Query 030865
Match_columns 170
No_of_seqs 139 out of 1126
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_Q Ribosomal protein L18; 100.0 9.1E-51 3.1E-55 326.1 2.4 149 15-167 10-160 (161)
2 3r8s_O 50S ribosomal protein L 100.0 1.8E-46 6.2E-51 287.1 14.0 114 51-167 2-115 (116)
3 3v2d_S 50S ribosomal protein L 100.0 8.9E-46 3E-50 282.1 11.0 109 51-167 3-111 (112)
4 1ovy_A 50S ribosomal protein L 100.0 1.2E-45 4E-50 284.3 8.3 114 50-167 6-119 (120)
5 2zjr_L 50S ribosomal protein L 100.0 6.1E-44 2.1E-48 272.7 4.0 108 52-167 3-113 (114)
6 1vq8_N 50S ribosomal protein L 100.0 1.3E-35 4.5E-40 243.0 12.3 112 51-167 14-129 (187)
7 3j21_O 50S ribosomal protein L 100.0 1.7E-35 5.9E-40 244.9 8.0 113 50-167 13-130 (203)
8 2zkr_n 60S ribosomal protein L 100.0 2.1E-28 7.3E-33 211.4 14.8 107 59-167 31-172 (297)
9 4a17_M RPL5, 60S ribosomal pro 99.9 3.6E-26 1.2E-30 197.8 12.8 107 59-167 31-172 (301)
10 3u5e_D 60S ribosomal protein L 99.9 7.4E-26 2.5E-30 195.7 13.4 96 70-167 46-172 (297)
11 3iz5_Q 60S ribosomal protein L 99.9 1.3E-22 4.6E-27 175.7 10.0 104 59-167 35-172 (304)
12 2vqe_K 30S ribosomal protein S 97.2 0.0029 9.9E-08 48.7 9.5 90 71-167 15-104 (129)
13 3bbn_K Ribosomal protein S11; 97.0 0.0029 1E-07 49.4 8.2 89 71-166 28-116 (140)
14 3j20_M 30S ribosomal protein S 97.0 0.0051 1.8E-07 47.8 9.4 93 71-167 13-111 (137)
15 2xzm_K RPS14E; ribosome, trans 96.4 0.015 5.3E-07 45.8 8.6 92 72-167 28-125 (151)
16 3r8n_K 30S ribosomal protein S 96.3 0.024 8.4E-07 42.7 8.7 87 73-166 7-93 (117)
17 3u5c_O RP59A, 40S ribosomal pr 94.4 0.079 2.7E-06 41.1 5.9 94 70-167 12-111 (137)
18 3m0z_A Putative aldolase; MCSG 71.1 7.4 0.00025 32.8 5.7 75 84-167 115-189 (249)
19 3m6y_A 4-hydroxy-2-oxoglutarat 65.1 8.6 0.00029 32.9 5.0 75 84-167 137-212 (275)
20 1wek_A Hypothetical protein TT 57.8 17 0.0006 29.2 5.5 39 118-166 55-93 (217)
21 2hc5_A ORF 99, hypothetical pr 54.1 54 0.0019 24.2 7.2 44 54-97 39-82 (117)
22 1dbq_A Purine repressor; trans 51.2 30 0.001 26.5 5.6 48 116-167 109-158 (289)
23 3gv0_A Transcriptional regulat 50.5 29 0.001 26.8 5.6 43 124-167 114-159 (288)
24 3d8u_A PURR transcriptional re 49.3 26 0.00089 26.6 5.0 48 116-167 103-152 (275)
25 1byk_A Protein (trehalose oper 48.1 42 0.0014 25.3 6.0 48 116-167 98-148 (255)
26 3clk_A Transcription regulator 47.9 39 0.0013 26.1 5.9 48 116-167 108-157 (290)
27 3egc_A Putative ribose operon 47.7 29 0.00098 26.8 5.1 43 124-167 112-157 (291)
28 3cs3_A Sugar-binding transcrip 47.5 31 0.0011 26.4 5.2 43 125-167 106-150 (277)
29 3gyb_A Transcriptional regulat 46.9 30 0.001 26.4 5.1 44 124-168 105-149 (280)
30 2h0a_A TTHA0807, transcription 46.9 43 0.0015 25.4 5.9 48 116-167 97-151 (276)
31 3hcw_A Maltose operon transcri 46.6 32 0.0011 26.8 5.2 47 117-167 115-163 (295)
32 3kke_A LACI family transcripti 46.2 31 0.0011 27.0 5.1 43 125-168 119-164 (303)
33 3rot_A ABC sugar transporter, 45.0 34 0.0012 26.6 5.2 47 116-167 111-162 (297)
34 3bbo_W Ribosomal protein L24; 44.4 4.7 0.00016 32.8 0.0 27 1-27 4-30 (191)
35 2qu7_A Putative transcriptiona 44.0 32 0.0011 26.4 4.8 44 124-167 109-154 (288)
36 3c9i_A Tail needle protein GP2 43.8 10 0.00036 31.6 2.0 16 152-167 226-241 (242)
37 3tb6_A Arabinose metabolism tr 43.7 38 0.0013 25.8 5.2 45 124-168 124-169 (298)
38 2fvy_A D-galactose-binding per 43.6 52 0.0018 25.3 6.0 52 116-167 111-172 (309)
39 3dbi_A Sugar-binding transcrip 42.4 38 0.0013 27.0 5.1 44 123-167 167-213 (338)
40 3o74_A Fructose transport syst 42.2 32 0.0011 26.0 4.4 44 124-167 107-152 (272)
41 3fwz_A Inner membrane protein 41.3 55 0.0019 23.1 5.4 24 123-147 17-40 (140)
42 3b09_A Peptidyl-prolyl CIS-tra 41.2 30 0.001 24.2 3.9 22 119-140 31-52 (88)
43 3e61_A Putative transcriptiona 41.1 32 0.0011 26.2 4.4 45 123-168 108-155 (277)
44 3qk7_A Transcriptional regulat 40.5 43 0.0015 26.0 5.1 45 124-168 113-159 (294)
45 2jui_A PLNE; ampiphilic alpha 40.4 20 0.00069 21.0 2.3 20 143-162 1-20 (33)
46 3k4h_A Putative transcriptiona 40.1 56 0.0019 25.0 5.6 44 124-167 118-163 (292)
47 1y81_A Conserved hypothetical 39.7 36 0.0012 24.9 4.3 33 129-167 86-118 (138)
48 3brq_A HTH-type transcriptiona 39.2 59 0.002 24.7 5.6 48 116-167 122-171 (296)
49 3bbl_A Regulatory protein of L 38.5 43 0.0015 25.8 4.8 48 116-167 108-157 (287)
50 1weh_A Conserved hypothetical 38.3 55 0.0019 25.1 5.3 39 118-166 19-57 (171)
51 3k9c_A Transcriptional regulat 37.7 65 0.0022 24.9 5.7 47 116-167 109-157 (289)
52 3snr_A Extracellular ligand-bi 37.2 50 0.0017 25.8 5.0 44 123-167 121-165 (362)
53 3g85_A Transcriptional regulat 37.0 58 0.002 24.9 5.3 43 125-167 115-159 (289)
54 3miz_A Putative transcriptiona 36.9 51 0.0017 25.6 5.0 43 124-167 118-163 (301)
55 2x41_A Beta-glucosidase; hydro 36.7 65 0.0022 30.2 6.4 53 115-168 90-160 (721)
56 2rgy_A Transcriptional regulat 36.6 50 0.0017 25.5 4.9 47 116-167 111-160 (290)
57 1rcu_A Conserved hypothetical 35.6 64 0.0022 25.6 5.4 40 117-166 43-82 (195)
58 2d59_A Hypothetical protein PH 35.5 45 0.0015 24.4 4.2 36 126-167 91-126 (144)
59 3ctp_A Periplasmic binding pro 35.3 57 0.0019 25.9 5.1 48 116-167 155-204 (330)
60 2duw_A Putative COA-binding pr 35.3 38 0.0013 24.9 3.8 32 130-167 88-119 (145)
61 3huu_A Transcription regulator 34.2 67 0.0023 25.0 5.3 45 124-168 131-177 (305)
62 3ff4_A Uncharacterized protein 33.7 50 0.0017 24.0 4.2 35 127-167 73-107 (122)
63 2iks_A DNA-binding transcripti 33.7 51 0.0017 25.4 4.5 42 124-166 125-169 (293)
64 2fep_A Catabolite control prot 33.4 63 0.0022 25.0 5.0 47 116-167 116-166 (289)
65 3gbv_A Putative LACI-family tr 33.3 58 0.002 24.9 4.7 48 116-167 116-171 (304)
66 1qpz_A PURA, protein (purine n 32.4 78 0.0027 25.2 5.5 47 116-167 160-209 (340)
67 3e3m_A Transcriptional regulat 32.1 69 0.0023 25.7 5.2 45 123-168 173-221 (355)
68 3ic5_A Putative saccharopine d 31.8 41 0.0014 22.1 3.2 25 123-147 15-39 (118)
69 3c3k_A Alanine racemase; struc 31.5 79 0.0027 24.3 5.3 48 116-167 107-156 (285)
70 3bil_A Probable LACI-family tr 30.8 71 0.0024 25.7 5.1 45 117-166 168-215 (348)
71 2o20_A Catabolite control prot 30.3 1E+02 0.0034 24.4 5.8 42 125-167 168-212 (332)
72 4fn4_A Short chain dehydrogena 30.1 76 0.0026 25.6 5.1 41 121-166 16-56 (254)
73 4evq_A Putative ABC transporte 30.0 75 0.0026 25.1 5.0 44 123-167 137-181 (375)
74 4fe7_A Xylose operon regulator 29.9 89 0.0031 25.9 5.7 46 122-167 124-173 (412)
75 1iuk_A Hypothetical protein TT 29.3 54 0.0018 23.9 3.8 34 128-167 86-119 (140)
76 3abz_A Beta-glucosidase I; gly 28.5 1.1E+02 0.0037 29.4 6.6 54 115-168 73-143 (845)
77 1ydh_A AT5G11950; structural g 28.4 1.3E+02 0.0045 24.0 6.2 38 119-165 28-65 (216)
78 2w4l_A DCMP deaminse, deoxycyt 28.2 72 0.0025 24.7 4.5 38 128-167 110-148 (178)
79 3h5t_A Transcriptional regulat 28.2 87 0.003 25.2 5.1 46 123-168 175-239 (366)
80 3brs_A Periplasmic binding pro 28.1 68 0.0023 24.4 4.3 49 116-167 112-163 (289)
81 3i1j_A Oxidoreductase, short c 28.1 95 0.0033 23.4 5.1 40 121-165 23-62 (247)
82 1t35_A Hypothetical protein YV 27.9 1.1E+02 0.0038 23.8 5.6 40 118-166 19-58 (191)
83 3qsg_A NAD-binding phosphogluc 27.9 1E+02 0.0035 25.0 5.6 24 123-146 34-57 (312)
84 3sg0_A Extracellular ligand-bi 27.8 77 0.0026 25.0 4.7 44 123-167 145-189 (386)
85 4g6c_A Beta-hexosaminidase 1; 27.7 74 0.0025 27.4 4.9 49 119-168 107-173 (348)
86 2h6r_A Triosephosphate isomera 27.5 25 0.00085 27.8 1.7 44 124-168 70-114 (219)
87 2hsg_A Glucose-resistance amyl 27.3 82 0.0028 24.9 4.8 43 124-167 164-210 (332)
88 4ezb_A Uncharacterized conserv 27.1 84 0.0029 25.7 5.0 43 123-166 34-76 (317)
89 3jvd_A Transcriptional regulat 26.9 89 0.0031 24.9 5.0 44 123-166 160-205 (333)
90 3kjx_A Transcriptional regulat 26.7 62 0.0021 25.8 4.0 48 116-168 168-219 (344)
91 3hut_A Putative branched-chain 26.7 77 0.0026 25.0 4.5 42 125-167 127-169 (358)
92 3tev_A Glycosyl hyrolase, fami 26.5 43 0.0015 28.9 3.2 54 115-168 104-175 (351)
93 3kkj_A Amine oxidase, flavin-c 26.2 62 0.0021 22.6 3.4 23 124-147 13-35 (336)
94 2oxn_A Beta-hexosaminidase; TI 26.2 70 0.0024 27.4 4.4 50 118-168 91-157 (340)
95 1vl6_A Malate oxidoreductase; 26.0 33 0.0011 30.3 2.4 31 123-153 202-232 (388)
96 2j6i_A Formate dehydrogenase; 25.9 58 0.002 27.8 3.8 25 123-147 174-198 (364)
97 3awd_A GOX2181, putative polyo 25.9 1.1E+02 0.0038 23.1 5.1 39 121-164 22-60 (260)
98 3qua_A Putative uncharacterize 25.8 1.6E+02 0.0055 23.3 6.2 39 118-165 39-77 (199)
99 2jah_A Clavulanic acid dehydro 25.7 1.1E+02 0.0037 23.5 5.1 39 122-165 17-55 (247)
100 3tfo_A Putative 3-oxoacyl-(acy 25.6 1E+02 0.0035 24.3 5.1 39 122-165 14-52 (264)
101 3sbx_A Putative uncharacterize 25.5 1.4E+02 0.0049 23.4 5.8 39 118-165 30-68 (189)
102 3qi7_A Putative transcriptiona 25.4 78 0.0027 27.7 4.6 44 123-167 142-190 (371)
103 3sju_A Keto reductase; short-c 25.3 99 0.0034 24.3 4.9 39 122-165 34-72 (279)
104 3l49_A ABC sugar (ribose) tran 25.1 93 0.0032 23.6 4.6 48 116-166 106-157 (291)
105 3c85_A Putative glutathione-re 25.0 1.2E+02 0.0039 22.1 5.0 24 123-147 49-73 (183)
106 1xg5_A ARPG836; short chain de 24.7 93 0.0032 24.2 4.6 40 121-165 41-80 (279)
107 3o1i_D Periplasmic protein TOR 24.7 70 0.0024 24.5 3.8 43 124-167 118-168 (304)
108 4fnq_A Alpha-galactosidase AGA 24.7 95 0.0033 29.0 5.3 40 128-168 351-408 (729)
109 3uve_A Carveol dehydrogenase ( 24.4 1.2E+02 0.0042 23.6 5.3 43 122-165 21-75 (286)
110 4eyg_A Twin-arginine transloca 24.2 1.1E+02 0.0038 24.0 5.0 44 123-167 125-169 (368)
111 2a2l_A Unknown; structural gen 24.2 1.1E+02 0.0038 22.8 4.8 32 117-149 13-46 (145)
112 3ksm_A ABC-type sugar transpor 24.1 1E+02 0.0035 23.0 4.6 51 116-167 106-160 (276)
113 3llv_A Exopolyphosphatase-rela 23.9 71 0.0024 22.2 3.4 23 123-146 16-38 (141)
114 3pp8_A Glyoxylate/hydroxypyruv 23.9 95 0.0032 25.9 4.7 42 123-166 149-196 (315)
115 3hs3_A Ribose operon repressor 23.7 71 0.0024 24.5 3.7 46 116-167 106-154 (277)
116 3g1w_A Sugar ABC transporter; 23.7 1.1E+02 0.0037 23.6 4.7 47 116-167 108-158 (305)
117 2dri_A D-ribose-binding protei 23.5 1.1E+02 0.0039 23.2 4.8 49 116-167 104-155 (271)
118 3sql_A Glycosyl hydrolase fami 23.5 65 0.0022 29.6 3.9 50 119-168 125-192 (535)
119 2nxw_A Phenyl-3-pyruvate decar 23.4 68 0.0023 28.5 3.9 39 122-166 21-59 (565)
120 3s55_A Putative short-chain de 23.3 1.4E+02 0.0048 23.2 5.5 43 122-165 20-70 (281)
121 1jye_A Lactose operon represso 23.3 1.2E+02 0.0039 24.4 5.0 42 125-167 167-211 (349)
122 3t7c_A Carveol dehydrogenase; 23.1 1.4E+02 0.0048 23.7 5.5 44 121-165 37-88 (299)
123 2c7n_A Rabex-5, GEF 1, RAB gua 23.0 22 0.00076 24.8 0.5 13 10-22 18-30 (74)
124 2rjo_A Twin-arginine transloca 22.8 1.1E+02 0.0036 24.2 4.7 49 116-167 117-169 (332)
125 2rhc_B Actinorhodin polyketide 22.8 1.1E+02 0.0036 24.1 4.6 39 122-165 32-70 (277)
126 3ksu_A 3-oxoacyl-acyl carrier 22.5 1.1E+02 0.0036 23.9 4.5 42 122-165 21-62 (262)
127 3pxx_A Carveol dehydrogenase; 22.5 1.5E+02 0.0052 22.8 5.5 24 122-146 20-43 (287)
128 3pgx_A Carveol dehydrogenase; 21.9 1.5E+02 0.005 23.1 5.3 43 122-165 25-76 (280)
129 2jwk_A Protein TOLR; periplasm 21.8 1.5E+02 0.0053 18.4 5.6 30 136-167 45-74 (74)
130 4ibo_A Gluconate dehydrogenase 21.6 1.4E+02 0.0046 23.5 5.1 39 122-165 36-74 (271)
131 3h5o_A Transcriptional regulat 21.6 1.2E+02 0.0042 23.9 4.8 42 124-166 165-208 (339)
132 3uug_A Multiple sugar-binding 21.5 1.3E+02 0.0044 23.4 4.8 48 116-164 107-160 (330)
133 3ucx_A Short chain dehydrogena 21.4 1.5E+02 0.005 23.0 5.1 38 123-165 22-59 (264)
134 3tsc_A Putative oxidoreductase 21.3 1.6E+02 0.0056 22.8 5.4 43 122-165 21-72 (277)
135 3d02_A Putative LACI-type tran 21.2 1.5E+02 0.0052 22.5 5.2 46 116-165 108-157 (303)
136 3fpw_A HBPS, extracellular HAE 21.2 1.3E+02 0.0044 24.1 4.8 35 114-149 63-99 (192)
137 1fmc_A 7 alpha-hydroxysteroid 21.2 1.5E+02 0.005 22.3 5.0 38 121-163 20-57 (255)
138 2kzy_A ZNF216-A20, zfand5 prot 21.2 29 0.001 23.4 0.8 14 9-22 14-27 (62)
139 3pk0_A Short-chain dehydrogena 20.9 1.4E+02 0.0047 23.2 4.9 39 122-165 20-58 (262)
140 1zem_A Xylitol dehydrogenase; 20.9 1.1E+02 0.0039 23.5 4.4 39 122-165 17-55 (262)
141 1xu9_A Corticosteroid 11-beta- 20.8 1.3E+02 0.0045 23.4 4.8 37 122-163 38-74 (286)
142 3h7a_A Short chain dehydrogena 20.7 1.2E+02 0.0041 23.4 4.5 37 123-164 18-54 (252)
143 3d4o_A Dipicolinate synthase s 20.7 83 0.0029 25.3 3.7 24 123-147 165-188 (293)
144 3qiv_A Short-chain dehydrogena 20.7 1.6E+02 0.0054 22.3 5.1 38 121-163 18-55 (253)
145 3bmx_A Uncharacterized lipopro 20.4 79 0.0027 29.2 3.8 54 115-168 147-218 (642)
146 3oec_A Carveol dehydrogenase ( 20.4 1.7E+02 0.0058 23.5 5.5 42 123-165 57-106 (317)
147 3o8q_A Shikimate 5-dehydrogena 20.4 1.6E+02 0.0053 24.1 5.3 37 123-163 136-172 (281)
148 1jw9_B Molybdopterin biosynthe 20.3 1.7E+02 0.0059 23.1 5.4 41 123-163 41-96 (249)
149 4g81_D Putative hexonate dehyd 20.3 1.2E+02 0.0041 24.4 4.5 39 122-165 19-57 (255)
150 3cxt_A Dehydrogenase with diff 20.2 1.5E+02 0.0051 23.6 5.1 38 122-164 44-81 (291)
151 3qlj_A Short chain dehydrogena 20.1 1.6E+02 0.0055 23.6 5.3 44 121-165 36-85 (322)
No 1
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9.1e-51 Score=326.14 Aligned_cols=149 Identities=30% Similarity=0.472 Sum_probs=113.3
Q ss_pred ccccCCCCCccccccCccccccccccceeeeec-ccchHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCeEEEEEEeCCC
Q 030865 15 CDFFGTKAKPFNLLPSQTQRRSFILKPLVVEAR-ANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQN 93 (170)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~~~r~~R~~RiRkki~gt~~rPRL~V~kSNkhIyAQvIdd~~ 93 (170)
+.+|++++.++.+.+.++.+.+. ++.+||+ .++|++.|++||+|+|+||.||+++|||+||+||+|||||||||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~R~rR~~RiR~ki~gt~~rPRL~V~rSnkhIyAQvIdd~~ 86 (161)
T 3bbo_Q 10 SAFASSQQLPLLPKFAAAKPLLP---SFPIIEAKAKTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDSK 86 (161)
T ss_dssp ---------------------------------CCCCCCCCGGGTSCCSCSGGGGSSSCCCCEEEECSSCEEEEEECCTT
T ss_pred HhhccccccccccccCCCCCCCC---ceeeEeeccCchHHHHHHHHHHHHHhhccCCCCCEEEEEecCCeEEEEEEECCC
Confidence 34556665555555544322222 4455566 7899999999999999999999999999999999999999999999
Q ss_pred CeEEEEEechhhhhccCCC-CCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 94 KKCLFFGSTLQQSIRGNGN-PPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 94 gktLasaST~ek~ik~~l~-~s~~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
|+||++|||+|+++++.++ ++++|++||+.||++||+||+|+||++|+ ||||||+|||||+||||++||+||.
