~ 166 (170)
.||.-++.=+.++|++|++|.++..-..+.|
T Consensus 73 mfn~Ir~~P~~~~~~~g~~~i~f~~g~~~~Q 103 (160)
T PF04756_consen 73 MFNIIRGPPFIGRDPDGSRPIYFFSGGSQGQ 103 (160)
T ss_dssp -------------------------------
T ss_pred HHHHHhCCCccccCCCCCCceEEecCCCCcc
Confidence 4888899999999999999999887754444
No 60
>PRK05761 DNA polymerase I; Reviewed
Probab=23.71 E-value=81 Score=31.53 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=28.0
Q ss_pred ceEEEEEEeCCCCeEEEEeeCCCCcceeeEEEc
Q 030864 130 GYFAFIVYDKSTSTLFVASVLAASHLLLSLKVV 162 (170)
Q Consensus 130 GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~~ 162 (170)
|.=..-||+..++++++..|+.|-||.||....
T Consensus 31 ~~~vi~l~~~~~~~~~~~~d~~gfkPYfy~~~~ 63 (787)
T PRK05761 31 GKAVVKLYDPETGKIYKWYDRTGHKPYFLTDLD 63 (787)
T ss_pred CeeEEEEEecCCCeEEEEEcCCCCCCeEEecCC
Confidence 344567999999999999999999999988643
No 61
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=23.48 E-value=2.1e+02 Score=19.62 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCC-CCcceee
Q 030864 102 EVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLA-ASHLLLS 158 (170)
Q Consensus 102 E~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~-G~kPLY~ 158 (170)
|.+-++..++.+|..|- +.. .-+ +.||...+++++..|.= =.+||+-
T Consensus 13 ~p~~l~~~lr~~RR~g~------i~~---~vs-i~~~~~~~ei~I~tD~GR~~RPL~v 60 (63)
T PF04566_consen 13 DPEELVKTLRNLRRSGK------ISK---EVS-IVYDIREKEIRINTDAGRLCRPLFV 60 (63)
T ss_dssp SHHHHHHHHHHHHHTTS------S-T---TSE-EEEETTTTEEEEE-SSCEEEEEEEE
T ss_pred CHHHHHHHHHHHhhccC------Ccc---eeE-EEEeccCCEEEEEccCCcccceeEE
Confidence 44557788899998772 111 122 46999999999998852 1245553
No 62
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=23.24 E-value=61 Score=23.43 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=15.8
Q ss_pred CcEEEEEceee---cCHHH-HHHHhCC
Q 030864 74 DEIFCLFEGAL---DNLGS-LRQQYGL 96 (170)
Q Consensus 74 ~~i~~vFNGEI---yN~~e-Lr~~~g~ 96 (170)
+++++.|+||| +|+.. |.+++|+
T Consensus 38 D~y~i~~~geIvL~eNl~~YLie~lg~ 64 (71)
T PF09466_consen 38 DDYFISPDGEIVLEENLKRYLIEQLGF 64 (71)
T ss_dssp S-EEE-ETTEEEECCCHHHHHHHTTTE
T ss_pred CeEEEeCCCcEEehhhHHHHHHHHcCe
Confidence 45555599998 68765 7777776
No 63
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=21.35 E-value=89 Score=28.07 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=23.8
Q ss_pred CCchHHHHHHHHHHhhh------c-CCCCcccccc-cCCceE
Q 030864 99 SANEVILVIEAYKALRD------R-APYPPNHVVG-HLSGYF 132 (170)
Q Consensus 99 s~sE~~vii~aY~~~rd------r-Gpyp~~~~l~-~L~GmF 132 (170)
++-|. +|+-+.+++++ . ||+|+|.+.. ..+|.|
T Consensus 196 G~EE~-iI~PAi~~~~~~~g~~~~~GP~paDt~F~~~~~~~~ 236 (307)
T PRK03946 196 GGEEE-EIKKAIKKANQFLGFEIFFGPLVPDSAFTPNKRKKF 236 (307)
T ss_pred CcchH-HHHHHHHHHHHhcCCCcccCCcCchhhcccccccCC
Confidence 46777 99999999883 3 9999997543 344544
No 64
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=21.11 E-value=64 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=19.7
Q ss_pred ccCcEEEEEceeecCHHHHHHHh
Q 030864 72 VKDEIFCLFEGALDNLGSLRQQY 94 (170)
Q Consensus 72 ~~~~i~~vFNGEIyN~~eLr~~~ 94 (170)
..++.+++.+|.+||....-+++
T Consensus 17 ~~~d~Wvii~gkVYDvT~Fl~eH 39 (124)
T KOG0537|consen 17 KKDDCWVIIHGKVYDVTSFLDEH 39 (124)
T ss_pred CCCCeEEEECCEEEeccchhhhC
Confidence 45889999999999998877664
No 65
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=20.66 E-value=90 Score=22.62 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCcc
Q 030864 88 GSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPN 122 (170)
Q Consensus 88 ~eLr~~~g~~ks~sE~~vii~aY~~~rdrGpyp~~ 122 (170)
.+|.+++|.++++ |-+..++||++| ++.+
T Consensus 23 e~La~~LgiSRta-----VwK~Iq~Lr~~G-~~I~ 51 (79)
T COG1654 23 EKLAEELGISRTA-----VWKHIQQLREEG-VDIE 51 (79)
T ss_pred HHHHHHHCccHHH-----HHHHHHHHHHhC-CceE
Confidence 4677788775432 446668888999 5444
Done!