Your job contains 1 sequence.
>030865
MSLTKAAAALQFNACDFFGTKAKPFNLLPSQTQRRSFILKPLVVEARANARTESAKIRNR
RIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEA
AERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFLQQR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030865
(170 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007690 - symbol:EMB3105 "EMBRYO DEFECTIVE 310... 200 4.7e-16 1
TIGR_CMR|BA_0126 - symbol:BA_0126 "ribosomal protein L18"... 164 3.1e-12 1
TIGR_CMR|GSU_2841 - symbol:GSU_2841 "ribosomal protein L1... 159 1.0e-11 1
TIGR_CMR|CHY_2293 - symbol:CHY_2293 "ribosomal protein L1... 154 3.5e-11 1
TIGR_CMR|DET_0490 - symbol:DET_0490 "ribosomal protein L1... 132 7.6e-09 1
UNIPROTKB|P66076 - symbol:rplR "50S ribosomal protein L18... 109 2.1e-06 1
TIGR_CMR|CJE_1859 - symbol:CJE_1859 "ribosomal protein L1... 103 9.0e-06 1
TIGR_CMR|CBU_0254 - symbol:CBU_0254 "ribosomal protein L1... 89 0.00040 1
>TAIR|locus:2007690 [details] [associations]
symbol:EMB3105 "EMBRYO DEFECTIVE 3105" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0007389 "pattern
specification process" evidence=RCA] [GO:0008361 "regulation of
cell size" evidence=RCA] [GO:0009664 "plant-type cell wall
organization" evidence=RCA] [GO:0009832 "plant-type cell wall
biogenesis" evidence=RCA] [GO:0009926 "auxin polar transport"
evidence=RCA] [GO:0010015 "root morphogenesis" evidence=RCA]
[GO:0010075 "regulation of meristem growth" evidence=RCA]
[GO:0040007 "growth" evidence=RCA] [GO:0048653 "anther development"
evidence=RCA] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412
GO:GO:0009941 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
EMBL:AC007932 EMBL:AF336922 IPI:IPI00547186 PIR:E96523
RefSeq:NP_175268.1 UniGene:At.15427 UniGene:At.67857
ProteinModelPortal:Q9SX68 SMR:Q9SX68 STRING:Q9SX68 PaxDb:Q9SX68
PRIDE:Q9SX68 ProMEX:Q9SX68 EnsemblPlants:AT1G48350.1 GeneID:841255
KEGG:ath:AT1G48350 GeneFarm:175 TAIR:At1g48350 eggNOG:COG0256
HOGENOM:HOG000248742 InParanoid:Q9SX68 KO:K02881 OMA:GNKYHGR
PhylomeDB:Q9SX68 ProtClustDB:CLSN2682213 Genevestigator:Q9SX68
GermOnline:AT1G48350 TIGRFAMs:TIGR00060 Uniprot:Q9SX68
Length = 170
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 56/166 (33%), Positives = 83/166 (50%)
Query: 1 MSLTKAAAALQFNACDFFGTKAKPFNLLPSQTQRRSFILKPLVVEARANARTESAKIRNR 60
+SL +A N KP++ S Q RS +VVEA+ +E R+
Sbjct: 10 VSLITNRSAFLGNGLQHRAVFLKPWS--SSSLQSRS-----MVVEAKTKTSSEDRIARHS 62
Query: 61 RIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCS-TIE 119
RI+KK NGT +PRL VF S+K LY ++DD L ST Q+ I + TIE
Sbjct: 63 RIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIE 122
Query: 120 AAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165
A+++GE + K+C+ IT+++ +DR G R++A HG
Sbjct: 123 VAKKVGEVIAKSCLEKGITKVA-FDRGGYPYHGRIEALAAAAREHG 167
>TIGR_CMR|BA_0126 [details] [associations]
symbol:BA_0126 "ribosomal protein L18" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256
HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060
ProtClustDB:PRK05593 HAMAP:MF_01337_B RefSeq:NP_842694.1
RefSeq:YP_016731.1 RefSeq:YP_026412.1 ProteinModelPortal:Q81VR4
SMR:Q81VR4 DNASU:1087013 EnsemblBacteria:EBBACT00000013313
EnsemblBacteria:EBBACT00000016218 EnsemblBacteria:EBBACT00000019264
GeneID:1087013 GeneID:2818212 GeneID:2851571 KEGG:ban:BA_0126
KEGG:bar:GBAA_0126 KEGG:bat:BAS0126
BioCyc:BANT260799:GJAJ-137-MONOMER
BioCyc:BANT261594:GJ7F-139-MONOMER Uniprot:Q81VR4
Length = 120
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 42 LVVEARANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGS 101
++ +A NA + K R+ R++ K GT +PRL+VF S++ +YA ++DD N L S
Sbjct: 1 MITKADKNA---TRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSAS 57
Query: 102 TLQQSIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQA 156
TL + + NG S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 58 TLDKDLALNGT---SNIEAATKVGESVAKRAVEKGVKEVV-FDRGGYLYHGRVKA 108
>TIGR_CMR|GSU_2841 [details] [associations]
symbol:GSU_2841 "ribosomal protein L18" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_953884.2 ProteinModelPortal:Q749A3 SMR:Q749A3
GeneID:2686815 KEGG:gsu:GSU2841 PATRIC:22028529
BioCyc:GSUL243231:GH27-2807-MONOMER Uniprot:Q749A3
Length = 122
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R R++KK GT +PRL+VF S + +YA ++DD L ST+Q+ + N C
Sbjct: 14 RKTRVRKKIRGTTERPRLNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLNH-CGN 72
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQA 156
+EAA+R+G + K + NI + +DRNG R++A
Sbjct: 73 VEAAKRVGALIAKRALEKNIATVV-FDRNGFLYHGRIKA 110