T Consensus 87 g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~Vv-FDRgg~~YhGRVkAladaaRe~GL~ 160 (161)
T 3bbo_Q 87 MHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVA-FDRGGYPYHGRVKALADAAREKGLQ 160 (161)
T ss_dssp SCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCC-CCCSSSCSSSTTHHHHHHHTTTTCC
T ss_pred CEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEE-EeCCCCcchHHHHHHHHHHHHhCCc
Confidence 9999999999999986432 26899999999999999999999999999 9999999999999999999999984
No 2
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=1.8e-46 Score=287.06 Aligned_cols=114 Identities=21% Similarity=0.343 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHH
Q 030865 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIK 130 (170)
Q Consensus 51 r~~~r~~R~~RiRkki~gt~~rPRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAk 130 (170)
|++.|.+||+|+|+||.| +++|||+||+||+|||||||||++|+||+||||+|+++++++ .+++|++||+.||++||+
T Consensus 2 ~~~~r~~r~~r~R~ki~~-~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~-~~~~n~~AA~~vG~llA~ 79 (116)
T 3r8s_O 2 KKSARIRRATRARRKLQE-LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQL-KYTGNKDAAAAVGKAVAE 79 (116)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTC-SCSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc-CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhcccc-CCCCCHHHHHHHHHHHHH
Confidence 677899999999999999 799999999999999999999999999999999999999875 478999999999999999
Q ss_pred HHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 131 TCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 131 ra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
||+++||++|+ ||||||+|||||+||||++||+||-
T Consensus 80 Ral~~GI~~vv-fDrgg~~yhGrV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 80 RALEKGIKDVS-FDRSGFQYHGRVQALADAAREAGLQ 115 (116)
T ss_dssp HHHTTTCCCCE-EECTTSCSSSHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCEEE-EecCCCcccHHHHHHHHHHHHhCCC
Confidence 99999999999 9999999999999999999999984
No 3
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=100.00 E-value=8.9e-46 Score=282.14 Aligned_cols=109 Identities=28% Similarity=0.437 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHH
Q 030865 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIK 130 (170)
Q Consensus 51 r~~~r~~R~~RiRkki~gt~~rPRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAk 130 (170)
|++.|.+||+|+|+||.||+ +|||+||+||+|||||||||++|+||+||||+|++++ ++|++||+.||++||+
T Consensus 3 ~~~~r~~r~~r~r~ki~gt~-rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k------~~n~~AA~~vG~llA~ 75 (112)
T 3v2d_S 3 RLTAYERRKFRVRNRIKRTG-RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK------GNKTEVARQVGRALAE 75 (112)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC------CCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCC-CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc------CCCHHHHHHHHHHHHH
Confidence 56788999999999999998 9999999999999999999999999999999999874 4799999999999999
Q ss_pred HHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 131 TCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 131 ra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
||+++||++|+ ||||||+|||||+||+|++||+||-
T Consensus 76 ra~~~GI~~vv-fDrgg~~yhGrV~Ala~~are~GL~ 111 (112)
T 3v2d_S 76 KALALGIKQVA-FDRGPYKYHGRVKALAEGAREGGLE 111 (112)
T ss_dssp HHHTTTCCBCE-EECTTSCSCSSTTHHHHHHHHTTCB
T ss_pred HHHHCCCCEEE-EecCCCcccHHHHHHHHHHHHcCCC
Confidence 99999999999 9999999999999999999999984
No 4
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=100.00 E-value=1.2e-45 Score=284.31 Aligned_cols=114 Identities=33% Similarity=0.509 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHH
Q 030865 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELI 129 (170)
Q Consensus 50 ~r~~~r~~R~~RiRkki~gt~~rPRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lA 129 (170)
+|+++|.+||+|+|+|+.||+++|||+||+||+|||||||||++|+||+||||+|++++ + .+++|++||+.||++||
T Consensus 6 ~~~~~r~~r~~R~r~ki~gt~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~-~~~~n~~AA~~vG~llA 82 (120)
T 1ovy_A 6 DRNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--L-DSTNNIEAAKKVGELVA 82 (120)
T ss_dssp ------------------CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--S-SCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--c-CCCCcHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999987 2 36799999999999999
Q ss_pred HHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 130 KTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 130 kra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
+||+++||++|+ ||||||+|||||+||+|++||+||.
T Consensus 83 ~Ral~~GI~~vv-fDrgg~~yhgrV~ala~~are~GL~ 119 (120)
T 1ovy_A 83 KRALEKGIKQVV-FDRGGYLYHGRVKALADAAREAGLE 119 (120)
T ss_dssp HHHHHHSSSCCC-CCSTTCSSCSSTHHHHHHHHHHHCC
T ss_pred HHHHHCCCCEEE-EecCCccccHHHHHHHHHHHHhCCc
Confidence 999999999999 9999999999999999999999984
No 5
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=100.00 E-value=6.1e-44 Score=272.75 Aligned_cols=108 Identities=24% Similarity=0.371 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhcCC---CCCCeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHH
Q 030865 52 TESAKIRNRRIQKKFNGT---PTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEEL 128 (170)
Q Consensus 52 ~~~r~~R~~RiRkki~gt---~~rPRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~l 128 (170)
+++|.+||+|+|+||.|| +++|||+||+||+|||||||||++|+||+||||+| + . +++|++||+.||++|
T Consensus 3 ~~~r~~r~~r~r~ki~gt~~~~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l-~----~~~n~~AA~~vG~ll 75 (114)
T 2zjr_L 3 TATTIRRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L-K----SGNKTDTAAAVGKAL 75 (114)
T ss_dssp -----CHHHHHHHHHHSCSTTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C-C----TTCSSSSHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h-c----CCCCHHHHHHHHHHH
Confidence 467889999999999999 99999999999999999999999999999999999 3 2 468999999999999
Q ss_pred HHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 129 IKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 129 Akra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
|+||+++||++|+ ||||||+|||||+||+|++||+||.
T Consensus 76 A~Ral~~GI~~vv-fDrgg~~yhgrV~Ala~~are~GL~ 113 (114)
T 2zjr_L 76 AAAAAEKGIKQVV-FDRGSYKYHGRVKALADAAREGGLD 113 (114)
T ss_dssp HHHHHTTCCCCCE-ECCCSSCSCSHHHHHHHHHHHHC--
T ss_pred HHHHHHCCCCEEE-EecCCccccHHHHHHHHHHHHhCCc
Confidence 9999999999999 9999999999999999999999984
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=1.3e-35 Score=243.02 Aligned_cols=112 Identities=18% Similarity=0.106 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCeEEEEEE--eCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHH
Q 030865 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLV--DDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEEL 128 (170)
Q Consensus 51 r~~~r~~R~~RiRkki~gt~~rPRL~V~kSNkhIyAQvI--dd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~l 128 (170)
|+|-+.-.+.|+|..+ +++|||+||+||+||||||| ||++|+||+||||+|++ +..++.+++|++||+.||++|
T Consensus 14 rregkTdy~~R~rl~~---~~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~ll 89 (187)
T 1vq8_N 14 RREARTDYHQRLRLLK---SGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLA 89 (187)
T ss_dssp HHTTCCCHHHHHHHHT---TCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHh---cCCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHH
Confidence 4444455678877776 47899999999999999999 99999999999999999 532234579999999999999
Q ss_pred HHHHHhCCCCEEEEecCCCCccc--hHHHHHHHHHHHcCCc
Q 030865 129 IKTCIALNITEISSYDRNGSRRG--ERMQAFEIPISRHGFL 167 (170)
Q Consensus 129 Akra~e~gI~~Vv~fDRgg~~Yh--GrVkAladaaRe~Gl~ 167 (170)
|+||+++||++|+ |||||++|| |||+||+|+|||+||.
T Consensus 90 A~Ral~kGI~~vv-fDrgg~~yh~GgRV~Ala~gAre~GL~ 129 (187)
T 1vq8_N 90 GLRAQEAGVEEAV-LDIGLNSPTPGSKVFAIQEGAIDAGLD 129 (187)
T ss_dssp HHHHHHTTCCBCE-EECTTSCCCTTCHHHHHHHHHHHTTCB
T ss_pred HHHHHHCCCCEEE-EcCCCceeccchHHHHHHHHhhcCCEe
Confidence 9999999999999 999999999 9999999999999995
No 7
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.7e-35 Score=244.88 Aligned_cols=113 Identities=19% Similarity=0.108 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCeEEEEEEe--CCCCeEEEEEechhhhh-ccCCCCCCCcHHHHHHHHH
Q 030865 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVD--DQNKKCLFFGSTLQQSI-RGNGNPPCSTIEAAERIGE 126 (170)
Q Consensus 50 ~r~~~r~~R~~RiRkki~gt~~rPRL~V~kSNkhIyAQvId--d~~gktLasaST~ek~i-k~~l~~s~~n~~AA~~VG~ 126 (170)
.|++.+..+|+|+|.++. .+|||+||+||+|||||||| |++|+||+||||+|+++ .++. .+++|++||+.||+
T Consensus 13 rRregkt~y~~R~rl~~~---~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~-~~~~N~~AA~~vG~ 88 (203)
T 3j21_O 13 RRREGKTNYRKRLKLLKS---GKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK-GHCGNTPSAYLLGL 88 (203)
T ss_dssp HHHHTCCCHHHHHHHHTT---CCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC-SCTTSHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHhc---CCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc-CCCCcHHHHHHHHH
Confidence 455666778999988876 58999999999999999998 88899999999999996 3552 46799999999999
Q ss_pred HHHHHHHhCCCCEEEEecCCCCcc--chHHHHHHHHHHHcCCc
Q 030865 127 ELIKTCIALNITEISSYDRNGSRR--GERMQAFEIPISRHGFL 167 (170)
Q Consensus 127 ~lAkra~e~gI~~Vv~fDRgg~~Y--hGrVkAladaaRe~Gl~ 167 (170)
+||+||+++||++|+ |||||++| ||||+||+|+|||+||.
T Consensus 89 llA~Ral~kGI~~vv-fDrgg~~y~~hgRV~Ala~gAre~GL~ 130 (203)
T 3j21_O 89 LIGYKAKQAGIEEAI-LDIGLHPPVRGSSVFAVLKGAVDAGLN 130 (203)
T ss_dssp HSSSSTTSSCCCCCE-EECCSSCCCTTSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCCEEE-EecCcceeccCcchhhhhhhcccCCee
Confidence 999999999999999 99999999 89999999999999994
No 8
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.96 E-value=2.1e-28 Score=211.39 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=93.9
Q ss_pred HHHHHHHhcCC----CCCCeEEEEecCCeEEEEEEeCC--CCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 030865 59 NRRIQKKFNGT----PTKPRLSVFCSDKQLYAMLVDDQ--NKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTC 132 (170)
Q Consensus 59 ~~RiRkki~gt----~~rPRL~V~kSNkhIyAQvIdd~--~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra 132 (170)
+.|.|.-+.+. +.+|||+||+||+|||||||||. +|+|||||||+|++-.++ ...++|.+||+.||.+||+||
T Consensus 31 ~~R~rLi~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~-k~g~tN~aAAy~tGlLlArRa 109 (297)
T 2zkr_n 31 YARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGV-KVGLTNYAAAYCTGLLLARRL 109 (297)
T ss_dssp HHHHHHHCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCC-CSCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCccccccc-ccCCCcHHHHHHHHHHHHHHH
Confidence 34555555543 35799999999999999999977 999999999999983343 335789999999999999999
Q ss_pred HhC---------------------------CCCEEEEecCCCCcc--chHHHHHHHHHHHcCCc
Q 030865 133 IAL---------------------------NITEISSYDRNGSRR--GERMQAFEIPISRHGFL 167 (170)
Q Consensus 133 ~e~---------------------------gI~~Vv~fDRgg~~Y--hGrVkAladaaRe~Gl~ 167 (170)
+++ ||.+|+ |||||++| ||||+|+++||||+||-
T Consensus 110 l~k~~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vv-fDrGl~ryttggRVfa~akGArDgGL~ 172 (297)
T 2zkr_n 110 LNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCY-LDAGLARTTTGNKVFGALKGAVDGGLS 172 (297)
T ss_dssp HCCCSCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEE-EECTTSCCCTTCHHHHHHHHHHHTTCB
T ss_pred HHhhccchhhcCccccccccccccccccCCCceEEE-EecCCcccCCCchHHHHHHHHHhcCcc
Confidence 999 999999 99999999 99999999999999985
No 9
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.93 E-value=3.6e-26 Score=197.83 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=93.6
Q ss_pred HHHHHHHhcCC----CCCCeEEEEecCCeEEEEEEeC--CCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 030865 59 NRRIQKKFNGT----PTKPRLSVFCSDKQLYAMLVDD--QNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTC 132 (170)
Q Consensus 59 ~~RiRkki~gt----~~rPRL~V~kSNkhIyAQvIdd--~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra 132 (170)
+.|.|.-+.+. +.+|||+||+||+||||||||| ++|+|||||||+|++..++ ...++|++||+.||++||+||
T Consensus 31 ~~R~rlv~qdknKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~-k~~~~N~~AAy~vG~LiAeRA 109 (301)
T 4a17_M 31 YARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGV-STGLASYAAAYATGLLLARRL 109 (301)
T ss_dssp HHHHHHHCCCTTSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTC-CSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccc-cCCCCcHHHHHHHHHHHHHHH
Confidence 34555555442 4689999999999999999998 6889999999999987775 246789999999999999999
Q ss_pred HhC--------CCC-------------------EEEEecCCCCcc--chHHHHHHHHHHHcCCc
Q 030865 133 IAL--------NIT-------------------EISSYDRNGSRR--GERMQAFEIPISRHGFL 167 (170)
Q Consensus 133 ~e~--------gI~-------------------~Vv~fDRgg~~Y--hGrVkAladaaRe~Gl~ 167 (170)
+++ |++ +++ ||+|+.+| ||||+|+++||+++||-
T Consensus 110 l~k~~~d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~-LD~Gl~rtt~G~RVfaalKGA~DgGL~ 172 (301)
T 4a17_M 110 LKQIGLDTVYAGQTKVDGAYFNVDEDQKEKKPFKAI-LDAGLVRTTTGNRVFGVLKGACDGGIN 172 (301)
T ss_dssp HHHHTCTTTCCCCSSCCCSCCCGGGTCCSSCCCBCE-EECTTSCCCSSCHHHHHHHHHHHTTCB
T ss_pred HHhcCCcccccCccccccceeecccccCCCCceEEE-EecCCcccCcccchhhhhhcccccCcc
Confidence 999 999 588 99999999 99999999999999994
No 10
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.93 E-value=7.4e-26 Score=195.68 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=88.9
Q ss_pred CCCCeEEEEecCCeEEEEEEeC--CCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHHHhC--------CCCE
Q 030865 70 PTKPRLSVFCSDKQLYAMLVDD--QNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTCIAL--------NITE 139 (170)
Q Consensus 70 ~~rPRL~V~kSNkhIyAQvIdd--~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra~e~--------gI~~ 139 (170)
+.+|||+||+||+||||||||| ++|+|||||||+|++..++ ...++|++||+.||++||+||+++ |+++
T Consensus 46 t~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~-k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e 124 (297)
T 3u5e_D 46 TPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGI-THGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEE 124 (297)
T ss_dssp CCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTC-CSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSS
T ss_pred CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhccc-CCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccc
Confidence 4799999999999999999998 7899999999999987765 346789999999999999999999 9998
Q ss_pred -------------------EEEecCCCCcc--chHHHHHHHHHHHcCCc
Q 030865 140 -------------------ISSYDRNGSRR--GERMQAFEIPISRHGFL 167 (170)
Q Consensus 140 -------------------Vv~fDRgg~~Y--hGrVkAladaaRe~Gl~ 167 (170)
++ ||+|+.+| ||||+|+++||+++||-
T Consensus 125 ~~g~~~~ve~~~~~~~~f~~~-LDvGl~rtttG~RVfaalKGA~DgGL~ 172 (297)
T 3u5e_D 125 VEGEYELTEAVEDGPRPFKVF-LDIGLQRTTTGARVFGALKGASDGGLY 172 (297)
T ss_dssp CCCCCCCCCCCSSSCCCCBCE-EECTTCCCCTTCSHHHHHHHHHHHTCB
T ss_pred cccceeccccccCCCCceeEE-EecCCCccCccceehhhhhcccccCcc
Confidence 88 99999999 99999999999999994
No 11
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=99.87 E-value=1.3e-22 Score=175.65 Aligned_cols=104 Identities=17% Similarity=0.084 Sum_probs=91.3
Q ss_pred HHHHHHHhcCC----CCCCeEEEEecCCeEEEEEEeC--CCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 030865 59 NRRIQKKFNGT----PTKPRLSVFCSDKQLYAMLVDD--QNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTC 132 (170)
Q Consensus 59 ~~RiRkki~gt----~~rPRL~V~kSNkhIyAQvIdd--~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra 132 (170)
+.|.|.-+.+. +.+|||+ ||+||||||||+ ++++|||+|||.|++.+++ ...++|.+||+.||.+||+||
T Consensus 35 ~~R~rLi~qdknKyntpKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG~-k~g~~N~aAAy~tGlLiA~RA 110 (304)
T 3iz5_Q 35 RARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGL-EVGLTNYAAAYCTGLLLARRV 110 (304)
T ss_dssp HHHHHHHTTSCCEEECCCSSSS---CSSCCEEEEEEEETTEEEEEEEEETTTGGGGSC-CSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccccCCCCceee---cCCcEEEEEEecCCCCCEEEEEEecCchhhccc-CCCCCcHHHHHHHHHHHHHHH
Confidence 35555555554 3589999 999999999997 5779999999999998876 346789999999999999999
Q ss_pred HhC--------CCCE------------------EEEecCCCCccc--hHHHHHHHHHHHcCCc
Q 030865 133 IAL--------NITE------------------ISSYDRNGSRRG--ERMQAFEIPISRHGFL 167 (170)
Q Consensus 133 ~e~--------gI~~------------------Vv~fDRgg~~Yh--GrVkAladaaRe~Gl~ 167 (170)
+++ |+++ ++ ||+|+.+|+ |||+|+++|++++||-
T Consensus 111 l~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~f~~~-LDiGL~rtttG~RVfaalKGA~DgGL~ 172 (304)
T 3iz5_Q 111 LTLRGLDQEYEGNVEATGEDYYVEPADERRPFRAL-LDVGLIRTTTGNRVFGALKGALDGGLD 172 (304)
T ss_dssp HTTCSSCCCCCSSSCCCSCCCSSCCSSCSCCCSCE-EECTTCCCCSSCHHHHHHHHHHTTTCC
T ss_pred HHhhCCccccCCccccccceecccccCCCCCceEE-EecCCcccccCceeEEeeccccccCcc
Confidence 999 9998 88 999999998 9999999999999994
No 12
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=97.16 E-value=0.0029 Score=48.66 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=70.1
Q ss_pred CCCeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCcc
Q 030865 71 TKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRR 150 (170)
Q Consensus 71 ~rPRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~Y 150 (170)
..+.+.|+.|-++..+.|-|. +|.+++.+|+-...+++. ..++-.||..+++.++++|+|.||+.|..+=+|. -
T Consensus 15 ~~gi~hI~as~NNTivtiTd~-~G~~~~~~SaG~~gfKg~---rk~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~-G- 88 (129)
T 2vqe_K 15 ASGRAYIHASYNNTIVTITDP-DGNPITWSSGGVIGYKGS---RKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGT-G- 88 (129)
T ss_dssp SEEEEEEEECSSCEEEEEECT-TSCEEEECCTTTTTCCSG---GGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESC-C-
T ss_pred cceEEEEEecCCCEEEEEEcC-CCCEEEEEeccceeEcCC---CcCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECC-C-
Confidence 458999999999999999864 567778888877777763 3578899999999999999999999887566652 1
Q ss_pred chHHHHHHHHHHHcCCc
Q 030865 151 GERMQAFEIPISRHGFL 167 (170)
Q Consensus 151 hGrVkAladaaRe~Gl~ 167 (170)
-|| +++..++...||.
