BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030865
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX68|RK18_ARATH 50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana
GN=RPL18 PE=1 SV=1
Length = 170
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 12/151 (7%)
Query: 27 LLPSQTQRRSFILKP----------LVVEARANARTESAKIRNRRIQKKFNGTPTKPRLS 76
L + Q R+ LKP +VVEA+ +E R+ RI+KK NGT +PRL
Sbjct: 19 FLGNGLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLC 78
Query: 77 VFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCS-TIEAAERIGEELIKTCIAL 135
VF S+K LY ++DD L ST Q+ I + TIE A+++GE + K+C+
Sbjct: 79 VFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEK 138
Query: 136 NITEISSYDRNGSRRGERMQAFEIPISRHGF 166
IT++ ++DR G R++A HG
Sbjct: 139 GITKV-AFDRGGYPYHGRIEALAAAAREHGL 168
>sp|Q8SAY0|RK18_ORYSJ 50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp.
japonica GN=RPL18 PE=2 SV=1
Length = 170
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 14/135 (10%)
Query: 29 PSQTQRRSFILKPLVVEARANARTESAK--IRNRRIQKKFNGTPTKPRLSVFCSDKQLYA 86
PSQ +RR+ LVV A+ T A R+ R++KK +GT +PRLSVF S+K LYA
Sbjct: 33 PSQARRRA----SLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYA 88
Query: 87 MLVDDQNKKCLFFGSTLQQSIRGN----GNPPCSTIEAAERIGEELIKTCIALNITEISS 142
++DD L ST+ +S+ + P T+E A++IGE + K+C+ IT++
Sbjct: 89 QVIDDTKSCTLVSASTMHKSLSKDLEYSAGP---TVEVAQKIGEVIAKSCLEKGITKV-V 144
Query: 143 YDRNGSRRGERMQAF 157
+DR G R++A
Sbjct: 145 FDRGGFLYHGRIKAL 159
>sp|P04453|RL18_MYCCT 50S ribosomal protein L18 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=rplR PE=3 SV=2
Length = 116
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
+TE+ K R+ R++ K GT +PRL+VF S+ YA ++DD L STL+ ++
Sbjct: 5 KTEARKRRHFRVRHKVVGTAERPRLNVFKSNTNFYAQIIDDTKGVTLVSASTLKMDLKSK 64
Query: 111 GNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
N I+AAE++ EEL K +A NI ++ +DRNG +++AF
Sbjct: 65 SN-----IQAAEKVAEELTKKALAANINQV-VFDRNGYLYHGKIKAF 105
>sp|B7KI02|RL18_CYAP7 50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7424)
GN=rplR PE=3 SV=1
Length = 120
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
RTES + R+ RI++K GTP++PRL+VF S+ +YA ++DD + L STL + ++G
Sbjct: 5 RTESVQRRHSRIRRKVEGTPSRPRLAVFRSNNHIYAQVIDDVAQHTLVAASTLDKDLKGE 64
Query: 111 GNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
+ +T EA+E +G+ + + +A I ++ +DR G+ R++A
Sbjct: 65 FSSG-ATCEASEAVGKLVAQRALAKGIEKV-VFDRGGNLYHGRIRAL 109
>sp|A9FGF8|RL18_SORC5 50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56)
GN=rplR PE=3 SV=1
Length = 119
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R RI+KK GTP +PRLSVF S K +YA ++DD + K L STL + ++G+ + +
Sbjct: 11 RKLRIRKKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGSLDED-NK 69
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNG 147
+EAA+++G + + C I ++ +DRNG
Sbjct: 70 VEAAKKVGALIARICKERQIDKV-VFDRNG 98
>sp|Q6XYX2|RL18_SPIKU 50S ribosomal protein L18 OS=Spiroplasma kunkelii GN=rplR PE=3 SV=1
Length = 121
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 50 ARTESAKIRNR--RIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSI 107
+++ SAK + R R++ K NGT + PRL+VF S+ YA L+DD +K + STL+ +
Sbjct: 6 SKSSSAKRKRRHFRVRAKINGTTSVPRLNVFKSNGHFYAQLIDDVKQKTIVAASTLKMT- 64
Query: 108 RGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
G S I AAE++G+E+ K + +T + +DR G +++AF
Sbjct: 65 ---GLKSTSNIAAAEKVGDEIAKKALDKKVTTV-VFDRGGYLYHGKVKAF 110