>TIGR_CMR|CHY_2293 [details] [associations]
symbol:CHY_2293 "ribosomal protein L18" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_361102.1 ProteinModelPortal:Q3A9T2
SMR:Q3A9T2 STRING:Q3A9T2 GeneID:3727753 KEGG:chy:CHY_2293
PATRIC:21277657 BioCyc:CHYD246194:GJCN-2292-MONOMER Uniprot:Q3A9T2
Length = 122
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 41/118 (34%), Positives = 64/118 (54%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R K R+ R++KK +GTP +PRL+V+ S K +YA ++DD + + L STL +RG
Sbjct: 7 RNLERKRRHLRVRKKIHGTPERPRLNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRGK 66
Query: 111 GNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFLQ 168
IEAA+ +G + + A I ++ +DR G R++A +R G LQ
Sbjct: 67 IGYG-GNIEAAKAVGRLIAERAKAKGIEKVV-FDRGGYLYHGRVKALA-EAAREGGLQ 121
>TIGR_CMR|DET_0490 [details] [associations]
symbol:DET_0490 "ribosomal protein L18" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_181234.1 ProteinModelPortal:Q3Z965
STRING:Q3Z965 GeneID:3230240 KEGG:det:DET0490 PATRIC:21608049
BioCyc:DETH243164:GJNF-490-MONOMER Uniprot:Q3Z965
Length = 121
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 38/123 (30%), Positives = 64/123 (52%)
Query: 46 ARANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQ 105
A+ NAR E+ +R+ R++KK +GT +PRL VF S + +Y +++D L ST
Sbjct: 2 AKVNAR-EARIVRHERLRKKVSGTEARPRLCVFRSIENIYTQVINDNCGSTLVQASTKDA 60
Query: 106 SIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165
++ + T E A IG + K + I+E+ +DR G + R++A +R G
Sbjct: 61 ELKAELDGKTKT-EQAVVIGNLIAKRSLEAGISEVV-FDRGGYKYHGRVKALA-EAARSG 117
Query: 166 FLQ 168
L+
Sbjct: 118 GLK 120
>UNIPROTKB|P66076 [details] [associations]
symbol:rplR "50S ribosomal protein L18" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006412 GO:GO:0005840 EMBL:BX842574 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B PIR:C70644 RefSeq:NP_215234.1 RefSeq:NP_335165.1
RefSeq:YP_006514064.1 ProteinModelPortal:P66076 SMR:P66076
PRIDE:P66076 EnsemblBacteria:EBMYCT00000002810
EnsemblBacteria:EBMYCT00000070227 GeneID:13318609 GeneID:888457
GeneID:926038 KEGG:mtc:MT0745 KEGG:mtu:Rv0720 KEGG:mtv:RVBD_0720
PATRIC:18123373 TubercuList:Rv0720 Uniprot:P66076
Length = 122
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 29/99 (29%), Positives = 51/99 (51%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R+ R++KK +GT +PRL V S + ++ LV+D N + S+++ +RG P
Sbjct: 16 RHTRLRKKLSGTAERPRLVVHRSARHIHVQLVNDLNGTTVAAASSIEADVRG---VPGDK 72
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQA 156
+ R+G+ + + A I + +DR G G R+ A
Sbjct: 73 KARSVRVGQLIAERAKAAGIDTVV-FDRGGYTYGGRIAA 110
>TIGR_CMR|CJE_1859 [details] [associations]
symbol:CJE_1859 "ribosomal protein L18" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:YP_179829.1 ProteinModelPortal:Q5HSA6 STRING:Q5HSA6
GeneID:3232486 KEGG:cjr:CJE1859 PATRIC:20045550 OMA:AQAIDDT
BioCyc:CJEJ195099:GJC0-1898-MONOMER Uniprot:Q5HSA6
Length = 118
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 35/104 (33%), Positives = 51/104 (49%)
Query: 47 RANA--RTESAKI-RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTL 103
RAN R + +I R +RI+ K +G PR+SVF S++ LY +DD L
Sbjct: 2 RANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYIQAIDDVKAVTLAAVDGR 61
Query: 104 QQSIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNG 147
+ ++ N E A++I E KT A I E + +DRNG
Sbjct: 62 KLGVKANK-------EGAKKIAAEFAKTLKAKKI-EQAVFDRNG 97
>TIGR_CMR|CBU_0254 [details] [associations]
symbol:CBU_0254 "ribosomal protein L18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_819298.1 ProteinModelPortal:Q83ER0 SMR:Q83ER0
GeneID:1208135 KEGG:cbu:CBU_0254 PATRIC:17929201
BioCyc:CBUR227377:GJ7S-260-MONOMER Uniprot:Q83ER0
Length = 117
Score = 89 (36.4 bits), Expect = 0.00040, P = 0.00040
Identities = 29/108 (26%), Positives = 51/108 (47%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R RR + K RL V S +YA L+ ++ K L STL++ +R
Sbjct: 10 RARRTRAKIKELGAV-RLCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHG-GN 67
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165
I+AA IG+ + + +T+++ +DR+G + R++A + G
Sbjct: 68 IQAATAIGKLIAQRAKKAGVTKVA-FDRSGYKYHGRVRALAEAVREGG 114
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.133 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 170 170 0.00086 108 3 11 22 0.36 32
31 0.47 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 558 (59 KB)
Total size of DFA: 131 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.48u 0.11s 14.59t Elapsed: 00:00:01
Total cpu time: 14.48u 0.11s 14.59t Elapsed: 00:00:01
Start: Fri May 10 01:10:13 2013 End: Fri May 10 01:10:14 2013