T Consensus 89 ~Gr-e~airaL~~~Gl~ 104 (129)
T 2vqe_K 89 AGR-EQAIRALQASGLQ 104 (129)
T ss_dssp TTH-HHHHHHHHTSSSE
T ss_pred CCH-HHHHHHHHHCCCE
Confidence 244 4566777777763
No 13
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=97.00 E-value=0.0029 Score=49.38 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=69.1
Q ss_pred CCCeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCcc
Q 030865 71 TKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRR 150 (170)
Q Consensus 71 ~rPRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~Y 150 (170)
..+.+.|+.|-++..+.|-| .+|.+++.+|+-...+++. ..++-.||..+++.++++|+|.||+.|..+=+|. -
T Consensus 28 ~~gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~---rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~-G- 101 (140)
T 3bbn_K 28 PKGVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGT---KRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGP-G- 101 (140)
T ss_dssp CCCEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTT---SCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESC-S-
T ss_pred eeeEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEccc---ccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECC-C-
Confidence 56899999999999999986 4567788888877777763 3588899999999999999999999887566662 1
Q ss_pred chHHHHHHHHHHHcCC
Q 030865 151 GERMQAFEIPISRHGF 166 (170)
Q Consensus 151 hGrVkAladaaRe~Gl 166 (170)
-|| +++..++...||
T Consensus 102 ~GR-eaairaL~~~Gl 116 (140)
T 3bbn_K 102 LGR-DAALRAIRRSGI 116 (140)
T ss_dssp TTS-SHHHHHHHTTTC
T ss_pred CcH-HHHHHHHHHCCC
Confidence 133 255566666676
No 14
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.99 E-value=0.0051 Score=47.85 Aligned_cols=93 Identities=14% Similarity=0.007 Sum_probs=69.9
Q ss_pred CCCeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCC--CC
Q 030865 71 TKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRN--GS 148 (170)
Q Consensus 71 ~rPRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg--g~ 148 (170)
....+.|+-|-++..+.|-|..+..+|+.+|.-..-+++. ..++--||...++.++++|++.||+.|..+=+| |+
T Consensus 13 ~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~---~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~ 89 (137)
T 3j20_M 13 KWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADR---DEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGS 89 (137)
T ss_dssp EEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTT---TSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSS
T ss_pred cceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCC---ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCC
Confidence 3568999999999999999887768998888877666653 347788999999999999999999988766666 22
Q ss_pred c---c-chHHHHHHHHHHHcCCc
Q 030865 149 R---R-GERMQAFEIPISRHGFL 167 (170)
Q Consensus 149 ~---Y-hGrVkAladaaRe~Gl~ 167 (170)
+ + -|| +++..+|...||.
T Consensus 90 ~~~~pG~Gr-esairaL~~~Gl~ 111 (137)
T 3j20_M 90 KSKTPGPGA-QAAIRALARAGLK 111 (137)
T ss_dssp SCCSCCTHH-HHHHHHHHHHTCE
T ss_pred CCcCCCCcH-HHHHHHHHhCCCE
Confidence 2 2 244 3334455556763
No 15
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=96.42 E-value=0.015 Score=45.82 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=66.4
Q ss_pred CCeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCC--CCc
Q 030865 72 KPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRN--GSR 149 (170)
Q Consensus 72 rPRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg--g~~ 149 (170)
.+.+.|+-|-++..+.|-|..+..++..+|.- ..+++. ...++--||...++.++++|++.||+.|..+=|| |++
T Consensus 28 ~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg-~~~k~~--r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg~~ 104 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDLSGRETLVRVTGG-MKVKAD--REESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVE 104 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECTTCCSEEEECCHH-HHCSSG--GGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCTTS
T ss_pred eeEEEEEccCCCEEEEEECCCCCEEEEEecCc-ceEeCC--CCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCCCC
Confidence 56899999999999999987777676664443 333331 1246778999999999999999999988756664 222
Q ss_pred ---c-chHHHHHHHHHHHcCCc
Q 030865 150 ---R-GERMQAFEIPISRHGFL 167 (170)
Q Consensus 150 ---Y-hGrVkAladaaRe~Gl~ 167 (170)
+ -|| +++..+|...||.
T Consensus 105 ~kgpG~Gr-esairaL~~~Glk 125 (151)
T 2xzm_K 105 TKQPGPGA-QSALRALARSGMK 125 (151)
T ss_dssp CCSCCSHH-HHHHHHHHHTSCE
T ss_pred ccCCCccH-HHHHHHHHHCCCE
Confidence 2 244 5666777777863
No 16
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=96.30 E-value=0.024 Score=42.74 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=63.4
Q ss_pred CeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccch
Q 030865 73 PRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGE 152 (170)
Q Consensus 73 PRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhG 152 (170)
-.+.|+-|-++..+.|-|. +|.+++.+|+-...+++. ..++-.||...++.++++|+|.||+.|..+=+|. -+ |
T Consensus 7 gi~hI~as~NNTivtiTD~-~G~~i~~~S~G~~gfKg~---rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~-G~-G 80 (117)
T 3r8n_K 7 GVAHIHASFNNTIVTITDR-QGNALGWATAGGSGFRGS---RKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGP-GP-G 80 (117)
T ss_dssp EEEEEEECSSCEEEEEECT-TSCCSEEEETGGGSCCGG---GGSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECS-SS-S
T ss_pred eEEEEEcccCCEEEEEEcC-CCCEEEEEcCCccccCCC---ccCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCC-Cc-c
Confidence 4678999999999999865 456888888877777763 3477889999999999999999999877555552 11 2
Q ss_pred HHHHHHHHHHHcCC
Q 030865 153 RMQAFEIPISRHGF 166 (170)
Q Consensus 153 rVkAladaaRe~Gl 166 (170)
| +++..+|...|+
T Consensus 81 r-~~airaL~~~Gl 93 (117)
T 3r8n_K 81 R-ESTIRALNAAGF 93 (117)
T ss_dssp T-THHHHHHHHTTC
T ss_pred H-HHHHHHHHhCCC
Confidence 2 233334445666
No 17
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=94.41 E-value=0.079 Score=41.11 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=64.6
Q ss_pred CCCCeEEEEecCCeEEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecC--CC
Q 030865 70 PTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDR--NG 147 (170)
Q Consensus 70 ~~rPRL~V~kSNkhIyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra~e~gI~~Vv~fDR--gg 147 (170)
-....+.|+-|-++.++.|-|..+..+ ...|+-...+++. ...++--||...++.++++|+|+||+.|..+=| ||
T Consensus 12 ~~~gi~hI~asfNNTivtvTD~~G~~~-~~~ssG~~gfKg~--r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~gg 88 (137)
T 3u5c_O 12 QVFGVARIYASFNDTFVHVTDLSGKET-IARVTGGMKVKAD--RDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGG 88 (137)
T ss_dssp CCEEECCEEEETTEEEECCEETTSSSC-CCCCBTTTTSCCS--TTTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSCT
T ss_pred eeeEEEEEEccCCCEEEEEEcCCCCEE-EEEeCCCcEEeCC--cccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccCC
Confidence 345678899999999999998766655 4455555466652 124777899999999999999999998775554 33
Q ss_pred Ccc----chHHHHHHHHHHHcCCc
Q 030865 148 SRR----GERMQAFEIPISRHGFL 167 (170)
Q Consensus 148 ~~Y----hGrVkAladaaRe~Gl~ 167 (170)
++. -|| ++...+|...||.
T Consensus 89 ~~~kgpG~Gr-~sairaL~~~Gl~ 111 (137)
T 3u5c_O 89 TRTKTPGPGG-QAALRALARSGLR 111 (137)
T ss_dssp TSCCSCCGGG-HHHHHHHHTTTCE
T ss_pred CcccCCCcch-HHHHHHHHhCCCE
Confidence 322 233 3444555556763
No 18
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=71.08 E-value=7.4 Score=32.85 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=54.3
Q ss_pred EEEEEEeCCCCeEEEEEechhhhhccCCCCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHH
Q 030865 84 LYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISR 163 (170)
Q Consensus 84 IyAQvIdd~~gktLasaST~ek~ik~~l~~s~~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe 163 (170)
+.--||.+.+..=.+-.||-...-+.. ...-.+++|. .-+++.|++.|-+|.-+|-.+-.-++|+|+++-+
T Consensus 115 ~VNaLvsPTG~~G~VkIsTGp~Ss~~~--~~~V~vetAi-------aml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~ 185 (249)
T 3m0z_A 115 VVNGLVSPTGTPGMVKISTGPLSSGAA--DGIVPLETAI-------ALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAA 185 (249)
T ss_dssp EEEEEEBCCSSTTEEECCCSTTGGGSS--CCEEEHHHHH-------HHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCccceEEeccCccccCCC--CceeeHHHHH-------HHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHH
Confidence 333466666555566777765553321 1234566654 3468899999999999999999999999999999
Q ss_pred cCCc
Q 030865 164 HGFL 167 (170)
Q Consensus 164 ~Gl~ 167 (170)
+||.
T Consensus 186 ~g~~ 189 (249)
T 3m0z_A 186 HDFW 189 (249)
T ss_dssp TTCE
T ss_pred cCce
Confidence 9985
No 19
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=65.10 E-value=8.6 Score=32.86 Aligned_cols=75 Identities=17% Similarity=0.095 Sum_probs=53.3
Q ss_pred EEEEEEeCCCCeEEEEEechhhh-hccCCCCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHH
Q 030865 84 LYAMLVDDQNKKCLFFGSTLQQS-IRGNGNPPCSTIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPIS 162 (170)
Q Consensus 84 IyAQvIdd~~gktLasaST~ek~-ik~~l~~s~~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaR 162 (170)
+.--||.+.+..=.+-.||-... -+. ....-.+++|. .-+++.|++.|-+|.-+|-.+-.-++|+|+++-
T Consensus 137 ~VNaLVSPTG~~G~VkISTGp~Sas~~--~~~~V~vetAi-------aml~dmG~~SvKffPM~Gl~~leEl~avAkAca 207 (275)
T 3m6y_A 137 WINSLVSPTGKVGYVNISTGPISAAGE--EKAIVPIKTAI-------ALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACA 207 (275)
T ss_dssp EEEEEEBCCSSTTEEECCCSTTGGGSS--SCCEEEHHHHH-------HHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcceEEeccCCCccccC--CCceeeHHHHH-------HHHHHcCCCeeeEeecCCcccHHHHHHHHHHHH
Confidence 33346666655556667776544 222 11234566654 346788999999999999999999999999999
Q ss_pred HcCCc
Q 030865 163 RHGFL 167 (170)
Q Consensus 163 e~Gl~ 167 (170)
++||.
T Consensus 208 ~~g~~ 212 (275)
T 3m6y_A 208 EEGFA 212 (275)
T ss_dssp HHTCE
T ss_pred HcCce
Confidence 99985
No 20
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=57.76 E-value=17 Score=29.23 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCC
Q 030865 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGF 166 (170)
Q Consensus 118 ~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl 166 (170)
.++|+.+|+.||++ |+.=|. ||. .|-+.|.++++.++|-
T Consensus 55 ~~~A~~lg~~La~~----g~~lVs----GGg--~GiM~aa~~gAl~~gG 93 (217)
T 1wek_A 55 YEAGYRLGRALAEA----GFGVVT----GGG--PGVMEAVNRGAYEAGG 93 (217)
T ss_dssp HHHHHHHHHHHHHH----TCEEEE----CSC--SHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC----CCEEEe----CCh--hhHHHHHHHHHHHcCC
Confidence 46888888888875 777666 655 6999999999999873
No 21
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=54.10 E-value=54 Score=24.19 Aligned_cols=44 Identities=7% Similarity=0.181 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEecCCeEEEEEEeCCCCeEE
Q 030865 54 SAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCL 97 (170)
Q Consensus 54 ~r~~R~~RiRkki~gt~~rPRL~V~kSNkhIyAQvIdd~~gktL 97 (170)
....--.++-+.+......-+..|......++++|+|..+|++|
T Consensus 39 el~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVI 82 (117)
T 2hc5_A 39 NLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVI 82 (117)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEE
Confidence 33344456666666655667999999999999999999999997
No 22
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=51.20 E-value=30 Score=26.52 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC-C-CccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN-G-SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg-g-~~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++. +++.+.+.|..+|.++.-. + .....|...|.+++.++|+.
T Consensus 109 d~~~~~~~----~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~ 158 (289)
T 1dbq_A 109 NAFEGGYM----AGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIK 158 (289)
T ss_dssp CHHHHHHH----HHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCC
T ss_pred CcHHHHHH----HHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCC
Confidence 34555554 4555555698888734221 1 23467999999999999974
No 23
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=50.50 E-value=29 Score=26.85 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCC---ccchHHHHHHHHHHHcCCc
Q 030865 124 IGEELIKTCIALNITEISSYDRNGS---RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg~---~YhGrVkAladaaRe~Gl~ 167 (170)
.|+.+++.+.+.|..+|.++ -+.. ....|...|.++++++|+.
T Consensus 114 ~g~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~ 159 (288)
T 3gv0_A 114 YAYEAVERLAQCGRKRIAVI-VPPSRFSFHDHARKGFNRGIRDFGLT 159 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-CCCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCCeEEEE-cCCcccchHHHHHHHHHHHHHHcCCC
Confidence 45555666667799999844 3322 2346999999999999974
No 24
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=49.34 E-value=26 Score=26.62 Aligned_cols=48 Identities=4% Similarity=0.109 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC-CC-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN-GS-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg-g~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++. +++.+.+.|..+|.++--. +. ....|...|.+++.++|+.
T Consensus 103 d~~~~~~~----a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 152 (275)
T 3d8u_A 103 DHFEVGKA----CTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLT 152 (275)
T ss_dssp CHHHHHHH----HHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHH----HHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCC
Confidence 35455444 4555556798888734221 12 2356999999999999974
No 25
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=48.09 E-value=42 Score=25.27 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC--C-CccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN--G-SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg--g-~~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++ .+++.+.+.|..+|.++.-. + .....|...|.+++.++|+.
T Consensus 98 d~~~~~~----~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~ 148 (255)
T 1byk_A 98 DDEGAIK----ILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLH 148 (255)
T ss_dssp CHHHHHH----HHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHH----HHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCC
Confidence 3445544 44555556799988844321 1 23467999999999999974
No 26
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=47.95 E-value=39 Score=26.05 Aligned_cols=48 Identities=6% Similarity=0.033 Sum_probs=31.5
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC-C-CccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN-G-SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg-g-~~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++ .+++.+.+.|..+|.++.-. + .....|...|.+++.++|+.