>sp|B7JKD5|RL18_BACC0 50S ribosomal protein L18 OS=Bacillus cereus (strain AH820) GN=rplR
PE=3 SV=1
Length = 120
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEXGVKEV-VFDRGGYLYHGRVKAL 109
>sp|Q6MSP1|RL18_MYCMS 50S ribosomal protein L18 OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=rplR PE=3 SV=1
Length = 116
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
+ E+ K R+ R+++K GT +PRL+VF S+ YA ++DD L STL+ ++
Sbjct: 5 KAEARKRRHFRVRQKVVGTAERPRLNVFKSNTNFYAQIIDDTKGVTLVSASTLKMDLKSK 64
Query: 111 GNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
N AA+++ EE+ K +A NIT++ +DRNG +++AF
Sbjct: 65 SNTL-----AAQKVAEEIAKKALAANITQV-VFDRNGYLYHGKIKAF 105
>sp|Q6HPP2|RL18_BACHK 50S ribosomal protein L18 OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=rplR PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|Q63H74|RL18_BACCZ 50S ribosomal protein L18 OS=Bacillus cereus (strain ZK / E33L)
GN=rplR PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|Q81J26|RL18_BACCR 50S ribosomal protein L18 OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=rplR PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|B9IZL0|RL18_BACCQ 50S ribosomal protein L18 OS=Bacillus cereus (strain Q1) GN=rplR
PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|B7HQW0|RL18_BACC7 50S ribosomal protein L18 OS=Bacillus cereus (strain AH187) GN=rplR
PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|B7HJ64|RL18_BACC4 50S ribosomal protein L18 OS=Bacillus cereus (strain B4264) GN=rplR
PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|C1ET55|RL18_BACC3 50S ribosomal protein L18 OS=Bacillus cereus (strain 03BB102)
GN=rplR PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|Q73F80|RL18_BACC1 50S ribosomal protein L18 OS=Bacillus cereus (strain ATCC 10987)
GN=rplR PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|Q81VR4|RL18_BACAN 50S ribosomal protein L18 OS=Bacillus anthracis GN=rplR PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|C3LJ98|RL18_BACAC 50S ribosomal protein L18 OS=Bacillus anthracis (strain CDC 684 /
NRRL 3495) GN=rplR PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|C3P9S1|RL18_BACAA 50S ribosomal protein L18 OS=Bacillus anthracis (strain A0248)
GN=rplR PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNIEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|Q0SQG0|RL18_CLOPS 50S ribosomal protein L18 OS=Clostridium perfringens (strain SM101
/ Type A) GN=rplR PE=3 SV=1
Length = 119
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R E+ + R+ R++KK GTP +PRLSV+ S+K +YA ++DD N L S+L ++I
Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK 66
Query: 111 GNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
G S EAA+ +GE + K I I ++ +DR G R++A
Sbjct: 67 G----SNKEAAKLVGELVAKRAIEKGINDV-VFDRGGYVYHGRVEAL 108
>sp|Q8XHT9|RL18_CLOPE 50S ribosomal protein L18 OS=Clostridium perfringens (strain 13 /
Type A) GN=rplR PE=3 SV=1
Length = 119
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R E+ + R+ R++KK GTP +PRLSV+ S+K +YA ++DD N L S+L ++I
Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK 66
Query: 111 GNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
G S EAA+ +GE + K I I ++ +DR G R++A
Sbjct: 67 G----SNKEAAKLVGELVAKRAIEKGINDV-VFDRGGYVYHGRVEAL 108
>sp|Q0TMR2|RL18_CLOP1 50S ribosomal protein L18 OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=rplR PE=3 SV=1
Length = 119
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R E+ + R+ R++KK GTP +PRLSV+ S+K +YA ++DD N L S+L ++I
Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK 66
Query: 111 GNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
G S EAA+ +GE + K I I ++ +DR G R++A
Sbjct: 67 G----SNKEAAKLVGELVAKRAIEKGINDV-VFDRGGYVYHGRVEAL 108
>sp|B9KZX2|RL18_THERP 50S ribosomal protein L18 OS=Thermomicrobium roseum (strain ATCC
27502 / DSM 5159 / P-2) GN=rplR PE=3 SV=1
Length = 124
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GTP +PRL+VF S+K +YA ++DD L STL++ +R P
Sbjct: 13 KRRHLRVRAKVFGTPERPRLNVFRSNKHIYAQIIDDTRGHTLVAASTLEKEVRERFPDPH 72
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
IE A +G+ + + +A IT + +DR G + R++A
Sbjct: 73 PKIEEARIVGQVVGERALAKGITRV-VFDRGGYKYHGRVKAL 113
>sp|A9VP93|RL18_BACWK 50S ribosomal protein L18 OS=Bacillus weihenstephanensis (strain
KBAB4) GN=rplR PE=3 SV=1
Length = 120
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
A+ + K R+ R++ K GT +PRL+V+ S++ +YA ++DD N L STL + +
Sbjct: 6 AKNATRKKRHARVRAKLTGTAERPRLNVYRSNQHIYAQVIDDVNGVTLVSASTLDKDLAL 65
Query: 110 NGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
NG S EAA ++GE + K + + E+ +DR G R++A
Sbjct: 66 NG---TSNTEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|B7IT35|RL18_BACC2 50S ribosomal protein L18 OS=Bacillus cereus (strain G9842) GN=rplR
PE=3 SV=1
Length = 120
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD N L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S EAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 SNTEAATKVGESVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|Q6F1X8|RL18_MESFL 50S ribosomal protein L18 OS=Mesoplasma florum (strain ATCC 33453 /
NBRC 100688 / NCTC 11704 / L1) GN=rplR PE=3 SV=1
Length = 115
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 7/107 (6%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
+ E+ K R+ R++ K +GT KPRL+VF S+ YA ++DD L S+L ++ +
Sbjct: 5 KQEARKRRHYRVRSKVSGTAAKPRLNVFKSNTNFYAQIIDDTTGTTLVSASSLNLGLK-S 63
Query: 111 GNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
GN IEAA+++ EE+ K IA +I ++ +DR G +++AF
Sbjct: 64 GN-----IEAAKKVAEEIAKLAIAKSIVDV-VFDRGGYLYHGKVKAF 104
>sp|Q749A3|RL18_GEOSL 50S ribosomal protein L18 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rplR PE=3 SV=1
Length = 122
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R R++KK GT +PRL+VF S + +YA ++DD L ST+Q+ + N C
Sbjct: 14 RKTRVRKKIRGTTERPRLNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLN-HCGN 72
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
+EAA+R+G + K + NI + +DRNG R++A
Sbjct: 73 VEAAKRVGALIAKRALEKNIATV-VFDRNGFLYHGRIKAL 111
>sp|C6E4P1|RL18_GEOSM 50S ribosomal protein L18 OS=Geobacter sp. (strain M21) GN=rplR
PE=3 SV=1
Length = 122
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R R++KK G+P +PRL+VF S + +YA L+DD L STL + G
Sbjct: 14 RQTRVRKKITGSPARPRLNVFKSARHIYAQLIDDTTGATLASASTLLGDV-AEGLSYTGN 72
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
IEAA ++G + K + IT + +DRNG R++A
Sbjct: 73 IEAATKVGAAIAKKALEKEITAV-VFDRNGFLYHGRIKAL 111
>sp|A7HM36|RL18_FERNB 50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1
Length = 122
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 57 IRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCS 116
+R++R++KK GTP +PRL+VF S+K +YA ++DD L ST++++++ +
Sbjct: 13 VRHKRLRKKIFGTPERPRLAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTWN 72
Query: 117 TIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