T Consensus 108 D~~~~g~----~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 157 (290)
T 3clk_A 108 DDEDIGY----QATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIA 157 (290)
T ss_dssp CHHHHHH----HHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHH----HHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCC
Confidence 3545544 45555556798888733221 2 22357999999999999974
No 27
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=47.72 E-value=29 Score=26.79 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC---CccchHHHHHHHHHHHcCCc
Q 030865 124 IGEELIKTCIALNITEISSYDRNG---SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg---~~YhGrVkAladaaRe~Gl~ 167 (170)
.|+.+++.+.+.|..+|.++ .+. .....|...|.+++.++|+.
T Consensus 112 ~g~~a~~~L~~~G~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~ 157 (291)
T 3egc_A 112 GARTAVEYLIARGHTRIGAI-VGSAGLMTSRERLKGFRAAMSAAGLP 157 (291)
T ss_dssp HHHHHHHHHHHTTCCSEEEE-CSCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCEEEEE-eCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 34455555566799999834 332 22357999999999999975
No 28
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=47.49 E-value=31 Score=26.45 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCEEEEecCC-C-CccchHHHHHHHHHHHcCCc
Q 030865 125 GEELIKTCIALNITEISSYDRN-G-SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 125 G~~lAkra~e~gI~~Vv~fDRg-g-~~YhGrVkAladaaRe~Gl~ 167 (170)
|+.+++.+.+.|..+|.++--. + .....|...|.+++.++|+.
T Consensus 106 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 150 (277)
T 3cs3_A 106 ATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIP 150 (277)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCC
Confidence 4444555555798888733221 1 22357999999999999963
No 29
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=46.93 E-value=30 Score=26.42 Aligned_cols=44 Identities=32% Similarity=0.318 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCCc-cchHHHHHHHHHHHcCCcc
Q 030865 124 IGEELIKTCIALNITEISSYDRNGSR-RGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg~~-YhGrVkAladaaRe~Gl~~ 168 (170)
.|+.+++.+.+.|..+|. |=.+... ...|...|.+++.++|+..
T Consensus 105 ~g~~a~~~L~~~G~~~i~-~i~~~~~~~~~R~~gf~~~l~~~~~~~ 149 (280)
T 3gyb_A 105 GAEIATKHLIDLGHTHIA-HLRVGSGAGLRRFESFEATMRAHGLEP 149 (280)
T ss_dssp HHHHHHHHHHHTTCCSEE-EECCSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCeEE-EEeCCCchHHHHHHHHHHHHHHcCcCC
Confidence 345555555667999888 4444222 5679999999999999754
No 30
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=46.92 E-value=43 Score=25.37 Aligned_cols=48 Identities=10% Similarity=-0.072 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC--C----Cccc-hHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN--G----SRRG-ERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg--g----~~Yh-GrVkAladaaRe~Gl~ 167 (170)
.|.++++ .+++.+.+.|..+|.++--. + ...+ .|...|.+++.++|+.
T Consensus 97 d~~~~~~----~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~ 151 (276)
T 2h0a_A 97 DNRLGGR----LAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRP 151 (276)
T ss_dssp CSHHHHH----HHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHH----HHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCC
Confidence 3555544 45555566799998733221 1 2235 7899999999999974
No 31
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=46.65 E-value=32 Score=26.80 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCEEEEecCC-C-CccchHHHHHHHHHHHcCCc
Q 030865 117 TIEAAERIGEELIKTCIALNITEISSYDRN-G-SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 117 n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg-g-~~YhGrVkAladaaRe~Gl~ 167 (170)
|.++++.++ +.+.+.|..+|.++--. + .....|...|.++++++|+.
T Consensus 115 ~~~~~~~a~----~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 163 (295)
T 3hcw_A 115 NILASENLT----RHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLD 163 (295)
T ss_dssp HHHHHHHHH----HHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHH----HHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCC
Confidence 455555544 45555699998844211 1 22357999999999999974
No 32
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=46.19 E-value=31 Score=26.98 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCEEEEecCCC---CccchHHHHHHHHHHHcCCcc
Q 030865 125 GEELIKTCIALNITEISSYDRNG---SRRGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 125 G~~lAkra~e~gI~~Vv~fDRgg---~~YhGrVkAladaaRe~Gl~~ 168 (170)
|+.+++.+.+.|..+|. |=.+. .....|...|.++++++|+..
T Consensus 119 g~~a~~~L~~~G~~~I~-~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (303)
T 3kke_A 119 GGIATEHLITLGHSRIA-FISGTAIHDTAQRRKEGYLETLASAGLRS 164 (303)
T ss_dssp HHHHHHHHHHTTCCSEE-EEESCSSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCeEE-EEeCCCcCccHHHHHHHHHHHHHHcCCCC
Confidence 44455555667999888 43332 223579999999999999753
No 33
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=45.04 E-value=34 Score=26.58 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHHHHHHhCC--CCEEEEecCCC--C-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALN--ITEISSYDRNG--S-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~g--I~~Vv~fDRgg--~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++. +++.+.+.| ..++.++ .+. . ....|.+.|.+++.++|+.
T Consensus 111 D~~~~g~~----a~~~l~~~g~~~~~i~~i-~g~~~~~~~~~R~~Gf~~~l~~~g~~ 162 (297)
T 3rot_A 111 DNLLAGKK----LGEKALELTPSAKRALVL-NPQPGHIGLEKRAYGIKTILQDKGIF 162 (297)
T ss_dssp CHHHHHHH----HHHHHHHHCTTCCEEEEE-ESCTTCHHHHHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHH----HHHHHHHhcCCCceEEEE-eCCCCcHHHHHHHHHHHHHHHhcCCe
Confidence 35555444 455555556 7888733 332 2 2347999999999999874
No 34
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=44.42 E-value=4.7 Score=32.83 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=0.0
Q ss_pred CchhhHhhhhccccccccCCCCCcccc
Q 030865 1 MSLTKAAAALQFNACDFFGTKAKPFNL 27 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (170)
|+|.-++..|...+.+|||.++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (191)
T 3bbo_W 4 MVLQSSFTSLSLSSNSFLGQRLFPSPT 30 (191)
T ss_dssp ---------------------------
T ss_pred hhhhhhhhccccccccccCcccCCCcc
Confidence 566677777778889999999876665
No 35
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=43.99 E-value=32 Score=26.44 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCEEEEecCC-CC-ccchHHHHHHHHHHHcCCc
Q 030865 124 IGEELIKTCIALNITEISSYDRN-GS-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRg-g~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|+.+++.+.+.|..+|.++--. +. ....|...|.+++.++|+.
T Consensus 109 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 154 (288)
T 2qu7_A 109 AAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLN 154 (288)
T ss_dssp HHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34455555566799888733211 22 2357999999999999974
No 36
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=43.82 E-value=10 Score=31.56 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHcCCc
Q 030865 152 ERMQAFEIPISRHGFL 167 (170)
Q Consensus 152 GrVkAladaaRe~Gl~ 167 (170)
-|++||.|++|.+||+
T Consensus 226 qrikAlEdalR~HGLI 241 (242)
T 3c9i_A 226 RRTKAMEDALRAHGLI 241 (242)
T ss_dssp HHHHHHHHHHHHHTSB
T ss_pred HHHHHHHHHHHhccCC
Confidence 4899999999999997
No 37
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=43.75 E-value=38 Score=25.84 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCEEEEec-CCCCccchHHHHHHHHHHHcCCcc
Q 030865 124 IGEELIKTCIALNITEISSYD-RNGSRRGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fD-Rgg~~YhGrVkAladaaRe~Gl~~ 168 (170)
.|+.+++.+.+.|..++.++- ........|...|.+++.++|+..
T Consensus 124 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~ 169 (298)
T 3tb6_A 124 GGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFP 169 (298)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 345555556667988877332 122223579999999999999854
No 38
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=43.58 E-value=52 Score=25.30 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=37.3
Q ss_pred CcHHHHHHHHHHHHHHHHh--------CCCCEEEEec-CCCC-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIA--------LNITEISSYD-RNGS-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e--------~gI~~Vv~fD-Rgg~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++.+++.|++.+++ .|..+|.++- ..+. ....|...|.+++.++|+.
T Consensus 111 d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 172 (309)
T 2fvy_A 111 DSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 172 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCc
Confidence 5778888888888887754 6777766232 1122 2357999999999999974
No 39
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=42.45 E-value=38 Score=26.96 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC---CccchHHHHHHHHHHHcCCc
Q 030865 123 RIGEELIKTCIALNITEISSYDRNG---SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg---~~YhGrVkAladaaRe~Gl~ 167 (170)
..|..+++.+.+.|..+|. |=-+. .....|...|.+++.++|+.
T Consensus 167 ~~~~~a~~~L~~~G~~~I~-~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 213 (338)
T 3dbi_A 167 QTSFNAVAELINAGHQEIA-FLTGSMDSPTSIERLAGYKDALAQHGIA 213 (338)
T ss_dssp HHHHHHHHHHHHTTCCSEE-EECCCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCCEEE-EEeCCCCCccHHHHHHHHHHHHHHCCCC
Confidence 3455556666778999998 43332 22357999999999999974
No 40
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=42.17 E-value=32 Score=26.02 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCEEEEecCC-C-CccchHHHHHHHHHHHcCCc
Q 030865 124 IGEELIKTCIALNITEISSYDRN-G-SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRg-g-~~YhGrVkAladaaRe~Gl~ 167 (170)
.|+.+++.+.+.|..++.++.-. + .....|...|.+++.++|+.
T Consensus 107 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~ 152 (272)
T 3o74_A 107 ASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGE 152 (272)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSE
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCC
Confidence 45556666677899998844321 1 22357999999999999964
No 41
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=41.32 E-value=55 Score=23.13 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC
Q 030865 123 RIGEELIKTCIALNITEISSYDRNG 147 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg 147 (170)
.+|..+|+.+.+.|++-++ +|++.
T Consensus 17 ~~G~~la~~L~~~g~~v~v-id~~~ 40 (140)
T 3fwz_A 17 RVGSLLGEKLLASDIPLVV-IETSR 40 (140)
T ss_dssp HHHHHHHHHHHHTTCCEEE-EESCH
T ss_pred HHHHHHHHHHHHCCCCEEE-EECCH
Confidence 5899999999999998777 99973
No 42
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=41.25 E-value=30 Score=24.20 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE
Q 030865 119 EAAERIGEELIKTCIALNITEI 140 (170)
Q Consensus 119 ~AA~~VG~~lAkra~e~gI~~V 140 (170)
..+|.+|..|++..+..|++++
T Consensus 31 K~SYaIG~~mG~~L~~~g~~~l 52 (88)
T 3b09_A 31 HASYGVGRQMGEQLAANSFEGI 52 (88)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTC
T ss_pred HHHHHHHHHHHHHHHhCCcccc
Confidence 5899999999999999888653
No 43
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=41.14 E-value=32 Score=26.23 Aligned_cols=45 Identities=7% Similarity=-0.015 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC---CccchHHHHHHHHHHHcCCcc
Q 030865 123 RIGEELIKTCIALNITEISSYDRNG---SRRGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg---~~YhGrVkAladaaRe~Gl~~ 168 (170)
..|+.+++.+.+.|..+|. |=.+. .....|...|.+++.++|+..
T Consensus 108 ~~g~~a~~~L~~~G~~~i~-~i~~~~~~~~~~~R~~gf~~~l~~~~~~~ 155 (277)
T 3e61_A 108 KGGQLQAEVVRKGKGKNVL-IVHENLLIDAFHQRVQGIKYILDQQRIDY 155 (277)
T ss_dssp HHHHHHHHHHHHTTCCSEE-EEESCTTSHHHHHHHHHHHHHHHC---CE
T ss_pred HHHHHHHHHHHHCCCCeEE-EEeCCCCCccHHHHHHHHHHHHHHcCCCc
Confidence 3455666666667999888 43332 223579999999999999753
No 44
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=40.48 E-value=43 Score=26.04 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCEEEEecCC-C-CccchHHHHHHHHHHHcCCcc
Q 030865 124 IGEELIKTCIALNITEISSYDRN-G-SRRGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRg-g-~~YhGrVkAladaaRe~Gl~~ 168 (170)
.|+.+++.+.+.|..+|.++.-. + .....|...|.++++++|+..
T Consensus 113 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 159 (294)
T 3qk7_A 113 GASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMP 159 (294)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCC
Confidence 34445555566799988834222 1 223579999999999999753
No 45
>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum}
Probab=40.35 E-value=20 Score=21.04 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.3
Q ss_pred ecCCCCccchHHHHHHHHHH
Q 030865 143 YDRNGSRRGERMQAFEIPIS 162 (170)
Q Consensus 143 fDRgg~~YhGrVkAladaaR 162 (170)
|+||||-++--|.-+.|++-
T Consensus 1 fnrggynfgksvrhvid~ig 20 (33)
T 2jui_A 1 FNRGGYNFGKSVRHVVDAIG 20 (33)
T ss_dssp CCSCSCCSSHHHHHHHHHHH
T ss_pred CCccccccchhHHHHHHHHh
Confidence 78999999999988888764
No 46
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=40.14 E-value=56 Score=24.97 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC-C-ccchHHHHHHHHHHHcCCc
Q 030865 124 IGEELIKTCIALNITEISSYDRNG-S-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg-~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|+.+++.+.+.|..+|.++--.. . ....|...|.+++.++|+.
T Consensus 118 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 163 (292)
T 3k4h_A 118 AAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIV 163 (292)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCC
Confidence 344555555667999988343221 1 2347999999999999974
No 47
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=39.69 E-value=36 Score=24.91 Aligned_cols=33 Identities=6% Similarity=0.178 Sum_probs=26.0
Q ss_pred HHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 129 IKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 129 Akra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
++.|.++|+..++ ++-++. -..+++.++++|+.
T Consensus 86 ~~~~~~~g~~~i~-~~~~~~-----~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 86 AKEAVEAGFKKLW-FQPGAE-----SEEIRRFLEKAGVE 118 (138)
T ss_dssp HHHHHHTTCCEEE-ECTTSC-----CHHHHHHHHHHTCE
T ss_pred HHHHHHcCCCEEE-EcCccH-----HHHHHHHHHHCCCE
Confidence 3557789999988 888764 47888889999974
No 48
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=39.18 E-value=59 Score=24.72 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC-CC-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN-GS-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg-g~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++. +++.+.+.|..+|.++.-. +. ....|.+.|.+++.++|+-
T Consensus 122 d~~~~~~~----a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 171 (296)
T 3brq_A 122 DHKQTSFN----AVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIA 171 (296)
T ss_dssp CHHHHHHH----HHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCC
T ss_pred chHHHHHH----HHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCC
Confidence 45555444 4555555699988834321 12 2357999999999999974
No 49
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=38.50 E-value=43 Score=25.83 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC-CC-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN-GS-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg-g~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++.+++.|.+ .|..+|.++.-. +. ....|...|.+++.++|+.
T Consensus 108 D~~~~g~~a~~~L~~----~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~ 157 (287)
T 3bbl_A 108 DGTAGTRQAVEYLIG----RGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLP 157 (287)
T ss_dssp CHHHHHHHHHHHHHH----HTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHH----CCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCC
Confidence 355666666665554 588888733221 12 2357999999999999974
No 50
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=38.33 E-value=55 Score=25.05 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCC
Q 030865 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGF 166 (170)
Q Consensus 118 ~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl 166 (170)
.++|+.+|+.||++ |+.=|. ||.. |-+.|.++++.++|-
T Consensus 19 ~~~A~~lg~~La~~----g~~lV~----Ggg~--GiM~aa~~gAl~~gG 57 (171)
T 1weh_A 19 YARWVRYGEVLAEE----GFGLAC----GGYQ--GGMEALARGVKAKGG 57 (171)
T ss_dssp HHHHHHHHHHHHHT----TEEEEE----CCSS--THHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC----CCEEEe----CChh--hHHHHHHHHHHHcCC
Confidence 46777777777764 776666 6653 999999999999873
No 51
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=37.74 E-value=65 Score=24.91 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCCC--CccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRNG--SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg--~~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++.. ++.+.+.|..+|. |=.+. .....|.+.|.+++.++|+.
T Consensus 109 D~~~~~~~a----~~~L~~~G~~~I~-~i~~~~~~~~~~R~~Gf~~al~~~g~~ 157 (289)
T 3k9c_A 109 DDVAGITLA----VDHLTELGHRNIA-HIDGADAPGGADRRAGFLAAMDRHGLS 157 (289)
T ss_dssp CHHHHHHHH----HHHHHHTTCCSEE-EECCTTSTTHHHHHHHHHHHHHHTTCG
T ss_pred ChHHHHHHH----HHHHHHCCCCcEE-EEeCCCCccHHHHHHHHHHHHHHCCCC
Confidence 354555544 4555557999888 43332 33467999999999999985
No 52
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=37.18 E-value=50 Score=25.82 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcc-chHHHHHHHHHHHcCCc
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSRR-GERMQAFEIPISRHGFL 167 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~Y-hGrVkAladaaRe~Gl~ 167 (170)
..+..+++-+.+.|.++|..+.-+ ..| ..+.+.|.+++.++|+-
T Consensus 121 ~~~~~~~~~l~~~g~~~ia~i~~~-~~~~~~~~~~~~~~l~~~g~~ 165 (362)
T 3snr_A 121 IMGKVLYEHMKKNNVKTVGYIGYS-DSYGDLWFNDLKKQGEAMGLK 165 (362)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEES-SHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhcCCCEEEEEecC-chHHHHHHHHHHHHHHHcCCE
Confidence 344555566667899998755332 334 57899999999999974
No 53
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=36.97 E-value=58 Score=24.89 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCEEEEecCCC-C-ccchHHHHHHHHHHHcCCc
Q 030865 125 GEELIKTCIALNITEISSYDRNG-S-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 125 G~~lAkra~e~gI~~Vv~fDRgg-~-~YhGrVkAladaaRe~Gl~ 167 (170)
|+.+++.+.+.|..+|.++--.. . ....|...|.+++.++|+.
T Consensus 115 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~ 159 (289)
T 3g85_A 115 GEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIK 159 (289)
T ss_dssp HHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCC
Confidence 44455555567988887332211 1 2356999999999999975
No 54
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=36.89 E-value=51 Score=25.55 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC---CccchHHHHHHHHHHHcCCc
Q 030865 124 IGEELIKTCIALNITEISSYDRNG---SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg---~~YhGrVkAladaaRe~Gl~ 167 (170)
.|+.+++.+.+.|..+|. |=.+. .....|...|.+++.++|+.
T Consensus 118 ~g~~a~~~L~~~G~~~I~-~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 163 (301)
T 3miz_A 118 GARDLTRYLLERGHRRIG-YIRLNPILLGAELRLDAFRRTTSEFGLT 163 (301)
T ss_dssp HHHHHHHHHHTTTCCSEE-EEECCTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCeEE-EEecCccchhHHHHHHHHHHHHHHcCCC
Confidence 345555556668999988 43332 22357999999999999974
No 55
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=36.71 E-value=65 Score=30.19 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCEE---EEecCCCCccchH---------------HHHHHHHHHHcCCcc
Q 030865 115 CSTIEAAERIGEELIKTCIALNITEI---SSYDRNGSRRGER---------------MQAFEIPISRHGFLQ 168 (170)
Q Consensus 115 ~~n~~AA~~VG~~lAkra~e~gI~~V---v~fDRgg~~YhGr---------------VkAladaaRe~Gl~~ 168 (170)
+-|.+.++.+|+.+|+-+.+.||+-. + .|-.-....|| ..|+.+++.+.|++.
T Consensus 90 t~d~~l~~~~g~~~a~E~~a~Gi~~~~aP~-vdi~r~p~~gR~~e~fgeDP~l~~~~a~a~v~G~q~~gV~a 160 (721)
T 2x41_A 90 TWNRELLEEVGKAMGEEVREYGVDVLLAPA-MNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQGVGA 160 (721)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEECCCB-CCCCCSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHTTTCBC
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCEEeece-ECCCCCCCCCcccccCCCCHHHHHHHHHHHHHHhhhCCeEE
Confidence 45889999999999999999999743 2 23221222222 578999999999864
No 56
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=36.62 E-value=50 Score=25.49 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCCC--C-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRNG--S-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg--~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++.+++.| .+.|..+|.++ .+. . ....|...|.+++.++|+.
T Consensus 111 D~~~~g~~a~~~L----~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~al~~~g~~ 160 (290)
T 2rgy_A 111 DHRRGGELAAATL----IEHGHRKLAVI-SGPFTASDNVERLDGFFDELARHGIA 160 (290)
T ss_dssp CHHHHHHHHHHHH----HHTTCCSEEEE-ESCTTCHHHHHHHHHHHHHHHTTTCC
T ss_pred CcHHHHHHHHHHH----HHCCCceEEEE-eCCCCCccHHHHHHHHHHHHHHcCCC
Confidence 4556655555554 45688888733 332 1 2357999999999999974
No 57
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=35.58 E-value=64 Score=25.55 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCC
Q 030865 117 TIEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGF 166 (170)
Q Consensus 117 n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl 166 (170)
-.++|+.+|+.||+ .|+. || + | -..|-+.|.++++.++|-
T Consensus 43 ~~~~A~~lg~~LA~----~G~~-vV-s--G--g~~GiM~aa~~gAl~~GG 82 (195)
T 1rcu_A 43 LRDICLELGRTLAK----KGYL-VF-N--G--GRDGVMELVSQGVREAGG 82 (195)
T ss_dssp GHHHHHHHHHHHHH----TTCE-EE-E--C--CSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH----CCCE-EE-e--C--CHHHHHHHHHHHHHHcCC
Confidence 44788888888887 4775 55 3 5 467999999999999874
No 58
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=35.51 E-value=45 Score=24.40 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 126 EELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 126 ~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
..+++.|.++|+..++ +.-|.. -..+++.++++|+.
T Consensus 91 ~~vv~~~~~~gi~~i~-~~~g~~-----~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 91 MEYVEQAIKKGAKVVW-FQYNTY-----NREASKKADEAGLI 126 (144)
T ss_dssp HHHHHHHHHHTCSEEE-ECTTCC-----CHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCCEEE-ECCCch-----HHHHHHHHHHcCCE
Confidence 3345678889999887 876644 47788889999974
No 59
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=35.33 E-value=57 Score=25.86 Aligned_cols=48 Identities=6% Similarity=-0.069 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC-CC-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN-GS-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg-g~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++. +++.+.+.|..+|.++.-. +. ....|...|.+++.++|+.
T Consensus 155 D~~~~~~~----a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 204 (330)
T 3ctp_A 155 DNYNGGRM----AFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLE 204 (330)
T ss_dssp CHHHHHHH----HHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHH----HHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCC
Confidence 34455444 4555556799988733221 12 2357999999999999974
No 60
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=35.25 E-value=38 Score=24.91 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=24.8
Q ss_pred HHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 130 KTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 130 kra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
+.|.++|+..++ ++-+.. -..+++.++++|+.
T Consensus 88 ~~~~~~g~~~i~-i~~~~~-----~~~l~~~a~~~Gi~ 119 (145)
T 2duw_A 88 QEAIAIGAKTLW-LQLGVI-----NEQAAVLAREAGLS 119 (145)
T ss_dssp HHHHHHTCCEEE-CCTTCC-----CHHHHHHHHTTTCE
T ss_pred HHHHHcCCCEEE-EcCChH-----HHHHHHHHHHcCCE
Confidence 446678999988 886644 57888889999974
No 61
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=34.21 E-value=67 Score=24.98 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCEEEEecCC-CC-ccchHHHHHHHHHHHcCCcc
Q 030865 124 IGEELIKTCIALNITEISSYDRN-GS-RRGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRg-g~-~YhGrVkAladaaRe~Gl~~ 168 (170)
.|+.+++.+.+.|..+|.++.-. .. ....|...|.+++.++|+..
T Consensus 131 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 177 (305)
T 3huu_A 131 AAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISN 177 (305)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCc
Confidence 44555666667799988734221 11 23579999999999999754
No 62
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=33.74 E-value=50 Score=24.01 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 127 ELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 127 ~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
.+.+.|.++|+..|+ |--|... ..+++.+|++||.
T Consensus 73 ~~v~e~~~~g~k~v~-~~~G~~~-----~e~~~~a~~~Gir 107 (122)
T 3ff4_A 73 SEYNYILSLKPKRVI-FNPGTEN-----EELEEILSENGIE 107 (122)
T ss_dssp GGHHHHHHHCCSEEE-ECTTCCC-----HHHHHHHHHTTCE
T ss_pred HHHHHHHhcCCCEEE-ECCCCCh-----HHHHHHHHHcCCe
Confidence 345677888999766 8766432 5888999999974
No 63
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=33.72 E-value=51 Score=25.43 Aligned_cols=42 Identities=12% Similarity=-0.107 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC--C-ccchHHHHHHHHHHHcCC
Q 030865 124 IGEELIKTCIALNITEISSYDRNG--S-RRGERMQAFEIPISRHGF 166 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg--~-~YhGrVkAladaaRe~Gl 166 (170)
.|..+++.+.+.|..+|.++ .+. . ....|...|.+++.++|+
T Consensus 125 ~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~~l~~~g~ 169 (293)
T 2iks_A 125 DAEMLAEELRKFPAETVLYL-GALPELSVSFLREQGFRTAWKDDPR 169 (293)
T ss_dssp HHHHHHHHHHTSCCSSEEEE-EECTTSHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCEEEEE-ecCcccccHHHHHHHHHHHHHHcCC
Confidence 34455666667798888733 222 2 235799999999999996
No 64
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=33.41 E-value=63 Score=24.96 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCCCC----ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRNGS----RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~----~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++.+++. +.+.|..+|. |=.+.. ....|...|.+++.++|+.
T Consensus 116 D~~~~g~~a~~~----L~~~G~~~I~-~i~~~~~~~~~~~~R~~Gf~~al~~~g~~ 166 (289)
T 2fep_A 116 DYEQAIYDAVKL----LVDKGHTDIA-FVSGPMAEPINRSKKLQGYKRALEEANLP 166 (289)
T ss_dssp CHHHHHHHHHHH----HHHTTCSSEE-EEESCTTSHHHHTTHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHH----HHHCCCCeEE-EEeCCccccccHHHHHHHHHHHHHHcCCC
Confidence 455555555544 4556989888 433322 1357999999999999974
No 65
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=33.30 E-value=58 Score=24.88 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHHHHHHhCCC--CEEEEecC---C--C-CccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNI--TEISSYDR---N--G-SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI--~~Vv~fDR---g--g-~~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++ .+++.+.+.|. .+|.++-- | + .....|.+.|.+++.++|+-
T Consensus 116 D~~~~g~----~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~ 171 (304)
T 3gbv_A 116 NSHQSGY----FAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPA 171 (304)
T ss_dssp CHHHHHH----HHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred ChHHHHH----HHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCC
Confidence 3545544 45555555666 77773420 2 1 22367999999999999974
No 66
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=32.42 E-value=78 Score=25.16 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCCC--C-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRNG--S-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg--~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++.+++.| .+.|..+|. |=.+. . ....|...|.+++.++|+.
T Consensus 160 D~~~~~~~a~~~L----~~~G~~~I~-~i~g~~~~~~~~~R~~Gf~~al~~~g~~ 209 (340)
T 1qpz_A 160 NAFEGGYMAGRYL----IERGHREIG-VIPGPLERNTGAGRLAGFMKAMEEAMIK 209 (340)
T ss_dssp CHHHHHHHHHHHH----HHHTCCCEE-EECCCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHH----HHCCCCEEE-EEeCCCccccHHHHHHHHHHHHHHCCCC
Confidence 4555555555544 455999988 43332 1 2357999999999999974
No 67
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=32.06 E-value=69 Score=25.72 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC---Cc-cchHHHHHHHHHHHcCCcc
Q 030865 123 RIGEELIKTCIALNITEISSYDRNG---SR-RGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg---~~-YhGrVkAladaaRe~Gl~~ 168 (170)
.-|+.+++.+.++|..+|. |=-+. .. ...|...|.++++++|+..
T Consensus 173 ~~~~~a~~~L~~~G~r~I~-~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 221 (355)
T 3e3m_A 173 RAAYDMTNALLARGFRKIV-FLGEKDDDWTRGAARRAGFKRAMREAGLNP 221 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEE-EEEESSCTTSHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHCCCCeEE-EEccCcccChhHHHHHHHHHHHHHHCCcCC
Confidence 3445556666678999887 43321 22 3579999999999999854
No 68
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=31.80 E-value=41 Score=22.10 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC
Q 030865 123 RIGEELIKTCIALNITEISSYDRNG 147 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg 147 (170)
.+|..+++.+.+.|..+|+.+||+.
T Consensus 15 ~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 15 KIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCH
Confidence 5899999999999966676699973
No 69
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=31.52 E-value=79 Score=24.26 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC-CC-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN-GS-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg-g~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++.+ ++.+.+.|..+|.++.-. +. ....|...|.+++.++|+.
T Consensus 107 D~~~~g~~a----~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 156 (285)
T 3c3k_A 107 DDVAASEYV----VDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLD 156 (285)
T ss_dssp CHHHHHHHH----HHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred ChHHHHHHH----HHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCC
Confidence 355555544 455555698888733221 12 2357999999999999974
No 70
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=30.79 E-value=71 Score=25.67 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCEEEEecCCC--C-ccchHHHHHHHHHHHcCC
Q 030865 117 TIEAAERIGEELIKTCIALNITEISSYDRNG--S-RRGERMQAFEIPISRHGF 166 (170)
Q Consensus 117 n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg--~-~YhGrVkAladaaRe~Gl 166 (170)
|.++++.++ +.+.+.|..+|. |=.+. . ....|...|.+++.++|+
T Consensus 168 ~~~~~~~a~----~~L~~~G~~~I~-~i~~~~~~~~~~~R~~Gf~~al~~~g~ 215 (348)
T 3bil_A 168 PQPGIAAAV----ELLAHNNALPIG-YLSGPMDTSTGRERLEDFKAACANSKI 215 (348)
T ss_dssp CHHHHHHHH----HHHHHTTCCSEE-EECCCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHH----HHHHHCCCCeEE-EEeCCCCCccHHHHHHHHHHHHHHcCc
Confidence 445555544 445556999888 43332 1 235799999999999997
No 71
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=30.31 E-value=1e+02 Score=24.41 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCEEEEecCCC--C-ccchHHHHHHHHHHHcCCc
Q 030865 125 GEELIKTCIALNITEISSYDRNG--S-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 125 G~~lAkra~e~gI~~Vv~fDRgg--~-~YhGrVkAladaaRe~Gl~ 167 (170)
|+.+++.+.+.|..+|. |=.+. . ....|...|.+++.++|+.
T Consensus 168 ~~~a~~~L~~~G~~~I~-~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 212 (332)
T 2o20_A 168 AYQSTKKLIDSGNKKIA-YIMGSLKDVENTERMVGYQEALLEANIE 212 (332)
T ss_dssp HHHHHHHHHHTTCSSEE-EECSCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCeEE-EEeCCcccccHHHHHHHHHHHHHHcCCC
Confidence 44455555667999988 43332 1 2357999999999999974
No 72
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=30.06 E-value=76 Score=25.64 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCC
Q 030865 121 AERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGF 166 (170)
Q Consensus 121 A~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl 166 (170)
+.=+|+.+|+++.+.|-.-++ .||+ ..+.+.+++.+++.|-
T Consensus 16 s~GIG~aiA~~la~~Ga~Vv~-~~~~----~~~~~~~~~~i~~~g~ 56 (254)
T 4fn4_A 16 GSGIGRAIAKKFALNDSIVVA-VELL----EDRLNQIVQELRGMGK 56 (254)
T ss_dssp TSHHHHHHHHHHHHTTCEEEE-EESC----HHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCEEEE-EECC----HHHHHHHHHHHHhcCC
Confidence 345899999999999987666 8986 3567788888877763
No 73
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=30.00 E-value=75 Score=25.13 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcc-chHHHHHHHHHHHcCCc
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSRR-GERMQAFEIPISRHGFL 167 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~Y-hGrVkAladaaRe~Gl~ 167 (170)
..+..+++-+.+.|.++|..+.-+ +.| ..+.+.|.+++.++|+-
T Consensus 137 ~~~~~~~~~l~~~g~~~ia~i~~~-~~~~~~~~~~~~~~l~~~G~~ 181 (375)
T 4evq_A 137 QIGRATGDAMIKAGLKKAVTVTWK-YAAGEEMVSGFKKSFTAGKGE 181 (375)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEES-SHHHHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHcCCcEEEEEecC-chHHHHHHHHHHHHHHHcCCe
Confidence 455666777777899988755422 344 46899999999999974
No 74
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=29.92 E-value=89 Score=25.88 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCC-c---cchHHHHHHHHHHHcCCc
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGS-R---RGERMQAFEIPISRHGFL 167 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~-~---YhGrVkAladaaRe~Gl~ 167 (170)
+..|+.+++.+.+.|..+|.++--... . ...|...|.+++.++|+.
T Consensus 124 ~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~ 173 (412)
T 4fe7_A 124 YALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYR 173 (412)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHHHHHHHHHcCCC
Confidence 345566666677789999984432211 1 457999999999999974
No 75
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=29.31 E-value=54 Score=23.95 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=25.9
Q ss_pred HHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 128 LIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 128 lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
+++.|.++|+..++ +.-|.. -..+++.++++|+.
T Consensus 86 v~~~~~~~gi~~i~-~~~g~~-----~~~~~~~a~~~Gir 119 (140)
T 1iuk_A 86 HLPEVLALRPGLVW-LQSGIR-----HPEFEKALKEAGIP 119 (140)
T ss_dssp THHHHHHHCCSCEE-ECTTCC-----CHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCEEE-EcCCcC-----HHHHHHHHHHcCCE
Confidence 34677788999887 776654 27888889999974
No 76
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=28.50 E-value=1.1e+02 Score=29.45 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=38.2
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCEEEE--ecCCCCccchH---------------HHHHHHHHHHcCCcc
Q 030865 115 CSTIEAAERIGEELIKTCIALNITEISS--YDRNGSRRGER---------------MQAFEIPISRHGFLQ 168 (170)
Q Consensus 115 ~~n~~AA~~VG~~lAkra~e~gI~~Vv~--fDRgg~~YhGr---------------VkAladaaRe~Gl~~ 168 (170)
+-|.+.++.+|+.+|+-+.+.||+-... .|-.-....|| ..|+.+++.+.|+..
T Consensus 73 t~d~~l~~~~g~~~g~E~ra~Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~gV~a 143 (845)
T 3abz_A 73 TFDRDLLETAGKLMAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGIAA 143 (845)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHTTCBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhCCeeE
Confidence 4688999999999999999999985310 12211112222 567999999999864
No 77
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=28.38 E-value=1.3e+02 Score=24.00 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 119 EAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 119 ~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
++|+.+|+.||+ .|+.=|. || -..|-+.|.++++.++|
T Consensus 28 ~~A~~lg~~LA~----~g~~lV~----GG-g~~GlM~aa~~gA~~~G 65 (216)
T 1ydh_A 28 DAAIELGNELVK----RKIDLVY----GG-GSVGLMGLISRRVYEGG 65 (216)
T ss_dssp HHHHHHHHHHHH----TTCEEEE----CC-CSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH----CCCEEEE----CC-CcccHhHHHHHHHHHcC
Confidence 577777777776 4776655 32 23499999999999987
No 78
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=28.18 E-value=72 Score=24.74 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=23.4
Q ss_pred HHHHHHhCCCCEEEEecCCCCc-cchHHHHHHHHHHHcCCc
Q 030865 128 LIKTCIALNITEISSYDRNGSR-RGERMQAFEIPISRHGFL 167 (170)
Q Consensus 128 lAkra~e~gI~~Vv~fDRgg~~-YhGrVkAladaaRe~Gl~ 167 (170)
=++...+.||.+|| |--..|. ....+ +-.+-|+++||-
T Consensus 110 Ca~aIi~agI~rVV-y~~~~~~d~~~~~-~~~~~L~~aGI~ 148 (178)
T 2w4l_A 110 CAKLIIQAGIKEVI-FMSDKYHDSDEAT-AARLLFNMAGVT 148 (178)
T ss_dssp HHHHHHHTTCCEEE-EEECTTTTSHHHH-HHHHHHHHHTCE
T ss_pred HHHHHHHHCCCEEE-EEeccCCCCcchH-HHHHHHHHCCCE
Confidence 35667789999999 5322111 12223 337889999984
No 79
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=28.16 E-value=87 Score=25.17 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC--------C-----------CCccchHHHHHHHHHHHcCCcc
Q 030865 123 RIGEELIKTCIALNITEISSYDR--------N-----------GSRRGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDR--------g-----------g~~YhGrVkAladaaRe~Gl~~ 168 (170)
.-|+.+++.+.+.|..++.++-- | ......|...|.+++.++|+..