I AA+ +G+ + + +A I E+ +DR G + R++A
Sbjct: 73 -ITAAKEVGKLIAERALAKGIKEV-VFDRGGFKYHGRVKAL 111
>sp|B7K233|RL18_CYAP8 50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 8801)
GN=rplR PE=3 SV=1
Length = 120
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
+R ES + R+RRI+KK NGTP PRL+VF S+ +YA ++DD + + ST++ ++
Sbjct: 4 SRKESVQRRHRRIRKKVNGTPNCPRLAVFRSNLHIYAQIIDDVGQHTIAAASTVEPDLKK 63
Query: 110 NGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
+ + ST EA+ +G+ + + +A I ++ +DR G+ R++A
Sbjct: 64 SLSSG-STCEASAAVGKLVAERALAQGIEQV-VFDRGGNLYHGRVKAL 109
>sp|Q1D759|RL18_MYXXD 50S ribosomal protein L18 OS=Myxococcus xanthus (strain DK 1622)
GN=rplR PE=3 SV=2
Length = 118
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 15/109 (13%)
Query: 41 PLVVEARANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFG 100
P +EAR R RI+KK +GT +PRL+V+ S K +YA +VDD K L F
Sbjct: 2 PTKIEARLK--------RKNRIRKKLSGTTERPRLTVYKSLKHIYAQVVDDTTGKTLAFA 53
Query: 101 STLQQSIRG--NGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNG 147
S+L + ++G G+ A+R+G + + C A N+ E +DRNG
Sbjct: 54 SSLSKDLKGQDEGDKKAD----AKRVGALIAQKCKAANV-EAVVFDRNG 97
>sp|B2UYC6|RL18_CLOBA 50S ribosomal protein L18 OS=Clostridium botulinum (strain Alaska
E43 / Type E3) GN=rplR PE=3 SV=1
Length = 119
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R+ R++KK GTP +PRLSVF S+K +YA ++DD N + S+L + NG
Sbjct: 14 RHLRVRKKVFGTPDRPRLSVFRSEKNIYAQIIDDVNAVTIVAASSLDKEFSTNGGNK--- 70
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQ 155
E A+ +G + K I ITE+ +DR G R+Q
Sbjct: 71 -EGAKLVGAAVAKKAIEKGITEV-VFDRGGYVYHGRVQ 106
>sp|Q7NEG8|RL18_GLOVI 50S ribosomal protein L18 OS=Gloeobacter violaceus (strain PCC
7421) GN=rplR PE=3 SV=1
Length = 120
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R++RI++K GTP +PRL+V+ S++ +YA ++DD +++ L STL+ +R +G +T
Sbjct: 12 RHQRIRRKIAGTPEQPRLAVYRSNRHIYAQVIDDVHQRTLVAASTLEAPLR-SGEEGTAT 70
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
EAA +G + + IT + +DR G R++A
Sbjct: 71 CEAATAVGRLVAERAKEKGITAV-VFDRGGKLYHGRVKAV 109
>sp|Q5L3S3|RL18_GEOKA 50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain
HTA426) GN=rplR PE=3 SV=1
Length = 120
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ RI+KK GT +PRLSVF S+K +YA ++DD + STL + G
Sbjct: 12 KKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF---GLDST 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
+ IEAA+++GE + K + I ++ +DR G R++A
Sbjct: 69 NNIEAAKKVGELVAKRALEKGIKKV-VFDRGGYLYHGRVKAL 109
>sp|P09415|RL18_GEOSE 50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR
PE=1 SV=1
Length = 120
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ RI+KK GT +PRLSVF S+K +YA ++DD + STL + G
Sbjct: 12 KKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF---GLDST 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
+ IEAA+++GE + K + I ++ +DR G R++A
Sbjct: 69 NNIEAAKKVGELVAKRALEKGIKQV-VFDRGGYLYHGRVKAL 109
>sp|B5YDV9|RL18_DICT6 50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1
Length = 122
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
+R E KIR+ RI+KK GT +PRL+V+ S + +YA ++DD L S+L++ IR
Sbjct: 6 SRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIRS 65
Query: 110 NGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNG 147
IEAA+ +GE + K + I ++ +DR G
Sbjct: 66 Q-LKSTKNIEAAKLVGEVIAKRALEKGIKKV-VFDRGG 101
>sp|Q7V9X7|RL18_PROMA 50S ribosomal protein L18 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rplR PE=3 SV=1