T Consensus 175 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 239 (366)
T 3h5t_A 175 KAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDP 239 (366)
T ss_dssp HHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCC
Confidence 34555566666789998874430 1 1233579999999999999853
No 80
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=28.08 E-value=68 Score=24.42 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHHHHHhCC-CCEEEEecCC-CC-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALN-ITEISSYDRN-GS-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~g-I~~Vv~fDRg-g~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++.+++.|.++ .| ..+|.++.-. +. ....|...|.+++.++|+.
T Consensus 112 D~~~~g~~~~~~L~~~---~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 163 (289)
T 3brs_A 112 DNIQAGIRIGAVTKNL---VRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNK 163 (289)
T ss_dssp CHHHHHHHHHHHHHHH---TSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGG
T ss_pred ChHHHHHHHHHHHHHH---cCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCc
Confidence 3555555555544433 26 8888834221 22 2357999999999999863
No 81
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=28.05 E-value=95 Score=23.43 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 121 AERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 121 A~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
+.-+|..+++++.+.|.+-++ .||+ ..+...+++.+.+.|
T Consensus 23 s~gIG~~ia~~l~~~G~~V~~-~~r~----~~~~~~~~~~~~~~~ 62 (247)
T 3i1j_A 23 ARGIGAAAARAYAAHGASVVL-LGRT----EASLAEVSDQIKSAG 62 (247)
T ss_dssp TSHHHHHHHHHHHHTTCEEEE-EESC----HHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHCCCEEEE-EecC----HHHHHHHHHHHHhcC
Confidence 356899999999999986555 8987 234555666665544
No 82
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=27.90 E-value=1.1e+02 Score=23.75 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCC
Q 030865 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGF 166 (170)
Q Consensus 118 ~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl 166 (170)
.++|+.+|+.||+ .|+.=|. |--+.|-+.|.++++.++|-
T Consensus 19 ~~~A~~lg~~La~----~g~~lV~-----GGg~~GiM~aa~~gA~~~gG 58 (191)
T 1t35_A 19 KRKAAELGVYMAE----QGIGLVY-----GGSRVGLMGTIADAIMENGG 58 (191)
T ss_dssp HHHHHHHHHHHHH----TTCEEEE-----CCCCSHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHH----CCCEEEE-----CCCcccHHHHHHHHHHHcCC
Confidence 3567777777666 4776555 23466999999999999873
No 83
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=27.89 E-value=1e+02 Score=25.05 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCC
Q 030865 123 RIGEELIKTCIALNITEISSYDRN 146 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRg 146 (170)
.+|..+|..+.+.|..+|+.|||.
T Consensus 34 ~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 34 EAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp HHHHHHHHHHHHHSCCEEEEECSS
T ss_pred HHHHHHHHHHHHCCCCeEEEEcCC
Confidence 588999999999998677769996
No 84
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=27.81 E-value=77 Score=25.04 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcc-chHHHHHHHHHHHcCCc
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSRR-GERMQAFEIPISRHGFL 167 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~Y-hGrVkAladaaRe~Gl~ 167 (170)
..+..+++-+.+.|.++|..+.- ...| .++.+.|.+++.+.|+-
T Consensus 145 ~~~~~~~~~l~~~g~~~ia~i~~-~~~~~~~~~~~~~~~l~~~g~~ 189 (386)
T 3sg0_A 145 IMAEAIGKYIAKTGAKKVGYIGF-SDAYGEGYYKVLAAAAPKLGFE 189 (386)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEE-SSHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHhcCCCEEEEEec-CchHHHHHHHHHHHHHHHcCCE
Confidence 34455556666789998875532 2444 57899999999999974
No 85
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A*
Probab=27.74 E-value=74 Score=27.38 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE-------EEecCCC----Cccc------h-HHHHHHHHHHHcCCcc
Q 030865 119 EAAERIGEELIKTCIALNITEI-------SSYDRNG----SRRG------E-RMQAFEIPISRHGFLQ 168 (170)
Q Consensus 119 ~AA~~VG~~lAkra~e~gI~~V-------v~fDRgg----~~Yh------G-rVkAladaaRe~Gl~~ 168 (170)
+.++.+|.++|+-+.+.||+-. . ++|+. ..|+ + -..|+.+++.++|+.+
T Consensus 107 ~la~~~g~~~a~El~a~Gi~~~~aPv~Dv~-~gr~~~iG~rsfgeDP~lv~~~a~A~v~Glq~~GV~a 173 (348)
T 4g6c_A 107 KVATAVGYILAAELRACGIDMSFTPVLDLD-YGHSKVIGDRAFHRDPRVVTLLAKSLNHGLSLAGMAN 173 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEECCCBCCCC-CSCCTTTGGGSCCSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEeecCccCCC-CCCCCCccCcCCCCCHHHHHHHHHHHHHHHHhcCCce
Confidence 6899999999999999999842 2 23432 1232 2 3578999999999875
No 86
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=27.54 E-value=25 Score=27.79 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC-CccchHHHHHHHHHHHcCCcc
Q 030865 124 IGEELIKTCIALNITEISSYDRNG-SRRGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg-~~YhGrVkAladaaRe~Gl~~ 168 (170)
.|+..++.|.+.|++-|. .+-.- -.+.+.+..+.+.+++.|+.+
T Consensus 70 tGei~~~~~~~~Gad~Vl-l~~ser~l~~~e~~~~~~~a~~~Gl~~ 114 (219)
T 2h6r_A 70 TGHILAEAIKDCGCKGTL-INHSEKRMLLADIEAVINKCKNLGLET 114 (219)
T ss_dssp TTCCCHHHHHHHTCCEEE-ESBTTBCCBHHHHHHHHHHHHHHTCEE
T ss_pred cCchHHHHHHHcCCCEEE-ECCccccCCHHHHHHHHHHHHHCCCeE
Confidence 466667899999999999 74321 356778999999999999854
No 87
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=27.32 E-value=82 Score=24.87 Aligned_cols=43 Identities=7% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCC----ccchHHHHHHHHHHHcCCc
Q 030865 124 IGEELIKTCIALNITEISSYDRNGS----RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg~----~YhGrVkAladaaRe~Gl~ 167 (170)
.|+.+++.+.+.|..+|. |=.+.. ....|...|.+++.++|+.
T Consensus 164 ~~~~a~~~L~~~G~~~I~-~i~~~~~~~~~~~~R~~Gf~~al~~~g~~ 210 (332)
T 2hsg_A 164 AAFDAVQSLIDSGHKNIA-FVSGTLEEPINHAKKVKGYKRALTESGLP 210 (332)
T ss_dssp HHHHHHHHHHTTTCSCEE-EEESCTTSHHHHTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHCCCCEEE-EEeCCcccCccHHHHHHHHHHHHHHcCCC
Confidence 345555666667999988 433322 1357999999999999974
No 88
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=27.14 E-value=84 Score=25.72 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCC
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGF 166 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl 166 (170)
.+|..+|..+.+.|..+|+.|||+... -.+....++.+.+.|+
T Consensus 34 ~mG~~lA~~L~~~G~~~V~~~dr~~~~-~~~~~~~~~~~~~~g~ 76 (317)
T 4ezb_A 34 EAAQSIAGGLGGRNAARLAAYDLRFND-PAASGALRARAAELGV 76 (317)
T ss_dssp HHHHHHHHHHHTTTCSEEEEECGGGGC-TTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCCcc-ccchHHHHHHHHHCCC
Confidence 589999999999994456669997421 1245555666666665
No 89
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=26.89 E-value=89 Score=24.91 Aligned_cols=44 Identities=18% Similarity=0.058 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC--CccchHHHHHHHHHHHcCC
Q 030865 123 RIGEELIKTCIALNITEISSYDRNG--SRRGERMQAFEIPISRHGF 166 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg--~~YhGrVkAladaaRe~Gl 166 (170)
..|+.+++.+.+.|..+|.++.-.. .....|...|.+++.++|+
T Consensus 160 ~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 205 (333)
T 3jvd_A 160 AGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGA 205 (333)
T ss_dssp HHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCC
Confidence 3455666667778999988443221 2246799999999999997
No 90
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=26.70 E-value=62 Score=25.80 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCCC----CccchHHHHHHHHHHHcCCcc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRNG----SRRGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg----~~YhGrVkAladaaRe~Gl~~ 168 (170)
.|.++++..+ +.+.+.|..++. |=-+. .....|...|.+++.++|+..
T Consensus 168 D~~~~~~~a~----~~L~~~G~~~I~-~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 219 (344)
T 3kjx_A 168 SHRRAGREMA----QAILKAGYRRIG-FMGTKMPLDYRARKRFEGFTEVLGKNGVEI 219 (344)
T ss_dssp CHHHHHHHHH----HHHHHHTCCSCC-EEESSTTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHH----HHHHHCCCCeEE-EEecCcccCccHHHHHHHHHHHHHHcCCCC
Confidence 3555555544 445556888877 43222 223579999999999999753
No 91
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=26.65 E-value=77 Score=24.96 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCCcc-chHHHHHHHHHHHcCCc
Q 030865 125 GEELIKTCIALNITEISSYDRNGSRR-GERMQAFEIPISRHGFL 167 (170)
Q Consensus 125 G~~lAkra~e~gI~~Vv~fDRgg~~Y-hGrVkAladaaRe~Gl~ 167 (170)
+..+++-+.+.|.++|..+. ....| ..+.+.|.+++.+.|+.
T Consensus 127 ~~~~~~~l~~~g~~~ia~i~-~~~~~~~~~~~~~~~~l~~~g~~ 169 (358)
T 3hut_A 127 GPNNAAWMIGDGFTSVAVIG-VTTDWGLSSAQAFRKAFELRGGA 169 (358)
T ss_dssp HHHHHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCCEEEEEe-cCcHHHHHHHHHHHHHHHHcCCE
Confidence 44455556666999887554 22344 47899999999999974
No 92
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=26.49 E-value=43 Score=28.87 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=37.7
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCEEEE--ec-----CCC---C-ccc-------hHHHHHHHHHHHcCCcc
Q 030865 115 CSTIEAAERIGEELIKTCIALNITEISS--YD-----RNG---S-RRG-------ERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 115 ~~n~~AA~~VG~~lAkra~e~gI~~Vv~--fD-----Rgg---~-~Yh-------GrVkAladaaRe~Gl~~ 168 (170)
+.|.+.++.+|..+|+-+.+.||+-... .| ++| . .|+ --..|+.+++.++|+.+
T Consensus 104 t~d~~l~~~~g~~~a~E~ra~Gi~~~~aPv~Dv~r~p~~~rig~RsfgeDP~lv~~~a~a~v~Glq~~gV~a 175 (351)
T 3tev_A 104 ADDQQLTEDVNAALARQLRSVGINWNFTPVLDINVNPANPVIGDRAYGSDAARVTRHGRAALAGHTREGVAP 175 (351)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCCSSGGGSSCSSHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEeccceeEeccCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3578999999999999999999984210 12 221 1 121 13568899999999864
No 93
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=26.19 E-value=62 Score=22.61 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC
Q 030865 124 IGEELIKTCIALNITEISSYDRNG 147 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg 147 (170)
.|..+|..+...|++-++ ||++.
T Consensus 13 aGL~aA~~La~~G~~V~v-~Ek~~ 35 (336)
T 3kkj_A 13 AGLSAAQALTAAGHQVHL-FDKSR 35 (336)
T ss_dssp HHHHHHHHHHHTTCCEEE-ECSSS
T ss_pred HHHHHHHHHHHCCCCEEE-EECCC
Confidence 477777788889999888 99863
No 94
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=26.15 E-value=70 Score=27.43 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCE-------EEEec---CCCCccc------h-HHHHHHHHHHHcCCcc
Q 030865 118 IEAAERIGEELIKTCIALNITE-------ISSYD---RNGSRRG------E-RMQAFEIPISRHGFLQ 168 (170)
Q Consensus 118 ~~AA~~VG~~lAkra~e~gI~~-------Vv~fD---Rgg~~Yh------G-rVkAladaaRe~Gl~~ 168 (170)
.+.++.+|.++|+-+.+.||+- |. .| +|+..|+ + -..|+.+++.+.|+.+
T Consensus 91 ~~la~~~g~~~a~E~ra~Gi~~~~aPv~Dv~-~~~~~ig~rsfgeDP~lv~~~a~a~v~Glq~~gV~a 157 (340)
T 2oxn_A 91 VELAEQGGWLMAAELIAHDVDLSFAPVLDMG-FACKAIGNRAFGEDVQTVLKHSSAFLRGMKAVGMAT 157 (340)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEECCCBCCCC-SCSTTTGGGSSCSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEecCccCCC-CCCCcCcCCCCCCCHHHHHHHHHHHHHHHHHCCcee
Confidence 7899999999999999999984 22 23 1111222 2 2578999999999864
No 95
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=26.04 E-value=33 Score=30.34 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCccchH
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSRRGER 153 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGr 153 (170)
..|..+|+-+.+.|.++|+.+||.|-.|.+|
T Consensus 202 aAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R 232 (388)
T 1vl6_A 202 AAGYNIVKFLLDLGVKNVVAVDRKGILNEND 232 (388)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEETTEECCTTS
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCCcccCCC
Confidence 4567777778888998888899998777766
No 96
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=25.86 E-value=58 Score=27.76 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC
Q 030865 123 RIGEELIKTCIALNITEISSYDRNG 147 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg 147 (170)
.+|..+|++++..|.++|++|||..
T Consensus 174 ~IG~~vA~~l~~~G~~~V~~~d~~~ 198 (364)
T 2j6i_A 174 RIGYRVLERLVPFNPKELLYYDYQA 198 (364)
T ss_dssp HHHHHHHHHHGGGCCSEEEEECSSC
T ss_pred HHHHHHHHHHHhCCCcEEEEECCCc
Confidence 5899999999999998566699975
No 97
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=25.86 E-value=1.1e+02 Score=23.14 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHc
Q 030865 121 AERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRH 164 (170)
Q Consensus 121 A~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~ 164 (170)
+--+|..+++++.+.|.+-++ .||+. .+...+++.+++.
T Consensus 22 sggiG~~la~~l~~~G~~V~~-~~r~~----~~~~~~~~~l~~~ 60 (260)
T 3awd_A 22 AQNIGLACVTALAEAGARVII-ADLDE----AMATKAVEDLRME 60 (260)
T ss_dssp TSHHHHHHHHHHHHTTCEEEE-EESCH----HHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHCCCEEEE-EeCCH----HHHHHHHHHHHhc
Confidence 346899999999999976445 89873 2334444444443
No 98
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=25.82 E-value=1.6e+02 Score=23.30 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 118 ~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.++|+.+|+.||++ |+.=|. | --+.|-+.|+++++.++|
T Consensus 39 ~~~A~~lg~~La~~----g~~lV~----G-GG~~GlM~a~~~gA~~~G 77 (199)
T 3qua_A 39 LELAAEVGSSIAAR----GWTLVS----G-GGNVSAMGAVAQAARAKG 77 (199)
T ss_dssp HHHHHHHHHHHHHT----TCEEEE----C-CBCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC----CCEEEE----C-CCccCHHHHHHHHHHHcC
Confidence 36777888777765 665444 2 246699999999999986
No 99
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=25.71 E-value=1.1e+02 Score=23.49 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.-+|..+++++.+.|.+-++ .||+. .+.+.+++.+++.|
T Consensus 17 ~gIG~aia~~l~~~G~~V~~-~~r~~----~~~~~~~~~l~~~~ 55 (247)
T 2jah_A 17 SGIGEATARALAAEGAAVAI-AARRV----EKLRALGDELTAAG 55 (247)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EESCH----HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEE-EECCH----HHHHHHHHHHHhcC
Confidence 35899999999999986555 88862 34555555555443
No 100
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=25.55 E-value=1e+02 Score=24.31 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.-+|..+|+++.+.|..-++ .||+ ..+...+++.+.+.|
T Consensus 14 ~GIG~aia~~la~~G~~V~~-~~r~----~~~~~~~~~~l~~~~ 52 (264)
T 3tfo_A 14 GGIGEGIARELGVAGAKILL-GARR----QARIEAIATEIRDAG 52 (264)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EESS----HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCEEEE-EECC----HHHHHHHHHHHHhcC
Confidence 46899999999999987555 8886 234556666655544
No 101
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=25.53 E-value=1.4e+02 Score=23.39 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 118 IEAAERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 118 ~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.++|+.+|+.||+ .|+.=|. | --+.|-+.|+++++.++|
T Consensus 30 ~~~A~~lg~~la~----~g~~lv~----G-GG~~GlM~a~~~ga~~~G 68 (189)
T 3sbx_A 30 LELAGAVGAAIAA----RGWTLVW----G-GGHVSAMGAVSSAARAHG 68 (189)
T ss_dssp HHHHHHHHHHHHH----TTCEEEE----C-CBCSHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH----CCCEEEE----C-CCccCHHHHHHHHHHHcC
Confidence 3678888888885 4765444 2 235799999999999986
No 102
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=25.39 E-value=78 Score=27.67 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCC--c---cchHHHHHHHHHHHcCCc
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGS--R---RGERMQAFEIPISRHGFL 167 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~--~---YhGrVkAladaaRe~Gl~ 167 (170)
.=|+++++.+++.|.+++. |=.|.. . ..-|.+.+.+++.|+||.
T Consensus 142 ~Ggy~A~~~Li~~Ghk~Ia-~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~ 190 (371)
T 3qi7_A 142 ERGKVLAERSKEMGAKAFI-HYASTDDLKDVNIAKRLEMIKETCKNIGLP 190 (371)
T ss_dssp HHHHHHHHHHHHTTCSCEE-EEEETTGGGSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCCEEE-EEeccccccchhHHHHHHHHHHHHHHcCCC
Confidence 3466778888999999987 544422 2 233999999999999984
No 103
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=25.32 E-value=99 Score=24.34 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.-+|..+|+++.+.|.+-++ .||+ ..+...+++.+++.|
T Consensus 34 ~GIG~aia~~la~~G~~V~~-~~r~----~~~~~~~~~~l~~~~ 72 (279)
T 3sju_A 34 SGIGLAVARTLAARGIAVYG-CARD----AKNVSAAVDGLRAAG 72 (279)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EESC----HHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHCCCEEEE-EeCC----HHHHHHHHHHHHhcC
Confidence 45899999999999987555 8886 345566666665544
No 104
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.09 E-value=93 Score=23.64 Aligned_cols=48 Identities=2% Similarity=0.006 Sum_probs=30.7
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCCC--C-ccchHHHHHHHHHHHc-CC
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRNG--S-RRGERMQAFEIPISRH-GF 166 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg--~-~YhGrVkAladaaRe~-Gl 166 (170)
.|.++++.+++.|.+.+ .|..+|.++ .+. . ....|...|.+++.++ |+
T Consensus 106 D~~~~g~~~~~~l~~~~--~g~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~~~~ 157 (291)
T 3l49_A 106 NNYSIGAELALQMVADL--GGKGNVLVF-NGFYSVPVCKIRYDQMKYVLEAFPDV 157 (291)
T ss_dssp CHHHHHHHHHHHHHHHH--TTCEEEEEE-CSCTTSHHHHHHHHHHHHHHHTCTTE
T ss_pred ChHHHHHHHHHHHHHHc--CCCceEEEE-eCCCCCchHHHHHHHHHHHHHHCCCC
Confidence 35555555555554443 788888844 332 2 2246899999999999 55
No 105
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.98 E-value=1.2e+02 Score=22.10 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhC-CCCEEEEecCCC
Q 030865 123 RIGEELIKTCIAL-NITEISSYDRNG 147 (170)
Q Consensus 123 ~VG~~lAkra~e~-gI~~Vv~fDRgg 147 (170)
.+|..+|+.+.+. |++-++ +|++.
T Consensus 49 ~~G~~~a~~L~~~~g~~V~v-id~~~ 73 (183)
T 3c85_A 49 RIGTGAYDELRARYGKISLG-IEIRE 73 (183)
T ss_dssp HHHHHHHHHHHHHHCSCEEE-EESCH
T ss_pred HHHHHHHHHHHhccCCeEEE-EECCH
Confidence 5899999999999 987666 99973
No 106
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=24.74 E-value=93 Score=24.16 Aligned_cols=40 Identities=10% Similarity=0.243 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 121 AERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 121 A~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
+.-+|..+++++.+.|.+-++ .||+. .+...+++.+++.|
T Consensus 41 sggIG~~la~~l~~~G~~V~~-~~r~~----~~~~~~~~~~~~~~ 80 (279)
T 1xg5_A 41 SGGIGAAVARALVQQGLKVVG-CARTV----GNIEELAAECKSAG 80 (279)
T ss_dssp TSHHHHHHHHHHHHTTCEEEE-EESCH----HHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHCCCEEEE-EECCh----HHHHHHHHHHHhcC
Confidence 446899999999999976555 89863 34555666665554
No 107
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=24.72 E-value=70 Score=24.49 Aligned_cols=43 Identities=16% Similarity=0.019 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCC-----CCEEEEecCCC---CccchHHHHHHHHHHHcCCc
Q 030865 124 IGEELIKTCIALN-----ITEISSYDRNG---SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 124 VG~~lAkra~e~g-----I~~Vv~fDRgg---~~YhGrVkAladaaRe~Gl~ 167 (170)
.|+.+++.+.+.| ..+|. |=.+. .....|...|.+++.++|+.
T Consensus 118 ~g~~a~~~l~~~g~~~~~~~~i~-~i~~~~~~~~~~~R~~gf~~~l~~~~~~ 168 (304)
T 3o1i_D 118 MGYEAGKYLAERHPKGSGKTNIA-LLLGPRTRGGTKPVTTGFYEAIKNSDIH 168 (304)
T ss_dssp HHHHHHHHHHTTSBTTTCCEEEE-EECCCC-----CHHHHHHHHTTTTBTEE
T ss_pred HHHHHHHHHHHhcccCCCCCEEE-EEECCCCcchHHHHHHHHHHHHhcCCCE
Confidence 4555556666666 77888 44432 23357999999999999874
No 108
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=24.69 E-value=95 Score=29.04 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=31.2
Q ss_pred HHHHHHhCCCCEEEEecCCCC------------------ccchHHHHHHHHHHHcCCcc
Q 030865 128 LIKTCIALNITEISSYDRNGS------------------RRGERMQAFEIPISRHGFLQ 168 (170)
Q Consensus 128 lAkra~e~gI~~Vv~fDRgg~------------------~YhGrVkAladaaRe~Gl~~ 168 (170)
+|+.|+++|++-++ .|=|=+ ++-+-+++|+|.+++.|+..
T Consensus 351 ~ad~aa~lG~e~fv-iDDGWf~~r~~d~~~lGdW~~d~~kFP~Glk~Lad~vh~~Gmkf 408 (729)
T 4fnq_A 351 IAKTEAELGIELFV-LDDGWFGKRDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGMQF 408 (729)
T ss_dssp HHHHHHHHTCCEEE-ECSCCBTTCCSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCccEEE-EcceeecCCCCCcccCCcEEEChhhcCccHHHHHHHHHHCCCEE
Confidence 57778899999999 887721 23344999999999999853
No 109
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=24.44 E-value=1.2e+02 Score=23.64 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCC------------ccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGS------------RRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~------------~YhGrVkAladaaRe~G 165 (170)
.-+|..+|+++.+.|.+-++ .||+.. ....+++.+++.+.+.|
T Consensus 21 ~gIG~aia~~la~~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (286)
T 3uve_A 21 RGQGRSHAVRLAQEGADIIA-VDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN 75 (286)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHCCCeEEE-EeccccccccccccccccCCHHHHHHHHHHHhhcC
Confidence 45899999999999988666 999732 12456666666665544
No 110
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=24.22 E-value=1.1e+02 Score=24.05 Aligned_cols=44 Identities=7% Similarity=0.008 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcc-chHHHHHHHHHHHcCCc
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSRR-GERMQAFEIPISRHGFL 167 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~Y-hGrVkAladaaRe~Gl~ 167 (170)
..+..+++-+.+.|.++|..+-- .+.| ..+.++|.+++.+.|+.
T Consensus 125 ~~~~~~~~~l~~~g~~~ia~i~~-~~~~g~~~~~~~~~~l~~~g~~ 169 (368)
T 4eyg_A 125 QSSIIIGDWAAKNGIKKVATLTS-DYAPGNDALAFFKERFTAGGGE 169 (368)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEE-SSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHcCCCEEEEEec-CchHhHHHHHHHHHHHHHcCCE
Confidence 44556666677789998864432 2334 35799999999999974
No 111
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=24.18 E-value=1.1e+02 Score=22.84 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCCC--EEEEecCCCCc
Q 030865 117 TIEAAERIGEELIKTCIALNIT--EISSYDRNGSR 149 (170)
Q Consensus 117 n~~AA~~VG~~lAkra~e~gI~--~Vv~fDRgg~~ 149 (170)
+.+.|..++....++|.+.|+. -.| .|++|+.
T Consensus 13 t~~~A~~l~~aa~~~A~~~g~~v~IaV-vD~~G~l 46 (145)
T 2a2l_A 13 TLAAAQQMAAAVEKKATEINVAVVFSV-VDRGGNT 46 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCEEEE-EETTSCE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEE-EECCCCE
Confidence 6789999999999999999865 344 7998864
No 112
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=24.15 E-value=1e+02 Score=23.04 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCCC--C-ccchHHHHHHHHHHHc-CCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRNG--S-RRGERMQAFEIPISRH-GFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg--~-~YhGrVkAladaaRe~-Gl~ 167 (170)
.|.++++.+++.|.+++.+.|..+|. |=.+. . ....|...|.+++.++ |+.
T Consensus 106 d~~~~g~~~~~~l~~~~~~~G~~~i~-~i~~~~~~~~~~~R~~gf~~~l~~~~~~~ 160 (276)
T 3ksm_A 106 DNYAAGQLAARALLATLDLSKERNIA-LLRLRAGNASTDQREQGFLDVLRKHDKIR 160 (276)
T ss_dssp CHHHHHHHHHHHHHHHSCTTSCEEEE-ECBCCTTCHHHHHHHHHHHHHHTTCTTEE
T ss_pred CHHHHHHHHHHHHHHhcCcCCCceEE-EEEcCCCchhHHHHHHHHHHHHHhCCCcE
Confidence 45566666666665554333899998 54432 1 2357999999999998 763
No 113
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=23.87 E-value=71 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCC
Q 030865 123 RIGEELIKTCIALNITEISSYDRN 146 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRg 146 (170)
.+|..+++.+.+.|.+-++ +|++
T Consensus 16 ~iG~~la~~L~~~g~~V~~-id~~ 38 (141)
T 3llv_A 16 AAGVGLVRELTAAGKKVLA-VDKS 38 (141)
T ss_dssp HHHHHHHHHHHHTTCCEEE-EESC
T ss_pred HHHHHHHHHHHHCCCeEEE-EECC
Confidence 4899999999999997777 9997
No 114
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=23.86 E-value=95 Score=25.94 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCc------cchHHHHHHHHHHHcCC
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSR------RGERMQAFEIPISRHGF 166 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~------YhGrVkAladaaRe~Gl 166 (170)
.+|..+|++++..|.+-+. |||.... ++| ...+.|.+.++-+
T Consensus 149 ~IG~~vA~~l~~~G~~V~~-~dr~~~~~~~~~~~~~-~~~l~ell~~aDi 196 (315)
T 3pp8_A 149 VLGAKVAESLQAWGFPLRC-WSRSRKSWPGVESYVG-REELRAFLNQTRV 196 (315)
T ss_dssp HHHHHHHHHHHTTTCCEEE-EESSCCCCTTCEEEES-HHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHCCCEEEE-EcCCchhhhhhhhhcc-cCCHHHHHhhCCE
Confidence 5899999999999997666 9997642 333 2566777766544
No 115
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.72 E-value=71 Score=24.49 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCCC---CccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRNG---SRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg---~~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++. +++.+. .|..+|.++ .+. .....|...|.+++.++|+.
T Consensus 106 D~~~~g~~----a~~~L~-~G~~~I~~i-~~~~~~~~~~~R~~Gf~~~l~~~g~~ 154 (277)
T 3hs3_A 106 NNTKGGKE----SIKLLS-KKIEKVLIQ-HWPLSLPTIRERIEAMTAEASKLKID 154 (277)
T ss_dssp CHHHHHHH----HHHTSC-TTCCEEEEE-ESCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHH----HHHHHH-hCCCEEEEE-eCCCcCccHHHHHHHHHHHHHHCCCC
Confidence 35455444 455555 799999844 332 22357999999999999974
No 116
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=23.70 E-value=1.1e+02 Score=23.56 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHHHHHhC--CCCEEEEecCCC-C-ccchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIAL--NITEISSYDRNG-S-RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~--gI~~Vv~fDRgg-~-~YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++.+ ++.+.+. |..+|.++ .+. . ....|..+|.+++.++|+-
T Consensus 108 d~~~~g~~~----~~~l~~~~~g~~~i~~i-~~~~~~~~~~R~~gf~~~l~~~~~~ 158 (305)
T 3g1w_A 108 NNYNAGMNA----AYKMAELLDGEGEVAVI-TLPNQLNHQERTTGFKETLEAEFPA 158 (305)
T ss_dssp CHHHHHHHH----HHHHHHHTTTCEEEEEE-ECTTCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHH----HHHHHHHhCCCcEEEEE-eCCCcccHHHHHHHHHHHHHhhCCC
Confidence 354555544 5555555 88888734 332 2 2346999999999998864
No 117
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=23.55 E-value=1.1e+02 Score=23.16 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCC--CCc-cchHHHHHHHHHHHcCCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRN--GSR-RGERMQAFEIPISRHGFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRg--g~~-YhGrVkAladaaRe~Gl~ 167 (170)
.|.++++..++.|.+... |..+|. |=.| +.. ...|...|.++++++|+.
T Consensus 104 D~~~~g~~a~~~L~~~g~--g~~~I~-~i~g~~~~~~~~~R~~Gf~~al~~~g~~ 155 (271)
T 2dri_A 104 DNVLGGKIAGDYIAKKAG--EGAKVI-ELQGIAGTSAARERGEGFQQAVAAHKFN 155 (271)
T ss_dssp CHHHHHHHHHHHHHHHHC--TTCEEE-EEECCTTCHHHHHHHHHHHHHHHHHTCE
T ss_pred ChHHHHHHHHHHHHHHcC--CCCeEE-EEECCCCCccHhHHHHHHHHHHhcCCCE
Confidence 466666666666666541 446776 4332 122 257999999999999973
No 118
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A*
Probab=23.51 E-value=65 Score=29.55 Aligned_cols=50 Identities=24% Similarity=0.257 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEE--ec-----CCC---Cc-cc------h-HHHHHHHHHHHcCCcc
Q 030865 119 EAAERIGEELIKTCIALNITEISS--YD-----RNG---SR-RG------E-RMQAFEIPISRHGFLQ 168 (170)
Q Consensus 119 ~AA~~VG~~lAkra~e~gI~~Vv~--fD-----Rgg---~~-Yh------G-rVkAladaaRe~Gl~~ 168 (170)
+.++.+|+.+|+-+.+.||+-... .| |+| ++ |+ | -..|+.+++.++|+.+
T Consensus 125 ~La~~~G~~~a~Elra~Gin~~fAPvvDv~r~P~~g~ig~rsfGEDP~lv~~~a~A~v~GlQ~~gV~a 192 (535)
T 3sql_A 125 ALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLT 192 (535)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCSSSGGGSSCSSHHHHHHHHHHHHHHHTTSSCBC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEecCeeccCCCCCCCCccccCCCCCHHHHHHHHHHHHHHHhhcccce
Confidence 578999999999999999984210 23 222 11 21 1 2578999999999864
No 119
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=23.39 E-value=68 Score=28.49 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcCC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHGF 166 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl 166 (170)
..+++.|++.+.+.||+.|+ -..++.+-.|.|++.+.++
T Consensus 21 ~~~a~~lv~~L~~~GV~~vf------g~PG~~~~~l~~al~~~~~ 59 (565)
T 2nxw_A 21 MKLAEALLRALKDRGAQAMF------GIPGDFALPFFKVAEETQI 59 (565)
T ss_dssp CBHHHHHHHHHHHTTCCCEE------ECCCGGGHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHcCCCEEE------ECCCcchHHHHHHHHhCCC
Confidence 35789999999999999999 3567788889998877664
No 120
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=23.34 E-value=1.4e+02 Score=23.17 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCc--------cchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSR--------RGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~--------YhGrVkAladaaRe~G 165 (170)
.-+|..+|+++.+.|.+-++ .||+... -......+++.+.+.|
T Consensus 20 ~gIG~a~a~~l~~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (281)
T 3s55_A 20 RGMGRSHAVALAEAGADIAI-CDRCENSDVVGYPLATADDLAETVALVEKTG 70 (281)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EECCSCCTTCSSCCCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHCCCeEEE-EeCCccccccccccccHHHHHHHHHHHHhcC
Confidence 45899999999999987666 9996321 1334555555555443
No 121
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=23.32 E-value=1.2e+02 Score=24.36 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCC---ccchHHHHHHHHHHHcCCc
Q 030865 125 GEELIKTCIALNITEISSYDRNGS---RRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 125 G~~lAkra~e~gI~~Vv~fDRgg~---~YhGrVkAladaaRe~Gl~ 167 (170)
|+.+++.+.+.|..+|. |=.|.. ....|...|.+++.++|+.
T Consensus 167 ~~~a~~~L~~~G~~~I~-~i~g~~~~~~~~~R~~Gf~~al~~~gi~ 211 (349)
T 1jye_A 167 TRLGVEHLVALGHQQIA-LLAGPLSSVSARLRLAGWHKYLTRNQIQ 211 (349)
T ss_dssp HHHHHHHHHHHTCCSEE-EEECCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCEEE-EEeCCCCCccHHHHHHHHHHHHHHcCCC
Confidence 44445555566988888 433321 2356899999999999974
No 122
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=23.14 E-value=1.4e+02 Score=23.66 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCC--------ccchHHHHHHHHHHHcC
Q 030865 121 AERIGEELIKTCIALNITEISSYDRNGS--------RRGERMQAFEIPISRHG 165 (170)
Q Consensus 121 A~~VG~~lAkra~e~gI~~Vv~fDRgg~--------~YhGrVkAladaaRe~G 165 (170)
+.-+|..+|+++.+.|.+-++ .||+.. ....++..+++.+.+.|
T Consensus 37 s~GIG~aia~~la~~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (299)
T 3t7c_A 37 ARGQGRSHAITLAREGADIIA-IDVCKQLDGVKLPMSTPDDLAETVRQVEALG 88 (299)
T ss_dssp TSHHHHHHHHHHHHTTCEEEE-EECCSCCTTCCSCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCEEEE-EecccccccccccccCHHHHHHHHHHHHhcC
Confidence 346899999999999988777 898732 12445566666555544
No 123
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=22.96 E-value=22 Score=24.83 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.1
Q ss_pred hccccccccCCCC
Q 030865 10 LQFNACDFFGTKA 22 (170)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (170)
+--++|+|||+..
T Consensus 18 lC~ngCGFfGnpa 30 (74)
T 2c7n_A 18 LCKKGCGYYGNPA 30 (74)
T ss_dssp CCTTCSSSCCCGG
T ss_pred hHHhCCCCCCChh
Confidence 4557899999863
No 124
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=22.82 E-value=1.1e+02 Score=24.17 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEecCCC--C-ccchHHHHHHHHHHHc-CCc
Q 030865 116 STIEAAERIGEELIKTCIALNITEISSYDRNG--S-RRGERMQAFEIPISRH-GFL 167 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~~Vv~fDRgg--~-~YhGrVkAladaaRe~-Gl~ 167 (170)
.|.++++.+++.|.+.+ .|..+|. |=.+. . ....|.+.|.+++.++ |+.