Length = 122
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
+R + + R++R+++ +GT +PRL+VF S+ +YA ++DD + L STL++
Sbjct: 5 SRKQKTQKRHKRLRRNLSGTDQRPRLAVFRSNNHIYAQVIDDVAQNTLCAASTLEKEFLS 64
Query: 110 NGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
N ST A+ +GE L K + I ++ +DR GS R++A
Sbjct: 65 NSKVNASTCAASTAVGEMLAKRALGKGIKQV-VFDRGGSLYHGRVKAL 111
>sp|Q3AMP5|RL18_SYNSC 50S ribosomal protein L18 OS=Synechococcus sp. (strain CC9605)
GN=rplR PE=3 SV=1
Length = 122
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
+R + + R+RR+++ GT +PRL+VF S+ +YA ++DD + L ST+ + +R
Sbjct: 5 SRKQQTQKRHRRLRRHITGTSDRPRLAVFRSNNHIYAQVIDDAAQSTLCSASTVDKELRT 64
Query: 110 NGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
P + +A+ +GE + K +A I ++ +DR G+ R++A
Sbjct: 65 GLKAPAGSCDASVAVGELVAKRAMAKGIQQV-VFDRGGNLYHGRIKAL 111
>sp|B1HMW4|RL18_LYSSC 50S ribosomal protein L18 OS=Lysinibacillus sphaericus (strain
C3-41) GN=rplR PE=3 SV=1
Length = 119
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K +GT +PRL+VF S+K +YA L+DD + S+ + G G
Sbjct: 12 KKRHARVRSKISGTAERPRLNVFRSNKNIYAQLIDDVAGVTIVSASSQENGFEGAG---- 67
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
S +EAA +IGE + K NIT + +DR G R++A
Sbjct: 68 SNVEAASKIGETIAKRAAEKNITAV-VFDRGGYLYHGRVKAL 108
>sp|A7GK36|RL18_BACCN 50S ribosomal protein L18 OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=rplR PE=3 SV=1
Length = 120
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GT +PRL+VF S++ +YA ++DD L STL + + NG
Sbjct: 12 KKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVKGVTLVSASTLDKDLALNG---T 68
Query: 116 STIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
IEAA ++GE + K + + E+ +DR G R++A
Sbjct: 69 GNIEAATKVGELVAKRAVEKGVKEV-VFDRGGYLYHGRVKAL 109
>sp|Q3A9T2|RL18_CARHZ 50S ribosomal protein L18 OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=rplR PE=3 SV=1
Length = 122
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 11/117 (9%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG----NG 111
K R+ R++KK +GTP +PRL+V+ S K +YA ++DD + + L STL +RG G
Sbjct: 12 KRRHLRVRKKIHGTPERPRLNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRGKIGYGG 71
Query: 112 NPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFLQ 168
N IEAA+ +G + + A I ++ +DR G R++A +R G LQ
Sbjct: 72 N-----IEAAKAVGRLIAERAKAKGIEKV-VFDRGGYLYHGRVKALA-EAAREGGLQ 121
>sp|Q046B0|RL18_LACGA 50S ribosomal protein L18 OS=Lactobacillus gasseri (strain ATCC
33323 / DSM 20243) GN=rplR PE=3 SV=1
Length = 119
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R++RI+ K +GT +PRLSVF S+K +YA L+DD L ST ++I G S
Sbjct: 14 RHKRIRGKISGTAERPRLSVFRSNKNIYAQLIDDVEGVTLASASTNDKNISAEG----SK 69
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGF 166
+E A +G+ L +T NI + +DR+G R+QA +G
Sbjct: 70 MEQAAEVGKALAETAAKKNIKSV-VFDRSGYLYHGRVQALADAARENGL 117
>sp|Q74L74|RL18_LACJO 50S ribosomal protein L18 OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=rplR PE=3 SV=1
Length = 119
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R++RI+ K +GT +PRLSVF S+K +YA L+DD L ST ++I G S
Sbjct: 14 RHKRIRGKISGTAERPRLSVFRSNKNIYAQLIDDVEGVTLASASTNDKNISAEG----SK 69
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGF 166
+E A +G+ L +T NI + +DR+G R+QA +G
Sbjct: 70 MEQAAEVGKALAETAAKKNIKSV-VFDRSGYLYHGRIQALADAARENGL 117
>sp|B8G6Q9|RL18_CHLAD 50S ribosomal protein L18 OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=rplR PE=3 SV=1
Length = 120