T Consensus 117 D~~~~g~~a~~~L~~~~--~G~~~I~-~i~g~~~~~~~~~R~~Gf~~al~~~pgi~ 169 (332)
T 2rjo_A 117 DGVAYGEETATQLFKSM--GGKGGVV-ALGGIFSNVPAIERKAGLDAALKKFPGIQ 169 (332)
T ss_dssp CHHHHHHHHHHHHHHHT--TTCEEEE-EEECCTTCHHHHHHHHHHHHHHHTCTTEE
T ss_pred ChHHHHHHHHHHHHHHc--CCCCeEE-EEECCCCCccHHHHHHHHHHHHHhCCCcE
Confidence 45566665555555432 5888887 43332 2 2357999999999999 863
No 125
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=22.75 E-value=1.1e+02 Score=24.05 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.-+|..+++++.+.|.+-++ .||+. .+...+++.+++.|
T Consensus 32 ~gIG~~ia~~l~~~G~~V~~-~~r~~----~~~~~~~~~l~~~~ 70 (277)
T 2rhc_B 32 SGIGLEIARRLGKEGLRVFV-CARGE----EGLRTTLKELREAG 70 (277)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EESCH----HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEE-EeCCH----HHHHHHHHHHHhcC
Confidence 46899999999999976555 89873 34444555554433
No 126
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=22.52 E-value=1.1e+02 Score=23.93 Aligned_cols=42 Identities=10% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.-+|..+|+++.+.|.+-++ .||.+ .-..+...+++.+.+.|
T Consensus 21 ~GIG~aia~~la~~G~~V~~-~~r~~-~~~~~~~~~~~~~~~~~ 62 (262)
T 3ksu_A 21 KNLGALTAKTFALESVNLVL-HYHQA-KDSDTANKLKDELEDQG 62 (262)
T ss_dssp SHHHHHHHHHHTTSSCEEEE-EESCG-GGHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHCCCEEEE-EecCc-cCHHHHHHHHHHHHhcC
Confidence 35899999999999987666 77752 23345666666666544
No 127
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=22.45 E-value=1.5e+02 Score=22.80 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRN 146 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRg 146 (170)
.-+|..+|+++.+.|.+-++ .||+
T Consensus 20 ~gIG~~ia~~l~~~G~~V~~-~~~~ 43 (287)
T 3pxx_A 20 RGQGRSHAVKLAEEGADIIL-FDIC 43 (287)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EECC
T ss_pred ChHHHHHHHHHHHCCCeEEE-Eccc
Confidence 45899999999999987666 8987
No 128
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=21.90 E-value=1.5e+02 Score=23.14 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCC---------ccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGS---------RRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~---------~YhGrVkAladaaRe~G 165 (170)
.-+|..+|+++.+.|.+-++ .||... .-..+.+.+++.+.+.|
T Consensus 25 ~gIG~a~a~~la~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (280)
T 3pgx_A 25 RGQGRSHAVRLAAEGADIIA-CDICAPVSASVTYAPASPEDLDETARLVEDQG 76 (280)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHCCCEEEE-EeccccccccccccccCHHHHHHHHHHHHhcC
Confidence 45899999999999987666 898421 12345666666666554
No 129
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=21.79 E-value=1.5e+02 Score=18.43 Aligned_cols=30 Identities=10% Similarity=-0.099 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCccchHHHHHHHHHHHcCCc
Q 030865 136 NITEISSYDRNGSRRGERMQAFEIPISRHGFL 167 (170)
Q Consensus 136 gI~~Vv~fDRgg~~YhGrVkAladaaRe~Gl~ 167 (170)
...=++.-|++ ..+|.|-.+.+.++++|+.
T Consensus 45 ~~~V~I~aD~~--~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 45 NTLFLVGGAKE--VPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp TCCEEEEECTT--SCHHHHHHHHHHHHHTTCC
T ss_pred CceEEEEcCCC--CCHHHHHHHHHHHHHcCCC
Confidence 33334435664 8899999999999999973
No 130
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=21.61 E-value=1.4e+02 Score=23.51 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.-+|..+|+++.+.|..-++ .||+. .+...+++.+++.|
T Consensus 36 ~gIG~aia~~la~~G~~V~~-~~r~~----~~~~~~~~~l~~~~ 74 (271)
T 4ibo_A 36 RGLGRAMAEGLAVAGARILI-NGTDP----SRVAQTVQEFRNVG 74 (271)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-CCSCH----HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCEEEE-EeCCH----HHHHHHHHHHHhcC
Confidence 45899999999999986555 88862 44555566555544
No 131
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=21.56 E-value=1.2e+02 Score=23.92 Aligned_cols=42 Identities=10% Similarity=0.193 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC--CccchHHHHHHHHHHHcCC
Q 030865 124 IGEELIKTCIALNITEISSYDRNG--SRRGERMQAFEIPISRHGF 166 (170)
Q Consensus 124 VG~~lAkra~e~gI~~Vv~fDRgg--~~YhGrVkAladaaRe~Gl 166 (170)
-|..+++.+.+.|..+|.++ -+. .....|...|.+++.++|+
T Consensus 165 ~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~R~~Gf~~al~~~g~ 208 (339)
T 3h5o_A 165 AGAAITRHLLSRGKRRIGFL-GAQLDERVMKRLDGYRAALDAADC 208 (339)
T ss_dssp HHHHHHHHHHHTTCCSEEEE-EESCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCeEEEE-eCCCCccHHHHHHHHHHHHHHCCC
Confidence 34455556667799988733 222 2235699999999999998
No 132
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.46 E-value=1.3e+02 Score=23.39 Aligned_cols=48 Identities=2% Similarity=-0.210 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHHHHHHhC---CCCEEEEecCCCC---ccchHHHHHHHHHHHc
Q 030865 116 STIEAAERIGEELIKTCIAL---NITEISSYDRNGS---RRGERMQAFEIPISRH 164 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~---gI~~Vv~fDRgg~---~YhGrVkAladaaRe~ 164 (170)
.|.++++.+++.|.+.+.+. |..+|. |=.|.. ....|...|.+++.++
T Consensus 107 D~~~~g~~a~~~l~~~~~~~~~~G~~~i~-~i~g~~~~~~~~~R~~Gf~~al~~~ 160 (330)
T 3uug_A 107 DNFQVGVLQATSITDKLGLKDGKGPFNIE-LFGGSPDDNNAFFFYDGAMSVLKPY 160 (330)
T ss_dssp CHHHHHHHHHHHHHHHHTGGGTCCCEEEE-ECBCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCceEEE-EEECCCCCchHHHHHHHHHHHHHhc
Confidence 47778888888888877664 888888 544422 2257899999999987
No 133
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=21.38 E-value=1.5e+02 Score=22.99 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
-+|..+|+++.+.|.+-++ .||+. .+.+.+++.+.+.|
T Consensus 22 gIG~aia~~l~~~G~~V~~-~~r~~----~~~~~~~~~~~~~~ 59 (264)
T 3ucx_A 22 ALGTTLARRCAEQGADLVL-AARTV----ERLEDVAKQVTDTG 59 (264)
T ss_dssp THHHHHHHHHHHTTCEEEE-EESCH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCEEEE-EeCCH----HHHHHHHHHHHhcC
Confidence 4899999999999987555 88862 34555555555544
No 134
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=21.25 E-value=1.6e+02 Score=22.80 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCc---------cchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSR---------RGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~---------YhGrVkAladaaRe~G 165 (170)
.-+|..+|+++.+.|.+-++ .||.+.. -...+..+++.+.+.|
T Consensus 21 ~GIG~a~a~~la~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (277)
T 3tsc_A 21 RGQGRAHAVRMAAEGADIIA-VDIAGKLPSCVPYDPASPDDLSETVRLVEAAN 72 (277)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCEEEE-EeccccccccccccccCHHHHHHHHHHHHhcC
Confidence 46899999999999987666 8985321 2345555555555443
No 135
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.24 E-value=1.5e+02 Score=22.55 Aligned_cols=46 Identities=11% Similarity=-0.031 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCC-EEEEecCCC--Cc-cchHHHHHHHHHHHcC
Q 030865 116 STIEAAERIGEELIKTCIALNIT-EISSYDRNG--SR-RGERMQAFEIPISRHG 165 (170)
Q Consensus 116 ~n~~AA~~VG~~lAkra~e~gI~-~Vv~fDRgg--~~-YhGrVkAladaaRe~G 165 (170)
.|.++++.+++.|++. .|.. ++.++ .|. .. ...|...|.+++.++|
T Consensus 108 d~~~~g~~a~~~l~~~---~g~~~~i~~i-~g~~~~~~~~~R~~gf~~~l~~~~ 157 (303)
T 3d02_A 108 DNEKFAAEYVEHMAKR---MGGKGGYVIY-VGSLTVPQHNLWADLLVKYQKEHY 157 (303)
T ss_dssp CHHHHHHHHHHHHHHH---TTTCEEEEEE-CSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHH---hCcCceEEEE-ecCCCCccHHHHHHHHHHHHHhhC
Confidence 3555555554444432 6776 77634 322 22 2579999999999875
No 136
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=21.23 E-value=1.3e+02 Score=24.06 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCC--EEEEecCCCCc
Q 030865 114 PCSTIEAAERIGEELIKTCIALNIT--EISSYDRNGSR 149 (170)
Q Consensus 114 s~~n~~AA~~VG~~lAkra~e~gI~--~Vv~fDRgg~~ 149 (170)
+.-+.+.|..++...-++|.+.|+. -.| .|++|+.
T Consensus 63 ~~ltl~~A~~l~~aA~~~A~~~g~pV~IaV-vD~~G~l 99 (192)
T 3fpw_A 63 THLTLEAATKAARAAVEAAEKDGRHVSVAV-VDRNGNT 99 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCCEEEE-EETTSCE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE-EeCCCCE
Confidence 3468899999999999999999976 334 7999864
No 137
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=21.20 E-value=1.5e+02 Score=22.29 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHH
Q 030865 121 AERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISR 163 (170)
Q Consensus 121 A~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe 163 (170)
+--+|..+++++.+.|.+-++ .||+. .+...+.+.+.+
T Consensus 20 sggiG~~la~~l~~~G~~V~~-~~r~~----~~~~~~~~~~~~ 57 (255)
T 1fmc_A 20 GAGIGKEIAITFATAGASVVV-SDINA----DAANHVVDEIQQ 57 (255)
T ss_dssp TSHHHHHHHHHHHTTTCEEEE-EESCH----HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCEEEE-EcCCH----HHHHHHHHHHHH
Confidence 346899999999999976444 89973 234444444443
No 138
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=21.19 E-value=29 Score=23.41 Aligned_cols=14 Identities=29% Similarity=0.683 Sum_probs=10.8
Q ss_pred hhccccccccCCCC
Q 030865 9 ALQFNACDFFGTKA 22 (170)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (170)
.+--++|+|||+..
T Consensus 14 ~lC~ngCGFfGnpa 27 (62)
T 2kzy_A 14 MLCSTGCGFYGNPR 27 (62)
T ss_dssp CBCTTCCSSBCCTT
T ss_pred cchhhCCCCcCChh
Confidence 35568999999974
No 139
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=20.95 E-value=1.4e+02 Score=23.19 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.-+|..+|+++.+.|.+-++ .||+. .+...+++.+.+.|
T Consensus 20 ~gIG~aia~~l~~~G~~V~~-~~r~~----~~~~~~~~~l~~~~ 58 (262)
T 3pk0_A 20 KGIGRGIATVFARAGANVAV-AGRST----ADIDACVADLDQLG 58 (262)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EESCH----HHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHCCCEEEE-EeCCH----HHHHHHHHHHHhhC
Confidence 46899999999999986555 89863 34555555555443
No 140
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=20.93 E-value=1.1e+02 Score=23.53 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.-+|..+++++.+.|.+-++ .||+. .+...+++.+++.|
T Consensus 17 ~gIG~~ia~~l~~~G~~V~~-~~r~~----~~~~~~~~~~~~~~ 55 (262)
T 1zem_A 17 GNIGLATALRLAEEGTAIAL-LDMNR----EALEKAEASVREKG 55 (262)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EESCH----HHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHCCCEEEE-EeCCH----HHHHHHHHHHHhcC
Confidence 46899999999999987555 88863 34445555554433
No 141
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=20.82 E-value=1.3e+02 Score=23.41 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHH
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISR 163 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe 163 (170)
.-+|..+++.+.+.|.+-+. .||+. .+...+++.+.+
T Consensus 38 ggIG~~la~~l~~~G~~V~~-~~r~~----~~~~~~~~~~~~ 74 (286)
T 1xu9_A 38 KGIGREMAYHLAKMGAHVVV-TARSK----ETLQKVVSHCLE 74 (286)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EESCH----HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEE-EECCH----HHHHHHHHHHHH
Confidence 45899999999999976444 89863 334444444443
No 142
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=20.72 E-value=1.2e+02 Score=23.45 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHc
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRH 164 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~ 164 (170)
-+|..+|+++.+.|.+=++ .||+.. +.+.+++.+.+.
T Consensus 18 GIG~aia~~l~~~G~~V~~-~~r~~~----~~~~~~~~~~~~ 54 (252)
T 3h7a_A 18 YIGAEIAKKFAAEGFTVFA-GRRNGE----KLAPLVAEIEAA 54 (252)
T ss_dssp HHHHHHHHHHHHTTCEEEE-EESSGG----GGHHHHHHHHHT
T ss_pred hHHHHHHHHHHHCCCEEEE-EeCCHH----HHHHHHHHHHhc
Confidence 5899999999999986555 899643 334444444443
No 143
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=20.68 E-value=83 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC
Q 030865 123 RIGEELIKTCIALNITEISSYDRNG 147 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg 147 (170)
.+|..+|+++++.|. +|+++||..
T Consensus 165 ~iG~~~a~~l~~~G~-~V~~~dr~~ 188 (293)
T 3d4o_A 165 RVGMSVARKFAALGA-KVKVGARES 188 (293)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred HHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999998 666699974
No 144
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=20.65 E-value=1.6e+02 Score=22.29 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHH
Q 030865 121 AERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISR 163 (170)
Q Consensus 121 A~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe 163 (170)
+.-+|..+|+++.+.|.+-++ .||+. .+...+++.+.+
T Consensus 18 s~giG~~~a~~l~~~G~~V~~-~~r~~----~~~~~~~~~~~~ 55 (253)
T 3qiv_A 18 GGGIGQAYAEALAREGAAVVV-ADINA----EAAEAVAKQIVA 55 (253)
T ss_dssp TSHHHHHHHHHHHHTTCEEEE-EESCH----HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHCCCEEEE-EcCCH----HHHHHHHHHHHh
Confidence 346899999999999987555 89862 334444444444
No 145
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Probab=20.44 E-value=79 Score=29.21 Aligned_cols=54 Identities=19% Similarity=-0.002 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCEEEE--ec-----CCC---C-ccc------h-HHHHHHHHHHHcCCcc
Q 030865 115 CSTIEAAERIGEELIKTCIALNITEISS--YD-----RNG---S-RRG------E-RMQAFEIPISRHGFLQ 168 (170)
Q Consensus 115 ~~n~~AA~~VG~~lAkra~e~gI~~Vv~--fD-----Rgg---~-~Yh------G-rVkAladaaRe~Gl~~ 168 (170)
+.|.+.++.+|+.+|+-+.+.||+-... .| |+| + .|+ | -..|+.+++.+.|+..
T Consensus 147 t~d~~l~~~~g~~~a~E~ra~Gi~~~~aPvvDv~r~p~~grig~rsfgeDP~lv~~~a~a~v~Glq~~gV~a 218 (642)
T 3bmx_A 147 ARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIAS 218 (642)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCSSSGGGSSCSSHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCCEEECCccccCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHhCCceE
Confidence 3578999999999999999999974210 12 222 1 121 2 2568999999999864
No 146
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=20.36 E-value=1.7e+02 Score=23.51 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCc--------cchHHHHHHHHHHHcC
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSR--------RGERMQAFEIPISRHG 165 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~--------YhGrVkAladaaRe~G 165 (170)
-+|..+|+++.+.|.+-++ .||+... -..+++.+++.+.+.|
T Consensus 57 GIG~aia~~la~~G~~Vv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (317)
T 3oec_A 57 GQGRTHAVRLAQDGADIVA-IDLCRQQPNLDYAQGSPEELKETVRLVEEQG 106 (317)
T ss_dssp HHHHHHHHHHHHTTCEEEE-EECCCCCTTCCSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCeEEE-EecccccccccccccCHHHHHHHHHHHHhcC
Confidence 5899999999999987777 8886211 1345555555555544
No 147
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=20.36 E-value=1.6e+02 Score=24.13 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHH
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISR 163 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe 163 (170)
-.|+.++..+.+.|+.+|+.++|. ..+.+++++.+.+
T Consensus 136 g~g~aia~~L~~~G~~~v~v~~R~----~~~a~~la~~~~~ 172 (281)
T 3o8q_A 136 GAARGVLKPLLDQQPASITVTNRT----FAKAEQLAELVAA 172 (281)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESS----HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCCeEEEEECC----HHHHHHHHHHhhc
Confidence 367778888888999888779997 3567777777654
No 148
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=20.34 E-value=1.7e+02 Score=23.06 Aligned_cols=41 Identities=7% Similarity=0.146 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCc---------cc------hHHHHHHHHHHH
Q 030865 123 RIGEELIKTCIALNITEISSYDRNGSR---------RG------ERMQAFEIPISR 163 (170)
Q Consensus 123 ~VG~~lAkra~e~gI~~Vv~fDRgg~~---------Yh------GrVkAladaaRe 163 (170)
-+|..+++.+...|+.+++..|+.-.. |. -|+.++++.+++
T Consensus 41 g~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~ 96 (249)
T 1jw9_B 41 GLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTR 96 (249)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHH
Confidence 378889999999999988878987411 11 589999988876
No 149
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=20.30 E-value=1.2e+02 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHcC
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRHG 165 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~G 165 (170)
.=+|+.+|+++.+.|-+=++ .||+. .+.+..++.+.+.|
T Consensus 19 ~GIG~aia~~la~~Ga~Vvi-~~~~~----~~~~~~~~~l~~~g 57 (255)
T 4g81_D 19 RGLGFAYAEGLAAAGARVIL-NDIRA----TLLAESVDTLTRKG 57 (255)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-CCSCH----HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCEEEE-EECCH----HHHHHHHHHHHhcC
Confidence 35899999999999987666 88862 45667777777766
No 150
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=20.15 E-value=1.5e+02 Score=23.57 Aligned_cols=38 Identities=16% Similarity=0.001 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCccchHHHHHHHHHHHc
Q 030865 122 ERIGEELIKTCIALNITEISSYDRNGSRRGERMQAFEIPISRH 164 (170)
Q Consensus 122 ~~VG~~lAkra~e~gI~~Vv~fDRgg~~YhGrVkAladaaRe~ 164 (170)
.-+|..+++++.+.|.+-++ .||+. .+.+.+++.+.+.
T Consensus 44 ~gIG~aia~~L~~~G~~V~~-~~r~~----~~~~~~~~~l~~~ 81 (291)
T 3cxt_A 44 YGIGFAIASAYAKAGATIVF-NDINQ----ELVDRGMAAYKAA 81 (291)
T ss_dssp SHHHHHHHHHHHHTTCEEEE-EESSH----HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHCCCEEEE-EeCCH----HHHHHHHHHHHhc
Confidence 35899999999999976555 88863 3444555555443
No 151
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=20.12 E-value=1.6e+02 Score=23.58 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCC------CccchHHHHHHHHHHHcC
Q 030865 121 AERIGEELIKTCIALNITEISSYDRNG------SRRGERMQAFEIPISRHG 165 (170)
Q Consensus 121 A~~VG~~lAkra~e~gI~~Vv~fDRgg------~~YhGrVkAladaaRe~G 165 (170)
+.-+|..+|+++.+.|.+-++ .||+. ..-......+++.+.+.|
T Consensus 36 s~GIG~aia~~la~~G~~Vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (322)
T 3qlj_A 36 GGGIGRAHALAFAAEGARVVV-NDIGVGLDGSPASGGSAAQSVVDEITAAG 85 (322)
T ss_dssp TSHHHHHHHHHHHHTTCEEEE-ECCCBCTTSSBTCTTSHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHCCCEEEE-EeCcccccccccccHHHHHHHHHHHHhcC
Confidence 346899999999999986666 89861 111345666666666554
Done!