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R+ RI+K+ +GTP +PRL+VF S +YA ++DD L ST+++ +G+P +
Sbjct: 13 RHNRIRKRVSGTPERPRLNVFRSHAHIYAQVIDDTVGHTLVAASTIEKGW--SGSPELTK 70
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
+ A +G+ + + + IT++ +DR G + R++A
Sbjct: 71 TQEAALVGKLIAERALQAGITKV-VFDRGGYKYHGRVKAL 109
>sp|Q04BZ9|RL18_LACDB 50S ribosomal protein L18 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=rplR PE=3 SV=1
Length = 119
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R+RR++ K +GT +PRLSVF S+ +YA L+DD L STL +S+ + +
Sbjct: 14 RHRRVRGKISGTAERPRLSVFRSNTNIYAQLIDDVAGVTLASASTLDKSV----SKDATK 69
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
+E A+ +G+ + + A ITE+ +DR G R++A
Sbjct: 70 VEQAQAVGKAIAEAGKAKGITEV-VFDRGGYIYHGRVKAL 108
>sp|Q1GBK2|RL18_LACDA 50S ribosomal protein L18 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplR PE=3
SV=1
Length = 119
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R+RR++ K +GT +PRLSVF S+ +YA L+DD L STL +S+ + +
Sbjct: 14 RHRRVRGKISGTAERPRLSVFRSNTNIYAQLIDDVAGVTLASASTLDKSV----SKDATK 69
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
+E A+ +G+ + + A ITE+ +DR G R++A
Sbjct: 70 VEQAQAVGKAIAEAGKAKGITEV-VFDRGGYIYHGRVKAL 108
>sp|Q18CH4|RL18_CLOD6 50S ribosomal protein L18 OS=Clostridium difficile (strain 630)
GN=rplR PE=3 SV=1
Length = 122
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R++R+++K +GT +PRL VF S +YA ++DD + L S+L+ ++ N +
Sbjct: 14 RHKRVRRKISGTSQRPRLCVFRSANNIYAQIIDDTKRVTLVAASSLEAEVKSAVNHTGNK 73
Query: 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQ 155
EAA+++GE + K + ITE+ +DR G R+Q
Sbjct: 74 -EAAKKVGELVAKKAVEKGITEV-VFDRGGYLYHGRIQ 109
>sp|Q65P91|RL18_BACLD 50S ribosomal protein L18 OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=rplR PE=3 SV=1
Length = 120
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG-NGNPPCS 116
R+ R++ K +GTP +PRL+VF S+K +YA ++DD N L STL + NG S
Sbjct: 14 RHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLDKDFNAENG----S 69
Query: 117 TIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAF 157
AA ++GE + K IT + +DR G R++A
Sbjct: 70 DTAAAAKVGELVAKRASEKGITNV-VFDRGGYLYHGRVKAL 109
>sp|B1IGD8|RL18_CLOBK 50S ribosomal protein L18 OS=Clostridium botulinum (strain Okra /
Type B1) GN=rplR PE=3 SV=1
Length = 119
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 47 RANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQS 106
+ N R++S + R+ R++KK GT +PRLSV+ S+K +YA L+DD K L S+ +Q
Sbjct: 3 KKNDRSQSRERRHMRVRKKIFGTAERPRLSVYRSEKHIYAQLIDDVEGKTLVAASSAEQG 62
Query: 107 IRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNG 147
G G S E A+ +G+ + + + + ++ +DR G
Sbjct: 63 FDGVG----SNKEGAKLVGKMVAEKALEKGLKKV-VFDRGG 98
>sp|B0K5Q9|RL18_THEPX 50S ribosomal protein L18 OS=Thermoanaerobacter sp. (strain X514)
GN=rplR PE=3 SV=1
Length = 121
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R E K R+ R++KK GTP +PRL+VF S K +YA ++DD L STL +RG
Sbjct: 7 RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELRGI 66
Query: 111 GNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNG 147
+ ++A+ +GE + K + I ++ +DR G
Sbjct: 67 AK--GANKQSAKLVGELIAKRALEKGIKDV-VFDRGG 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,593,805
Number of Sequences: 539616
Number of extensions: 2061199
Number of successful extensions: 4778
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 4261
Number of HSP's gapped (non-prelim): 608
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)